BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12844
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0R5E1|CSPA_MYCS2 Probable cold shock protein A OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=cspA PE=1 SV=1
Length = 67
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
G +++FN E+GFGFI +DG D F H++EIQG + R ++ + V F++G +P
Sbjct: 3 QGTVKWFNAEKGFGFIAP--EDGSADVFVHYTEIQG---SGFRTLEENQKVEFEVGQSPK 57
Query: 75 GRR 77
G +
Sbjct: 58 GPQ 60
>sp|P63848|CSPA_MYCTU Probable cold shock protein A OS=Mycobacterium tuberculosis
GN=cspA PE=3 SV=1
Length = 67
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
G +++FN E+GFGFI +DG D F H++EIQG R ++ + V F+IG +P
Sbjct: 3 QGTVKWFNAEKGFGFIAP--EDGSADVFVHYTEIQG---TGFRTLEENQKVEFEIGHSPK 57
Query: 75 GRR 77
G +
Sbjct: 58 GPQ 60
>sp|P63849|CSPA_MYCBO Probable cold shock protein A OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=cspA PE=3 SV=1
Length = 67
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
G +++FN E+GFGFI +DG D F H++EIQG R ++ + V F+IG +P
Sbjct: 3 QGTVKWFNAEKGFGFIAP--EDGSADVFVHYTEIQG---TGFRTLEENQKVEFEIGHSPK 57
Query: 75 GRR 77
G +
Sbjct: 58 GPQ 60
>sp|P0CL01|CSPJ_SALTY Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspJ PE=3 SV=1
Length = 70
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G++++FN E+GFGFI DG KD F HFS IQ N R + + V F + P
Sbjct: 5 ITGLVKWFNPEKGFGFITP--KDGSKDVFVHFSAIQ---SNEFRTLNENQEVEFSVEQGP 59
Query: 74 GGRREAVHI 82
G AV++
Sbjct: 60 KGPS-AVNV 67
>sp|E1WGN1|CSPJ_SALTS Cold shock-like protein CspJ OS=Salmonella typhimurium (strain
SL1344) GN=cspJ PE=2 SV=1
Length = 70
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G++++FN E+GFGFI DG KD F HFS IQ N R + + V F + P
Sbjct: 5 ITGLVKWFNPEKGFGFITP--KDGSKDVFVHFSAIQ---SNEFRTLNENQEVEFSVEQGP 59
Query: 74 GGRREAVHI 82
G AV++
Sbjct: 60 KGPS-AVNV 67
>sp|P0A986|CSPI_ECOLI Cold shock-like protein CspI OS=Escherichia coli (strain K12)
GN=cspI PE=3 SV=1
Length = 70
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G++++FN E+GFGFI DG KD F HFS IQ N + + + V F I P
Sbjct: 5 MTGLVKWFNPEKGFGFITP--KDGSKDVFVHFSAIQ---SNDFKTLTENQEVEFGIENGP 59
Query: 74 GGRREAVHI 82
G AVH+
Sbjct: 60 KGPA-AVHV 67
>sp|P0A987|CSPI_ECOL6 Cold shock-like protein CspI OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspI PE=3 SV=1
Length = 70
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G++++FN E+GFGFI DG KD F HFS IQ N + + + V F I P
Sbjct: 5 MTGLVKWFNPEKGFGFITP--KDGSKDVFVHFSAIQ---SNDFKTLTENQEVEFGIENGP 59
Query: 74 GGRREAVHI 82
G AVH+
Sbjct: 60 KGPA-AVHV 67
>sp|P0A352|CSPA_BORPE Cold shock-like protein CspA OS=Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251) GN=cspA PE=3 SV=1
Length = 67
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+GV+++FN E+G+GFI + G KD F HFSEIQ N ++++ + V F + P
Sbjct: 3 TGVVKWFNAEKGYGFITP--EAGGKDLFAHFSEIQA---NGFKSLEENQRVSFVTAMGPK 57
Query: 75 GRREAVHIKIF 85
G +A I+I
Sbjct: 58 G-PQATKIQIL 67
>sp|P0A354|CSPA_BORPA Cold shock-like protein CspA OS=Bordetella parapertussis (strain
12822 / ATCC BAA-587 / NCTC 13253) GN=cspA PE=3 SV=1
Length = 67
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+GV+++FN E+G+GFI + G KD F HFSEIQ N ++++ + V F + P
Sbjct: 3 TGVVKWFNAEKGYGFITP--EAGGKDLFAHFSEIQA---NGFKSLEENQRVSFVTAMGPK 57
Query: 75 GRREAVHIKIF 85
G +A I+I
Sbjct: 58 G-PQATKIQIL 67
>sp|P0A353|CSPA_BORBR Cold shock-like protein CspA OS=Bordetella bronchiseptica (strain
ATCC BAA-588 / NCTC 13252 / RB50) GN=cspA PE=3 SV=1
Length = 67
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+GV+++FN E+G+GFI + G KD F HFSEIQ N ++++ + V F + P
Sbjct: 3 TGVVKWFNAEKGYGFITP--EAGGKDLFAHFSEIQA---NGFKSLEENQRVSFVTAMGPK 57
Query: 75 GRREAVHIKIF 85
G +A I+I
Sbjct: 58 G-PQATKIQIL 67
>sp|P58726|CSPJ_SALTI Cold shock-like protein CspJ OS=Salmonella typhi GN=cspJ PE=3
SV=1
Length = 70
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G++++FN E+GFGFI DG KD F HFS IQ N R + + V F P
Sbjct: 5 ITGLVKWFNPEKGFGFITP--KDGSKDVFVHFSAIQ---SNEFRTLNENQEVEFSAEQGP 59
Query: 74 GGRREAVHI 82
G AV++
Sbjct: 60 KGPS-AVNV 67
>sp|P0A9Y4|CSPA_SHIFL Cold shock protein CspA OS=Shigella flexneri GN=cspA PE=3 SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|P0A9Y2|CSPA_SALTY Cold shock protein CspA OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=cspA PE=3 SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|P0A9Y3|CSPA_SALTI Cold shock protein CspA OS=Salmonella typhi GN=cspA PE=3 SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|P0A9Y5|CSPA_SALEN Cold shock protein CspA OS=Salmonella enteritidis GN=cspA PE=3
SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|Q46664|CSPA_ENTAK Major cold shock protein OS=Enterobacter aerogenes (strain ATCC
13048 / DSM 30053 / JCM 1235 / KCTC 2190 / NBRC 13534 /
NCIMB 10102 / NCTC 10006) GN=cspA PE=3 SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|P0A9X9|CSPA_ECOLI Cold shock protein CspA OS=Escherichia coli (strain K12) GN=cspA
PE=1 SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|P0A9Y0|CSPA_ECOL6 Cold shock protein CspA OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=cspA PE=3 SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|P0A9Y1|CSPA_ECO57 Cold shock protein CspA OS=Escherichia coli O157:H7 GN=cspA PE=3
SV=2
Length = 70
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>sp|Q83RI9|CSPC_SHIFL Cold shock-like protein CspC OS=Shigella flexneri GN=cspC PE=3
SV=3
Length = 69
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N L+ + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGLKTLAEGQNVEFEI 54
>sp|P0A981|CSPG_SHIFL Cold shock-like protein CspG OS=Shigella flexneri GN=cspG PE=3
SV=1
Length = 70
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
++G++++FN ++GFGFI DDG KD F HF+ IQ N R + + V F I
Sbjct: 5 MTGLVKWFNADKGFGFITP--DDGSKDVFVHFTAIQ---SNEFRTLNENQKVEFSI 55
>sp|P0A978|CSPG_ECOLI Cold shock-like protein CspG OS=Escherichia coli (strain K12)
GN=cspG PE=1 SV=1
Length = 70
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
++G++++FN ++GFGFI DDG KD F HF+ IQ N R + + V F I
Sbjct: 5 MTGLVKWFNADKGFGFITP--DDGSKDVFVHFTAIQ---SNEFRTLNENQKVEFSI 55
>sp|P0A979|CSPG_ECOL6 Cold shock-like protein CspG OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspG PE=3 SV=1
Length = 70
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
++G++++FN ++GFGFI DDG KD F HF+ IQ N R + + V F I
Sbjct: 5 MTGLVKWFNADKGFGFITP--DDGSKDVFVHFTAIQ---SNEFRTLNENQKVEFSI 55
>sp|P0A980|CSPG_ECO57 Cold shock-like protein CspG OS=Escherichia coli O157:H7 GN=cspG
PE=3 SV=1
Length = 70
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
++G++++FN ++GFGFI DDG KD F HF+ IQ N R + + V F I
Sbjct: 5 MTGLVKWFNADKGFGFITP--DDGSKDVFVHFTAIQ---SNEFRTLNENQKVEFSI 55
>sp|P36995|CSPB_ECOLI Cold shock-like protein CspB OS=Escherichia coli (strain K12)
GN=cspB PE=2 SV=1
Length = 71
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI+ + DG KD F HFS IQ
Sbjct: 5 MTGLVKWFNADKGFGFISPV--DGSKDVFVHFSAIQ 38
>sp|P54584|CSP_ARTGO Cold shock protein OS=Arthrobacter globiformis GN=csp PE=2 SV=1
Length = 67
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIG 70
G +++FN E+GFGFI DD D F H+SEIQ G + + + V F+IG
Sbjct: 2 AQGTVKWFNAEKGFGFITP--DDSDGDVFVHYSEIQTGG---FKTLDENARVQFEIG 53
>sp|P0A9Y9|CSPC_SALTY Cold shock-like protein CspC OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=cspC PE=3 SV=2
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGFKTLAEGQNVEFEI 54
>sp|P0A9Z0|CSPC_SALTI Cold shock-like protein CspC OS=Salmonella typhi GN=cspC PE=3
SV=2
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGFKTLAEGQNVEFEI 54
>sp|E0J500|CSPC_ECOLW Cold shock-like protein CspC OS=Escherichia coli (strain ATCC
9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 /
W) GN=cspC PE=1 SV=1
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGFKTLAEGQNVEFEI 54
>sp|P0A9Y6|CSPC_ECOLI Cold shock-like protein CspC OS=Escherichia coli (strain K12)
GN=cspC PE=1 SV=2
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGFKTLAEGQNVEFEI 54
>sp|P0A9Y7|CSPC_ECOL6 Cold shock-like protein CspC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspC PE=3 SV=2
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGFKTLAEGQNVEFEI 54
>sp|P0A9Y8|CSPC_ECO57 Cold shock-like protein CspC OS=Escherichia coli O157:H7 GN=cspC
PE=3 SV=2
Length = 69
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG---NGFKTLAEGQNVEFEI 54
>sp|P57407|CSPC_BUCAI Cold shock-like protein CspC OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspC PE=3 SV=2
Length = 69
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
+ G +++FN+ +GFGFI DG KD F HFS IQG N + + V F+I
Sbjct: 4 IKGQVKWFNESKGFGFITP--SDGSKDVFVHFSSIQG---NGFKTLTEGQNVEFEI---Q 55
Query: 74 GGRREAVHIKIF 85
G++ + +F
Sbjct: 56 DGQKGPAAVNVF 67
>sp|P0A355|CSPA_LISMO Cold shock-like protein CspLA OS=Listeria monocytogenes serovar
1/2a (strain ATCC BAA-679 / EGD-e) GN=cspLA PE=3 SV=1
Length = 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
G +++FN E+GFGFI R D D F HFS IQG + +++ V FD+
Sbjct: 3 QGTVKWFNAEKGFGFIERENGD---DVFVHFSAIQG---DGFKSLDEGQAVTFDV 51
>sp|P0A356|CSPA_LISIN Cold shock-like protein CspLA OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=cspLA PE=3 SV=1
Length = 66
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
G +++FN E+GFGFI R D D F HFS IQG + +++ V FD+
Sbjct: 3 QGTVKWFNAEKGFGFIERENGD---DVFVHFSAIQG---DGFKSLDEGQAVTFDV 51
>sp|Q89A90|CSPE_BUCBP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=cspE PE=3 SV=3
Length = 69
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI +DG KD F HFS IQ N + + V F+I
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ---SNGFKTLSEGQSVEFEI 54
>sp|P63238|CSPE_BUCAP Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=cspE PE=3 SV=2
Length = 69
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI +DG KD F HFS IQ N + + V F+I
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ---SNGFKTLAEGQSVEFEI 54
>sp|P63237|CSPE_BUCAI Cold shock-like protein CspE OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=cspE PE=3 SV=2
Length = 69
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
+ G +++FN+ +GFGFI +DG KD F HFS IQ N + + V F+I
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ---SNGFKTLAEGQSVEFEI 54
>sp|P48859|CSPF_STRCO Cold shock protein ScoF OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=scoF PE=2 SV=1
Length = 67
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
SG +++FN E+GFGFI + D G D F H+S I R ++ V FDI
Sbjct: 2 ASGTVKWFNSEKGFGFIAQ--DGGGPDVFAHYSNI---NAQGYRELQEGQAVTFDI 52
>sp|P0A975|CSPE_SHIFL Cold shock-like protein CspE OS=Shigella flexneri GN=cspE PE=3
SV=2
Length = 69
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
+ G +++FN+ +GFGFI +DG KD F HFS IQ
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ 37
>sp|E0J1Q3|CSPE_ECOLW Cold shock-like protein CspE OS=Escherichia coli (strain ATCC
9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 /
W) GN=cspE PE=1 SV=1
Length = 69
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
+ G +++FN+ +GFGFI +DG KD F HFS IQ
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ 37
>sp|P0A972|CSPE_ECOLI Cold shock-like protein CspE OS=Escherichia coli (strain K12)
GN=cspE PE=1 SV=2
Length = 69
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
+ G +++FN+ +GFGFI +DG KD F HFS IQ
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ 37
>sp|P0A973|CSPE_ECOL6 Cold shock-like protein CspE OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=cspE PE=3 SV=2
Length = 69
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
+ G +++FN+ +GFGFI +DG KD F HFS IQ
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ 37
>sp|P0A974|CSPE_ECO57 Cold shock-like protein CspE OS=Escherichia coli O157:H7 GN=cspE
PE=3 SV=2
Length = 69
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
+ G +++FN+ +GFGFI +DG KD F HFS IQ
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ 37
>sp|Q01761|CSP7_STRC2 Cold shock-like protein 7.0 OS=Streptomyces clavuligerus (strain
ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307 / NCIMB
12785 / NRRL 3585 / VKM Ac-602) GN=SC7.0 PE=1 SV=1
Length = 66
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
+G +++FN E+GFGFI + D G D F H+S I R+++ + +V FD+
Sbjct: 2 ATGTVKWFNAEKGFGFIAQ--DGGGPDVFVHYSAINA---TGFRSLEENQVVNFDVTHGE 56
Query: 74 GGRREAV 80
G + E V
Sbjct: 57 GPQAENV 63
>sp|P0A362|CSPB_YERPE Cold shock-like protein CspB OS=Yersinia pestis GN=cspB PE=3 SV=1
Length = 70
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
++G++++F+ +GFGFI+ DG KD F HFS IQG
Sbjct: 5 MTGLVKWFDAGKGFGFISPA--DGSKDVFVHFSAIQG 39
>sp|P0A363|CSPB_YEREN Cold shock-like protein CspB OS=Yersinia enterocolitica GN=cspB
PE=3 SV=1
Length = 70
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
++G++++F+ +GFGFI+ DG KD F HFS IQG
Sbjct: 5 MTGLVKWFDAGKGFGFISPA--DGSKDVFVHFSAIQG 39
>sp|Q45097|CSPB_BACCE Cold shock-like protein CspB OS=Bacillus cereus GN=cspB PE=4 SV=1
Length = 65
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G +++FN E+GFGFI +G +D F HFS IQ + +A++ V FDI T
Sbjct: 1 MNGKVKWFNNEKGFGFIEM---EGSEDVFVHFSAIQ---SDGYKALEEGQEVSFDI--TE 52
Query: 74 GGR 76
G R
Sbjct: 53 GNR 55
>sp|O30875|CSPA_MICLC Major cold shock protein OS=Micrococcus luteus (strain ATCC 4698
/ DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=cspA PE=3 SV=1
Length = 67
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG 75
G +++FN E+G+GFI +D D F HFS IQG N + ++ + V F+ P G
Sbjct: 4 GTVKWFNAEKGYGFI--APEDNSADVFVHFSAIQG---NGFKELQENDRVEFETQDGPKG 58
Query: 76 RREAVHIKI 84
+ A K+
Sbjct: 59 LQAANVTKL 67
>sp|P45441|YBX2B_XENLA Y-box-binding protein 2-B OS=Xenopus laevis GN=ybx2-b PE=1 SV=2
Length = 324
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD-NILRAIKYSLLVIFDI 69
V G +++FN G+GFINR +D ++D F H + I+ LR++ V FD+
Sbjct: 40 TQVQGTVKWFNVRNGYGFINR--NDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDV 96
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.146 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,644,427
Number of Sequences: 539616
Number of extensions: 1976898
Number of successful extensions: 3965
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 3875
Number of HSP's gapped (non-prelim): 159
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)