Query psy12844
Match_columns 121
No_of_seqs 114 out of 1090
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 21:13:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12844.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12844hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cam_A Cold-shock domain famil 99.9 2.1E-26 7E-31 149.9 9.7 67 13-85 1-67 (67)
2 1c9o_A CSPB, cold-shock protei 99.9 7.3E-26 2.5E-30 146.6 9.6 66 13-85 1-66 (66)
3 3a0j_A Cold shock protein; OB- 99.9 1.3E-25 4.3E-30 148.3 10.3 68 13-87 1-70 (73)
4 3i2z_B RNA chaperone, negative 99.9 1.8E-25 6.2E-30 146.8 10.4 67 13-85 5-71 (71)
5 1h95_A CSD, Y-box binding prot 99.9 3.7E-25 1.3E-29 148.1 8.3 68 12-85 7-78 (79)
6 3ulj_A LIN28B, DNA-binding pro 99.9 6E-25 2.1E-29 150.9 8.7 71 13-87 8-83 (90)
7 1g6p_A Cold shock protein TMCS 99.9 7.7E-25 2.6E-29 141.9 8.2 66 14-86 1-66 (66)
8 2kcm_A Cold shock domain famil 99.9 1.1E-24 3.9E-29 144.5 8.0 67 14-87 1-68 (74)
9 2k5n_A Putative cold-shock pro 99.9 4.4E-24 1.5E-28 141.7 10.1 67 13-88 2-68 (74)
10 1wfq_A UNR protein; beta-barre 99.9 1.1E-23 3.8E-28 144.0 10.2 69 12-88 17-86 (89)
11 2lss_A Cold shock-like protein 99.8 3.2E-25 1.1E-29 145.3 0.0 66 13-84 4-69 (70)
12 3ts2_A Protein LIN-28 homolog 99.9 4.1E-23 1.4E-27 152.1 9.7 71 13-89 9-86 (148)
13 2yty_A Cold shock domain-conta 99.9 4.7E-23 1.6E-27 140.6 6.0 69 11-87 16-84 (88)
14 3aqq_A Calcium-regulated heat 99.9 7E-22 2.4E-26 146.2 10.2 70 10-87 59-131 (147)
15 2ytx_A Cold shock domain-conta 99.9 3.8E-22 1.3E-26 138.1 8.2 70 10-88 15-84 (97)
16 1x65_A UNR protein; cell-free 99.9 2.2E-22 7.4E-27 137.7 4.2 67 12-87 7-75 (89)
17 2ytv_A Cold shock domain-conta 99.8 3.3E-20 1.1E-24 124.2 5.9 69 11-88 6-76 (79)
18 2bh8_A 1B11; transcription, mo 99.7 1.6E-17 5.5E-22 114.9 8.0 69 4-75 7-76 (101)
19 1a62_A RHO; transcription term 97.4 0.00071 2.4E-08 48.3 7.7 69 13-91 50-125 (130)
20 2k52_A Uncharacterized protein 95.0 0.093 3.2E-06 33.4 6.6 52 13-72 8-59 (80)
21 2id0_A Exoribonuclease 2; RNAs 94.9 0.042 1.4E-06 47.8 6.2 61 13-87 21-81 (644)
22 3go5_A Multidomain protein wit 94.2 0.23 7.9E-06 39.2 8.5 61 13-80 72-133 (285)
23 3l0o_A Transcription terminati 93.5 0.27 9.3E-06 41.4 7.9 80 13-100 57-141 (427)
24 2khi_A 30S ribosomal protein S 92.3 1.2 4.1E-05 30.0 8.6 56 13-73 33-90 (115)
25 3go5_A Multidomain protein wit 90.5 1.3 4.4E-05 34.9 8.3 53 13-80 9-61 (285)
26 3ice_A Transcription terminati 90.3 0.68 2.3E-05 38.9 6.7 68 14-89 54-126 (422)
27 2k4k_A GSP13, general stress p 90.1 1 3.4E-05 31.3 6.6 58 13-75 10-70 (130)
28 2cqo_A Nucleolar protein of 40 89.7 1.6 5.3E-05 29.9 7.2 56 13-72 25-81 (119)
29 2khj_A 30S ribosomal protein S 88.6 1.4 4.9E-05 29.3 6.3 56 13-73 34-90 (109)
30 1y14_B B16, RPB7, DNA-directed 86.9 1.6 5.5E-05 31.4 6.0 54 13-72 86-150 (171)
31 2eqs_A ATP-dependent RNA helic 86.4 1.9 6.6E-05 28.5 5.8 59 12-75 14-77 (103)
32 2b8k_G B16, DNA-directed RNA p 86.1 3 0.0001 31.5 7.4 55 13-73 86-151 (215)
33 2l55_A SILB,silver efflux prot 85.8 1.4 4.9E-05 28.6 4.8 62 14-86 6-75 (82)
34 1luz_A Protein K3, protein K2; 85.3 0.53 1.8E-05 30.7 2.5 54 13-73 14-71 (88)
35 2qcp_X Cation efflux system pr 84.5 1.5 5E-05 28.3 4.3 62 13-84 9-78 (80)
36 2vb2_X Copper protein, cation 83.6 1.5 5.3E-05 28.8 4.2 62 13-84 17-86 (88)
37 2bx2_L Ribonuclease E, RNAse E 83.3 5.7 0.0002 34.0 8.6 60 13-75 48-117 (517)
38 1kl9_A Eukaryotic translation 82.5 4.2 0.00015 29.9 6.7 57 13-73 18-76 (182)
39 1q8k_A Eukaryotic translation 82.4 5.8 0.0002 31.6 7.9 57 13-73 16-74 (308)
40 2a19_A EIF-2- alpha, eukaryoti 82.2 3.7 0.00013 30.0 6.3 57 13-73 18-76 (175)
41 1go3_E DNA-directed RNA polyme 81.5 4.4 0.00015 29.2 6.4 55 13-73 84-150 (187)
42 3aev_A Translation initiation 78.6 8.8 0.0003 30.0 7.7 57 13-73 14-72 (275)
43 4ayb_E DNA-directed RNA polyme 78.4 9.2 0.00031 27.3 7.3 55 13-73 84-150 (180)
44 2c35_B Human RPB7, DNA-directe 76.7 4.8 0.00017 28.7 5.3 54 13-72 84-150 (172)
45 3h0g_G DNA-directed RNA polyme 74.7 3 0.0001 30.1 3.7 54 13-72 87-151 (172)
46 1wi5_A RRP5 protein homolog; S 72.9 18 0.00061 24.1 9.6 58 9-74 20-83 (119)
47 1j6q_A Cytochrome C maturation 72.5 21 0.00073 25.3 7.7 70 15-92 43-112 (136)
48 3cw2_C Translation initiation 68.6 5.2 0.00018 31.0 4.1 57 13-73 14-72 (266)
49 3m7n_A Putative uncharacterize 66.5 27 0.00092 25.2 7.4 56 12-71 59-124 (179)
50 2ba0_A Archeal exosome RNA bin 63.4 45 0.0015 25.0 8.4 56 13-73 60-117 (229)
51 2kct_A Cytochrome C-type bioge 63.3 30 0.001 23.0 7.8 64 15-86 19-85 (94)
52 2id0_A Exoribonuclease 2; RNAs 62.5 15 0.00052 31.7 6.2 57 13-73 563-632 (644)
53 2je6_I RRP4, exosome complex R 59.7 33 0.0011 26.2 7.1 56 13-73 77-136 (251)
54 2vnu_D Exosome complex exonucl 58.5 13 0.00045 32.8 5.2 47 13-71 32-81 (760)
55 1hh2_P NUSA, N utilization sub 56.4 44 0.0015 27.0 7.6 51 12-73 136-186 (344)
56 2z0s_A Probable exosome comple 55.2 51 0.0018 24.7 7.4 57 13-74 69-130 (235)
57 2ja9_A Exosome complex exonucl 55.1 57 0.002 23.6 8.3 56 13-73 10-66 (175)
58 3cp3_A Uncharacterized protein 53.1 44 0.0015 22.4 6.2 30 38-72 55-84 (148)
59 2wg5_A General control protein 52.6 49 0.0017 22.1 6.3 52 7-67 32-83 (109)
60 3psi_A Transcription elongatio 52.3 43 0.0015 31.5 7.7 56 13-73 905-962 (1219)
61 3our_B EIIA, phosphotransferas 46.3 43 0.0015 24.9 5.6 55 4-66 70-129 (183)
62 3d2w_A TAR DNA-binding protein 45.9 15 0.00051 22.8 2.6 12 24-37 47-58 (89)
63 1ax3_A Iiaglc, glucose permeas 45.0 30 0.001 25.0 4.5 52 6-66 50-107 (162)
64 2gpr_A Glucose-permease IIA co 44.4 36 0.0012 24.3 4.8 34 6-45 45-79 (154)
65 1f3z_A EIIA-GLC, glucose-speci 44.2 41 0.0014 24.2 5.1 34 6-45 50-84 (161)
66 2wp8_J Exosome complex exonucl 43.2 31 0.001 31.6 5.1 47 13-71 249-298 (977)
67 2ckz_B C25, DNA-directed RNA p 42.2 62 0.0021 24.2 6.0 53 14-71 85-152 (218)
68 3h43_A Proteasome-activating n 41.0 70 0.0024 20.5 6.0 51 8-67 14-64 (85)
69 1sjq_A Polypyrimidine tract-bi 40.6 16 0.00055 24.3 2.2 9 24-32 51-59 (105)
70 3cdi_A Polynucleotide phosphor 39.7 6.1 0.00021 35.0 0.0 59 13-76 630-690 (723)
71 3hfo_A SSR3341 protein; HFQ, S 39.5 52 0.0018 20.8 4.4 36 9-49 29-64 (70)
72 3ayh_B DNA-directed RNA polyme 37.7 82 0.0028 23.0 6.0 52 14-71 85-156 (203)
73 3dqy_A Toluene 1,2-dioxygenase 36.9 23 0.00079 22.7 2.5 38 74-111 32-71 (106)
74 4aid_A Polyribonucleotide nucl 36.1 7.6 0.00026 34.5 0.0 59 12-75 639-699 (726)
75 3fkh_A Putative pyridoxamine 5 36.1 1E+02 0.0035 21.0 6.1 68 14-91 22-91 (138)
76 3bzc_A TEX; helix-turn-helix, 35.3 21 0.00073 31.9 2.8 56 13-73 657-713 (785)
77 1sr3_A APO-CCME; OB fold, beta 35.2 55 0.0019 23.2 4.4 69 15-92 39-107 (136)
78 2gu1_A Zinc peptidase; alpha/b 33.9 35 0.0012 27.1 3.6 50 14-67 249-300 (361)
79 2cq1_A PTB-like protein L; RRM 33.0 25 0.00087 22.7 2.2 10 23-32 49-58 (101)
80 3slu_A M23 peptidase domain pr 32.8 37 0.0013 27.5 3.6 54 14-71 263-317 (371)
81 1e3p_A Guanosine pentaphosphat 32.4 6.8 0.00023 34.9 -0.9 59 13-76 670-734 (757)
82 2qpz_A Naphthalene 1,2-dioxyge 31.6 50 0.0017 20.8 3.5 38 74-111 34-73 (103)
83 2i7f_A Ferredoxin component of 31.2 11 0.00039 24.3 0.2 38 74-111 35-74 (108)
84 1sqw_A Saccharomyces cerevisia 30.5 42 0.0014 25.0 3.3 61 1-68 114-182 (188)
85 3tuf_B Stage II sporulation pr 29.8 48 0.0017 25.4 3.7 50 14-67 100-151 (245)
86 2xnq_A Nuclear polyadenylated 29.3 33 0.0011 21.4 2.3 18 15-32 47-64 (97)
87 4hti_A Receptor-type tyrosine- 28.4 15 0.0005 25.0 0.4 21 61-82 50-70 (99)
88 3hfn_A ASL2047 protein; HFQ, S 28.3 29 0.001 22.1 1.8 36 9-49 31-66 (72)
89 2ad9_A Polypyrimidine tract-bi 28.1 31 0.001 23.3 2.0 9 24-32 66-74 (119)
90 2m0o_A PHD finger protein 1; t 27.7 1.3E+02 0.0044 19.5 5.4 37 13-52 42-78 (79)
91 2wbr_A GW182, gawky, LD47780P; 27.3 43 0.0015 21.9 2.6 18 15-32 31-50 (89)
92 2ylb_A Protein HFQ; RNA-bindin 27.2 32 0.0011 21.9 1.8 31 12-49 32-62 (74)
93 2cpd_A Apobec-1 stimulating pr 27.2 37 0.0013 20.9 2.2 17 16-32 42-58 (99)
94 2e5p_A Protein PHF1, PHD finge 26.7 1.2E+02 0.0042 19.1 6.3 38 13-53 25-62 (68)
95 3nyy_A Putative glycyl-glycine 26.7 69 0.0023 24.5 4.0 51 14-68 146-199 (252)
96 2d9o_A DNAJ (HSP40) homolog, s 26.5 48 0.0016 21.4 2.7 10 23-32 52-61 (100)
97 1wex_A Hypothetical protein (r 25.6 41 0.0014 21.7 2.2 10 23-32 49-58 (104)
98 3gce_A Ferredoxin component of 25.4 57 0.0019 21.5 3.0 38 74-111 41-82 (121)
99 4aay_B AROB; oxidoreductase, r 25.3 26 0.00089 25.4 1.3 18 94-111 114-131 (175)
100 2cq2_A Hypothetical protein LO 25.3 32 0.0011 23.1 1.7 10 23-32 61-70 (114)
101 4he6_A Peptidase family U32; u 24.8 1.3E+02 0.0045 18.7 5.2 19 14-32 8-26 (89)
102 1uwv_A 23S rRNA (uracil-5-)-me 24.5 2.6E+02 0.009 22.1 9.6 60 13-90 16-75 (433)
103 1ah9_A IF1, initiation factor 24.0 1.3E+02 0.0043 18.2 6.4 52 13-71 7-58 (71)
104 1kq1_A HFQ, HOST factor for Q 23.9 39 0.0013 21.7 1.8 32 12-49 30-61 (77)
105 1xhn_A CREG, cellular represso 23.7 52 0.0018 23.1 2.7 55 14-72 31-94 (184)
106 1vm9_A Toluene-4-monooxygenase 23.6 47 0.0016 21.3 2.3 16 96-111 58-73 (111)
107 1s79_A Lupus LA protein; RRM, 23.2 37 0.0013 21.7 1.7 11 22-32 49-59 (103)
108 1qwy_A Peptidoglycan hydrolase 23.2 72 0.0025 25.2 3.6 49 14-66 202-254 (291)
109 2jvo_A Nucleolar protein 3; nu 22.8 57 0.0019 20.8 2.5 8 25-32 65-72 (108)
110 1nyk_A Rieske iron-sulfur prot 22.6 78 0.0027 22.5 3.5 20 94-113 99-118 (165)
111 1fqt_A Rieske-type ferredoxin 22.1 85 0.0029 20.1 3.3 17 95-111 60-76 (112)
112 2qjy_C Ubiquinol-cytochrome C 21.9 36 0.0012 24.7 1.5 14 97-110 145-158 (187)
113 2e5q_A PHD finger protein 19; 21.8 1.5E+02 0.0052 18.4 4.2 37 13-52 23-59 (63)
114 3m9b_A Proteasome-associated A 21.8 75 0.0026 24.8 3.4 53 5-67 91-143 (251)
115 1g8k_B Arsenite oxidase; molyb 21.4 1E+02 0.0036 20.7 3.8 17 95-111 72-88 (133)
116 3sb2_A Protein HFQ; SM-like, R 21.4 47 0.0016 21.5 1.8 31 12-49 31-61 (79)
117 1rie_A Rieske iron-sulfur prot 21.3 1.1E+02 0.0038 20.4 3.9 14 97-110 87-100 (129)
118 3cnr_A Type IV fimbriae assemb 21.2 81 0.0028 21.4 3.1 13 13-25 62-74 (117)
119 2krb_A Eukaryotic translation 20.5 88 0.003 18.3 2.9 9 24-32 46-54 (81)
120 3i4o_A Translation initiation 20.3 1.8E+02 0.006 18.5 6.5 53 14-73 16-68 (79)
121 2la4_A Nuclear and cytoplasmic 20.2 79 0.0027 19.3 2.7 10 23-32 61-70 (101)
122 2dnq_A RNA-binding protein 4B; 20.1 51 0.0018 19.8 1.8 18 15-32 32-49 (90)
No 1
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=99.94 E-value=2.1e-26 Score=149.94 Aligned_cols=67 Identities=36% Similarity=0.690 Sum_probs=63.2
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIF 85 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~ 85 (121)
|.+|+|||||.+||||||++ +++++|||||+|+|...++ +.|.+||+|+|++..+++| ++|++|+++
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~--~~gg~dvFvH~s~i~~~g~---~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 67 (67)
T 3cam_A 1 MATGIVKWFNDAKGFGFITP--DEGGEDLFAHFSAINMEGF---KTLKEGQRVSFDVTTGPKG-KQAANIQAA 67 (67)
T ss_dssp CEEEEEEEEETTTTEEEEEE--TTSCCCEEEEGGGBCGGGG---SSCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred CCCEEEEEEECCCCeEEEec--CCCCccEEEEHHHccccCC---CCCCCCCEEEEEEEECCCC-ccceEEEeC
Confidence 67899999999999999999 8888899999999999888 8999999999999999999 899999864
No 2
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=99.93 E-value=7.3e-26 Score=146.59 Aligned_cols=66 Identities=32% Similarity=0.604 Sum_probs=62.5
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIF 85 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~ 85 (121)
|.+|+|||||++||||||++ ++| +|||||+|+|...++ +.|.+||+|+|++..+++| ++|++|+++
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~--~~g-~dvFvH~s~i~~~g~---~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 66 (66)
T 1c9o_A 1 MQRGKVKWFNNEKGYGFIEV--EGG-SDVFVHFTAIQGEGF---KTLEEGQEVSFEIVQGNRG-PQAANVVKL 66 (66)
T ss_dssp CEEEEEEEEETTTTEEEEEE--TTE-EEEEEEGGGBCSSSC---CCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred CCceEEEEEECCCCeEEEec--CCC-ccEEEEHHHccccCC---CCCCCCCEEEEEEEECCCC-cEeEEEEeC
Confidence 67999999999999999999 888 899999999999998 7899999999999999999 999999864
No 3
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=99.93 E-value=1.3e-25 Score=148.26 Aligned_cols=68 Identities=29% Similarity=0.630 Sum_probs=64.0
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECC--CCCceEEEEEEcCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP--GGRREAVHIKIFDT 87 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~--kGk~~A~~V~~~~~ 87 (121)
|.+|+|||||.+||||||++ ++| +|||||+|+|...++ +.|.+||+|+|++..++ +| ++|++|++++.
T Consensus 1 m~~G~Vk~fn~~kGfGFI~~--~~g-~dvFvH~s~i~~~g~---~~l~~G~~V~f~~~~~~~~kG-~~A~~V~~~~~ 70 (73)
T 3a0j_A 1 MQKGRVKWFNAEKGYGFIER--EGD-TDVFVHYTAINAKGF---RTLNEGDIVTFDVEPGRNGKG-PQAVNVTVVEP 70 (73)
T ss_dssp CEEEEEEEEETTTTEEEEEC--TTS-CCEEEEGGGBCSSSC---SSCCTTCEEEEEEECCSCCSS-SEEEEEEEEEC
T ss_pred CCCEEEEEEECCCCEEEEec--CCC-CcEEEEhhhccccCC---CCCCCCCEEEEEEEECCCCCC-CEEEEEEeCCC
Confidence 67999999999999999999 887 899999999999998 89999999999999998 88 99999998864
No 4
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=99.93 E-value=1.8e-25 Score=146.80 Aligned_cols=67 Identities=34% Similarity=0.625 Sum_probs=63.3
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIF 85 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~ 85 (121)
|.+|+|||||++||||||++ +++++|||||+|+|...++ +.|.+||+|+|++..+++| ++|++|+++
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~--~~g~~dvFvH~s~i~~~g~---~~l~~G~~V~f~~~~~~kG-~~A~~V~~~ 71 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQTNGF---KTLAEGQRVEFEITNGAKG-PSAANVTAL 71 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEE--TTCCCCEEEEGGGBCCSSC---CCCCTTCEEEEEEEEETTE-EEEEEEEEC
T ss_pred cccEEEEEEECCCCcEEEec--CCCCccEEEEhHHcccccC---cCCCCCCEEEEEEEECCCC-CEeEEEEeC
Confidence 46899999999999999999 8888899999999999988 7899999999999999999 999999874
No 5
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.92 E-value=3.7e-25 Score=148.07 Aligned_cols=68 Identities=32% Similarity=0.505 Sum_probs=62.5
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccC----CCCcccCCCCCCEEEEEEEECCCCCceEEEEEEc
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG----TDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIF 85 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~----g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~ 85 (121)
.|.+|+|||||.+||||||++ +++++|||||+|+|... ++ +.|.+||+|+|++..+++| ++|++|+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~--~~gg~DvFvH~s~i~~~~~~~g~---~~l~~G~~V~f~~~~~~kG-~~A~~V~~p 78 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINR--NDTKEDVFVHQTAIKKNNPRKYL---RSVGDGETVEFDVVEGEKG-AEAANVTGP 78 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEE--GGGTEEEEEEGGGBCSCCCSCCS---CSCCSSCEEEEEEEECSSS-EEEESBCCC
T ss_pred cccceEEEEEECCCCcEEEec--CCCCccEEEEhHHcccccccccc---ccCCCCCEEEEEEEECCCC-ceeEEEECc
Confidence 478999999999999999999 88888999999999976 67 7899999999999999999 899998754
No 6
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=99.92 E-value=6e-25 Score=150.88 Aligned_cols=71 Identities=27% Similarity=0.304 Sum_probs=63.4
Q ss_pred eeeeEEEEeeCCCCeEEEEecC-----CCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIG-----DDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDT 87 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~-----d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~ 87 (121)
+.+|+|||||..||||||+.++ +++++|||||+|+|+..++ +.|.+||+|+|++..+++| ++|++|+.+..
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~---~~L~eG~~V~f~v~~g~kG-~~A~~Vtg~~G 83 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF---RSLKEGEPVEFTFKKSSKG-FESLRVTGPGG 83 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSS---CCCCTTCEEEEEEEEETTE-EEEEEEECGGG
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCC---CccCCCCEEEEEEEECCCC-cEEEEEECCCC
Confidence 5689999999999999997310 5667899999999999999 8999999999999999999 99999997754
No 7
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=99.91 E-value=7.7e-25 Score=141.89 Aligned_cols=66 Identities=32% Similarity=0.684 Sum_probs=61.7
Q ss_pred eeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcC
Q psy12844 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFD 86 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~ 86 (121)
++|+|||||.+||||||++ ++| +|||||+|+|...++ +.|.+||+|+|++..+++| ++|++|++++
T Consensus 1 m~G~Vk~fn~~kGfGFI~~--~~g-~dvFvH~s~i~~~g~---~~l~~G~~V~f~~~~~~~G-~~A~~V~~~~ 66 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITK--DEG-GDVFVHWSAIEMEGF---KTLKEGQVVEFEIQEGKKG-PQAAHVKVVE 66 (66)
T ss_dssp CCEEEEEEETTTTEEEEEE--TTS-CBCBBCSSSSCCSSC---CCCCSSSEEEEEEECSSSC-CEEEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEec--CCC-ceEEEEhHHccccCC---CCCCCCCEEEEEEEECCCC-CEEEEEEECC
Confidence 4799999999999999999 876 799999999999998 8999999999999999999 9999999763
No 8
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=99.91 E-value=1.1e-24 Score=144.54 Aligned_cols=67 Identities=31% Similarity=0.521 Sum_probs=62.9
Q ss_pred eeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc-cCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCC
Q psy12844 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ-GGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDT 87 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~-~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~ 87 (121)
++|+|||||.+||||||++ ++| +|||||+|+|. ..++ +.|.+||+|+|++..+++| ++|++|+++..
T Consensus 1 ~~G~Vkwfn~~KGfGFI~~--~dG-~DvFvH~s~i~~~~g~---~~l~~G~~V~F~~~~g~kG-~~A~~V~~~~~ 68 (74)
T 2kcm_A 1 MKGKVVSYLAAKKYGFIQG--DDG-ESYFLHFSELLDKKDE---GKLVKGSMVHFDPTPTPKG-LAAKAISLPLE 68 (74)
T ss_dssp CEEEEEEEETTTTEEEEEE--TTS-CEECCCGGGSSCSGGG---TTCCTTSEEEEEEECTTTS-CEEEEEECCSC
T ss_pred CCEEEEEEECCCCEEEEec--CCC-ceEEEEhhhcccCCCC---CCCCCCCEEEEEEEECCCC-ceeEEEEEcCc
Confidence 4799999999999999999 888 89999999999 8888 8999999999999999999 99999998864
No 9
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=99.91 E-value=4.4e-24 Score=141.66 Aligned_cols=67 Identities=27% Similarity=0.512 Sum_probs=61.7
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCCc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTR 88 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~~ 88 (121)
|.+|+|||||.+||||||++ ++|++| |||+|+|...+ .|++||+|+|++..+++| ++|++|+++..+
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~--~dg~~d-FvH~s~i~~~g-----~l~~G~~V~F~~~~g~kG-~~A~~V~~~~~~ 68 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKD--ENGDNR-YFHVIKVANPD-----LIKKDAAVTFEPTTNNKG-LSAYAVKVVPLE 68 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEE--SSSCEE-EEEGGGBSSGG-----GCCTTCEEEEEEEECSSS-EEEEEEEECCSS
T ss_pred CcceEEEEEECCCCeEEEec--CCCCce-EEEHhHcccCC-----CCCCCCEEEEEEEeCCCC-ceeEEEEeCCCc
Confidence 67999999999999999999 888777 99999999775 599999999999999999 999999998654
No 10
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.90 E-value=1.1e-23 Score=144.00 Aligned_cols=69 Identities=25% Similarity=0.395 Sum_probs=63.0
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCC-CCceEEEEEEcCCc
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG-GRREAVHIKIFDTR 88 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~k-Gk~~A~~V~~~~~~ 88 (121)
.|.+|+||||| ||||||++ +++++|||||+++|... + +.|.+||+|+|++..+++ |+++|++|++++.+
T Consensus 17 ~~~~G~Vkwf~--KGfGFI~~--ddgg~DVFvH~s~i~~~-~---~~L~~G~~V~F~v~~~~k~Gk~~A~~V~~~~~~ 86 (89)
T 1wfq_A 17 LRETGVIEKLL--TSYGFIQC--SERQARLFFHCSQYNGN-L---QDLKVGDDVEFEVSSDRRTGKPIAVKLVKISGP 86 (89)
T ss_dssp CEEEEEEEEEC--SSEEEEEE--TTTTEEEEEETTTCSSC-T---TTCCTTCCEEEEEEECSSSCCEEEEEEEESSCC
T ss_pred cccceEEEEEe--CCeeEEec--CCCCccEEEEhHHhhCc-c---CCCCCCCEEEEEEEECCCCCCcEEEEEEECCcC
Confidence 46799999996 99999999 88888999999999977 6 799999999999999998 88999999998653
No 11
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=99.82 E-value=3.2e-25 Score=145.26 Aligned_cols=66 Identities=32% Similarity=0.605 Sum_probs=61.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEE
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKI 84 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~ 84 (121)
+++|+|||||.+||||||++ +++++|||||+|+|...++ +.|.+||+|+|++..+++| ++|++|++
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~--~~gg~dvFvH~s~i~~~g~---~~l~~G~~V~f~~~~~~~g-~~A~~V~~ 69 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQ--DNGGKDVFVHKSAVDAAGL---HSLEEGQDVIFDLEEKQGK-AYAVNLRI 69 (70)
Confidence 46899999999999999999 8888899999999999988 7899999999999999999 99999874
No 12
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.89 E-value=4.1e-23 Score=152.07 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=64.7
Q ss_pred eeeeEEEEeeCCCCeEEEEecCC-------CCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGD-------DGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIF 85 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d-------~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~ 85 (121)
+.+|+|||||.+||||||++ + ++++|||||+|+|...++ +.|.+|++|+|++..+++| ++|++|+.+
T Consensus 9 ~~~G~Vkwfn~~kGfGFI~~--~~~~g~p~~~g~DvFvH~s~i~~~g~---~~l~eG~~V~f~~~~g~kG-~~A~~V~~p 82 (148)
T 3ts2_A 9 HGAGICKWFNVRMGFGFLSM--TARAGVALDPPVDVFVHQSKLHMEGF---RSLKEGEAVEFTFKKSAKG-LESIRVTGP 82 (148)
T ss_dssp EEEEEEEEEETTTTEEEEEE--EEETTEEEEEEEEEEEEGGGBCSSSS---CCCCTTCEEEEEEEEETTE-EEEEEEESG
T ss_pred cceeEEEEEECCCCeeEEee--CccccccCCCCccEEEEhHHhcccCC---ccCCCCCEEEEEEEEcccc-chhhccccc
Confidence 35899999999999999998 6 467899999999999998 8999999999999999999 999999987
Q ss_pred CCcc
Q psy12844 86 DTRL 89 (121)
Q Consensus 86 ~~~~ 89 (121)
+...
T Consensus 83 gg~p 86 (148)
T 3ts2_A 83 GGVF 86 (148)
T ss_dssp GGCC
T ss_pred CCcc
Confidence 6543
No 13
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.88 E-value=4.7e-23 Score=140.58 Aligned_cols=69 Identities=22% Similarity=0.437 Sum_probs=62.8
Q ss_pred eeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCC
Q psy12844 11 EVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDT 87 (121)
Q Consensus 11 ~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~ 87 (121)
..+.+|+|+||| ||||||++ +++++|||||+|+|... + +.|.+||+|+|++..+++|+++|++|++++.
T Consensus 16 ~~~~~G~Vk~f~--kGfGFI~~--ddgg~DvFvH~S~i~~~-~---~~L~~G~~V~F~~~~g~~Gk~~A~~V~~~~~ 84 (88)
T 2yty_A 16 SKRLLGYVATLK--DNFGFIET--ANHDKEIFFHYSEFSGD-V---DSLELGDMVEYSLSKGKGNKVSAEKVNKTSG 84 (88)
T ss_dssp CCCEEEEEEEEC--SSEEEEEC--SSSSCEEEEETTTCCSC-T---TTCCTTCEEEECCCCCSCSCCBCCSCEECCC
T ss_pred CCceeEEEEEEE--CCccEEec--CCCCceEEEEEhhhccc-c---CcCCCCCEEEEEEEECCCCCeEeEEEEECCC
Confidence 345799999997 89999999 88888999999999977 6 7999999999999999999889999998864
No 14
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=7e-22 Score=146.17 Aligned_cols=70 Identities=27% Similarity=0.439 Sum_probs=61.1
Q ss_pred eeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECC---CCCceEEEEEEcC
Q psy12844 10 EEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP---GGRREAVHIKIFD 86 (121)
Q Consensus 10 ~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~---kGk~~A~~V~~~~ 86 (121)
+..|.+|+|||||.+||||||++ ++|++|||||+++|.+. ..|.+||+|+|++..++ +| ++|++|++++
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~--ddGg~DVFVH~Sai~~~-----~~L~eGq~V~Fev~~~~~~~~g-~qA~nV~~~~ 130 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITP--ADGGPDIFLHISDVEGE-----YVPVEGDEVTYKMCSIPPKNEK-LQAVEVVITH 130 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEE--SSSCSCEEEEGGGEESS-----BCCCTTCEEEEEEEEC--CCSC-EEEEEEEEEE
T ss_pred cCCccceEEEEEeCCCCeEEecc--CCCCccEEEEeeeecCC-----CcCCCCCEEEEEEEeccCCCCC-ceEEEEEeCC
Confidence 34578999999999999999999 88889999999999854 37999999999999743 44 9999999986
Q ss_pred C
Q psy12844 87 T 87 (121)
Q Consensus 87 ~ 87 (121)
.
T Consensus 131 ~ 131 (147)
T 3aqq_A 131 L 131 (147)
T ss_dssp C
T ss_pred C
Confidence 4
No 15
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.87 E-value=3.8e-22 Score=138.10 Aligned_cols=70 Identities=29% Similarity=0.484 Sum_probs=62.4
Q ss_pred eeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCCc
Q psy12844 10 EEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTR 88 (121)
Q Consensus 10 ~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~~ 88 (121)
+..|.+|+|||| +||||||++ +++++|||||+++|... + +.|.+||+|+|++..+++| ++|++|++++..
T Consensus 15 ~~~~~~G~Vkwf--~KGfGFI~~--ddg~~DvFvH~s~i~~~-~---~~L~~G~~V~F~v~~~~~g-~~A~~V~~~~~~ 84 (97)
T 2ytx_A 15 KQARCQGVVCAM--KEAFGFIER--GDVVKEIFFHYSEFKGD-L---ETLQPGDDVEFTIKDRNGK-EVATDVRLLPQG 84 (97)
T ss_dssp CCCCEEEEECCC--CSSEEEEEC--SSSCCCEEEETTTCCSC-T---TSCCSCCEEEEEECCCSSS-CBEEEEEECCCS
T ss_pred CCcceeEEEEEE--eCCceEEec--CCCCceEEEEehHhccc-c---CCCCCCCEEEEEEEcCCCC-cEEEEEEECCCC
Confidence 356789999999 899999999 88888999999999987 6 7999999999999876666 999999998753
No 16
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=99.85 E-value=2.2e-22 Score=137.74 Aligned_cols=67 Identities=33% Similarity=0.399 Sum_probs=60.5
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCC--CCceEEEEEEcCC
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG--GRREAVHIKIFDT 87 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~k--Gk~~A~~V~~~~~ 87 (121)
.+.+|+||||+ ||||||++ +++++|||||+|+|.. + ..|++||+|+|++..+++ |+++|++|+++..
T Consensus 7 ~r~~G~Vk~f~--KGfGFI~~--~~gg~DvFvH~s~i~~-~----~~L~~G~~V~F~v~~g~kg~G~~~A~~V~~~~~ 75 (89)
T 1x65_A 7 GREMGVIAAMR--DGFGFIKC--VDRDVRMFFHFSEILD-G----NQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPK 75 (89)
T ss_dssp CCEEEEEEECC--TTBCEEEE--SSSSSCCCCBTTGGGG-S----CCCCTTCCEEECCBCCSSSCCCCBCCSCEECCB
T ss_pred cceeEEEEEEe--CCcceeec--CCCCccEEEEhhhccC-C----CCCCCCCEEEEEEEeCCCcCCCceeeEEEECCC
Confidence 46799999996 99999999 8888899999999997 4 589999999999999986 5799999999865
No 17
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=99.80 E-value=3.3e-20 Score=124.20 Aligned_cols=69 Identities=23% Similarity=0.350 Sum_probs=59.5
Q ss_pred eeeeeeEEEEeeCCCCeEEEEecCCCC-cccEEEEccccccCCCCcccCCCCCCEEEEEEEECCC-CCceEEEEEEcCCc
Q psy12844 11 EVYVSGVIQFFNKERGFGFINRIGDDG-RKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG-GRREAVHIKIFDTR 88 (121)
Q Consensus 11 ~~m~~G~Vkwfn~~kGfGFI~~~~d~g-~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~k-Gk~~A~~V~~~~~~ 88 (121)
++..+|+|+|| +||||||++ +++ ++|||||+++|. .+ ..|++||+|+|++..+++ |+.+|++|+++..+
T Consensus 6 ~~~~~G~V~~~--~KGfGFI~~--ddg~g~DvFvH~s~i~-~g----~~l~~G~~V~F~v~~~~k~G~~~A~~V~~~~~p 76 (79)
T 2ytv_A 6 SGLRRATVECV--KDQFGFINY--EVGDSKKLFFHVKEVQ-DG----IELQAGDEVEFSVILNQRTGKCSACNVWRVSGP 76 (79)
T ss_dssp CSBCCEEEEEC--CSSEEEESC--CCSSSSSEEEETTTCC-SS----CCCCTTCEEECBCEECSSSCCEECCSCEECSCC
T ss_pred CCcccEEEEEe--cccceeEeC--CCCCCCcEEEEhHHcC-CC----CcCCCCCEEEEEEEECCCCCCceeEEEEECCCC
Confidence 34479999999 599999999 877 589999999999 55 489999999999999988 83399999998643
No 18
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=99.72 E-value=1.6e-17 Score=114.88 Aligned_cols=69 Identities=33% Similarity=0.547 Sum_probs=53.0
Q ss_pred cccccceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECC-CC
Q psy12844 4 HLGKIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP-GG 75 (121)
Q Consensus 4 ~~~~~~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~-kG 75 (121)
+.|+.....|.+|+|||||.++|||||++ +++++|+|||+|+|...++ ....|++|+.|+|++.... .|
T Consensus 7 ~~~~~~~~~~~~G~Vk~fn~~kGfGFI~~--~~gg~dvfvH~s~l~~~~~-~~~~l~~Ge~V~g~V~~i~~fG 76 (101)
T 2bh8_A 7 HHGSRLQSGKMTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAGSSGAA-VRGNPQQGDRVEGKIKSITDFG 76 (101)
T ss_dssp ---------CEEEEEEEEEGGGTEEEEEE--SSSSCEEEEECCCSCSSSC-CCCCCCTTCEEEEEEEECCSEE
T ss_pred eeccccccccceeEEEEEECCCCCEEEEe--CCCCcEEEEEEEEEecCCc-cccCCCCCCEEEEEEEEeCCcE
Confidence 56888888899999999999999999999 8888999999999997763 1147999999999999865 46
No 19
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=97.38 E-value=0.00071 Score=48.34 Aligned_cols=69 Identities=19% Similarity=0.314 Sum_probs=52.3
Q ss_pred eeeeEEEEeeCCCCeEEEEecCC-----CCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCC-Cc-eEEEEEEc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGD-----DGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG-RR-EAVHIKIF 85 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d-----~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kG-k~-~A~~V~~~ 85 (121)
...|++.-- .+||||+.+ + .+..|||++.+.+...+ |..||.|.-.+.....| |+ .-..|..+
T Consensus 50 ~~~Gvlei~--~dG~GFlr~--~~~~y~~~~~DiyVs~~~irrf~------lr~GD~V~g~vr~~~~~ek~~~l~~v~~v 119 (130)
T 1a62_A 50 FGDGVLEIL--QDGFGFLRS--ADSSYLAGPDDIYVSPSQIRRFN------LRTGDTISGKIRPPKEGERYFALLKVNEV 119 (130)
T ss_dssp EEEEEEEEC--TTSCEEEEC--GGGTTCCCTTCEEECHHHHHHTT------CCTTCEEEEEEECCCTTCCSEEEEEEEEE
T ss_pred EEEEEEEEc--CCCeEEEec--CCcCCCCCCCCEEECHHHHhHhC------CCCCCEEEEEEeCCCCCCcccceeEEEeE
Confidence 357888764 579999999 6 36689999999998776 79999999999876655 33 44567666
Q ss_pred CCcccc
Q psy12844 86 DTRLYL 91 (121)
Q Consensus 86 ~~~~~~ 91 (121)
+...|.
T Consensus 120 ng~~pe 125 (130)
T 1a62_A 120 NFDKPE 125 (130)
T ss_dssp TTBCCC
T ss_pred CCCCHH
Confidence 655543
No 20
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=95.03 E-value=0.093 Score=33.40 Aligned_cols=52 Identities=8% Similarity=0.116 Sum_probs=38.1
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEEC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~ 72 (121)
.+.|+|+... .||+.... ++ +.+-|+|.|++..... ..++.||.|...+..-
T Consensus 8 iv~G~V~~v~---~~G~fV~l-~~-~~~Gllh~sel~~~~~---~~~~~Gd~V~v~V~~v 59 (80)
T 2k52_A 8 FYKGVVTRIE---KYGAFINL-NE-QVRGLLRPRDMISLRL---ENLNVGDEIIVQAIDV 59 (80)
T ss_dssp EEEEEEEEEE---TTEEEEEE-ET-TEEEEECGGGCSSCCG---GGCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEe---CCEEEEEE-CC-CCEEEEEHHHCCcccc---eeeCCCCEEEEEEEEE
Confidence 3788999874 37854441 44 4789999999975432 4689999999988764
No 21
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=94.94 E-value=0.042 Score=47.79 Aligned_cols=61 Identities=25% Similarity=0.402 Sum_probs=47.5
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDT 87 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~ 87 (121)
...|+|+-= .+||||+.+ ++ ++|||+.-.++.. .-.||+|...+... +|++.|.-+.++..
T Consensus 21 ~~~G~~~~~--~~GfgF~~~--d~-~~difi~~~~~~~--------a~~GD~V~v~i~~~-~~~~eg~v~~iler 81 (644)
T 2id0_A 21 RAEGVVKAT--EKGFGFLEV--DA-QKSYFIPPPQMKK--------VMHGDRIIAVIHSE-KERESAEPEELVEP 81 (644)
T ss_dssp EEEEEEECC--SSSCEEEEC--SS-SCEEEECHHHHTT--------SCTTCEEEEEEECC-SSSCEEEEEEEEEC
T ss_pred eEEEEEEEe--cCCcEEEEE--CC-CCCEEECHHHHhc--------CCCCCEEEEEEecC-CCCeEEEEEEEEec
Confidence 468999863 689999999 76 4799999887653 35799999998764 56788877777753
No 22
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=94.23 E-value=0.23 Score=39.23 Aligned_cols=61 Identities=10% Similarity=0.039 Sum_probs=44.3
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCC-cccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEE
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDG-RKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAV 80 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g-~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~ 80 (121)
...|+|++.. +.||.... ... +.|.|+|+|++...-. ..+++||.|...+..++++|..|.
T Consensus 72 ~~~g~V~~v~--~~~GaFVd--iG~~~~d~lvp~sel~~~~~---~~~~~Gd~v~v~l~iD~~~Ri~ls 133 (285)
T 3go5_A 72 FGWGRVTEVR--KDLGVFVD--TGLPDKEIVVSLDILPELKE---LWPKKGDQLYIRLEVDKKDRIWGL 133 (285)
T ss_dssp CEEEEEEEEE--TTTEEEEE--CSCTTCCEEEEGGGSCSSGG---GSCCTTCEEEEEEEECTTSCEEEE
T ss_pred EEEEEEEEEc--cCceEEEE--ECCCCcEEEEEHHHCCcccc---cccCCCCEEEEEEEECCCCcEEEE
Confidence 4689999974 46887666 333 4799999999864322 468999999877877777755543
No 23
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.49 E-value=0.27 Score=41.39 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=54.6
Q ss_pred eeeeEEEEeeCCCCeEEEEecC---CCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCC-C-ceEEEEEEcCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIG---DDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG-R-REAVHIKIFDT 87 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~---d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kG-k-~~A~~V~~~~~ 87 (121)
...|++.-. ..||||+...+ ..+..|||+..+.++..+ |+.||.|+=.+.....| + ..-..|..++.
T Consensus 57 ~~~g~le~~--~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~------lr~gd~v~g~~r~~~~~e~~~~l~~v~~vng 128 (427)
T 3l0o_A 57 FGEGVLEIH--PEGFGFLRRIEDNLLPSNDDIYISPSQIRKFN------LNTGDIISGVIRKPKEGEKYFAMIKIEAINY 128 (427)
T ss_dssp EEEEEEEEC--TTSCEEEECGGGTTCCCSSCEEECHHHHHHTT------CCTTCEEEEEEECCCSSSCSEEEEEEEEETT
T ss_pred eEEEEEEEc--CCCceEeeCCccCCCCCCCCeeeCHHHHHhcC------CCCCCEEEEEEeCCCCCcccccceEEEecCC
Confidence 347877765 47999999831 256789999999999886 79999999988876554 3 33446777776
Q ss_pred ccccccccccccc
Q psy12844 88 RLYLEDLRTCSVD 100 (121)
Q Consensus 88 ~~~~~~~~~~~~~ 100 (121)
..+.+...+...+
T Consensus 129 ~~p~~~~~r~~fe 141 (427)
T 3l0o_A 129 RPVEAVNDRVNFD 141 (427)
T ss_dssp EEC----CCCCGG
T ss_pred CChHHhccccccc
Confidence 5555544443333
No 24
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=92.30 E-value=1.2 Score=30.04 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=39.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccC--CCCcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG--TDNILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~--g~~~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+...+ ||+... .+++-+-|+|++++... ..+....++.||.|...+..-+
T Consensus 33 ~~~G~V~~v~~---~G~FV~--l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 33 KLTGRVTNLTD---YGCFVE--IEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp EEEEEEEEEET---TEEEEE--CSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEEC---CEEEEE--ECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 57899999753 886666 44457999999999642 1111246899999999988743
No 25
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=90.54 E-value=1.3 Score=34.89 Aligned_cols=53 Identities=13% Similarity=-0.032 Sum_probs=41.0
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEE
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAV 80 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~ 80 (121)
..+|+|+.. ..||+... .+ +.++|+|.+.+. . ++||.|+.-+-.+.++++.|.
T Consensus 9 ~v~g~V~~~---~~~G~fv~--~~-g~egllp~se~~-------~--~vGdevev~v~~d~~~r~iat 61 (285)
T 3go5_A 9 FIVGLIIDE---NDRFYFVQ--KD-GQTYALAKEEGQ-------H--TVGDTVKGFAYTDMKQKLRLT 61 (285)
T ss_dssp EEEEEEEEE---CSSEEEEE--ET-TEEEEEEGGGCC-------C--CTTSEEEEEEEECTTSCEEEE
T ss_pred EEEEEEEEE---ECCEEEEE--cC-CeEEEEEHHHCc-------c--ccCCEEEEEEEECCCCCEEEe
Confidence 367899987 45887776 44 469999999983 3 899999988887777766663
No 26
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.31 E-value=0.68 Score=38.93 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=48.7
Q ss_pred eeeEEEEeeCCCCeEEEEecC---CCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCC-C-ceEEEEEEcCCc
Q psy12844 14 VSGVIQFFNKERGFGFINRIG---DDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG-R-REAVHIKIFDTR 88 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~---d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kG-k-~~A~~V~~~~~~ 88 (121)
..|++.-. ..||||+...+ ..+..|||+..+.++..+ |+.||.|+=.+.....+ | ..-.+|..++..
T Consensus 54 ~~g~le~~--~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~------lr~gd~v~g~~r~~~~~ER~faLl~v~~vn~~ 125 (422)
T 3ice_A 54 GDGVLEIL--QDGFGFLRSADSSYLAGPDDIYVSPSQIRRFN------LRTGDTISGKIRPPKEGERYFALLKVNEVNFD 125 (422)
T ss_dssp EEEEEEEC--TTSCEEEECGGGTTCCCTTCEEBCHHHHHHHT------CCTTCEEEEEEECCCSSCCSEEEEEEEEESSS
T ss_pred EEEEEEEc--CCCceEeeCCCcCCCCCCCCeeeCHHHHHhcC------CCCCCEEEEEEeCCCccchHHHHhccCcccCC
Confidence 46887765 47999999831 246689999999999876 79999999888876554 3 233345555443
Q ss_pred c
Q psy12844 89 L 89 (121)
Q Consensus 89 ~ 89 (121)
.
T Consensus 126 ~ 126 (422)
T 3ice_A 126 K 126 (422)
T ss_dssp C
T ss_pred C
Confidence 3
No 27
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=90.12 E-value=1 Score=31.26 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=40.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC--CC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP--GG 75 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~--kG 75 (121)
.+.|+|+... .||+... .+++.+-|+|++++...-.. ....+++||.|...+..-+ +|
T Consensus 10 iv~G~V~~i~---~~G~FV~--l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~~~~ 70 (130)
T 2k4k_A 10 VYTGKVTGLQ---AYGAFVA--LDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDEEKG 70 (130)
T ss_dssp EEEEEEEEEE---TTEEEEE--EETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEETTTT
T ss_pred EEEEEEEEEe---CCeEEEE--ECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeCCCC
Confidence 4689999984 4786666 33457999999999643111 2246899999999887643 55
No 28
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.74 E-value=1.6 Score=29.92 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=39.0
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEEC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~ 72 (121)
.+.|+|+... .||+...+ ++.+.+-|+|++++...-+. ....++.||.|...+..-
T Consensus 25 iv~G~V~~I~---~fGaFV~l-~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~v 81 (119)
T 2cqo_A 25 IFQGEVAMVT---DYGAFIKI-PGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGR 81 (119)
T ss_dssp EEEEEEEEEE---TTEEEEEC-TTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEe---CceEEEEE-CCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEE
Confidence 5789999985 38865551 33246899999999643221 113489999999988764
No 29
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=88.65 E-value=1.4 Score=29.26 Aligned_cols=56 Identities=11% Similarity=-0.018 Sum_probs=39.3
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+... .||+... .+.+-+-|+|++++...-.. ....+++||.|...+..-+
T Consensus 34 iv~G~V~~v~---~~G~fV~--l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 34 IVTGKVTAVD---AKGATVE--LADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp EEEEEEEEEC---SSCEEEE--CSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEE---CCeEEEE--ECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 5789999984 4676655 33346899999999643210 1246899999999887743
No 30
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=86.85 E-value=1.6 Score=31.35 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=37.5
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccC-CCC--c--------ccCCCCCCEEEEEEEEC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG-TDN--I--------LRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~-g~~--~--------~~~l~~G~~V~F~i~~~ 72 (121)
.+.|+|+.-. .||+-.. -.. .|.|+|+|.+... .+. . ...++.||.|.+.+..-
T Consensus 86 v~~G~V~~v~---~fG~FV~--l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (171)
T 1y14_B 86 VVDGTVVSCS---QHGFEVQ--VGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC 150 (171)
T ss_dssp EEEEEEEEEE---TTEEEEE--ETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEE
T ss_pred EEEEEEEEEe---cCEEEEE--ecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEE
Confidence 4689999975 4898777 444 7999999998522 110 0 03478899999887764
No 31
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.35 E-value=1.9 Score=28.49 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=40.1
Q ss_pred eeeeeEEEEeeCCCCeE-EEEecCCC--CcccEEEEccccccCCC--CcccCCCCCCEEEEEEEECCCC
Q psy12844 12 VYVSGVIQFFNKERGFG-FINRIGDD--GRKDYFFHFSEIQGGTD--NILRAIKYSLLVIFDIGVTPGG 75 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfG-FI~~~~d~--g~~dVFfH~s~l~~~g~--~~~~~l~~G~~V~F~i~~~~kG 75 (121)
..+.|+|+.. ..|| |+.- ++ ++.+-|+|+|++..... +....++.||.|...+..-+.+
T Consensus 14 ~i~~G~V~~v---~~fG~FV~l--~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~~ 77 (103)
T 2eqs_A 14 DIYNGKVTSI---MQFGCFVQL--EGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTGT 77 (103)
T ss_dssp CEEEEEEEEE---CSSCEEEEE--CSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEETT
T ss_pred CEEEEEEEEE---eccEEEEEE--cCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEECC
Confidence 3578999987 4488 5555 43 25689999999942211 0113589999999998876555
No 32
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=86.06 E-value=3 Score=31.52 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=38.9
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccC-CCCcc----------cCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG-TDNIL----------RAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~-g~~~~----------~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.-. .||+... ... .|.|+|+|.+... .+... ..++.||.|.+.+..-+
T Consensus 86 v~~G~V~~vt---~fG~FVe--lg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd 151 (215)
T 2b8k_G 86 VVDGTVVSCS---QHGFEVQ--VGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI 151 (215)
T ss_dssp EEEEEEEEEE---TTEEEEE--CTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEE
T ss_pred EEEEEEEEEe---cceEEEE--ecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEEE
Confidence 4689999875 4998887 444 7999999999532 11000 23788999999987643
No 33
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=85.82 E-value=1.4 Score=28.63 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=39.3
Q ss_pred eeeEEEEeeCCCCeEEEEecCCCCc--------ccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEc
Q psy12844 14 VSGVIQFFNKERGFGFINRIGDDGR--------KDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIF 85 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~d~g~--------~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~ 85 (121)
..|+|+..|... |+- ..+. ----|...+= ..+ ..|++||+|.|++.....|.+.-..++..
T Consensus 6 ~~G~V~~vd~~~----iTi--~H~pI~~l~wPaMTM~F~v~~~--~~l---~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 6 AVGRIQSIGERS----LII--AHEAIPSAQWGAMTMEFAAPPA--GLP---QGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp EEEEEEECCSSE----EEE--EECCCTTTTCCCEEEEEECCTT--CCC---SSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred EeEEEEEEcccc----EEE--ecCCccccCCCceEEEEEcCCh--hHh---hcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 589999998765 554 2211 1122333221 123 67999999999999987744776666654
Q ss_pred C
Q psy12844 86 D 86 (121)
Q Consensus 86 ~ 86 (121)
+
T Consensus 75 ~ 75 (82)
T 2l55_A 75 V 75 (82)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=85.32 E-value=0.53 Score=30.72 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=36.4
Q ss_pred eeeeEEEEeeCCCCeE-EEEecCCC-CcccEEEEcc-ccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFG-FINRIGDD-GRKDYFFHFS-EIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfG-FI~~~~d~-g~~dVFfH~s-~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+ . ..|| |+.- ++ ++.+=++|+| ++...-+. .-..+ .||.|...+..-+
T Consensus 14 ~~~G~V~-v---~~fG~FVel--~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~vd 71 (88)
T 1luz_A 14 VIKGRVY-E---KDYALYIYL--FDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRVD 71 (88)
T ss_dssp EEEEEEE-E---ETTEEEEEE--TTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEEE
T ss_pred EEEEEEE-E---EccEEEEEE--CCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEEE
Confidence 3789999 6 4688 5555 54 3578999999 88532110 01235 9999999888743
No 35
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=84.45 E-value=1.5 Score=28.34 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=38.3
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCc--------ccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEE
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGR--------KDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKI 84 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~--------~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~ 84 (121)
...|+|+..|...|- |+- ..+. .-.-|...+= ..+ ..|++||+|.|++.....| +.-..+++
T Consensus 9 ~~~G~V~~id~~~~~--iTi--~H~pI~~l~wpaMTM~F~v~~~--~~l---~~lk~Gd~V~F~~~~~~~~-~~it~i~~ 78 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--ITI--HHDPIAAVNWPEMTMRFTITPQ--TKM---SEIKTGDKVAFNFVQQGNL-SLLQDIKV 78 (80)
T ss_dssp EEEEEEEEEETTTTE--EEE--EECCBGGGTBCSEEEEEECCTT--CEE---CCCCTTCEEEEEEEEETTE-EEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEE--EcCCcccCCCCceEEEEEccCh--hhh---hcCCCCCEEEEEEEEeCCE-EEEEEEEe
Confidence 468999999976654 554 2221 1122333221 112 6799999999999987766 66555543
No 36
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=83.60 E-value=1.5 Score=28.77 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=38.3
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCc--------ccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEE
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGR--------KDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKI 84 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~--------~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~ 84 (121)
...|+|+..|...|- |+- ..+. --.-|...+= ..+ ..|++||+|.|++.....| +.-..+++
T Consensus 17 ~~~G~V~~id~~~~~--iTi--~H~pI~~l~wpaMTM~F~v~~~--~~l---~~lk~Gd~V~F~~~~~~~~-~~it~i~~ 86 (88)
T 2vb2_X 17 SATGVVKGIDLESKK--ITI--HHDPIAAVNWPEMTMRFTITPQ--TKM---SEIKTGDKVAFNFVQQGNL-SLLQDIKV 86 (88)
T ss_dssp EEEEEEEEEETTTTE--EEE--EECCBGGGTBCSEEEEEECCTT--CEE---CCCCTTCEEEEEEEEETTE-EEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--EEE--ecCCcccCCCCceEEEEEcCCh--hhh---hcCCCCCEEEEEEEEeCCE-EEEEEEEe
Confidence 468999999977654 544 2211 1122333221 112 6799999999999987665 66555543
No 37
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=83.25 E-value=5.7 Score=33.97 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=45.2
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC---------C-cccCCCCCCEEEEEEEECCCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD---------N-ILRAIKYSLLVIFDIGVTPGG 75 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~---------~-~~~~l~~G~~V~F~i~~~~kG 75 (121)
.+.|+|+..-+--+--||.- ..+ .+-|+|++++...-+ + .-..|++||.|.-.+...+.|
T Consensus 48 IY~GkV~rv~p~~~aAFVdi--G~g-k~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g 117 (517)
T 2bx2_L 48 IYKGKITRIEPSLEAAFVDY--GAE-RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 117 (517)
T ss_dssp EEEEEEEEEETTTTEEEEES--SSS-SCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCT
T ss_pred EEEEEEEEeccCCceEEEEe--CCC-cEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccc
Confidence 58999999987777899998 554 689999999852210 0 012488999999999997654
No 38
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=82.45 E-value=4.2 Score=29.93 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=35.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCC-CCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGD-DGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d-~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.. ..||+...+ + .++-+=|+|+|++...-.. +...++.||.|...+..-+
T Consensus 18 iv~G~V~~I---~~fGaFV~L-~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD 76 (182)
T 1kl9_A 18 VVMVNVRSI---AEMGAYVSL-LEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVD 76 (182)
T ss_dssp EEEEEEEEE---CSSEEEEEE-TTTTTEEEEEEGGGC------------CTTCEEEEEEEEEE
T ss_pred EEEEEEEEE---eccEEEEEE-ccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEE
Confidence 478999997 469955442 3 3557899999999643221 2256889999999887743
No 39
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=82.44 E-value=5.8 Score=31.64 Aligned_cols=57 Identities=12% Similarity=0.076 Sum_probs=40.4
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCC-CcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDD-GRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~-g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+...+ ||+...+ ++ ++-+-|+|+|++...... ....+++||.|...+..-+
T Consensus 16 iv~G~V~~I~~---fGaFV~L-~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD 74 (308)
T 1q8k_A 16 VVMVNVRSIQE---MGAYVSL-LEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVD 74 (308)
T ss_dssp EEEEEEEEEET---TEEEEES-CTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEE
T ss_pred EEEEEEEEEeC---cEEEEEE-CCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEe
Confidence 47899999854 8855552 32 467999999999643211 2256889999999987754
No 40
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=82.24 E-value=3.7 Score=29.97 Aligned_cols=57 Identities=12% Similarity=-0.004 Sum_probs=36.1
Q ss_pred eeeeEEEEeeCCCCeEEEEecCC-CCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGD-DGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d-~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.. ..||....+ + .++-+-|+|+|++...... +...++.||.|...+..-+
T Consensus 18 iv~G~V~~i---~~fGaFV~L-~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd 76 (175)
T 2a19_A 18 IVMVNVQQI---AEMGAYVKL-LEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVD 76 (175)
T ss_dssp EEEEEEEEE---ETTEEEEEE-TTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEE
T ss_pred EEEEEEEEE---ecceEEEEE-cCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 478999987 568855552 4 2457899999999643221 2256889999999887743
No 41
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=81.45 E-value=4.4 Score=29.20 Aligned_cols=55 Identities=18% Similarity=0.114 Sum_probs=39.0
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC------------CcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD------------NILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~------------~~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.-. .||+... -.+ .+-|+|.|++....+ +....++.||.|.+.+..-+
T Consensus 84 v~~G~V~~v~---~~G~fV~--l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd 150 (187)
T 1go3_E 84 LIEGEVVDVV---EFGSFVR--LGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAIS 150 (187)
T ss_dssp EEEEEEEEEE---TTEEEEE--CSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEE
T ss_pred EEEEEEEEEe---CcEEEEE--EcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEE
Confidence 4789999975 4787777 433 689999999863211 01146889999999987643
No 42
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=78.64 E-value=8.8 Score=29.98 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.1
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCC-CcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDD-GRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~-g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+... .||....+ ++ ++-+-|+|+|++...-.. ....++.||.|...+..-+
T Consensus 14 iv~G~V~~I~---~fGaFV~L-~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD 72 (275)
T 3aev_A 14 FVVATVKRIH---NYGAFLEL-DEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVD 72 (275)
T ss_dssp EEEEEEEEEE---TTEEEEEE-TTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEEE---CcEEEEEE-CCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEE
Confidence 4789999984 47855542 43 457999999999643221 2246899999999987743
No 43
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=78.38 E-value=9.2 Score=27.34 Aligned_cols=55 Identities=18% Similarity=0.141 Sum_probs=40.1
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC------------CcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD------------NILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~------------~~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.-+ .||+-.. ... -+-++|.+.+..+.+ ++-..++.||.|.+.+...+
T Consensus 84 v~~G~V~~v~---~~G~fv~--l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~ 150 (180)
T 4ayb_E 84 VVEGEVLQVD---NYGVFVN--LGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVA 150 (180)
T ss_dssp EEEEEEEEEE---TTEEEEE--CSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEEC
T ss_pred EEEEEEeeec---cceEEEE--ECC-ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEe
Confidence 4679999875 4787777 443 689999999975432 11246899999999988643
No 44
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=76.66 E-value=4.8 Score=28.69 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=36.6
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccC-CCCc------------ccCCCCCCEEEEEEEEC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG-TDNI------------LRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~-g~~~------------~~~l~~G~~V~F~i~~~ 72 (121)
.+.|+|+.-. .||+... -... +.|+|+|.+... .+.. ...++.||.|.+.+..-
T Consensus 84 v~~G~V~~v~---~fG~fV~--l~~~-~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~v 150 (172)
T 2c35_B 84 VVDAVVTQVN---KVGLFTE--IGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGT 150 (172)
T ss_dssp EEEEEEEEEE---TTEEEEE--ETTE-EEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEE
T ss_pred EEEEEEEEEe---CCEEEEE--ECCE-EEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEE
Confidence 3688999875 5888877 4444 599999988522 0100 12477899999887764
No 45
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=74.74 E-value=3 Score=30.08 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=36.1
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccC-CCC----------cccCCCCCCEEEEEEEEC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG-TDN----------ILRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~-g~~----------~~~~l~~G~~V~F~i~~~ 72 (121)
.+.|+|+.-. .||+-.. -+. -+.|+|.+.+... .+. .-..++.||.|.+.+..-
T Consensus 87 v~~G~V~~v~---~fG~FV~--l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~v 151 (172)
T 3h0g_G 87 VVDAIVTTVN---KMGFFAN--IGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGT 151 (172)
T ss_dssp EEECCCCEEE---TTEEECC--BTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEE
T ss_pred EEEEEEEEEE---cceEEEE--eCC-eEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEE
Confidence 3567777765 4898877 444 4699999999422 110 013578899999888764
No 46
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=72.94 E-value=18 Score=24.08 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=37.6
Q ss_pred ceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc------cCCCCcccCCCCCCEEEEEEEECCC
Q psy12844 9 IEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ------GGTDNILRAIKYSLLVIFDIGVTPG 74 (121)
Q Consensus 9 ~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~------~~g~~~~~~l~~G~~V~F~i~~~~k 74 (121)
.+-..+.|+|+.. ..||++..+ ..++.+.|.|.+... ..+ ..++.||.|...+..-+.
T Consensus 20 ~~G~i~~G~V~~v---~~fG~fV~l-~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 20 KPGMLLTGTVSSL---EDHGYLVDI-GVDGTRAFLPLLKAQEYIRQKNKG----AKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp CTTCEEEEEEEEE---CSSEEEEEC-CCSSCEEEEEHHHHHHHHHHHSSS----CCCCTTCEEEEEEEECCT
T ss_pred CCCCEEEEEEEEE---eCceEEEEE-CCCCeEEEEEEecccccccccCcc----CEeCCCCEEEEEEEEEeC
Confidence 3344579999997 578966652 323445555554431 122 579999999999988653
No 47
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=72.50 E-value=21 Score=25.28 Aligned_cols=70 Identities=9% Similarity=0.072 Sum_probs=50.0
Q ss_pred eeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCCccccc
Q psy12844 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLYLE 92 (121)
Q Consensus 15 ~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~~~~~~ 92 (121)
.|.|.+-.....+=|... |+++..|-|.++.+..+. .++|+.|.-+=.-.+.|...|.+|..-..+.|.+
T Consensus 43 ~GSv~r~~~~~~v~F~vt--D~~~~~v~V~Y~GilPDl------FrEGqgVVa~G~l~~~g~F~A~eVLaKhdekY~p 112 (136)
T 1j6q_A 43 VGSMVRDPNSLHVQFAVH--DSLGGEILVTYDDLLPDL------FREGQGIVAQGVLGEDGKLAATEVLAKHDENYMP 112 (136)
T ss_dssp TTCCEECTTSSCEEEEEE--CTTCCCEEEEECSCCTTS------CCSSSEEEEEEEECSTTSEEEEEEECCC------
T ss_pred CCcEEecCCCCEEEEEEE--cCCCCEEEEEECCCCCcc------ccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 355555434557999999 745679999999988664 5999999987777777889999998877766654
No 48
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=68.56 E-value=5.2 Score=31.03 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCC-CcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDD-GRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~-g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+..- .||....+ ++ ++.+-|+|+|++...... ....++.||.|...+...+
T Consensus 14 iv~G~V~~I~---~~GaFV~l-~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~vd 72 (266)
T 3cw2_C 14 ILIATVKQVF---DYGSYVSL-DEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVD 72 (266)
T ss_dssp EEEEEEEECC---SSSBEEEE-TTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCCC
T ss_pred EEEEEEEEEe---ccEEEEEE-cCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEEe
Confidence 5789999974 37744442 42 457899999999643221 1134889999999887754
No 49
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=66.46 E-value=27 Score=25.15 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=37.9
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCC---------CcccEEEEccccccCCC-CcccCCCCCCEEEEEEEE
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDD---------GRKDYFFHFSEIQGGTD-NILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~---------g~~dVFfH~s~l~~~g~-~~~~~l~~G~~V~F~i~~ 71 (121)
....|+|+.-. .||+...+ .. .+.+=++|++++..... +....+++||.|.-.+..
T Consensus 59 diV~G~V~~V~---~~ga~V~I-~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~ 124 (179)
T 3m7n_A 59 DVVLGRVVDLR---NSIALIEV-SSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG 124 (179)
T ss_dssp CEEEEEEEEEC---SSEEEEEE-EEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE
T ss_pred CEEEEEEEEEe---CCcEEEEE-ccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC
Confidence 35689999874 45555442 21 14688999999975421 123568999999998886
No 50
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=63.38 E-value=45 Score=25.03 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=39.7
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCC--CCcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGT--DNILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g--~~~~~~l~~G~~V~F~i~~~~ 73 (121)
...|+|..- ..+|+... -++..+-++|++++.... .+....+++||.|...+..-.
T Consensus 60 iV~G~V~~v---~~~~a~V~--I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~ 117 (229)
T 2ba0_A 60 VVIGIIREV---AANGWAVD--IYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNID 117 (229)
T ss_dssp EEEEEEEEE---CSSEEEEE--CSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEEC
T ss_pred EEEEEEEEE---eCCeEEEE--eCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEEC
Confidence 467888886 44566666 444468899999998431 112357999999999887754
No 51
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=63.28 E-value=30 Score=22.96 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=48.7
Q ss_pred eeEEEEeeCCCCeEEEEecCCC--CcccEEEEccccccCCCCcccCCCCCCEEEEEEEECC-CCCceEEEEEEcC
Q psy12844 15 SGVIQFFNKERGFGFINRIGDD--GRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP-GGRREAVHIKIFD 86 (121)
Q Consensus 15 ~G~Vkwfn~~kGfGFI~~~~d~--g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~-kGk~~A~~V~~~~ 86 (121)
.|.|+|-......=|... |. .+..|-|.++.+..+. +++|+.|.-+=.-.+ .|...|.+|..-.
T Consensus 19 ~GSv~r~~~~~~v~F~vt--D~~~~~~~v~V~Y~GilPDl------FrEGqgVV~~G~l~~~~g~F~A~evLaKh 85 (94)
T 2kct_A 19 ADGLTMLDGAPGVRFRLE--DKDNTSKTVWVLYKGAVPDT------FKPGVEVIIEGGLAPGEDTFKARTLMTKC 85 (94)
T ss_dssp STTCEECTTSSEEEEEEE--CSSCTTCEEEEEEESCCCTT------CCTTCEEEEEEEECTTCSEEEEEEEEESS
T ss_pred CCeEEecCCCCEEEEEEE--cCCCCCcEEEEEECCCCCcc------ccCCCeEEEEEEEeCCCCEEEEeEEEEeC
Confidence 566676544567899998 54 3578999999988654 599999998877776 7889999887543
No 52
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=62.55 E-value=15 Score=31.73 Aligned_cols=57 Identities=12% Similarity=-0.025 Sum_probs=37.7
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEcccccc--CC--C---------CcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG--GT--D---------NILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~--~g--~---------~~~~~l~~G~~V~F~i~~~~ 73 (121)
...|+|.... .||+...+ ++.+-+.|+|++.|.. .- + +....++.||.|.-.+..-+
T Consensus 563 ~f~g~V~~V~---~~G~fV~L-~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd 632 (644)
T 2id0_A 563 RFAAEIVDIS---RGGMRVRL-VDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVR 632 (644)
T ss_dssp CEEEEEEEEE---TTEEEEEE-TTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEE
T ss_pred eEEEEEEEEe---CCceEEEE-cCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEe
Confidence 4689999875 47765542 4556799999999852 10 0 00135788999988877643
No 53
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=59.72 E-value=33 Score=26.23 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=38.9
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC----CcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD----NILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~----~~~~~l~~G~~V~F~i~~~~ 73 (121)
...|+|..- ..||+... .++..+-++|++++..... +....+++||.|...+..-.
T Consensus 77 iV~G~V~~v---~~~ga~Vd--I~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~ 136 (251)
T 2je6_I 77 IVIGLVEDV---EIYGWVVD--IKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFD 136 (251)
T ss_dssp EEEEEEEEE---CSSEEEEE--CSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEE
T ss_pred EEEEEEEEE---eCceEEEE--cCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEEC
Confidence 467888887 44566666 4445689999999984321 01136899999998887644
No 54
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=58.50 E-value=13 Score=32.77 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=35.8
Q ss_pred eeeeEEEEeeCCCCe--EEEEecCCCCcccEEEEc-cccccCCCCcccCCCCCCEEEEEEEE
Q psy12844 13 YVSGVIQFFNKERGF--GFINRIGDDGRKDYFFHF-SEIQGGTDNILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 13 m~~G~Vkwfn~~kGf--GFI~~~~d~g~~dVFfH~-s~l~~~g~~~~~~l~~G~~V~F~i~~ 71 (121)
.++|++.- | .+|| ||+.. +++++|||+.- .++- .-=.||.|..++..
T Consensus 32 l~~G~l~~-~-~~~~~~gfv~~--~~~~~di~I~~~~~~n--------~A~~GD~V~V~i~~ 81 (760)
T 2vnu_D 32 LYQGNIQI-S-EYNFLEGSVSL--PRFSKPVLIVGQKNLN--------RAFNGDQVIVELLP 81 (760)
T ss_dssp EEEEEEEE-C-SSBTTEEEECC--SSSSSCEEEESHHHHT--------TCCTTCEEEEEECC
T ss_pred EEEEEEEE-e-cCCCccEEEEc--CCCCCCEEEcChhhhc--------cccCCCEEEEEEec
Confidence 46898886 3 5899 99999 77678999997 5553 23479999988764
No 55
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=56.40 E-value=44 Score=27.01 Aligned_cols=51 Identities=16% Similarity=-0.040 Sum_probs=37.8
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECC
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.+|+|+..+ ++.=|+.. |+-+-|+|.+++.. + ..++.||+|..-+..-.
T Consensus 136 eIV~G~V~ri~--~~~v~VDl----Gk~EgiLp~sE~ip-~----E~~~vGD~Vkv~V~~V~ 186 (344)
T 1hh2_P 136 TVTTAEVIRVM--GEWADIRI----GKLETRLPKKEWIP-G----EEIKAGDLVKVYIIDVV 186 (344)
T ss_dssp CEEEEEEEEEC--SSEEEEEE----TTEEEEEEGGGSCT-T----CCCCTTCEEEEEEEEEE
T ss_pred CEEEEEEEEEe--cCcEEEEe----CCeEEEEeHHHcCC-C----cCCCCCCEEEEEEEEEE
Confidence 46899999985 34334444 35799999999973 3 57999999998877543
No 56
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=55.21 E-value=51 Score=24.67 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=39.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCC-----CCcccCCCCCCEEEEEEEECCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGT-----DNILRAIKYSLLVIFDIGVTPG 74 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g-----~~~~~~l~~G~~V~F~i~~~~k 74 (121)
...|+|..- ..+|+... -+...+-++|++++.... .+....+++||.|...+..-.+
T Consensus 69 iV~G~V~~v---~~~~~~V~--I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 69 VVIGLIQSV---GIMNWFVD--INSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp CEEEEEEEE---CSSEEEEE--CSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred EEEEEEEEE---eCCeEEEE--eCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 468899887 44566666 444568999999997521 1112368999999998877543
No 57
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=55.10 E-value=57 Score=23.62 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=41.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCC-cccEEEEccccccCCCCcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDG-RKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g-~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~ 73 (121)
...|+|..- .++++... -.. ..+-++|+++|.+........|++||.|.-.+..-.
T Consensus 10 vViG~V~~v---~~~~~~Vd--I~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~ 66 (175)
T 2ja9_A 10 FVIGVIIGT---FSDSYKVS--LQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE 66 (175)
T ss_dssp EEEEEEEEE---CSSEEEEE--SSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECC
T ss_pred EEEEEEEEE---ECcEEEEE--ECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEec
Confidence 467888875 66778777 455 578999999998544334467999999998887654
No 58
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=53.09 E-value=44 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=22.4
Q ss_pred cccEEEEccccccCCCCcccCCCCCCEEEEEEEEC
Q psy12844 38 RKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 38 ~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~ 72 (121)
+..||||.+ .+.-+ ..+..+.+|.|++...
T Consensus 55 ~~~lyf~ta--~~~K~---~~l~~np~V~~~v~~~ 84 (148)
T 3cp3_A 55 QPRVYFRTA--EGTKL---FSVNLNSDVLFEVDRF 84 (148)
T ss_dssp SCEEEEEEC----CCS---SCTTSCSEEEEEEEEC
T ss_pred CCEEEEEcC--CCchH---HHHhcCCcEEEEEEEC
Confidence 358999988 44444 6788899999999874
No 59
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=52.57 E-value=49 Score=22.10 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=37.7
Q ss_pred ccceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEE
Q psy12844 7 KIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIF 67 (121)
Q Consensus 7 ~~~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F 67 (121)
.+-+++..-|+|..-.++. ...|.. .. +..+|+.++...... .|++|++|-.
T Consensus 32 ~L~~~P~~Vg~v~e~~d~~-~~iVk~--s~-g~~~~V~v~~~Vd~~-----~LkpG~rVaL 83 (109)
T 2wg5_A 32 RLRSPPLLVGVVSDILEDG-RVVVKS--ST-GPKFVVNTSQYINEE-----ELKPGARVAL 83 (109)
T ss_dssp HHHSCCEEEEEEEEECTTS-CEEEEE--TT-SCEEEECBCTTSCTT-----TCCTTCEEEE
T ss_pred HHhCCCceEEEEEEEecCC-EEEEEe--CC-CCEEEEEcccccCHH-----HCCCCCEEEE
Confidence 3446677889998887544 445555 44 468999998887653 6999999985
No 60
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=52.26 E-value=43 Score=31.50 Aligned_cols=56 Identities=5% Similarity=-0.038 Sum_probs=41.1
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCC--CCcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGT--DNILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g--~~~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.. ..||.... .+.+-+=++|+|.+.... .++...+++||.|...+..-+
T Consensus 905 iv~G~V~~V---~~fGaFV~--L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD 962 (1219)
T 3psi_A 905 IIPVRVERF---WHNDIICT--TNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYID 962 (1219)
T ss_dssp EEEEEEEEE---CSSCEEEE--CTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEE
T ss_pred EEEEEEEEE---ecceEEEE--eCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEE
Confidence 468999986 55776666 444579999999997543 112356899999999888754
No 61
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=46.26 E-value=43 Score=24.89 Aligned_cols=55 Identities=27% Similarity=0.411 Sum_probs=35.4
Q ss_pred cccccceeeeeeeEEEEeeCCC-CeEEEEecCCCCcccEEEEc--c--ccccCCCCcccCCCCCCEEE
Q psy12844 4 HLGKIIEEVYVSGVIQFFNKER-GFGFINRIGDDGRKDYFFHF--S--EIQGGTDNILRAIKYSLLVI 66 (121)
Q Consensus 4 ~~~~~~~~~m~~G~Vkwfn~~k-GfGFI~~~~d~g~~dVFfH~--s--~l~~~g~~~~~~l~~G~~V~ 66 (121)
.-|+|.+| ..|+|....+.+ -||+.+ ++| -+|.+|+ . .|.+.+|. ...++||.|.
T Consensus 70 ~~g~v~AP--~dG~V~~vfpT~HAigi~s---~~G-~EvLIHIGiDTV~L~G~gF~--~~V~~Gd~Vk 129 (183)
T 3our_B 70 TGNKMVAP--VNGTIGKIFETNHAFSIES---DDG-VELFVHFGIDTVELKGEGFT--RIAEEGQTVK 129 (183)
T ss_dssp CSSEEECS--SSEEEEEECTTSSEEEEEE---TTS-CEEEEECSBSGGGGTTTTEE--ECSCTTCEEC
T ss_pred CCCEEEeC--CCeEEEEECCCCCEEEEEe---CCC-CEEEEEecccccccCCccce--EEEeCcCEEc
Confidence 44667666 689999887754 566544 444 6999995 3 34556652 4455677764
No 62
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=45.93 E-value=15 Score=22.84 Aligned_cols=12 Identities=33% Similarity=0.575 Sum_probs=9.7
Q ss_pred CCCeEEEEecCCCC
Q psy12844 24 ERGFGFINRIGDDG 37 (121)
Q Consensus 24 ~kGfGFI~~~~d~g 37 (121)
.+|||||+- .+.
T Consensus 47 srGfaFV~F--~~~ 58 (89)
T 3d2w_A 47 FRAFAFVTF--ADD 58 (89)
T ss_dssp CCSEEEEEE--SCH
T ss_pred CCCEEEEEE--CCH
Confidence 589999999 553
No 63
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=45.05 E-value=30 Score=24.96 Aligned_cols=52 Identities=23% Similarity=0.360 Sum_probs=30.4
Q ss_pred cccceeeeeeeEEEEeeCCC-CeEEEEecCCCCcccEEEEcccc-----ccCCCCcccCCCCCCEEE
Q psy12844 6 GKIIEEVYVSGVIQFFNKER-GFGFINRIGDDGRKDYFFHFSEI-----QGGTDNILRAIKYSLLVI 66 (121)
Q Consensus 6 ~~~~~~~m~~G~Vkwfn~~k-GfGFI~~~~d~g~~dVFfH~s~l-----~~~g~~~~~~l~~G~~V~ 66 (121)
|+|..+ ..|+|....+++ -||+ .. ++| .+|.+|+ -+ .+.+| -...+.||+|.
T Consensus 50 ~~v~AP--~~G~V~~v~~t~hAigi-~t--~~G-~evLiHI-GidTV~l~G~gF--~~~V~~Gd~V~ 107 (162)
T 1ax3_A 50 GIVVSP--VRGKILNVFPTKHAIGL-QS--DGG-REILIHF-GIDTVSLKGEGF--TSFVSEGDRVE 107 (162)
T ss_dssp SEEEES--CCEEEEECCSSSSEEEE-ES--SSS-CEEEEEC-SSSTTTTTTTTE--EESCCCCSEEC
T ss_pred CcEECC--CCeEEEEEccCCeEEEE-Ec--CCC-CEEEEEE-CccchhcCCCcc--EEEEeCCCEEc
Confidence 444443 689999865544 5554 34 444 5899996 33 33333 23556677664
No 64
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=44.45 E-value=36 Score=24.34 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=21.8
Q ss_pred cccceeeeeeeEEEEeeCCC-CeEEEEecCCCCcccEEEEc
Q psy12844 6 GKIIEEVYVSGVIQFFNKER-GFGFINRIGDDGRKDYFFHF 45 (121)
Q Consensus 6 ~~~~~~~m~~G~Vkwfn~~k-GfGFI~~~~d~g~~dVFfH~ 45 (121)
|+|..+ ..|+|....+.+ -+|+ .. ++| .+|.+|+
T Consensus 45 ~~v~AP--~~G~V~~v~~t~HAigi-~~--~~G-~evLiHi 79 (154)
T 2gpr_A 45 NDFHAP--VSGKLVTAFPTKHAFGI-QT--KSG-VEILLHI 79 (154)
T ss_dssp SEEECS--SCEEEEECCTTCSEEEE-EC--TTS-CEEEEEC
T ss_pred CcEECC--CCeEEEEEccCCeEEEE-Ec--CCC-CEEEEEE
Confidence 444444 589999876654 4443 34 444 6999995
No 65
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=44.25 E-value=41 Score=24.25 Aligned_cols=34 Identities=29% Similarity=0.596 Sum_probs=22.0
Q ss_pred cccceeeeeeeEEEEeeCCC-CeEEEEecCCCCcccEEEEc
Q psy12844 6 GKIIEEVYVSGVIQFFNKER-GFGFINRIGDDGRKDYFFHF 45 (121)
Q Consensus 6 ~~~~~~~m~~G~Vkwfn~~k-GfGFI~~~~d~g~~dVFfH~ 45 (121)
|+|..+ ..|+|....+++ -||+ .. ++| .+|.+|+
T Consensus 50 ~~v~AP--~~G~V~~v~~t~hAigi-~t--~~G-~evLiHi 84 (161)
T 1f3z_A 50 NKMVAP--VDGTIGKIFETNHAFSI-ES--DSG-VELFVHF 84 (161)
T ss_dssp SEEECS--SSEEEEEECTTSSEEEE-EE--TTS-CEEEEEC
T ss_pred CcEECC--CCeEEEEEccCCeEEEE-Ee--CCC-CEEEEEE
Confidence 444433 589999876655 4554 44 454 5899995
No 66
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=43.19 E-value=31 Score=31.57 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=35.7
Q ss_pred eeeeEEEEeeCCCCe--EEEEecCCCCcccEEEEc-cccccCCCCcccCCCCCCEEEEEEEE
Q psy12844 13 YVSGVIQFFNKERGF--GFINRIGDDGRKDYFFHF-SEIQGGTDNILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 13 m~~G~Vkwfn~~kGf--GFI~~~~d~g~~dVFfH~-s~l~~~g~~~~~~l~~G~~V~F~i~~ 71 (121)
.++|++.- ..+|| ||+.. +++++|||+.- .++- .-=.||.|..++..
T Consensus 249 l~~G~l~v--~~~~~~egfV~~--~~~~~DI~I~~~~~~n--------~A~~GD~V~V~i~~ 298 (977)
T 2wp8_J 249 LYQGNIQI--SEYNFLEGSVSL--PRFSKPVLIVGQKNLN--------RAFNGDQVIVELLP 298 (977)
T ss_dssp SEEEEEEE--CSSBTTEEEECC--TTCSSCEEEESHHHHT--------TCCTTCEEEEEECC
T ss_pred EEEEEEEE--ccCCCccEEEEc--CCCCCCEEEcChHHhh--------hCcCCCEEEEEEec
Confidence 46888875 36899 99999 77778999997 4543 23479999988754
No 67
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=42.24 E-value=62 Score=24.15 Aligned_cols=53 Identities=17% Similarity=-0.019 Sum_probs=34.3
Q ss_pred eeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC---------------CcccCCCCCCEEEEEEEE
Q psy12844 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD---------------NILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~---------------~~~~~l~~G~~V~F~i~~ 71 (121)
+.|+|+.-+ .|||-.. .++.-+=+||.+++..+.+ .+...++.||.|.|.+..
T Consensus 85 ~~G~Is~Vt---~fGifVe--L~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~ 152 (218)
T 2ckz_B 85 VTGWISKCT---AEGIKVS--LLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIER 152 (218)
T ss_dssp EEEEEEEEE---TTEEEEE--CTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEE
T ss_pred EEEEEEEEc---cCcEEEE--ccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEE
Confidence 678888864 5787777 4333344678887754322 012457889999988776
No 68
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=40.97 E-value=70 Score=20.50 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=37.0
Q ss_pred cceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEE
Q psy12844 8 IIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIF 67 (121)
Q Consensus 8 ~~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F 67 (121)
+-+++..-|+|..--+ .+...+.. -.| .++|+-++..-.. ..|++|++|-.
T Consensus 14 L~~~P~~vG~v~e~~d-d~~~iVks--s~g-~~~~V~v~~~Vd~-----~~LkpG~rVaL 64 (85)
T 3h43_A 14 MRVPPLIVGTVVDKVG-ERKVVVKS--STG-PSFLVNVSHFVNP-----DDLAPGKRVCL 64 (85)
T ss_dssp HHSCCEEEEEEEEEEE-TTEEEEEE--TTS-SEEEEEBCTTSCG-----GGCCTTCEEEE
T ss_pred hcCCCceEEEEEEEcC-CCEEEEEe--CCC-CeEEEEecCccCH-----HHCCCCCEEEE
Confidence 4456677888888754 45566665 444 6999999998755 46999999963
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.59 E-value=16 Score=24.30 Aligned_cols=9 Identities=22% Similarity=0.387 Sum_probs=8.2
Q ss_pred CCCeEEEEe
Q psy12844 24 ERGFGFINR 32 (121)
Q Consensus 24 ~kGfGFI~~ 32 (121)
.||||||..
T Consensus 51 ~kGfaFVeF 59 (105)
T 1sjq_A 51 GKNQAFIEM 59 (105)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 489999998
No 70
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=39.69 E-value=6.1 Score=35.01 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=0.0
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC-CCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP-GGR 76 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~-kGk 76 (121)
.+.|+|+.. ..||.... -.++.+-|+|+|.+...-.. .-..++.||.|.-.+..-+ +|+
T Consensus 630 i~~G~V~~i---~~fGaFVe--l~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~vd~~gr 690 (723)
T 3cdi_A 630 VYTGKVTRI---VDFGAFVA--IGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGR 690 (723)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEEEEEEE---ecceEEEE--eCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEECCCCc
Confidence 468999987 56995444 33347999999999653211 1146889999998887643 563
No 71
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=39.47 E-value=52 Score=20.81 Aligned_cols=36 Identities=14% Similarity=0.190 Sum_probs=22.3
Q ss_pred ceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc
Q psy12844 9 IEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49 (121)
Q Consensus 9 ~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~ 49 (121)
+.-....|+|.|+|+. +=-+ . ++.+..+.+...++.
T Consensus 29 ~tG~~l~G~i~WQD~~--cl~L-~--~~~~~~~LI~r~AI~ 64 (70)
T 3hfo_A 29 LTGDSLFGTIRWQDTD--GLGL-V--DDSERSTIVRLAAIA 64 (70)
T ss_dssp TTSCEEEEEEEEECSS--EEEE-E--CTTCCEEEEEGGGEE
T ss_pred cCCCEEEEEEEEeCCC--EEEE-E--cCCCCeEEEEeeeeE
Confidence 3444689999999752 2222 2 333456888887774
No 72
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=37.72 E-value=82 Score=22.98 Aligned_cols=52 Identities=13% Similarity=-0.036 Sum_probs=33.5
Q ss_pred eeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC--------------------CcccCCCCCCEEEEEEEE
Q psy12844 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD--------------------NILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~--------------------~~~~~l~~G~~V~F~i~~ 71 (121)
..|+|+.-+ .||+-.. .+ .-+=.||.+++....+ .....++.||.|.|.+..
T Consensus 85 ~~G~Vs~vt---~~GifV~--lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~ 156 (203)
T 3ayh_B 85 MLGKIKSCS---EEGIRVT--IS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIES 156 (203)
T ss_dssp EEEEEEEEE---TTEEEEE--CS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEE
T ss_pred EEEEEEEEe---ccEEEEE--Ee-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEE
Confidence 678888874 5787777 42 2344577777743321 012458889999988776
No 73
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=36.85 E-value=23 Score=22.70 Aligned_cols=38 Identities=24% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCCceEEEEEEcCCccccc--ccccccccCCCcccccccc
Q psy12844 74 GGRREAVHIKIFDTRLYLE--DLRTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 74 kGk~~A~~V~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~ 111 (121)
+|+..|..=.=.....+++ .+....+.||+|++.=+..
T Consensus 32 ~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~ 71 (106)
T 3dqy_A 32 DGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVR 71 (106)
T ss_dssp TTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETT
T ss_pred CCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCC
Confidence 4545555433333344444 3455678999999886653
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=36.11 E-value=7.6 Score=34.55 Aligned_cols=59 Identities=20% Similarity=0.126 Sum_probs=0.0
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCC-cccCCCCCCEEEEEEEECC-CC
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDN-ILRAIKYSLLVIFDIGVTP-GG 75 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~-~~~~l~~G~~V~F~i~~~~-kG 75 (121)
..+.|+|+.. ..||.... -.++.+-++|+|.+...-+. .-..+++||.|.-.+..-+ +|
T Consensus 639 ~v~~G~V~~I---~~fGaFVe--l~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~iD~~g 699 (726)
T 4aid_A 639 KIYDGKVVKV---VDFGAFVN--FFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGFDDRG 699 (726)
T ss_dssp ------------------------------------------------------------------
T ss_pred cEEEEEEEEE---eccEEEEE--ECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEECCCC
Confidence 3578999987 67997666 44457999999999754221 1246899999998877644 55
No 75
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032}
Probab=36.11 E-value=1e+02 Score=21.02 Aligned_cols=68 Identities=15% Similarity=0.102 Sum_probs=38.2
Q ss_pred eeeEEEEeeCCCCeEEEEecC--CCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCCcccc
Q psy12844 14 VSGVIQFFNKERGFGFINRIG--DDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLYL 91 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~--d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~~~~~ 91 (121)
..|++-.-+ .|+=++.|.. -++ ..||||-+. +.-+ ..++.+.+|.|++...+.. .+-.|.+.+....+
T Consensus 22 ~~g~La~~~--dg~P~vvPv~f~~~~-~~iyfh~a~--g~K~---~~i~~~~~V~f~vd~~~~~--~~~SV~v~G~a~~v 91 (138)
T 3fkh_A 22 SLGRVVVRR--SDEMDIFPVNFIVDK-GAIYIRTAE--GNKL---FSMNLNHDVLFEADEVKDG--KAWSVVVRATAEIV 91 (138)
T ss_dssp SEEEEEEEE--TTEEEEEEEEEEEET-TEEEEEEEC-------------CCSEEEEEEEEEETT--EEEEEEEEEEEEEC
T ss_pred CEEEEEEee--CCEEEEEEEEEEEEC-CEEEEEeCC--ChHH---HHhhcCCCEEEEEEECCCC--CCEEEEEEEEEEEE
Confidence 468887764 6777777642 123 379999875 3333 6788999999999974321 22255555543333
No 76
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=35.34 E-value=21 Score=31.90 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=38.6
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC-CcccCCCCCCEEEEEEEECC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD-NILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~-~~~~~l~~G~~V~F~i~~~~ 73 (121)
.+.|+|+.. ..||+... .+.+.+-++|+|++...-. ++...++.||.|...+..-+
T Consensus 657 iv~G~V~~V---~~fGaFV~--l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkVi~VD 713 (785)
T 3bzc_A 657 VLEGVVTNV---TNFGAFVD--IGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVD 713 (785)
T ss_dssp BCCCEEEEE---ETTEEEEE--CSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBEEEEE
T ss_pred EEEEEEEEE---ecCCeEEE--eCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEEEEEE
Confidence 468999987 45886665 3334689999999974311 01235889999998877643
No 77
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=35.23 E-value=55 Score=23.15 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=51.1
Q ss_pred eeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCCccccc
Q psy12844 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLYLE 92 (121)
Q Consensus 15 ~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~~~~~~ 92 (121)
.|.|.+-.....+=|... |. +..|-|.++.+..+- .++|+.|.-+=.-.+.|...|.+|..-..+.|.+
T Consensus 39 ~GSv~r~~~~~~v~F~vt--D~-~~~v~V~Y~GilPDl------FrEGqgVVa~G~l~~~g~F~A~eVLAKhdekYmp 107 (136)
T 1sr3_A 39 PGSVQRDPNSLKVTFTIY--DA-EGSVDVSYEGILPDL------FREGQGVVVQGELEKGNHILAKEVLAKHDENYTP 107 (136)
T ss_dssp TTTCEECSSSSEEEEEEE--CS-SCEEEEEEESCCCTT------CCTTSEEEEEEEECSSSEEEESSCBCCSCCCCCC
T ss_pred CCcEEEcCCCCEEEEEEE--eC-CcEEEEEECCCCCcc------ccCCCeEEEEEEECCCCeEEEEEEEecCCCCCCC
Confidence 455665433456899999 75 468999999988654 5999999887777777878998887776666643
No 78
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=33.95 E-value=35 Score=27.08 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=31.5
Q ss_pred eeeEEEEeeCCCCeEEEEecC-CCCcccEEEEccccc-cCCCCcccCCCCCCEEEE
Q psy12844 14 VSGVIQFFNKERGFGFINRIG-DDGRKDYFFHFSEIQ-GGTDNILRAIKYSLLVIF 67 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~-d~g~~dVFfH~s~l~-~~g~~~~~~l~~G~~V~F 67 (121)
..|+|.+-....+||-...+. .++-.-+|.|.+.+. ..| +.++.||.|-+
T Consensus 249 ~~G~V~~~~~~~~~G~~v~i~h~~g~~t~Y~hl~~~~v~~G----~~V~~G~~Ig~ 300 (361)
T 2gu1_A 249 GDGKVIVVRKHPYAGNYLVIEHNSVYKTRYLHLDKILVKKG----QLVKRGQKIAL 300 (361)
T ss_dssp SSEEEEEEEEETTTEEEEEEECSSSEEEEEEEESEECCCTT----CEECTTCEEEE
T ss_pred eCEEEEEeEEeCCCCeEEEEEECCCEEEEEeCcCccccCCc----CEECCCCEEEE
Confidence 479999877778999543321 223355889998763 334 45666766653
No 79
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.05 E-value=25 Score=22.67 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=8.5
Q ss_pred CCCCeEEEEe
Q psy12844 23 KERGFGFINR 32 (121)
Q Consensus 23 ~~kGfGFI~~ 32 (121)
..+|||||+-
T Consensus 49 ~~kg~aFVef 58 (101)
T 2cq1_A 49 KGKNQAFLEL 58 (101)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 3589999998
No 80
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=32.82 E-value=37 Score=27.48 Aligned_cols=54 Identities=20% Similarity=0.341 Sum_probs=38.3
Q ss_pred eeeEEEEeeCCCCeEEEEecC-CCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEE
Q psy12844 14 VSGVIQFFNKERGFGFINRIG-DDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~-d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~ 71 (121)
..|+|..-....|||-...+. .++-.-+|.|.+.+...| ..++.||.|-+.=..
T Consensus 263 ~~G~V~~~~~~~g~G~~V~I~H~~g~~t~Y~HL~~~v~~G----~~V~~Gq~IG~vG~t 317 (371)
T 3slu_A 263 ADGVITFKGRKGGYGNAVMIRHANGVETLYAHLSAFSQAQ----GNVRGGEVIGFVGST 317 (371)
T ss_dssp SSSBEEEEEECGGGCEEEEEECSTTEEEEEEEESBCCCCC----SBCCSSSEEEECBCC
T ss_pred CCeEEEEEEecCCCccEEEEEECCcEEEEEecCcccCCCc----CEECCCCEEEEeCCC
Confidence 478998888788999544421 222345899999997777 579999998765433
No 81
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=32.38 E-value=6.8 Score=34.95 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=29.0
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEcccc----ccCCCC-cccCCCCCCEEEEEEEECC-CCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEI----QGGTDN-ILRAIKYSLLVIFDIGVTP-GGR 76 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l----~~~g~~-~~~~l~~G~~V~F~i~~~~-kGk 76 (121)
.+.|+|+.. ..||.... ..++.+-|+|+|.+ ...-.. .-..+++||.|.-.+..-+ +|+
T Consensus 670 i~~G~V~~i---~~fGaFV~--l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~~gr 734 (757)
T 1e3p_A 670 RILGSVVKT---TTFGAFVS--LLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGK 734 (757)
T ss_dssp ---CBEEEC---C-CSCEEC--CC---CCCCC-------------------CCSSCBCCCCCCCCCSSCC
T ss_pred EEEEEEEEc---cccEEEEE--EcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECCCCC
Confidence 578999986 67884444 33347999999999 432110 1146889999998877644 563
No 82
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=31.61 E-value=50 Score=20.85 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCCceEEEEEEcCCccccc--ccccccccCCCcccccccc
Q psy12844 74 GGRREAVHIKIFDTRLYLE--DLRTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 74 kGk~~A~~V~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~ 111 (121)
+|+..|..=.=.....+++ .+....+.||+|++.=+.+
T Consensus 34 ~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~ 73 (103)
T 2qpz_A 34 EGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVC 73 (103)
T ss_dssp TTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETT
T ss_pred CCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCC
Confidence 4545554433222333333 2345678999999887664
No 83
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=31.17 E-value=11 Score=24.34 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=21.8
Q ss_pred CCCceEEEEEEcCCccccc--ccccccccCCCcccccccc
Q psy12844 74 GGRREAVHIKIFDTRLYLE--DLRTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 74 kGk~~A~~V~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~ 111 (121)
+|+..|..=.=.....+++ .+....+.||+|++.=+..
T Consensus 35 ~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~ 74 (108)
T 2i7f_A 35 DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIA 74 (108)
T ss_dssp TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETT
T ss_pred CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCC
Confidence 5556665433333333333 2345678999999887653
No 84
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=30.53 E-value=42 Score=25.02 Aligned_cols=61 Identities=20% Similarity=0.311 Sum_probs=36.5
Q ss_pred CcccccccceeeeeeeEEEEeeCCC---CeEEEEecC-----CCCcccEEEEccccccCCCCcccCCCCCCEEEEE
Q psy12844 1 MKAHLGKIIEEVYVSGVIQFFNKER---GFGFINRIG-----DDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFD 68 (121)
Q Consensus 1 ~~~~~~~~~~~~m~~G~Vkwfn~~k---GfGFI~~~~-----d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~ 68 (121)
+|+|+++|-|+......|.=||... |||.+..+. .+...-|-+|+.|+- .-|+.++.+..+
T Consensus 114 fk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~vv~~q~D~G-------eYLR~e~~~~~~ 182 (188)
T 1sqw_A 114 LKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG-------EYVRHEETLTLE 182 (188)
T ss_dssp EGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEEEEEEEGG-------GTCSCC------
T ss_pred hHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcEEEEEcccce-------eeeEcCceeeee
Confidence 3789999999877665566666544 899985210 122236778999884 347777765543
No 85
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=29.78 E-value=48 Score=25.35 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=31.2
Q ss_pred eeeEEEEeeCCCCeEEEEecC-CCCcccEEEEccccc-cCCCCcccCCCCCCEEEE
Q psy12844 14 VSGVIQFFNKERGFGFINRIG-DDGRKDYFFHFSEIQ-GGTDNILRAIKYSLLVIF 67 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~-d~g~~dVFfH~s~l~-~~g~~~~~~l~~G~~V~F 67 (121)
..|+|.......+||-...+. .+|-.-+|.|.+.+. ..| ..++.||.|-.
T Consensus 100 ~~G~V~~~g~~~~~G~~ViI~Hg~G~~t~Y~HL~~i~Vk~G----d~V~~Gq~IG~ 151 (245)
T 3tuf_B 100 LSGTVVKAEKDPVLGYVVEVEHADGLSTVYQSLSEVSVEQG----DKVKQNQVIGK 151 (245)
T ss_dssp SCEEEEEEEEETTTEEEEEEECSTTEEEEEEEESEESCCTT----CEECTTCEEEE
T ss_pred cCeEEEEEEecCCCceEEEEEeCCCEEEEEecCCccccCCC----CEECCCCEEEE
Confidence 579999887778888755421 222235789998753 233 35666666543
No 86
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=29.26 E-value=33 Score=21.39 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=13.8
Q ss_pred eeEEEEeeCCCCeEEEEe
Q psy12844 15 SGVIQFFNKERGFGFINR 32 (121)
Q Consensus 15 ~G~Vkwfn~~kGfGFI~~ 32 (121)
.|.|....-.+|||||..
T Consensus 47 ~G~v~~v~i~~g~afV~f 64 (97)
T 2xnq_A 47 YGHIMQINIKNAFGFIQF 64 (97)
T ss_dssp GSCEEEEEECSSEEEEEE
T ss_pred cCCEEEEEEeCCEEEEEE
Confidence 466666655699999998
No 87
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=28.44 E-value=15 Score=24.99 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=16.5
Q ss_pred CCCEEEEEEEECCCCCceEEEE
Q psy12844 61 YSLLVIFDIGVTPGGRREAVHI 82 (121)
Q Consensus 61 ~G~~V~F~i~~~~kGk~~A~~V 82 (121)
.|-.|+|.+...+++ +.|.+|
T Consensus 50 ~g~aVTFrV~~N~~n-~taadV 70 (99)
T 4hti_A 50 LGPAVTFKVSANVQN-VTTEDV 70 (99)
T ss_dssp ETTEEEEEECCCTTC-CCHHHH
T ss_pred cCceEEEEeccCCCC-CCHHHH
Confidence 367899999999887 666554
No 88
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=28.26 E-value=29 Score=22.12 Aligned_cols=36 Identities=8% Similarity=0.131 Sum_probs=21.2
Q ss_pred ceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc
Q psy12844 9 IEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49 (121)
Q Consensus 9 ~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~ 49 (121)
+.-....|+|.|+|+. |=-+.. ++ +..+.+...++.
T Consensus 31 ~tGd~l~G~i~WQD~~--cl~L~~--~~-~~~~LI~R~AI~ 66 (72)
T 3hfn_A 31 VTGDAITGRVLWQDPT--CVCIAD--EN-SRQTTIWKQAIA 66 (72)
T ss_dssp TTSCEEEEEEEEECSS--EEEEEC------CEEEEEGGGEE
T ss_pred cCCCEEEEEEEEECCC--EEEEEc--CC-CCeEEEEeeeeE
Confidence 3444689999999752 222222 33 346888887775
No 89
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.15 E-value=31 Score=23.31 Aligned_cols=9 Identities=22% Similarity=0.387 Sum_probs=8.0
Q ss_pred CCCeEEEEe
Q psy12844 24 ERGFGFINR 32 (121)
Q Consensus 24 ~kGfGFI~~ 32 (121)
.+|||||.-
T Consensus 66 ~kG~AFVeF 74 (119)
T 2ad9_A 66 GKNQAFIEM 74 (119)
T ss_dssp GGTEEEEEC
T ss_pred CCCEEEEEE
Confidence 389999998
No 90
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=27.73 E-value=1.3e+02 Score=19.55 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=31.2
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGT 52 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g 52 (121)
.+-|+|+.-+..++.=||.- +|+. +-+++..+|+..+
T Consensus 42 fYLGTI~kV~~~~e~ClV~F--~D~S-~~W~~~kdi~~~~ 78 (79)
T 2m0o_A 42 LYLGTIKKVDSAREVCLVQF--EDDS-QFLVLWKDISPAA 78 (79)
T ss_dssp CCEEEEEEEETTTTEEEEEE--TTSC-EEEEETTTBCCCC
T ss_pred EEeEEEEEeccCCCEEEEEE--cCCC-eEEEEeecccccc
Confidence 35799999999999999999 7764 7899999987543
No 91
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=27.34 E-value=43 Score=21.91 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=13.5
Q ss_pred eeEEEEe--eCCCCeEEEEe
Q psy12844 15 SGVIQFF--NKERGFGFINR 32 (121)
Q Consensus 15 ~G~Vkwf--n~~kGfGFI~~ 32 (121)
.|.|+.+ ...+|||||..
T Consensus 31 ~G~V~~~~l~~~kGfaFVey 50 (89)
T 2wbr_A 31 HGPLVSFHPYLNQGIALCKY 50 (89)
T ss_dssp HSCEEEEEEETTTTEEEEEE
T ss_pred hCCEEEEEEcCCCcEEEEEE
Confidence 5666655 34699999998
No 92
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=27.16 E-value=32 Score=21.95 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=21.8
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~ 49 (121)
....|+|+|||. |=.+.. ++ ...++...++.
T Consensus 32 ~~l~G~I~~fD~---f~vlL~--~~--~~~LIYKhAIs 62 (74)
T 2ylb_A 32 IKLQGQIESFDQ---FVILLK--NT--VSQMVYKHAIS 62 (74)
T ss_dssp CEEEEEEEEECS---SEEEEE--SS--SEEEEEGGGEE
T ss_pred CEEEEEEEEECC---cEEEEE--CC--ceEEEEeeeEE
Confidence 367999999974 556555 43 56777777775
No 93
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.15 E-value=37 Score=20.88 Aligned_cols=17 Identities=24% Similarity=0.554 Sum_probs=13.9
Q ss_pred eEEEEeeCCCCeEEEEe
Q psy12844 16 GVIQFFNKERGFGFINR 32 (121)
Q Consensus 16 G~Vkwfn~~kGfGFI~~ 32 (121)
|.|......+|||||+.
T Consensus 42 g~v~~~~~~~g~afV~f 58 (99)
T 2cpd_A 42 GAVERVKKIRDYAFVHF 58 (99)
T ss_dssp TCEEEEEECSSEEEEEE
T ss_pred cceEEEEEeCCeEEEEe
Confidence 66666667799999998
No 94
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.71 E-value=1.2e+02 Score=19.08 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=32.4
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTD 53 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~ 53 (121)
.+-|+|+.-|..++.=||.- .|+ .+.+++..+|...+.
T Consensus 25 fYlGtV~kV~~~~~~ClV~F--eD~-s~~wv~~kdi~~~~~ 62 (68)
T 2e5p_A 25 LYLGTIKKVDSAREVCLVQF--EDD-SQFLVLWKDISPAAL 62 (68)
T ss_dssp EEEEEEEEEETTTTEEEEEE--TTT-EEEEEETTTEECCCS
T ss_pred EEEeEEEEEecCCcEEEEEE--ccC-Ceeeeeeeccccccc
Confidence 46799999999999999999 776 488999999986653
No 95
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=26.70 E-value=69 Score=24.45 Aligned_cols=51 Identities=18% Similarity=0.120 Sum_probs=31.7
Q ss_pred eeeEEEEeeCCCCeEEEEecC-CCCcccEEEEcccc--ccCCCCcccCCCCCCEEEEE
Q psy12844 14 VSGVIQFFNKERGFGFINRIG-DDGRKDYFFHFSEI--QGGTDNILRAIKYSLLVIFD 68 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~-d~g~~dVFfH~s~l--~~~g~~~~~~l~~G~~V~F~ 68 (121)
..|+|..-....+||....+. .+|-.-+|.|.+.+ ...| +.++.||.|-+.
T Consensus 146 ~~G~V~~~g~~~~~G~~V~I~H~~G~~t~Y~HL~~~~~V~~G----~~V~~Gq~IG~v 199 (252)
T 3nyy_A 146 TDGVVTEKGWLEKGGWRIGITAPTGAYFYYAHLDSYAELEKG----DPVKAGDLLGYM 199 (252)
T ss_dssp SCEEEEEEEEETTTEEEEEEECTTSCEEEEEEESEECSCCTT----CEECTTCEEEEC
T ss_pred cCEEEEEEEecCCCCCEEEEEeCCcEEEEEeeCCCCCcCCCC----CEECCCCEEEEE
Confidence 579998876667888544321 23335589999987 3344 356666665543
No 96
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.48 E-value=48 Score=21.42 Aligned_cols=10 Identities=20% Similarity=0.311 Sum_probs=8.9
Q ss_pred CCCCeEEEEe
Q psy12844 23 KERGFGFINR 32 (121)
Q Consensus 23 ~~kGfGFI~~ 32 (121)
..+|||||+-
T Consensus 52 ~~rGfaFVeF 61 (100)
T 2d9o_A 52 KKPGTAVVEF 61 (100)
T ss_dssp SSSSEEEEEE
T ss_pred CCCCEEEEEE
Confidence 5689999998
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.60 E-value=41 Score=21.70 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=8.6
Q ss_pred CCCCeEEEEe
Q psy12844 23 KERGFGFINR 32 (121)
Q Consensus 23 ~~kGfGFI~~ 32 (121)
..+|||||..
T Consensus 49 ~~kg~aFVef 58 (104)
T 1wex_A 49 PFKRQALVEF 58 (104)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 3589999998
No 98
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=25.40 E-value=57 Score=21.53 Aligned_cols=38 Identities=18% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCCceEEEEEEcCCccccc----ccccccccCCCcccccccc
Q psy12844 74 GGRREAVHIKIFDTRLYLE----DLRTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 74 kGk~~A~~V~~~~~~~~~~----~~~~~~~~~~~~~s~~~~~ 111 (121)
+|+..|..=.=.....+++ .+....+.||++++.=+..
T Consensus 41 ~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~ 82 (121)
T 3gce_A 41 GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVR 82 (121)
T ss_dssp TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETT
T ss_pred CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCC
Confidence 4545554433333333443 3455678999999887654
No 99
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=25.32 E-value=26 Score=25.40 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=13.6
Q ss_pred cccccccCCCcccccccc
Q psy12844 94 LRTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 94 ~~~~~~~~~~~~s~~~~~ 111 (121)
.....+.||+|++.=+..
T Consensus 114 ~~~~~i~CP~Hg~~Fd~~ 131 (175)
T 4aay_B 114 ADNKTFNCPGHFSVFDPE 131 (175)
T ss_dssp TTTTEEECTTTCCEEEGG
T ss_pred CCCCEEEcCCCCCEECCC
Confidence 345678999999887665
No 100
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.26 E-value=32 Score=23.12 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=8.5
Q ss_pred CCCCeEEEEe
Q psy12844 23 KERGFGFINR 32 (121)
Q Consensus 23 ~~kGfGFI~~ 32 (121)
..+|||||+.
T Consensus 61 ~~rgfaFV~f 70 (114)
T 2cq2_A 61 PNKPYSFARY 70 (114)
T ss_dssp TTCSCEEEEE
T ss_pred CCCCEEEEEE
Confidence 3589999998
No 101
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=24.77 E-value=1.3e+02 Score=18.70 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=14.1
Q ss_pred eeeEEEEeeCCCCeEEEEe
Q psy12844 14 VSGVIQFFNKERGFGFINR 32 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~ 32 (121)
+-|.|..|+.+.|.--|..
T Consensus 8 fvG~V~~~~~~~g~~~ie~ 26 (89)
T 4he6_A 8 FAGLVLGYDPETGIATVQQ 26 (89)
T ss_dssp CSEEEEEEETTTTEEEEEE
T ss_pred EEEEEEEEeCCCCEEEEEE
Confidence 4588888887777766665
No 102
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=24.55 E-value=2.6e+02 Score=22.13 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=43.8
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECCCCCceEEEEEEcCCccc
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLY 90 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~kGk~~A~~V~~~~~~~~ 90 (121)
++..+|..+. ..|.|.... + | .-||+- .--+||+|...+....+....|.-+.++.+++.
T Consensus 16 ~~~~~i~~l~-~~G~Gv~~~--~-g-~~vfV~-------------~alpGe~v~~~i~~~~~~~~~~~~~~i~~~S~~ 75 (433)
T 1uwv_A 16 IITVSVNDLD-SFGQGVARH--N-G-KTLFIP-------------GLLPQENAEVTVTEDKKQYARAKVVRRLSDSPE 75 (433)
T ss_dssp CEEEEEEEEC-TTSEEEEEE--T-T-EEEEEE-------------TCCTTCEEEEEEEEECSSEEEEEEEEECCCCTT
T ss_pred EEEEEEEEec-CCCceEEEe--C-C-EEEEcC-------------CCCCCCEEEEEEEeecCCceeEEeccccCCCCC
Confidence 3567888886 689999887 4 3 457741 235899999999997777577887888765443
No 103
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=23.96 E-value=1.3e+02 Score=18.24 Aligned_cols=52 Identities=12% Similarity=-0.042 Sum_probs=32.9
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEE
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGV 71 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~ 71 (121)
++.|+|.+--. .|+=.+.. ++| ..+-.|++.--.... -.+.+||.|.+++..
T Consensus 7 ~~~G~Vi~~lg-~~~y~V~~--~~g-~~~~~~i~Gk~Rk~~---i~i~vGD~V~ve~~~ 58 (71)
T 1ah9_A 7 EMQGTVLETLP-NTMFRVEL--ENG-HVVTAHISGKMRKNY---IRILTGDKVTVELTP 58 (71)
T ss_dssp ECCEEEEEECS-SSEEEEEE--TTS-CEEEEEECSSGGGTT---CCCCTTCEECCEECS
T ss_pred EEEEEEEEEeC-CcEEEEEE--CCC-CEEEEEEcceEeccC---ccCCCCCEEEEEEec
Confidence 35799997633 23333444 454 466688876644322 467899999999764
No 104
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=23.91 E-value=39 Score=21.68 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=22.9
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~ 49 (121)
....|+|+|||. |-.+.. .+| ...++...+|.
T Consensus 30 ~~l~G~I~~fD~---f~VlL~--~~g-~~qLIYKhAIS 61 (77)
T 1kq1_A 30 FQMKGVIEEYDK---YVVSLN--SQG-KQHLIYKHAIS 61 (77)
T ss_dssp CEEEEEEEEECS---SEEEEE--ETT-EEEEEEGGGEE
T ss_pred CEEEEEEEEECC---cEEEEE--ECC-eeEEEEeeeEE
Confidence 367999999964 777766 555 46677777775
No 105
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1
Probab=23.71 E-value=52 Score=23.14 Aligned_cols=55 Identities=15% Similarity=0.214 Sum_probs=36.4
Q ss_pred eeeEEEEeeC-----CCCeEEEEecCC----CCcccEEEEccccccCCCCcccCCCCCCEEEEEEEEC
Q psy12844 14 VSGVIQFFNK-----ERGFGFINRIGD----DGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVT 72 (121)
Q Consensus 14 ~~G~Vkwfn~-----~kGfGFI~~~~d----~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~ 72 (121)
..|++-..++ ..-||....--. +++..+|||.+.+.... +.|+.+-+|+|.+...
T Consensus 31 ~~g~LaTi~~~~~~dG~P~~s~v~~~~~~~~d~~g~~~f~~s~~~~~~----~nl~~nprvSl~v~~~ 94 (184)
T 1xhn_A 31 DWGALATISTLEAVRGRPFADVLSLSDGPPGAGSGVPYFYLSPLQLSV----SNLQENPYATLTMTLA 94 (184)
T ss_dssp SEEEEEEECCCGGGTTCEEEEEEECBSCSTTCCCSCCEEEECTTSHHH----HHHHHCCEEEEEEEGG
T ss_pred CEEEEEecccCCCCCCcceEEEEEEEeccCcCCCCCEEEEEeCccHhH----HHHhhCCCEEEEEecC
Confidence 4566666653 223555444211 33347999999987554 6899999999999853
No 106
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=23.56 E-value=47 Score=21.34 Aligned_cols=16 Identities=13% Similarity=0.113 Sum_probs=11.6
Q ss_pred cccccCCCcccccccc
Q psy12844 96 TCSVDCPCRDSKLNVK 111 (121)
Q Consensus 96 ~~~~~~~~~~s~~~~~ 111 (121)
...+.||+|++.=+..
T Consensus 58 ~~~i~Cp~Hg~~Fd~~ 73 (111)
T 1vm9_A 58 GGVITCRAHLWTFNDG 73 (111)
T ss_dssp TTEEECTTTCCEEETT
T ss_pred CCEEEcCCCCCEEeCC
Confidence 4568899988876554
No 107
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.21 E-value=37 Score=21.72 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=9.0
Q ss_pred eCCCCeEEEEe
Q psy12844 22 NKERGFGFINR 32 (121)
Q Consensus 22 n~~kGfGFI~~ 32 (121)
...+|||||+-
T Consensus 49 g~~rG~aFV~F 59 (103)
T 1s79_A 49 KAFKGSIFVVF 59 (103)
T ss_dssp TSCCCEEEEEE
T ss_pred CCCccEEEEEE
Confidence 34689999998
No 108
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=23.15 E-value=72 Score=25.24 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=27.6
Q ss_pred eeeEEEEeeCCC-CeEEEEecC-CCC-cccEEEEccccc-cCCCCcccCCCCCCEEE
Q psy12844 14 VSGVIQFFNKER-GFGFINRIG-DDG-RKDYFFHFSEIQ-GGTDNILRAIKYSLLVI 66 (121)
Q Consensus 14 ~~G~Vkwfn~~k-GfGFI~~~~-d~g-~~dVFfH~s~l~-~~g~~~~~~l~~G~~V~ 66 (121)
..|+|..-.... |||-...+. .++ -.-+|.|.+.+. ..| +.++.||.|-
T Consensus 202 adG~Vv~ag~~~~g~Gn~ViI~H~~g~~~T~YaHLs~i~Vk~G----q~V~~GqvIG 254 (291)
T 1qwy_A 202 TDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAG----DKVKAGDQIA 254 (291)
T ss_dssp SSEEEEEEEEETTTTEEEEEEEETTSSEEEEEEEESEECCCTT----CEECTTCEEE
T ss_pred cCeEEEEEEEecCCCCeEEEEEECCCCEEEEEEcCCccccCCc----CEECCCCEEE
Confidence 478888765444 788422210 222 245789988763 233 3566666555
No 109
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=22.80 E-value=57 Score=20.77 Aligned_cols=8 Identities=38% Similarity=0.924 Sum_probs=7.6
Q ss_pred CCeEEEEe
Q psy12844 25 RGFGFINR 32 (121)
Q Consensus 25 kGfGFI~~ 32 (121)
+|||||+-
T Consensus 65 kg~afV~f 72 (108)
T 2jvo_A 65 NGFAFVEF 72 (108)
T ss_dssp TTEEEEEC
T ss_pred CCEEEEEE
Confidence 99999998
No 110
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=22.59 E-value=78 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=14.1
Q ss_pred cccccccCCCcccccccccc
Q psy12844 94 LRTCSVDCPCRDSKLNVKTS 113 (121)
Q Consensus 94 ~~~~~~~~~~~~s~~~~~~~ 113 (121)
.....+.||||+|.=+..+.
T Consensus 99 ~~~~~i~CP~Hgs~Fd~~tG 118 (165)
T 1nyk_A 99 ADEEAALCPCHGGVYDLRHG 118 (165)
T ss_dssp GGGTEEECTTTCCEEEGGGT
T ss_pred CCCCEEECCCCCCEEcCCCC
Confidence 34456889999998776543
No 111
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=22.09 E-value=85 Score=20.14 Aligned_cols=17 Identities=24% Similarity=0.376 Sum_probs=12.6
Q ss_pred ccccccCCCcccccccc
Q psy12844 95 RTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 95 ~~~~~~~~~~~s~~~~~ 111 (121)
....+.||+|++.=+..
T Consensus 60 ~~~~i~CP~Hg~~Fd~~ 76 (112)
T 1fqt_A 60 EGDVVECSLHMGKFCVR 76 (112)
T ss_dssp ETTEEECTTTCCEEETT
T ss_pred cCCEEECCCCCCEEeCC
Confidence 44578899999876664
No 112
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=21.90 E-value=36 Score=24.71 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.4
Q ss_pred ccccCCCccccccc
Q psy12844 97 CSVDCPCRDSKLNV 110 (121)
Q Consensus 97 ~~~~~~~~~s~~~~ 110 (121)
..+.||||+|+=+.
T Consensus 145 ~~~~CP~Hg~~Fd~ 158 (187)
T 2qjy_C 145 GGWFCPCHGSHYDS 158 (187)
T ss_dssp TEEEETTTTEEECT
T ss_pred CEEEeCCCCCEECC
Confidence 46899999998665
No 113
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.79 E-value=1.5e+02 Score=18.39 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=31.7
Q ss_pred eeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCC
Q psy12844 13 YVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGT 52 (121)
Q Consensus 13 m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g 52 (121)
.+-|+|+.-+..++.=||.- .|+. +.+++..+|+...
T Consensus 23 fYlgtV~kV~~~~~~ClV~F--eD~s-~~wv~~kdi~~~~ 59 (63)
T 2e5q_A 23 YYLGKIKRVSSSKQSCLVTF--EDNS-KYWVLWKDIQHAG 59 (63)
T ss_dssp EEEEEECCCCSTTSEEEEEE--TTSC-EEEEEGGGEECCS
T ss_pred EEEEEEEEEecCCCEEEEEE--ccCc-eeEEEeecccccC
Confidence 35799999999999999999 7764 8999999998665
No 114
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.75 E-value=75 Score=24.78 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=38.3
Q ss_pred ccccceeeeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEE
Q psy12844 5 LGKIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIF 67 (121)
Q Consensus 5 ~~~~~~~~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F 67 (121)
+-++-+++...|+|....+ .+..-+.. ++...++.++..... ..|++|++|-.
T Consensus 91 lerL~sPPL~iGtvlev~d-d~~aiV~s----~Gr~~~V~Vsp~Vd~-----e~LkPG~rVaL 143 (251)
T 3m9b_A 91 VDRLGQPPSGYGVLLATHD-DDTVDVFT----SGRKMRLTCSPNIDA-----ASLKKGQTVRL 143 (251)
T ss_dssp HHHHHSCCEEEEEEEEECS-SSCEEEEC----SSSCCEECBCTTSCT-----TTSCSSCEEEE
T ss_pred HHHhcCCCceEEEEEEEcC-CCEEEEEe----CCceEEEEeCCCCCH-----HHCCCCCEEEe
Confidence 4456678888999999763 56666665 346888988876543 36899999964
No 115
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=21.44 E-value=1e+02 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.696 Sum_probs=13.2
Q ss_pred ccccccCCCcccccccc
Q psy12844 95 RTCSVDCPCRDSKLNVK 111 (121)
Q Consensus 95 ~~~~~~~~~~~s~~~~~ 111 (121)
....+.||+|++.=+..
T Consensus 72 ~~~~i~CP~Hg~~Fd~~ 88 (133)
T 1g8k_B 72 SSKTFSCPCHFTEFDAE 88 (133)
T ss_dssp TTTEEECTTTCCEEEGG
T ss_pred CCCEEECCCCCCEECCC
Confidence 34578999999987764
No 116
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=21.41 E-value=47 Score=21.49 Aligned_cols=31 Identities=13% Similarity=0.278 Sum_probs=20.1
Q ss_pred eeeeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccc
Q psy12844 12 VYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49 (121)
Q Consensus 12 ~m~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~ 49 (121)
....|.|+|||. |-.+.. ++ ...++...+|.
T Consensus 31 ~~L~G~I~~fD~---f~VlL~--~g--~~qLIYKhAIS 61 (79)
T 3sb2_A 31 IKLQGHVESFDQ---YVVLLR--NT--VTQMVYKHAIS 61 (79)
T ss_dssp CEEEEEEEEECS---SEEEEE--SS--SEEEEEGGGEE
T ss_pred CEEEEEEEEECC---cEEEEE--CC--ceEEEEeeeEE
Confidence 367999999974 665555 33 34566665654
No 117
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=21.26 E-value=1.1e+02 Score=20.45 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.3
Q ss_pred ccccCCCccccccc
Q psy12844 97 CSVDCPCRDSKLNV 110 (121)
Q Consensus 97 ~~~~~~~~~s~~~~ 110 (121)
..+.||+|++.=+.
T Consensus 87 ~~i~CP~Hg~~fd~ 100 (129)
T 1rie_A 87 GGYYCPCHGSHYDA 100 (129)
T ss_dssp EEEEETTTTEEEET
T ss_pred CEEEcCCCCCEEcC
Confidence 56889999987665
No 118
>3cnr_A Type IV fimbriae assembly protein; PILZ, xanthomonas citri, type IV pilus assembly, unknown function; HET: MSE; 1.90A {Xanthomonas axonopodis PV} PDB: 3dsg_A
Probab=21.23 E-value=81 Score=21.35 Aligned_cols=13 Identities=15% Similarity=0.202 Sum_probs=10.1
Q ss_pred eeeeEEEEeeCCC
Q psy12844 13 YVSGVIQFFNKER 25 (121)
Q Consensus 13 m~~G~Vkwfn~~k 25 (121)
...|+|.|.++..
T Consensus 62 ~~~GkVvWi~p~~ 74 (117)
T 3cnr_A 62 PVAGKVIWTTPAG 74 (117)
T ss_dssp EEEEEEEEEECC-
T ss_pred EEEEEEEEecCCC
Confidence 4689999998764
No 119
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=20.55 E-value=88 Score=18.31 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=7.8
Q ss_pred CCCeEEEEe
Q psy12844 24 ERGFGFINR 32 (121)
Q Consensus 24 ~kGfGFI~~ 32 (121)
.+|||||.-
T Consensus 46 ~~g~afV~f 54 (81)
T 2krb_A 46 TKGYIFLEY 54 (81)
T ss_dssp CCCEEEEEE
T ss_pred EeEEEEEEE
Confidence 379999998
No 120
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=20.32 E-value=1.8e+02 Score=18.51 Aligned_cols=53 Identities=15% Similarity=0.031 Sum_probs=37.2
Q ss_pred eeeEEEEeeCCCCeEEEEecCCCCcccEEEEccccccCCCCcccCCCCCCEEEEEEEECC
Q psy12844 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73 (121)
Q Consensus 14 ~~G~Vkwfn~~kGfGFI~~~~d~g~~dVFfH~s~l~~~g~~~~~~l~~G~~V~F~i~~~~ 73 (121)
+.|+|..--+ .|+=.+.. ++| ..+-.|++---.... -.+.+||.|.+++..-+
T Consensus 16 ~~G~Vik~l~-n~~f~V~l--~nG-~~~~c~i~GK~Rk~~---I~Il~GD~V~ve~~~yd 68 (79)
T 3i4o_A 16 VEGRVVEPLP-NAMFRIEL--ENG-HKVLAHISGKMRQHY---IRILPEDRVVVELSPYD 68 (79)
T ss_dssp EEEEEEEEET-TTEEEEEE--TTS-CEEEEEECHHHHHTT---CCCCTTCEEEEEEETTE
T ss_pred EEEEEEEEcC-CCEEEEEe--CCC-CEEEEEeCcceecCC---ccCCCCCEEEEEECccC
Confidence 5799998654 45545556 554 478899987644422 47999999999987643
No 121
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.23 E-value=79 Score=19.29 Aligned_cols=10 Identities=40% Similarity=0.650 Sum_probs=8.9
Q ss_pred CCCCeEEEEe
Q psy12844 23 KERGFGFINR 32 (121)
Q Consensus 23 ~~kGfGFI~~ 32 (121)
..+|||||.-
T Consensus 61 ~~~g~afV~f 70 (101)
T 2la4_A 61 PEKGCCFIKY 70 (101)
T ss_dssp TTTTEEEEEC
T ss_pred cCCCEEEEEE
Confidence 5799999998
No 122
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.09 E-value=51 Score=19.80 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=12.3
Q ss_pred eeEEEEeeCCCCeEEEEe
Q psy12844 15 SGVIQFFNKERGFGFINR 32 (121)
Q Consensus 15 ~G~Vkwfn~~kGfGFI~~ 32 (121)
.|.|+...-.+|||||+-
T Consensus 32 ~G~i~~v~~~~g~afV~f 49 (90)
T 2dnq_A 32 YGKVLECDIIKNYGFVHI 49 (90)
T ss_dssp SSCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEECCEEEEEE
Confidence 344544444489999998
Done!