Your job contains 1 sequence.
>psy12844
MKAHLGKIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIK
YSLLVIFDIGVTPGGRREAVHIKIFDTRLYLEDLRTCSVDCPCRDSKLNVKTSRTYRKMV
C
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy12844
(121 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P63848 - symbol:cspA "Probable cold shock prote... 112 1.0e-06 1
UNIPROTKB|P0A986 - symbol:cspI species:83333 "Escherichia... 106 4.3e-06 1
UNIPROTKB|P0A9X9 - symbol:cspA species:83333 "Escherichia... 104 7.0e-06 1
TIGR_CMR|CPS_0718 - symbol:CPS_0718 "cold-shock DNA-bindi... 104 7.0e-06 1
UNIPROTKB|P0A978 - symbol:cspG species:83333 "Escherichia... 102 1.1e-05 1
UNIPROTKB|P36995 - symbol:cspB species:83333 "Escherichia... 102 1.1e-05 1
UNIPROTKB|P0A9Y6 - symbol:cspC species:83333 "Escherichia... 99 2.4e-05 1
TIGR_CMR|BA_1629 - symbol:BA_1629 "cold shock protein Csp... 98 3.0e-05 1
FB|FBgn0022959 - symbol:yps "ypsilon schachtel" species:7... 104 4.6e-05 1
UNIPROTKB|P0A972 - symbol:cspE species:83333 "Escherichia... 95 6.3e-05 1
UNIPROTKB|P0A968 - symbol:cspD species:83333 "Escherichia... 93 0.00010 1
TIGR_CMR|CPS_2895 - symbol:CPS_2895 "cold shock-like prot... 92 0.00013 1
TIGR_CMR|BA_5115 - symbol:BA_5115 "cold shock protein Csp... 91 0.00017 1
TIGR_CMR|BA_5424 - symbol:BA_5424 "cold shock protein Csp... 91 0.00017 1
TIGR_CMR|SPO_3625 - symbol:SPO_3625 "cold shock protein C... 91 0.00017 1
TIGR_CMR|BA_3594 - symbol:BA_3594 "cold shock protein Csp... 90 0.00021 1
UNIPROTKB|Q9KL16 - symbol:cspV "Cold shock protein CspV" ... 89 0.00027 1
UNIPROTKB|Q9KSW4 - symbol:cspD "Cold shock-like protein C... 89 0.00027 1
TIGR_CMR|BA_1135 - symbol:BA_1135 "cold shock protein Csp... 89 0.00027 1
TIGR_CMR|GSU_0207 - symbol:GSU_0207 "cold-shock domain fa... 89 0.00027 1
TIGR_CMR|VC_1142 - symbol:VC_1142 "cold shock-like protei... 89 0.00027 1
TIGR_CMR|VC_A0933 - symbol:VC_A0933 "cold shock domain fa... 89 0.00027 1
WB|WBGene00000472 - symbol:cey-1 species:6239 "Caenorhabd... 92 0.00033 1
UNIPROTKB|Q9KMY2 - symbol:VC_A0184 "Cold shock DNA-bindin... 88 0.00035 1
TIGR_CMR|GSU_0581 - symbol:GSU_0581 "cold-shock domain fa... 88 0.00035 1
TIGR_CMR|VC_A0184 - symbol:VC_A0184 "cold shock DNA-bindi... 88 0.00035 1
TIGR_CMR|CPS_0737 - symbol:CPS_0737 "cold-shock DNA-bindi... 87 0.00045 1
TIGR_CMR|GSU_0191 - symbol:GSU_0191 "cold-shock domain fa... 86 0.00057 1
TIGR_CMR|GSU_1905 - symbol:GSU_1905 "cold shock domain fa... 85 0.00072 1
TIGR_CMR|SPO_0437 - symbol:SPO_0437 "cold shock family pr... 85 0.00072 1
UNIPROTKB|Q9KN00 - symbol:cspA "Cold shock-like protein C... 84 0.00093 1
TIGR_CMR|BA_2422 - symbol:BA_2422 "cold shock protein Csp... 84 0.00093 1
TIGR_CMR|SO_1648 - symbol:SO_1648 "cold shock domain fami... 84 0.00093 1
TIGR_CMR|SO_2628 - symbol:SO_2628 "stress response protei... 84 0.00093 1
TIGR_CMR|VC_A0166 - symbol:VC_A0166 "cold shock transcrip... 84 0.00093 1
>UNIPROTKB|P63848 [details] [associations]
symbol:cspA "Probable cold shock protein A" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0040007 GO:GO:0005618 GO:GO:0006355
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003677 EMBL:BX842583 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 PIR:A70564
RefSeq:NP_218165.1 RefSeq:NP_338297.1 RefSeq:YP_006517135.1
ProteinModelPortal:P63848 SMR:P63848 PRIDE:P63848
EnsemblBacteria:EBMYCT00000001507 EnsemblBacteria:EBMYCT00000071867
GeneID:13317256 GeneID:885837 GeneID:922742 KEGG:mtc:MT3750.1
KEGG:mtu:Rv3648c KEGG:mtv:RVBD_3648c PATRIC:18130006
TubercuList:Rv3648c OMA:AWEDEEV ProtClustDB:CLSK792621
Uniprot:P63848
Length = 67
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 26/60 (43%), Positives = 38/60 (63%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG 75
G +++FN E+GFGFI +DG D F H++EIQG T R ++ + V F+IG +P G
Sbjct: 4 GTVKWFNAEKGFGFI--APEDGSADVFVHYTEIQG-TG--FRTLEENQKVEFEIGHSPKG 58
>UNIPROTKB|P0A986 [details] [associations]
symbol:cspI species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0009409 GO:GO:0006351 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 OMA:IQSNNFK
PIR:C64910 RefSeq:NP_416070.1 RefSeq:YP_489816.1
ProteinModelPortal:P0A986 SMR:P0A986 DIP:DIP-48195N IntAct:P0A986
MINT:MINT-1309031 PRIDE:P0A986 EnsemblBacteria:EBESCT00000000769
EnsemblBacteria:EBESCT00000016713 GeneID:12931246 GeneID:946099
KEGG:ecj:Y75_p1528 KEGG:eco:b1552 PATRIC:32118406 EchoBASE:EB3636
EcoGene:EG13877 ProtClustDB:CLSK891754 BioCyc:EcoCyc:G6825-MONOMER
BioCyc:ECOL316407:JW1544-MONOMER Genevestigator:P0A986
Uniprot:P0A986
Length = 70
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/69 (40%), Positives = 39/69 (56%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
++G++++FN E+GFGFI DG KD F HFS IQ N + + + V F I P
Sbjct: 5 MTGLVKWFNPEKGFGFITP--KDGSKDVFVHFSAIQS---NDFKTLTENQEVEFGIENGP 59
Query: 74 GGRREAVHI 82
G AVH+
Sbjct: 60 KGPA-AVHV 67
>UNIPROTKB|P0A9X9 [details] [associations]
symbol:cspA species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IEP] [GO:0006950 "response
to stress" evidence=IEP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEP;IDA;TAS] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00039 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0009409
GO:GO:0003727 GO:GO:0006351 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 EMBL:M30139
EMBL:U60035 PIR:JH0201 RefSeq:NP_418012.1 RefSeq:YP_491880.1
PDB:1MJC PDB:2BH8 PDB:3MEF PDBsum:1MJC PDBsum:2BH8 PDBsum:3MEF
ProteinModelPortal:P0A9X9 SMR:P0A9X9 DIP:DIP-31862N IntAct:P0A9X9
MINT:MINT-1220153 PaxDb:P0A9X9 PRIDE:P0A9X9
EnsemblBacteria:EBESCT00000002447 EnsemblBacteria:EBESCT00000002448
EnsemblBacteria:EBESCT00000016761 GeneID:12933539 GeneID:948070
KEGG:ecj:Y75_p3621 KEGG:eco:b3556 PATRIC:32122584 EchoBASE:EB0164
EcoGene:EG10166 OMA:AHFRQIT ProtClustDB:PRK10354
BioCyc:EcoCyc:PD03695 BioCyc:ECOL316407:JW3525-MONOMER
EvolutionaryTrace:P0A9X9 Genevestigator:P0A9X9 GO:GO:0001072
GO:GO:0060567 Uniprot:P0A9X9
Length = 70
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
++G++++FN ++GFGFI DDG KD F HFS IQ
Sbjct: 5 MTGIVKWFNADKGFGFITP--DDGSKDVFVHFSAIQ 38
>TIGR_CMR|CPS_0718 [details] [associations]
symbol:CPS_0718 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267468.1
ProteinModelPortal:Q488P6 SMR:Q488P6 GeneID:3518546
KEGG:cps:CPS_0718 PATRIC:21464753 OMA:QKGPCAN
ProtClustDB:CLSK768090 BioCyc:CPSY167879:GI48-805-MONOMER
Uniprot:Q488P6
Length = 68
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGG 51
G++++FN ++GFGFI +DG KD F H SEIQ G
Sbjct: 4 GIVKWFNSDKGFGFITP--EDGSKDLFVHHSEIQSG 37
>UNIPROTKB|P0A978 [details] [associations]
symbol:cspG species:83333 "Escherichia coli K-12"
[GO:0009409 "response to cold" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:AWEDEEV EMBL:D63344 EMBL:AF003591 PIR:D64840 RefSeq:NP_415510.1
RefSeq:YP_489262.1 ProteinModelPortal:P0A978 SMR:P0A978
DIP:DIP-47938N IntAct:P0A978 MINT:MINT-1247768 PRIDE:P0A978
EnsemblBacteria:EBESCT00000003528 EnsemblBacteria:EBESCT00000016965
GeneID:12931923 GeneID:945591 KEGG:ecj:Y75_p0962 KEGG:eco:b0990
PATRIC:32117205 EchoBASE:EB3993 EcoGene:EG14243
ProtClustDB:PRK09890 BioCyc:EcoCyc:G6511-MONOMER
BioCyc:ECOL316407:JW0974-MONOMER Genevestigator:P0A978
Uniprot:P0A978
Length = 70
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
++G++++FN ++GFGFI DDG KD F HF+ IQ N R + + V F I
Sbjct: 5 MTGLVKWFNADKGFGFITP--DDGSKDVFVHFTAIQS---NEFRTLNENQKVEFSI 55
>UNIPROTKB|P36995 [details] [associations]
symbol:cspB species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA;IEP] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0009409 GO:GO:0006351 GO:GO:0003723
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
EMBL:L28429 EMBL:AF003590 PIR:S43617 RefSeq:NP_416075.1
RefSeq:YP_489821.1 ProteinModelPortal:P36995 SMR:P36995
DIP:DIP-9334N IntAct:P36995 MINT:MINT-1241665 PaxDb:P36995
EnsemblBacteria:EBESCT00000000475 EnsemblBacteria:EBESCT00000016617
GeneID:12930135 GeneID:946091 KEGG:ecj:Y75_p1533 KEGG:eco:b1557
PATRIC:32118416 EchoBASE:EB2119 EcoGene:EG12203 OMA:ANVFRRN
ProtClustDB:CLSK891756 BioCyc:EcoCyc:EG12203-MONOMER
BioCyc:ECOL316407:JW1549-MONOMER Genevestigator:P36995
Uniprot:P36995
Length = 71
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
++G++++FN ++GFGFI+ + DG KD F HFS IQ DN R + V F I
Sbjct: 5 MTGLVKWFNADKGFGFISPV--DGSKDVFVHFSAIQN--DNY-RTLFEGQKVTFSI 55
>UNIPROTKB|P0A9Y6 [details] [associations]
symbol:cspC species:83333 "Escherichia coli K-12"
[GO:0001072 "RNA binding transcription antitermination factor
activity" evidence=IDA] [GO:0060567 "negative regulation of
DNA-dependent transcription, termination" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0006351 GO:GO:0003723 GO:GO:0003697 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 EMBL:L28430 EMBL:D28496 PIR:S43618 RefSeq:NP_416337.1
RefSeq:YP_490084.1 ProteinModelPortal:P0A9Y6 SMR:P0A9Y6
DIP:DIP-36183N IntAct:P0A9Y6 MINT:MINT-1218847 SWISS-2DPAGE:P0A9Y6
PaxDb:P0A9Y6 PRIDE:P0A9Y6 EnsemblBacteria:EBESCT00000000185
EnsemblBacteria:EBESCT00000017479 GeneID:12934542 GeneID:946339
KEGG:ecj:Y75_p1798 KEGG:eco:b1823 PATRIC:32118965 EchoBASE:EB2120
EcoGene:EG12204 OMA:LEEGQHV ProtClustDB:PRK10943
BioCyc:EcoCyc:EG12204-MONOMER BioCyc:ECOL316407:JW1812-MONOMER
Genevestigator:P0A9Y6 Uniprot:P0A9Y6
Length = 69
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
+ G +++FN+ +GFGFI DG KD F HFS IQG
Sbjct: 4 IKGQVKWFNESKGFGFITPA--DGSKDVFVHFSAIQG 38
>TIGR_CMR|BA_1629 [details] [associations]
symbol:BA_1629 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704 OMA:ANVFRRN
HSSP:P41016 RefSeq:NP_844076.1 RefSeq:YP_018263.1
RefSeq:YP_027779.1 ProteinModelPortal:Q81SL9 SMR:Q81SL9
DNASU:1086132 EnsemblBacteria:EBBACT00000009010
EnsemblBacteria:EBBACT00000014540 EnsemblBacteria:EBBACT00000022883
GeneID:1086132 GeneID:2816052 GeneID:2848926 KEGG:ban:BA_1629
KEGG:bar:GBAA_1629 KEGG:bat:BAS1512 ProtClustDB:CLSK916304
BioCyc:BANT260799:GJAJ-1584-MONOMER
BioCyc:BANT261594:GJ7F-1650-MONOMER Uniprot:Q81SL9
Length = 65
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 27/63 (42%), Positives = 35/63 (55%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
+ G +++FN E+GFGFI G D D F HFS IQG +A++ V FDI T
Sbjct: 1 MQGKVKWFNNEKGFGFIEMEGAD---DVFVHFSAIQGEG---YKALEEGQEVSFDI--TE 52
Query: 74 GGR 76
G R
Sbjct: 53 GNR 55
>FB|FBgn0022959 [details] [associations]
symbol:yps "ypsilon schachtel" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0048477 "oogenesis" evidence=NAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 GO:GO:0003729 GO:GO:0048477 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR019844 HSSP:O54310 EMBL:U49120
ProteinModelPortal:O46173 SMR:O46173 IntAct:O46173 STRING:O46173
PaxDb:O46173 PRIDE:O46173 FlyBase:FBgn0022959 eggNOG:NOG317970
InParanoid:O46173 OrthoDB:EOG4MPG6H ChiTaRS:yps ArrayExpress:O46173
Bgee:O46173 Uniprot:O46173
Length = 359
Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
V+G +++FN + G+GFINR +D R+D F H S I +R++ +V FD+ +
Sbjct: 63 VTGTVKWFNVKSGYGFINR--NDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGE 120
Query: 74 GGRREAVHI 82
G EA ++
Sbjct: 121 KGN-EAANV 128
>UNIPROTKB|P0A972 [details] [associations]
symbol:cspE species:83333 "Escherichia coli K-12"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0001072 "RNA
binding transcription antitermination factor activity"
evidence=IDA] [GO:0060567 "negative regulation of DNA-dependent
transcription, termination" evidence=IDA] [GO:0031564
"transcription antitermination" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0006351
GO:GO:0003697 EMBL:U82598 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 EMBL:D28497 EMBL:S83396
eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704 GO:GO:0001072
GO:GO:0060567 OMA:WTKRTTI EMBL:L29054 PIR:S49050 RefSeq:NP_415156.1
RefSeq:YP_488914.1 ProteinModelPortal:P0A972 SMR:P0A972
DIP:DIP-47834N IntAct:P0A972 MINT:MINT-1221433 PaxDb:P0A972
PRIDE:P0A972 EnsemblBacteria:EBESCT00000004662
EnsemblBacteria:EBESCT00000018389 GeneID:12931648 GeneID:947024
KEGG:ecj:Y75_p0613 KEGG:eco:b0623 PATRIC:32116426 EchoBASE:EB2096
EcoGene:EG12179 ProtClustDB:PRK09507 BioCyc:EcoCyc:EG12179-MONOMER
BioCyc:ECOL316407:JW0618-MONOMER Genevestigator:P0A972
GO:GO:0008143 Uniprot:P0A972
Length = 69
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQ 49
+ G +++FN+ +GFGFI +DG KD F HFS IQ
Sbjct: 4 IKGNVKWFNESKGFGFITP--EDGSKDVFVHFSAIQ 37
>UNIPROTKB|P0A968 [details] [associations]
symbol:cspD species:83333 "Escherichia coli K-12"
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0042594
"response to starvation" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008156 "negative
regulation of DNA replication" evidence=IEA;IDA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
InterPro:IPR012751 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042594 GO:GO:0003723 GO:GO:0003697
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0008156
InterPro:IPR019844 EMBL:M31045 eggNOG:COG1278 HOGENOM:HOG000070674
KO:K03704 PIR:H64826 RefSeq:NP_415401.1 RefSeq:YP_489153.1
ProteinModelPortal:P0A968 SMR:P0A968 DIP:DIP-47833N IntAct:P0A968
MINT:MINT-1219798 PaxDb:P0A968 PRIDE:P0A968
EnsemblBacteria:EBESCT00000001356 EnsemblBacteria:EBESCT00000017372
GeneID:12934143 GeneID:945669 KEGG:ecj:Y75_p0853 KEGG:eco:b0880
PATRIC:32116969 EchoBASE:EB1102 EcoGene:EG11111 OMA:QVVRFDV
ProtClustDB:PRK09937 BioCyc:EcoCyc:EG11111-MONOMER
BioCyc:ECOL316407:JW0864-MONOMER Genevestigator:P0A968
TIGRFAMs:TIGR02381 Uniprot:P0A968
Length = 74
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG 75
G +++FN +GFGFI G G +D F H+S IQ D R +K V FD+ P G
Sbjct: 4 GTVKWFNNAKGFGFICPEG--GGEDIFAHYSTIQ--MDGY-RTLKAGQSVQFDVHQGPKG 58
Query: 76 RREAVHIKI 84
+V + +
Sbjct: 59 NHASVIVPV 67
>TIGR_CMR|CPS_2895 [details] [associations]
symbol:CPS_2895 "cold shock-like protein CspD"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006950 GO:GO:0006355
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
OMA:QVVRFDV TIGRFAMs:TIGR02381 RefSeq:YP_269596.1
ProteinModelPortal:Q480C3 SMR:Q480C3 STRING:Q480C3 GeneID:3518797
KEGG:cps:CPS_2895 PATRIC:21468815
BioCyc:CPSY167879:GI48-2945-MONOMER Uniprot:Q480C3
Length = 72
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG 75
G +++FN +GFGFI D G +D F H+S I+ D R +K V +++ P G
Sbjct: 4 GTVKWFNNAKGFGFIRP--DSGGEDIFAHYSTIE--MDGY-RTLKAGQDVDYELNDGPKG 58
Query: 76 RREAVHIKIFDTRL 89
A IK+ D L
Sbjct: 59 HH-AASIKLADGEL 71
>TIGR_CMR|BA_5115 [details] [associations]
symbol:BA_5115 "cold shock protein CspD" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 RefSeq:NP_847301.1
RefSeq:YP_021768.1 RefSeq:YP_030998.1 ProteinModelPortal:Q81K90
SMR:Q81K90 DNASU:1084426 EnsemblBacteria:EBBACT00000008459
EnsemblBacteria:EBBACT00000015452 EnsemblBacteria:EBBACT00000020851
GeneID:1084426 GeneID:2816754 GeneID:2848947 KEGG:ban:BA_5115
KEGG:bar:GBAA_5115 KEGG:bat:BAS4754 HOGENOM:HOG000070673
OMA:IQSNNFK ProtClustDB:CLSK917532
BioCyc:BANT260799:GJAJ-4808-MONOMER
BioCyc:BANT261594:GJ7F-4967-MONOMER Uniprot:Q81K90
Length = 66
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
+G +++FN E+GFGFI G D D F HFS IQG
Sbjct: 3 TGKVKWFNSEKGFGFIEVEGGD---DVFVHFSAIQG 35
>TIGR_CMR|BA_5424 [details] [associations]
symbol:BA_5424 "cold shock protein CspC" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_847592.1 RefSeq:YP_022086.2 RefSeq:YP_031279.1
ProteinModelPortal:P62169 SMR:P62169 DNASU:1085020
EnsemblBacteria:EBBACT00000012131 EnsemblBacteria:EBBACT00000018032
EnsemblBacteria:EBBACT00000022166 GeneID:1085020 GeneID:2818619
GeneID:2851935 KEGG:ban:BA_5424 KEGG:bar:GBAA_5424 KEGG:bat:BAS5040
OMA:WTKRTTI ProtClustDB:CLSK873658
BioCyc:BANT260799:GJAJ-5115-MONOMER
BioCyc:BANT261594:GJ7F-5291-MONOMER Uniprot:P62169
Length = 65
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
+ G +++FN E+GFGFI R +DG D F HFS IQ D ++++ V FDI
Sbjct: 1 MQGRVKWFNAEKGFGFIER--EDG-DDVFVHFSAIQ--QDGY-KSLEEGQQVEFDIVDGA 54
Query: 74 GGRREAVHIKI 84
G + A +K+
Sbjct: 55 RGPQAANVVKL 65
>TIGR_CMR|SPO_3625 [details] [associations]
symbol:SPO_3625 "cold shock protein CspA" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HOGENOM:HOG000070673 RefSeq:YP_168819.1 ProteinModelPortal:Q5LMD9
SMR:Q5LMD9 GeneID:3195668 KEGG:sil:SPO3625 PATRIC:23380729
OMA:TMDGFKT Uniprot:Q5LMD9
Length = 68
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+G +++FN ++GFGFI + G KD F H S ++ ++ + V FDI
Sbjct: 3 NGTVKWFNSQKGFGFI--APEQGSKDVFVHISALERSG---IQKLDDGQAVTFDIESGRD 57
Query: 75 GRREAVHIKI 84
GR A+++ +
Sbjct: 58 GRESAINLAL 67
>TIGR_CMR|BA_3594 [details] [associations]
symbol:BA_3594 "cold shock protein CspB" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 OMA:AHFRQIT HOGENOM:HOG000070673
HSSP:P41016 RefSeq:NP_845864.1 RefSeq:YP_020229.1
RefSeq:YP_029590.1 ProteinModelPortal:Q81YF5 SMR:Q81YF5
DNASU:1086356 EnsemblBacteria:EBBACT00000010475
EnsemblBacteria:EBBACT00000015696 EnsemblBacteria:EBBACT00000021214
GeneID:1086356 GeneID:2816334 GeneID:2852892 KEGG:ban:BA_3594
KEGG:bar:GBAA_3594 KEGG:bat:BAS3333 ProtClustDB:CLSK917095
BioCyc:BANT260799:GJAJ-3395-MONOMER
BioCyc:BANT261594:GJ7F-3504-MONOMER Uniprot:Q81YF5
Length = 66
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
+G +++FN E+GFGFI +G +D F HFS IQG
Sbjct: 3 NGKVKWFNSEKGFGFIEV---EGGEDVFVHFSAIQG 35
>UNIPROTKB|Q9KL16 [details] [associations]
symbol:cspV "Cold shock protein CspV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG-GTDNILRAIKYSLLV 65
++G +++FN+ +GFGF+ + D+G D F HF+ IQ G + + S +V
Sbjct: 5 MTGSVKWFNETKGFGFLTQ--DNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIV 55
>UNIPROTKB|Q9KSW4 [details] [associations]
symbol:cspD "Cold shock-like protein CspD" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 InterPro:IPR012751
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+G +++FN +GFGFI G+DG D F H+S IQ D R +K V + + P
Sbjct: 6 TGTVKWFNNAKGFGFICPEGEDG--DIFAHYSTIQ--MDGY-RTLKAGQQVSYQVEQGPK 60
Query: 75 G 75
G
Sbjct: 61 G 61
>TIGR_CMR|BA_1135 [details] [associations]
symbol:BA_1135 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 RefSeq:NP_843619.1
RefSeq:YP_017753.1 RefSeq:YP_027326.1 ProteinModelPortal:Q81TW8
SMR:Q81TW8 DNASU:1086206 EnsemblBacteria:EBBACT00000011078
EnsemblBacteria:EBBACT00000018522 EnsemblBacteria:EBBACT00000023981
GeneID:1086206 GeneID:2816671 GeneID:2852366 KEGG:ban:BA_1135
KEGG:bar:GBAA_1135 KEGG:bat:BAS1054 HOGENOM:HOG000070674 KO:K03704
OMA:LNIKGHY ProtClustDB:CLSK916107
BioCyc:BANT260799:GJAJ-1130-MONOMER
BioCyc:BANT261594:GJ7F-1181-MONOMER Uniprot:Q81TW8
Length = 67
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
V+G +++FN E+GFGFI G++ D F HFS I+ TD ++++ V F+I
Sbjct: 3 VTGQVKWFNNEKGFGFIEVPGEN---DVFVHFSAIE--TDGF-KSLEEGQKVSFEI 52
>TIGR_CMR|GSU_0207 [details] [associations]
symbol:GSU_0207 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951268.1 ProteinModelPortal:Q74GN9 SMR:Q74GN9
GeneID:2687733 KEGG:gsu:GSU0207 PATRIC:22023162 OMA:MSTITGN
BioCyc:GSUL243231:GH27-162-MONOMER Uniprot:Q74GN9
Length = 66
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
V+G +++FN +GFGF+ + ++G +D F HFS I G N +++ V F++ P
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ--ENG-EDVFVHFSAING---NGFKSLAEGDRVTFEVTKGP 55
Query: 74 GGRREA 79
G + A
Sbjct: 56 KGLQAA 61
>TIGR_CMR|VC_1142 [details] [associations]
symbol:VC_1142 "cold shock-like protein CspD" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0009409 "response
to cold" evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0009409 GO:GO:0006351
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 OMA:QVVRFDV
TIGRFAMs:TIGR02381 PIR:C82236 RefSeq:NP_230787.1
ProteinModelPortal:Q9KSW4 SMR:Q9KSW4 DNASU:2614575 GeneID:2614575
KEGG:vch:VC1142 PATRIC:20081376 ProtClustDB:CLSK793973
Uniprot:Q9KSW4
Length = 76
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+G +++FN +GFGFI G+DG D F H+S IQ D R +K V + + P
Sbjct: 6 TGTVKWFNNAKGFGFICPEGEDG--DIFAHYSTIQ--MDGY-RTLKAGQQVSYQVEQGPK 60
Query: 75 G 75
G
Sbjct: 61 G 61
>TIGR_CMR|VC_A0933 [details] [associations]
symbol:VC_A0933 "cold shock domain family protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 GO:GO:0005737
GO:GO:0006355 GO:GO:0003677 GO:GO:0009409 GO:GO:0006351
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 eggNOG:COG1278 KO:K03704
OMA:LNIKGHY EMBL:AF409091 PIR:E82399 RefSeq:NP_233318.1
ProteinModelPortal:Q9KL16 SMR:Q9KL16 DNASU:2612854 GeneID:2612854
KEGG:vch:VCA0933 PATRIC:20086396 ProtClustDB:CLSK2748081
Uniprot:Q9KL16
Length = 70
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG-GTDNILRAIKYSLLV 65
++G +++FN+ +GFGF+ + D+G D F HF+ IQ G + + S +V
Sbjct: 5 MTGSVKWFNETKGFGFLTQ--DNGGNDVFVHFNSIQSEGFKTLAEGQRVSFIV 55
>WB|WBGene00000472 [details] [associations]
symbol:cey-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IDA] InterPro:IPR002059 InterPro:IPR011129 Pfam:PF00313
PRINTS:PR00050 SMART:SM00357 Prosite:PS00352 GO:GO:0006355
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 OMA:CFKCGEP EMBL:Z81525
GeneTree:ENSGT00390000009256 HSSP:P41016 PIR:T21689
RefSeq:NP_496366.1 ProteinModelPortal:O62213 SMR:O62213
DIP:DIP-26200N IntAct:O62213 MINT:MINT-1068354 STRING:O62213
PaxDb:O62213 EnsemblMetazoa:F33A8.3.1 EnsemblMetazoa:F33A8.3.2
GeneID:174690 KEGG:cel:CELE_F33A8.3 CTD:174690 WormBase:F33A8.3
HOGENOM:HOG000016800 InParanoid:O62213 NextBio:885082
Uniprot:O62213
Length = 208
Score = 92 (37.4 bits), Expect = 0.00033, P = 0.00033
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 7 KIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDN-ILRAIKYSLLV 65
K ++ V G +++FN + G+GFINR D +D F H + I N LR++ + V
Sbjct: 14 KPVKATKVKGTVKWFNVKNGYGFINRT--DTNEDIFVHQTAIINNNPNKYLRSLGDNEEV 71
Query: 66 IFDI 69
+FDI
Sbjct: 72 MFDI 75
>UNIPROTKB|Q9KMY2 [details] [associations]
symbol:VC_A0184 "Cold shock DNA-binding domain protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0009409 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HSSP:P41016 PIR:A82489
RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2 SMR:Q9KMY2
DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184 PATRIC:20084941
OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
V+G +++FN+ +GFGFI + ++G D F HFS IQG
Sbjct: 5 VTGTVKWFNETKGFGFIKQ--ENG-PDVFAHFSAIQG 38
>TIGR_CMR|GSU_0581 [details] [associations]
symbol:GSU_0581 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR002059 InterPro:IPR011129 InterPro:IPR012156
Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357
Prosite:PS00352 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE017180 GenomeReviews:AE017180_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844
HOGENOM:HOG000070674 KO:K03704 RefSeq:NP_951639.1
ProteinModelPortal:Q74FM5 SMR:Q74FM5 GeneID:2685798
KEGG:gsu:GSU0581 PATRIC:22023911 OMA:RAITSAF ProtClustDB:CLSK827926
BioCyc:GSUL243231:GH27-557-MONOMER Uniprot:Q74FM5
Length = 66
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDI 69
GV+++FN +G+GFI + ++G +D F HFS IQG D ++ V FD+
Sbjct: 4 GVVKWFNDSKGYGFIEQ--ENG-EDVFVHFSSIQG--DGFKTLVE-GQAVTFDV 51
>TIGR_CMR|VC_A0184 [details] [associations]
symbol:VC_A0184 "cold shock DNA-binding domain protein"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
EMBL:AE003853 GenomeReviews:AE003853_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 KO:K03704
HSSP:P41016 PIR:A82489 RefSeq:NP_232584.1 ProteinModelPortal:Q9KMY2
SMR:Q9KMY2 DNASU:2611851 GeneID:2611851 KEGG:vch:VCA0184
PATRIC:20084941 OMA:SFEATQD ProtClustDB:CLSK2392342 Uniprot:Q9KMY2
Length = 69
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
V+G +++FN+ +GFGFI + ++G D F HFS IQG
Sbjct: 5 VTGTVKWFNETKGFGFIKQ--ENG-PDVFAHFSAIQG 38
>TIGR_CMR|CPS_0737 [details] [associations]
symbol:CPS_0737 "cold-shock DNA-binding domain family
protein" species:167879 "Colwellia psychrerythraea 34H" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 EMBL:CP000083
GenomeReviews:CP000083_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR019844 eggNOG:COG1278
HOGENOM:HOG000070674 KO:K03704 RefSeq:YP_267487.1
ProteinModelPortal:Q488M7 SMR:Q488M7 GeneID:3518930
KEGG:cps:CPS_0737 PATRIC:21464787 OMA:PQAENVE
ProtClustDB:CLSK742412 BioCyc:CPSY167879:GI48-824-MONOMER
Uniprot:Q488M7
Length = 69
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
V+G ++FFN+ +GFGFI + ++G D F HFS I G
Sbjct: 5 VTGKVKFFNETKGFGFIEQ--ENG-PDVFVHFSAISG 38
>TIGR_CMR|GSU_0191 [details] [associations]
symbol:GSU_0191 "cold-shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_951252.1 ProteinModelPortal:Q74GQ5 SMR:Q74GQ5
GeneID:2687816 KEGG:gsu:GSU0191 PATRIC:22023128 OMA:SVTFDVQ
ProtClustDB:CLSK827691 BioCyc:GSUL243231:GH27-130-MONOMER
Uniprot:Q74GQ5
Length = 66
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 23/66 (34%), Positives = 38/66 (57%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTP 73
V+G +++FN +GFGF+ + ++G +D F HFS I G D +++ V F+I P
Sbjct: 2 VNGTVKWFNDSKGFGFLEQ--ENG-EDVFCHFSAISG--DGF-KSLTEGDRVTFEITKGP 55
Query: 74 GGRREA 79
G + A
Sbjct: 56 KGLQAA 61
>TIGR_CMR|GSU_1905 [details] [associations]
symbol:GSU_1905 "cold shock domain family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 EMBL:AE017180 GenomeReviews:AE017180_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_952954.1 ProteinModelPortal:Q74BX3 SMR:Q74BX3
GeneID:2688446 KEGG:gsu:GSU1905 PATRIC:22026675 OMA:FISRDNG
ProtClustDB:CLSK828634 BioCyc:GSUL243231:GH27-1948-MONOMER
Uniprot:Q74BX3
Length = 66
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 16 GVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGG 75
G +++FN +GFGFI + D+G +D F HFS IQ D +++ V FD+ P G
Sbjct: 4 GRVKWFNDAKGFGFIEQ--DNG-EDVFVHFSAIQ--QDGF-KSLAEGEQVSFDVVNGPKG 57
Query: 76 RREAVHIK 83
+A ++K
Sbjct: 58 L-QAANVK 64
>TIGR_CMR|SPO_0437 [details] [associations]
symbol:SPO_0437 "cold shock family protein" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003677 "DNA binding" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 KO:K03704 HOGENOM:HOG000070673
RefSeq:YP_165700.1 ProteinModelPortal:Q5LWA5 SMR:Q5LWA5
GeneID:3192720 KEGG:sil:SPO0437 PATRIC:23374139 OMA:VEFAIHR
ProtClustDB:CLSK747481 Uniprot:Q5LWA5
Length = 68
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
+G +++FN +GFGFI ++G KD F H S ++ L + + V +++
Sbjct: 3 TGTVKWFNTTKGFGFI--APEEGGKDVFVHISAVERSG---LTGLADNQKVSYELKPGRD 57
Query: 75 GRREAVHIKI 84
GR AV +K+
Sbjct: 58 GRESAVDLKL 67
>UNIPROTKB|Q9KN00 [details] [associations]
symbol:cspA "Cold shock-like protein CspA" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEI 48
++G +++FN+ +GFGFI++ D+G +D F HF I
Sbjct: 5 MTGSVKWFNETKGFGFISQ--DNGGQDVFVHFKSI 37
>TIGR_CMR|BA_2422 [details] [associations]
symbol:BA_2422 "cold shock protein CspA" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 Prosite:PS00352 GO:GO:0005737 GO:GO:0006355
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 HOGENOM:HOG000070674 KO:K03704
RefSeq:NP_844799.1 RefSeq:YP_019064.1 RefSeq:YP_028518.1
ProteinModelPortal:Q81QK2 SMR:Q81QK2 DNASU:1086343
EnsemblBacteria:EBBACT00000011610 EnsemblBacteria:EBBACT00000017774
EnsemblBacteria:EBBACT00000021660 GeneID:1086343 GeneID:2816216
GeneID:2851992 KEGG:ban:BA_2422 KEGG:bar:GBAA_2422 KEGG:bat:BAS2257
OMA:ASESVHI ProtClustDB:CLSK916624
BioCyc:BANT260799:GJAJ-2323-MONOMER
BioCyc:BANT261594:GJ7F-2403-MONOMER Uniprot:Q81QK2
Length = 67
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQG 50
++G +++FN E+GFGFI +G D F HFS I G
Sbjct: 3 LTGKVKWFNSEKGFGFIEV---EGGNDVFVHFSAITG 36
>TIGR_CMR|SO_1648 [details] [associations]
symbol:SO_1648 "cold shock domain family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009409 "response to cold"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 Pfam:PF00313 PIRSF:PIRSF002599 PRINTS:PR00050
SMART:SM00357 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 HOGENOM:HOG000070674 HSSP:P41016
RefSeq:NP_717259.2 ProteinModelPortal:Q8EGF6 GeneID:1169442
PATRIC:23522932 OMA:FEVENGQ ProtClustDB:CLSK912356 Uniprot:Q8EGF6
Length = 69
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEI 48
+GV+++FN+++GFGFI+ D+G D F HF I
Sbjct: 5 TGVVKWFNEDKGFGFISP--DNGGADAFVHFRAI 36
>TIGR_CMR|SO_2628 [details] [associations]
symbol:SO_2628 "stress response protein CspD"
species:211586 "Shewanella oneidensis MR-1" [GO:0003697
"single-stranded DNA binding" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] InterPro:IPR002059 InterPro:IPR011129
InterPro:IPR012156 InterPro:IPR012751 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006950 GO:GO:0006355 GO:GO:0003677
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR019844 HSSP:O54310
HOGENOM:HOG000070674 KO:K03704 TIGRFAMs:TIGR02381
RefSeq:NP_718213.1 ProteinModelPortal:Q8EDW3 SMR:Q8EDW3
GeneID:1170330 KEGG:son:SO_2628 PATRIC:23524883 OMA:DGCENDI
ProtClustDB:CLSK906807 Uniprot:Q8EDW3
Length = 68
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 22/61 (36%), Positives = 33/61 (54%)
Query: 15 SGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPG 74
SG +++FN +GFGFI D G +D F H+S I+ + R +K V F++ P
Sbjct: 3 SGTVKWFNNAKGFGFI--CPDQGGEDVFAHYSTIE--MEGY-RTLKAGQPVQFEVEQGPK 57
Query: 75 G 75
G
Sbjct: 58 G 58
>TIGR_CMR|VC_A0166 [details] [associations]
symbol:VC_A0166 "cold shock transcriptional regulator
CspA" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] InterPro:IPR002059
InterPro:IPR011129 InterPro:IPR012156 Pfam:PF00313
PIRSF:PIRSF002599 PRINTS:PR00050 SMART:SM00357 Prosite:PS00352
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0009409
GO:GO:0006351 EMBL:AE003853 GenomeReviews:AE003853_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR019844 eggNOG:COG1278 KO:K03704 PIR:G82492
RefSeq:NP_232566.1 ProteinModelPortal:Q9KN00 SMR:Q9KN00
PRIDE:Q9KN00 DNASU:2611900 GeneID:2611900 KEGG:vch:VCA0166
PATRIC:20084905 OMA:KMRGKVS ProtClustDB:CLSK788675 Uniprot:Q9KN00
Length = 70
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 14 VSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEI 48
++G +++FN+ +GFGFI++ D+G +D F HF I
Sbjct: 5 MTGSVKWFNETKGFGFISQ--DNGGQDVFVHFKSI 37
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.328 0.146 0.445 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 121 121 0.00091 102 3 11 22 0.43 30
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 35
No. of states in DFA: 537 (57 KB)
Total size of DFA: 118 KB (2078 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.73u 0.06s 11.79t Elapsed: 00:00:04
Total cpu time: 11.73u 0.06s 11.79t Elapsed: 00:00:04
Start: Thu Aug 15 12:56:01 2013 End: Thu Aug 15 12:56:05 2013