Diaphorina citri psyllid: psy12844


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
MKAHLGKIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLYLEDLRTCSVDCPCRDSKLNVKTSRTYRKMVC
cccccccccEEEEccEEEEEECccccCEEEECccccccccEEEEcccECccccccccccccccEEEEEECccccccccEEEEEEEccHHHHHHccccccccccccccccCECccEEEcccc
****LGKIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLYLEDLRTCSVDCPCRDSKLNVKTSRTYRKMVC
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKAHLGKIIEEVYVSGVIQFFNKERGFGFINRIGDDGRKDYFFHFSEIQGGTDNILRAIKYSLLVIFDIGVTPGGRREAVHIKIFDTRLYLEDLRTCSVDCPCRDSKLNVKTSRTYRKMVC

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Major cold shock protein confidentQ46664
Cold shock protein CspA Binds to and stimulates the transcription of the CCAAT-containing, cold-shock-inducible promoters of the H-NS and GyrA proteins. Binds also to the inverted repeat 5'-ATTGG-3'.confidentP0A9Y4

Prediction of Gene Ontology Terms ?

GO Term ?Description ?Confidence Level ?Parent GO Terms ?
GO:0001072 [MF]RNA binding transcription antitermination factor activityprobableGO:0003674, GO:0001070, GO:0001071
GO:0016020 [CC]membraneprobableGO:0005575
GO:0003697 [MF]single-stranded DNA bindingprobableGO:0043566, GO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:0003677, GO:1901363
GO:0031564 [BP]transcription antiterminationprobableGO:0080090, GO:0019222, GO:0031326, GO:0031323, GO:0051128, GO:0043244, GO:0031554, GO:0050789, GO:2000112, GO:0031555, GO:0060255, GO:0065007, GO:0010468, GO:0019219, GO:0009889, GO:0050794, GO:0008150, GO:0051171, GO:2001141, GO:0051252, GO:0006355, GO:0010556
GO:0060567 [BP]negative regulation of DNA-dependent transcription, terminationprobableGO:0009892, GO:0080090, GO:0009890, GO:0031327, GO:0031326, GO:0031324, GO:0031323, GO:0051129, GO:0051128, GO:0010629, GO:0043244, GO:0031554, GO:0050789, GO:0044699, GO:0043242, GO:0010605, GO:0019222, GO:2000112, GO:2000113, GO:0008150, GO:0019219, GO:0065007, GO:0048519, GO:0010468, GO:0045934, GO:0060255, GO:0009987, GO:0009889, GO:0050794, GO:0044763, GO:0051171, GO:0051172, GO:2001141, GO:0051253, GO:0051252, GO:0006355, GO:0010556, GO:0045892, GO:0010558, GO:0048523
GO:0009409 [BP]response to coldprobableGO:0009628, GO:0006950, GO:0008150, GO:0050896, GO:0009266
GO:0044464 [CC]cell partprobableGO:0005575, GO:0005623
GO:0003727 [MF]single-stranded RNA bindingprobableGO:0097159, GO:0003674, GO:0005488, GO:0003676, GO:1901363, GO:0003723

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2BH8, chain A
Confidence level:very confident
Coverage over the Query: 13-75
View the alignment between query and template
View the model in PyMOL
Template: 3L0O, chain A
Confidence level:probable
Coverage over the Query: 13-100
View the alignment between query and template
View the model in PyMOL