BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12847
(188 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SFE|A Chain A, Ada O6-Methylguanine-Dna Methyltransferase From
Escherichia Coli
Length = 180
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 11/141 (7%)
Query: 15 SSCIGTKMLIAYYDKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIK---MFESKQSRDII 71
+ C + L+A ++ I AI+ G + L +L +++ + MF+ + R++I
Sbjct: 20 ADCELGRCLVAESERG--ICAILLGDDDATLISELQQMFPAADNAPADLMFQ-QHVREVI 76
Query: 72 DRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARA 131
L N + L + I GT FQ+ VW L IP G SY +A IG+PK+ RA
Sbjct: 77 ASL-----NQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRA 131
Query: 132 VANACGQNNIPILIPCHRVIR 152
VA+AC N + I+IPCHRV+R
Sbjct: 132 VASACAANKLAIVIPCHRVVR 152
>pdb|1T39|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Covalently
Crosslinked To Dna
pdb|1T39|B Chain B, Human O6-Alkylguanine-Dna Alkyltransferase Covalently
Crosslinked To Dna
Length = 188
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY +A G PK+ARAV A N +PILIPCHRV+
Sbjct: 108 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 167
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 168 GNYSGGLAVKEWLLAHE 184
>pdb|1QNT|A Chain A, X-Ray Structure Of Human O6alkylguanine-Dna
Alkyltransferase
Length = 176
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY +A G PK+ARAV A N +PILIPCHRV+
Sbjct: 96 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172
>pdb|1YFH|A Chain A, Wt Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna
Containing An Alkylated Cytosine
pdb|1YFH|B Chain B, Wt Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna
Containing An Alkylated Cytosine
pdb|1YFH|C Chain C, Wt Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna
Containing An Alkylated Cytosine
Length = 179
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY +A G PK+ARAV A N +PILIPCHRV+
Sbjct: 96 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172
>pdb|1EH6|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase
Length = 207
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 41/77 (53%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY +A G PK+ARAV A N +PILIPCHRV+
Sbjct: 96 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172
>pdb|2G7H|A Chain A, Structure Of An O6-Methylguanine Dna Methyltransferase
From Methanococcus Jannaschii (Mj1529)
Length = 167
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 88 IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPC 147
I +K+E +F K V + I FG +Y D+A+ + S RAV A +N +P++IPC
Sbjct: 71 ISYKLEVPEFTKKVLDIVKDIEFGKTLTYGDIAKKLN--TSPRAVGMALKRNPLPLIIPC 128
Query: 148 HRVI 151
HRV+
Sbjct: 129 HRVV 132
>pdb|1T38|A Chain A, Human O6-Alkylguanine-Dna Alkyltransferase Bound To Dna
Containing O6-Methylguanine
Length = 188
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY +A G PK+ARAV A N +PILIP HRV+
Sbjct: 108 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPSHRVVCSSGAV 167
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 168 GNYSGGLAVKEWLLAHE 184
>pdb|3KZY|A Chain A, Crystal Structure Of Snap-Tag
pdb|3KZY|B Chain B, Crystal Structure Of Snap-Tag
Length = 182
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY+ +A G P + AV A N +PILIPCHRV++
Sbjct: 99 RQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDV 158
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 159 GGYEGGLAVKEWLLAHE 175
>pdb|1EH7|A Chain A, Methylated Human O6-Alkylguanine-Dna Alkyltransferase
pdb|1EH8|A Chain A, Benzylated Human O6-Alkylguanine-Dna Alkyltransferase
Length = 207
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 40/77 (51%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY +A G PK+ARAV A N +PILIP HRV+
Sbjct: 96 RQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPXHRVVCSSGAV 155
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 156 GNYSGGLAVKEWLLAHE 172
>pdb|3GVA|A Chain A, Crystal Structure Analysis Of S. Pombe Atl
pdb|3GVA|B Chain B, Crystal Structure Analysis Of S. Pombe Atl
pdb|3GX4|X Chain X, Crystal Structure Analysis Of S. Pombe Atl In Complex With
Dna
pdb|3GYH|X Chain X, Crystal Structure Analysis Of S. Pombe Atl In Complex With
Damaged Dna Containing Pob
pdb|4ENJ|A Chain A, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing O6-Hydroxyethylguanine
pdb|4ENK|A Chain A, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing O6-Propylguanine
pdb|4ENM|A Chain A, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing O6-Benzylguanine
pdb|4ENN|A Chain A, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing O6-Carboxymethylguanine
pdb|4ENN|B Chain B, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing O6-Carboxymethylguanine
pdb|4HDU|A Chain A, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing 2-Aminopurine
pdb|4HDV|A Chain A, Crystal Structure Of S. Pombe Atl1 In Complex With Damaged
Dna Containing 2,6-Diaminopurine
Length = 116
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
+F V+ +C+IP+G + +Y ++AR +G P AR V A + +P HRVI
Sbjct: 5 EFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVI 60
>pdb|3KZZ|A Chain A, Crystal Structure Of Snap-Tag Bound To Its Substrate
Benzylguanine
Length = 182
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY+ +A G P + AV A N +PILIP HRV++
Sbjct: 99 RQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPAHRVVQGDLDV 158
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 159 GGYEGGLAVKEWLLAHE 175
>pdb|3L00|A Chain A, Crystal Structure Of Benzylated Snap-Tag
Length = 182
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRXXXXX 157
++++W L + FG + SY+ +A G P + AV A N +PILIP HRV++
Sbjct: 99 RQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPXHRVVQGDLDV 158
Query: 158 XXXXXXKYIKETLIKIE 174
+KE L+ E
Sbjct: 159 GGYEGGLAVKEWLLAHE 175
>pdb|1MGT|A Chain A, Crystal Structure Of O6-Methylguanine-Dna
Methyltransferase From Hyperthermophilic Archaeon
Pyrococcus Kodakaraensis Strain Kod1
Length = 174
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 95 TDFQKLVWSELCK-IPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVI 151
T F+K V+ L K + GS+ +Y D+A+ + S RAV A +N PI++PCHRV+
Sbjct: 90 TPFEKKVYEWLTKNVKRGSVITYGDLAKALN--TSPRAVGGAMKRNPYPIVVPCHRVV 145
>pdb|1WRJ|A Chain A, Crystal Structure Of O6-Methylguanine Methyltransferase
From Sulfolobus Tokodaii
Length = 156
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 69 DIIDRLEAYIVNPKQNCLD-IKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPK 127
D +L+ Y K + + + FK +F+ V+ E+ +I +G + +Y VA +
Sbjct: 44 DFFYKLDLYFEGKKVDLTEPVDFK-PFNEFRIRVFKEVMRIKWGEVRTYKQVADAV--KT 100
Query: 128 SARAVANACGQNNIPILIPCHRVI 151
S RAV A +NN+ ++IPCHRVI
Sbjct: 101 SPRAVGTALSKNNVLLIIPCHRVI 124
>pdb|2KIF|A Chain A, Solution Nmr Structure Of An O6-Methylguanine Dna
Methyltran Family Protein From Vibrio Parahaemolyticus.
Northeast Stru Genomics Consortium Target Vpr247.
pdb|2KIM|A Chain A, 1.7-Mm Microcryoprobe Solution Nmr Structure Of An O6-
Methylguanine Dna Methyltransferase Family Protein From
Vibrio Parahaemolyticus. Northeast Structural Genomics
Consortium Target Vpr247
Length = 108
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 101 VWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIP--ILIPCHRVI 151
+++ + +IP G + +Y ++A+ G P AR V A G N+P +P RVI
Sbjct: 8 IFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALG--NLPEGSKLPWFRVI 58
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 28 DKSCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDII 71
DKSC + A +F A+P D KL+S +E I++ ++ D+I
Sbjct: 262 DKSCPVTAFVF-ASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVI 304
>pdb|1TC5|A Chain A, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
pdb|1TC5|B Chain B, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
pdb|1TC5|C Chain C, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
pdb|1TC5|D Chain D, Structural Analysis Of A Probable Eukaryotic D-Amino Acid
Trna Deacylase
Length = 194
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)
Query: 50 TKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIP 109
TK+++H KM QS + ++ IV Q L K K F +LV ++
Sbjct: 68 TKIFTHFSPEKMINQPQSLEECPEMDILIV--PQASLGGKVKGRSVQFHQLVAKDVGAAL 125
Query: 110 FGSLCSYADVARNI--------GRPKSARAVANACG 137
+ C + VAR + G P+S A G
Sbjct: 126 YDRFCHFVRVARGVDESRVDANGAPRSEGDAPKAEG 161
>pdb|3RHG|A Chain A, Crystal Structure Of Amidohydrolase Pmi1525 (Target
Efi-500319) From Proteus Mirabilis Hi4320
Length = 365
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 58 YIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYA 117
YI+ FE K+ D ID + I + ++ I+GTD + + E+ PF +
Sbjct: 126 YIEKFEGKRLADDIDAMAKMIDD------ELNIGIDGTDIRAGMIGEIGVSPF-----FT 174
Query: 118 DVARNIGRPKSARAVANACGQNNIP 142
D +N S RA A A QNN P
Sbjct: 175 DGEKN-----SLRAAALA--QNNNP 192
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 47 VDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNP 81
VD +LY +E +K Q R + DRL+AY+ +P
Sbjct: 257 VDNYELYEKLELVK----GQKRKVKDRLKAYVRDP 287
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 47 VDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNP 81
VD +LY +E +K Q R + DRL+AY+ +P
Sbjct: 257 VDNYELYEKLELVK----GQKRKVKDRLKAYVRDP 287
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 47 VDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNP 81
VD +LY +E +K Q R + DRL+AY+ +P
Sbjct: 257 VDNYELYEKLELVK----GQKRKVKDRLKAYVRDP 287
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 47 VDLTKLYSHIEYIKMFESKQSRDIIDRLEAYIVNP 81
VD +LY +E +K Q R + DRL+AY+ +P
Sbjct: 256 VDNYELYEKLELVK----GQKRKVKDRLKAYVRDP 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,915,195
Number of Sequences: 62578
Number of extensions: 185568
Number of successful extensions: 449
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 22
length of query: 188
length of database: 14,973,337
effective HSP length: 93
effective length of query: 95
effective length of database: 9,153,583
effective search space: 869590385
effective search space used: 869590385
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)