Query psy12847
Match_columns 188
No_of_seqs 192 out of 1358
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:17:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sfe_A ADA O6-methylguanine-DN 100.0 4E-51 1.4E-55 332.7 15.9 159 17-178 10-178 (180)
2 3l00_A SNAP-TAG; protein TAG, 100.0 4.4E-51 1.5E-55 332.7 13.8 160 18-180 6-181 (182)
3 1wrj_A Methylated-DNA--protein 100.0 5.1E-50 1.7E-54 319.7 15.3 148 22-180 2-152 (156)
4 1eh6_A O6-alkylguanine-DNA alk 100.0 1.1E-49 3.7E-54 330.4 12.6 162 21-185 6-183 (207)
5 2g7h_A Methylated-DNA--protein 100.0 7.8E-43 2.7E-47 280.4 14.3 141 35-181 9-161 (167)
6 1mgt_A MGMT, protein (O6-methy 100.0 1.1E-40 3.9E-45 269.7 13.7 152 21-178 1-171 (174)
7 2kif_A O6-methylguanine-DNA me 100.0 1.9E-39 6.5E-44 244.4 9.5 91 95-185 2-92 (108)
8 3gva_A Alkyltransferase-like p 100.0 5.5E-38 1.9E-42 239.0 8.6 89 94-182 3-93 (116)
9 1qbj_A Protein (double-strande 94.3 0.043 1.5E-06 38.3 3.9 43 95-139 9-51 (81)
10 1qgp_A Protein (double strande 91.0 0.27 9.1E-06 33.6 4.2 41 96-138 14-54 (77)
11 1sfu_A 34L protein; protein/Z- 90.2 0.42 1.4E-05 33.1 4.5 43 96-138 12-56 (75)
12 3f2g_A Alkylmercury lyase; MER 78.1 3.8 0.00013 33.6 5.7 53 96-160 22-74 (220)
13 2p7v_B Sigma-70, RNA polymeras 76.8 6.1 0.00021 25.2 5.4 39 95-135 7-45 (68)
14 2l02_A Uncharacterized protein 75.7 3.1 0.00011 29.1 3.8 41 99-142 11-53 (82)
15 1ku3_A Sigma factor SIGA; heli 75.7 5.7 0.0002 25.7 5.1 38 95-134 12-49 (73)
16 2l01_A Uncharacterized protein 68.4 7.3 0.00025 26.9 4.3 40 99-141 13-55 (77)
17 1tty_A Sigma-A, RNA polymerase 65.0 13 0.00043 25.0 5.1 32 95-126 20-51 (87)
18 1oyi_A Double-stranded RNA-bin 64.7 10 0.00034 26.4 4.5 38 95-138 16-53 (82)
19 3cuo_A Uncharacterized HTH-typ 59.0 17 0.00059 24.0 5.0 40 94-136 22-63 (99)
20 3k2z_A LEXA repressor; winged 59.0 7.1 0.00024 30.3 3.3 41 95-137 4-46 (196)
21 1je8_A Nitrate/nitrite respons 56.9 18 0.0006 24.1 4.6 37 94-137 22-58 (82)
22 1fse_A GERE; helix-turn-helix 56.7 23 0.00079 22.2 5.1 37 94-137 12-48 (74)
23 3ulq_B Transcriptional regulat 54.4 18 0.00061 24.7 4.4 38 94-138 30-67 (90)
24 2heo_A Z-DNA binding protein 1 51.3 17 0.00059 23.4 3.7 32 95-128 9-40 (67)
25 1rr7_A Middle operon regulator 50.6 28 0.00094 25.8 5.2 59 69-138 55-115 (129)
26 2o8x_A Probable RNA polymerase 50.1 29 0.00099 21.4 4.6 37 95-137 17-53 (70)
27 3c57_A Two component transcrip 50.0 20 0.0007 24.4 4.1 36 94-136 28-63 (95)
28 4ham_A LMO2241 protein; struct 49.7 31 0.001 25.0 5.3 50 90-139 7-65 (134)
29 1i1g_A Transcriptional regulat 49.7 18 0.00063 25.9 4.1 38 95-137 3-40 (141)
30 1x3u_A Transcriptional regulat 49.3 29 0.00098 22.1 4.6 35 95-136 18-52 (79)
31 1p4w_A RCSB; solution structur 48.8 46 0.0016 23.1 5.9 38 93-137 34-71 (99)
32 3jth_A Transcription activator 47.4 33 0.0011 22.9 4.9 39 94-138 21-59 (98)
33 3t72_q RNA polymerase sigma fa 45.9 33 0.0011 24.1 4.8 32 95-126 21-52 (99)
34 3pqk_A Biofilm growth-associat 45.4 27 0.00092 23.7 4.2 39 94-138 21-59 (102)
35 2cfx_A HTH-type transcriptiona 44.9 30 0.001 25.1 4.6 39 95-138 4-42 (144)
36 3kor_A Possible Trp repressor; 44.6 16 0.00054 27.2 2.9 35 96-135 61-95 (119)
37 2cyy_A Putative HTH-type trans 43.8 27 0.00094 25.5 4.3 29 95-126 6-34 (151)
38 2dbb_A Putative HTH-type trans 43.4 28 0.00095 25.3 4.2 39 95-138 8-46 (151)
39 2lnb_A Z-DNA-binding protein 1 42.8 10 0.00034 26.4 1.5 39 95-137 18-56 (80)
40 2e1c_A Putative HTH-type trans 41.5 30 0.001 26.3 4.2 39 94-137 25-63 (171)
41 2rnj_A Response regulator prot 39.4 24 0.00084 23.6 3.1 37 94-137 30-66 (91)
42 2p5v_A Transcriptional regulat 39.0 39 0.0013 24.9 4.5 38 95-137 9-46 (162)
43 2pn6_A ST1022, 150AA long hypo 38.3 52 0.0018 23.7 5.1 28 96-126 3-30 (150)
44 3hug_A RNA polymerase sigma fa 37.8 27 0.00091 23.4 3.1 37 95-137 39-75 (92)
45 2w25_A Probable transcriptiona 37.8 43 0.0015 24.3 4.5 38 95-137 6-43 (150)
46 3reo_A (ISO)eugenol O-methyltr 37.6 19 0.00065 30.5 2.8 39 99-137 44-85 (368)
47 3mzy_A RNA polymerase sigma-H 36.3 41 0.0014 23.8 4.1 36 95-137 111-146 (164)
48 2gxg_A 146AA long hypothetical 35.8 58 0.002 22.7 4.9 41 95-139 36-78 (146)
49 1y0u_A Arsenical resistance op 34.8 58 0.002 21.7 4.5 29 94-127 29-57 (96)
50 3bpv_A Transcriptional regulat 34.5 65 0.0022 22.2 4.9 42 95-139 28-71 (138)
51 1tc3_C Protein (TC3 transposas 34.3 39 0.0013 18.7 3.1 23 114-138 22-44 (51)
52 2ia0_A Putative HTH-type trans 34.1 51 0.0017 24.9 4.5 40 94-138 15-54 (171)
53 2x4h_A Hypothetical protein SS 33.9 56 0.0019 23.0 4.5 44 95-138 12-58 (139)
54 3i4p_A Transcriptional regulat 33.8 64 0.0022 23.9 5.0 38 96-138 3-40 (162)
55 2cg4_A Regulatory protein ASNC 33.6 54 0.0018 23.8 4.5 38 95-137 7-44 (152)
56 2x48_A CAG38821; archeal virus 33.4 28 0.00096 20.8 2.4 22 114-137 32-53 (55)
57 2kko_A Possible transcriptiona 32.4 55 0.0019 22.6 4.1 37 95-137 24-60 (108)
58 3tqn_A Transcriptional regulat 32.3 92 0.0032 21.7 5.4 32 95-126 8-46 (113)
59 1jko_C HIN recombinase, DNA-in 31.8 55 0.0019 18.5 3.5 36 97-139 10-45 (52)
60 2oqr_A Sensory transduction pr 31.0 55 0.0019 24.6 4.3 42 95-137 158-202 (230)
61 1r1t_A Transcriptional repress 30.9 88 0.003 22.1 5.1 38 94-137 44-81 (122)
62 2cw1_A SN4M; lambda CRO fold, 30.6 60 0.0021 21.0 3.8 23 115-139 15-37 (65)
63 1ub9_A Hypothetical protein PH 30.5 43 0.0015 21.9 3.2 39 94-137 14-52 (100)
64 3g3z_A NMB1585, transcriptiona 30.2 58 0.002 22.8 4.1 42 95-139 30-73 (145)
65 2jpc_A SSRB; DNA binding prote 29.7 35 0.0012 20.6 2.4 22 113-136 13-34 (61)
66 3by6_A Predicted transcription 29.6 1E+02 0.0035 22.0 5.4 32 95-126 10-48 (126)
67 1uly_A Hypothetical protein PH 29.3 84 0.0029 24.3 5.1 38 94-137 18-55 (192)
68 1z7u_A Hypothetical protein EF 29.2 72 0.0025 22.0 4.3 42 90-137 16-58 (112)
69 2yh9_A Small protein A, BAME p 28.6 33 0.0011 23.3 2.3 25 103-129 8-32 (88)
70 1sfx_A Conserved hypothetical 28.5 78 0.0027 20.7 4.3 42 95-139 19-62 (109)
71 3rjp_A COVR; winged helix-turn 28.4 90 0.0031 20.7 4.6 43 95-138 24-69 (96)
72 1uxc_A FRUR (1-57), fructose r 28.3 59 0.002 20.9 3.4 25 114-140 1-25 (65)
73 2htj_A P fimbrial regulatory p 27.9 81 0.0028 20.4 4.2 27 98-127 2-28 (81)
74 3neu_A LIN1836 protein; struct 27.9 1.2E+02 0.0041 21.5 5.5 31 95-125 12-49 (125)
75 1p2f_A Response regulator; DRR 27.6 65 0.0022 24.1 4.1 30 94-124 146-175 (220)
76 3zq7_A KDP operon transcriptio 27.5 99 0.0034 20.7 4.7 42 95-137 30-74 (102)
77 1rp3_A RNA polymerase sigma fa 27.0 81 0.0028 23.8 4.6 25 110-136 200-224 (239)
78 3bro_A Transcriptional regulat 26.4 94 0.0032 21.4 4.6 44 95-139 33-78 (141)
79 2lkp_A Transcriptional regulat 26.2 90 0.0031 21.4 4.4 40 94-137 30-71 (119)
80 1r1u_A CZRA, repressor protein 26.0 92 0.0031 21.1 4.4 38 94-137 24-61 (106)
81 1r7j_A Conserved hypothetical 25.9 67 0.0023 22.0 3.6 38 100-139 9-47 (95)
82 2hqr_A Putative transcriptiona 25.8 34 0.0012 25.8 2.2 29 95-124 145-173 (223)
83 2jt1_A PEFI protein; solution 25.8 66 0.0023 21.5 3.4 39 97-137 5-46 (77)
84 1gxq_A PHOB, phosphate regulon 25.0 1.2E+02 0.0041 20.5 4.8 42 95-137 33-77 (106)
85 4fx0_A Probable transcriptiona 24.7 1.6E+02 0.0056 21.0 5.8 65 67-139 11-80 (148)
86 2jsc_A Transcriptional regulat 24.6 73 0.0025 22.3 3.7 39 94-138 19-57 (118)
87 2pex_A Transcriptional regulat 24.6 1.5E+02 0.005 20.8 5.4 42 95-139 46-89 (153)
88 3tgn_A ADC operon repressor AD 24.4 1.8E+02 0.0061 20.1 8.5 41 95-139 37-79 (146)
89 1xsv_A Hypothetical UPF0122 pr 24.0 61 0.0021 22.9 3.2 37 95-137 27-63 (113)
90 3r0a_A Putative transcriptiona 23.9 1E+02 0.0035 21.7 4.4 44 95-139 25-70 (123)
91 1dw9_A Cyanate lyase; cyanate 23.8 37 0.0013 26.2 2.0 35 101-137 14-48 (156)
92 2gwr_A DNA-binding response re 23.7 90 0.0031 23.7 4.3 29 94-123 154-182 (238)
93 2ns0_A Hypothetical protein; r 23.6 1.5E+02 0.0052 20.5 5.0 44 96-139 7-56 (85)
94 1u2w_A CADC repressor, cadmium 23.4 80 0.0027 22.2 3.7 40 94-138 40-79 (122)
95 2hr3_A Probable transcriptiona 23.3 1.9E+02 0.0064 20.0 5.8 43 95-139 34-78 (147)
96 1fx7_A Iron-dependent represso 23.1 58 0.002 25.6 3.1 45 95-139 5-52 (230)
97 3oop_A LIN2960 protein; protei 22.8 1.5E+02 0.005 20.6 5.1 42 95-139 36-79 (143)
98 2b0l_A GTP-sensing transcripti 22.7 1.1E+02 0.0038 21.2 4.3 21 105-125 34-55 (102)
99 1s7o_A Hypothetical UPF0122 pr 22.4 69 0.0024 22.7 3.2 37 95-137 24-60 (113)
100 2lfw_A PHYR sigma-like domain; 22.3 85 0.0029 22.8 3.8 36 95-136 95-130 (157)
101 2k4j_A Putative transcriptiona 22.1 1.4E+02 0.0048 20.8 4.8 42 95-137 43-87 (115)
102 1or7_A Sigma-24, RNA polymeras 22.1 65 0.0022 23.7 3.1 26 110-137 153-178 (194)
103 2rdp_A Putative transcriptiona 22.0 1.2E+02 0.0041 21.1 4.5 42 95-139 41-84 (150)
104 3df8_A Possible HXLR family tr 22.0 1E+02 0.0035 21.4 4.0 43 91-138 22-66 (111)
105 2cob_A LCOR protein; MLR2, KIA 21.9 38 0.0013 22.8 1.5 41 98-140 16-56 (70)
106 3nrv_A Putative transcriptiona 21.3 2.1E+02 0.0072 19.8 6.6 64 67-139 17-82 (148)
107 2f2e_A PA1607; transcription f 21.0 1.1E+02 0.0036 22.4 4.1 44 89-138 17-60 (146)
108 3gw9_A Sterol 14alpha-demethyl 21.0 79 0.0027 26.2 3.7 61 94-160 285-345 (450)
109 3szt_A QCSR, quorum-sensing co 20.9 1.1E+02 0.0037 24.0 4.4 39 93-138 175-213 (237)
110 3eco_A MEPR; mutlidrug efflux 20.7 1.3E+02 0.0045 20.6 4.4 44 95-139 30-75 (139)
111 2l8n_A Transcriptional repress 20.4 59 0.002 21.0 2.2 26 112-139 8-33 (67)
112 2vn2_A DNAD, chromosome replic 20.0 1.5E+02 0.0051 21.1 4.6 42 95-138 31-74 (128)
No 1
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid binding DNA repair protein, DNA-binding protein; 2.10A {Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Probab=100.00 E-value=4e-51 Score=332.75 Aligned_cols=159 Identities=30% Similarity=0.460 Sum_probs=140.6
Q ss_pred ccceeEEEEEEeccCccceEEEEEecccccc-cc-cccch---hhhhhc-----ccCChhHHHHHHHHHHHhcCCCCCCc
Q psy12847 17 CIGTKMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS---HIEYIK-----MFESKQSRDIIDRLEAYIVNPKQNCL 86 (188)
Q Consensus 17 ~~g~~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~---~~~~~~-----~~~~~~l~~~~~qL~~YF~G~~~~~F 86 (188)
..+..|+|.+++|| +|.+.++++++||+. .| ++... .+...+ ..+++.++++.+||++||+|++.. |
T Consensus 10 g~~~~i~~~~~~sp--lG~l~l~~~~~gl~~l~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~qL~~Yf~G~~~~-f 86 (180)
T 1sfe_A 10 GENLAVRYALADCE--LGRCLVAESERGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTP-L 86 (180)
T ss_dssp ---CCCEEEEEEET--TEEEEEEECSSSEEEEEEESCHHHHHHHHHHHSTTCEECTTCHHHHHHHHHHHHHHHSSSCC-C
T ss_pred CCCceEEEEEEeCC--ccEEEEEEECCEeEEEEeCCchhHHHHHHHHhcccccccCCCHHHHHHHHHHHHHhcCCCCC-C
Confidence 34667899999999 999999999999999 88 43221 121111 224578899999999999999999 9
Q ss_pred ccccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHH
Q psy12847 87 DIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYI 166 (188)
Q Consensus 87 ~lpl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~ 166 (188)
++|+++.||+||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||++||+|+||+||.+.
T Consensus 87 ~lpl~~~gt~Fq~~V~~~l~~IP~G~~~tYg~iA~~~g~p~a~RaVg~A~~~np~~~~iPcHRVv~~~G~l~gy~~g~~~ 166 (180)
T 1sfe_A 87 TLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGSLSGYRWGVSR 166 (180)
T ss_dssp CSCBCCCSCHHHHHHHHHHTTSCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCCBBTTBCGGGEECTTSCCTTCTTCHHH
T ss_pred CCCcccCcChHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCchHHHHHHHHHhCCCCcccCcceEECCCCCcCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccc
Q psy12847 167 KETLIKIEQKIV 178 (188)
Q Consensus 167 k~~LL~~E~~~~ 178 (188)
|++||++||+..
T Consensus 167 k~~LL~~Eg~~~ 178 (180)
T 1sfe_A 167 KAQLLRREAENE 178 (180)
T ss_dssp HHHHHHHHSCC-
T ss_pred HHHHHHHhCCcc
Confidence 999999999854
No 2
>3l00_A SNAP-TAG; protein TAG, protein engineering, benzylguanine, benzylated transferase; HET: BCS; 1.70A {Homo sapiens} PDB: 3kzy_A* 3kzz_A* 1yfh_A* 1t39_A* 1qnt_A 1t38_A*
Probab=100.00 E-value=4.4e-51 Score=332.70 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=137.3
Q ss_pred cceeEEEEEEeccCccceEEEEEecccccc-cc-cccch--hhhh-----hcccCChhHHHHHHHHHHHhcCCCCCCccc
Q psy12847 18 IGTKMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS--HIEY-----IKMFESKQSRDIIDRLEAYIVNPKQNCLDI 88 (188)
Q Consensus 18 ~g~~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~--~~~~-----~~~~~~~~l~~~~~qL~~YF~G~~~~~F~l 88 (188)
..+.|+|.+++|| +|.+.|+++++||+. +| ++... .... .....++.++++.+||++||+|++.. |++
T Consensus 6 ~~~~m~~~~~~SP--lG~l~l~a~~~gL~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ql~~Yf~g~~~~-f~l 82 (182)
T 3l00_A 6 KDCEMKRTTLDSP--LGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAI-EEF 82 (182)
T ss_dssp --CCCEEEEECCT--TSCEEEEEETTEEEEEEECC------------------CCSSHHHHHHHHHHHHHHCGGGG-GGS
T ss_pred ccceEEEEEEECC--ceEEEEEEECCEEEEEEECCCcchhhhhhhcccchhhccCcHHHHHHHHHHHHHHcCCCcC-CCc
Confidence 3567899999999 999999999999999 88 54321 1111 11123367899999999999999998 999
Q ss_pred ccc------cCCChhHHHHHHH-hcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCC
Q psy12847 89 KFK------IEGTDFQKLVWSE-LCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYS 161 (188)
Q Consensus 89 pl~------~~gt~f~~~V~~~-l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~ 161 (188)
||+ +.||+||++||++ +++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||++||+|+||+
T Consensus 83 pl~~~~~~~~~gt~Fq~~Vw~~ll~~IP~G~t~tYg~iA~~~g~p~a~RaVG~A~~~Np~~i~iPCHRVv~~~G~l~gy~ 162 (182)
T 3l00_A 83 PVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYE 162 (182)
T ss_dssp CCCCBCSGGGTSCCHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHHHTCSSBTTBCGGGEESBTTBCCCCT
T ss_pred CcccccccccCCCHHHHHHHHHHHhhCCCCCEEeHHHHHHHhCCCChHHHHHHHHHhCCCCCeeCceEEECCCCCCCCCC
Confidence 997 5799999999976 568999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcccccc
Q psy12847 162 SGKYIKETLIKIEQKIVSE 180 (188)
Q Consensus 162 ~g~~~k~~LL~~E~~~~~~ 180 (188)
||.++|++||++|++.++.
T Consensus 163 gG~~~K~~LL~~Eg~~~~~ 181 (182)
T 3l00_A 163 GGLAVKEWLLAHEGHRLGK 181 (182)
T ss_dssp TCHHHHHHHHHHTTCTTCC
T ss_pred CCHHHHHHHHHhcCCccCC
Confidence 9999999999999998853
No 3
>1wrj_A Methylated-DNA--protein-cysteine methyltransferase; 2.00A {Sulfolobus tokodaii}
Probab=100.00 E-value=5.1e-50 Score=319.66 Aligned_cols=148 Identities=26% Similarity=0.474 Sum_probs=134.4
Q ss_pred EEEEEEeccCccceEEEEEecccccc-cc-cccchhhhhhcccCChhHHHHHHHHHHHhcCCCCCCcccccccCC-ChhH
Q psy12847 22 MLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYSHIEYIKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFKIEG-TDFQ 98 (188)
Q Consensus 22 ~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~~~~~~~~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl~~~g-t~f~ 98 (188)
++|.+++|| +|.+.++++++||+. +| ++.... ..+++.++++.+||++||+|++.. |++|+++.| |+||
T Consensus 2 i~~~~~~tp--~G~l~l~~~~~gl~~l~f~~~~~~~-----~~~~~~~~~~~~~l~~Yf~G~~~~-f~lpl~~~g~t~fq 73 (156)
T 1wrj_A 2 IVYGLYKSP--FGPITVAKNEKGFVMLDFCDCAERS-----SLDNDYFTDFFYKLDLYFEGKKVD-LTEPVDFKPFNEFR 73 (156)
T ss_dssp CEEEEEEET--TEEEEEEECSSCEEEEESSCCCCGG-----GBCGGGGHHHHHHHHHHTTTCCCC-CCCCBCCTTSCHHH
T ss_pred eEEEEEeCC--CeEEEEEEECCEEEEEEecCCcccc-----cCCCHHHHHHHHHHHHHHcCCCCC-CCeeecCCCCCHHH
Confidence 457899999 999999999999999 88 432211 133467889999999999999999 999999999 9999
Q ss_pred HHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhcccc
Q psy12847 99 KLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIV 178 (188)
Q Consensus 99 ~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~~~~ 178 (188)
++||++|++||||+|+||+|||+.+|.|+ ||||+||++||++++|||||||++|| |+||+||.+.|++||++||+.+
T Consensus 74 ~~V~~~l~~IP~G~~~tYg~iA~~~g~p~--RaVG~A~~~np~~~~iPcHRVv~~~G-l~gy~~G~~~k~~LL~~Eg~~~ 150 (156)
T 1wrj_A 74 IRVFKEVMRIKWGEVRTYKQVADAVKTSP--RAVGTALSKNNVLLIIPCHRVIGEKS-LGGYSRGVELKRKLLELEGIDV 150 (156)
T ss_dssp HHHHHHHTTSCTTCCEEHHHHHHHTTSCH--HHHHHHHHTCSBTTTSCGGGEECSSS-CCCCTTCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCCCCCceEcHHHHHHHhCCCc--cHHHHHHHhCCCCCccCCCeEECCCC-CCCCCccHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999998 99999999999999999999999999 9999999999999999999987
Q ss_pred cc
Q psy12847 179 SE 180 (188)
Q Consensus 179 ~~ 180 (188)
+.
T Consensus 151 ~~ 152 (156)
T 1wrj_A 151 AK 152 (156)
T ss_dssp --
T ss_pred cc
Confidence 53
No 4
>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} SCOP: a.4.2.1 c.55.7.1 PDB: 1eh7_A 1eh8_A*
Probab=100.00 E-value=1.1e-49 Score=330.40 Aligned_cols=162 Identities=29% Similarity=0.390 Sum_probs=141.9
Q ss_pred eEEEEEEeccCccceEEEEEecccccc-cc-cccch--hhhh-----hcccCChhHHHHHHHHHHHhcCCCCCCcccccc
Q psy12847 21 KMLIAYYDKSCIIQAIMFGANPEYLYV-DL-TKLYS--HIEY-----IKMFESKQSRDIIDRLEAYIVNPKQNCLDIKFK 91 (188)
Q Consensus 21 ~~~~~~~~tP~~~G~i~i~a~~~gL~~-~f-d~~~~--~~~~-----~~~~~~~~l~~~~~qL~~YF~G~~~~~F~lpl~ 91 (188)
.|+|.+++|| +|.+.|+++++||+. .| ++... .... ....+++.++++.+||++||+|++.. |++||+
T Consensus 6 ~m~~~~~~sP--lG~l~la~~~~gl~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~qL~~YF~G~~~~-f~lPL~ 82 (207)
T 1eh6_A 6 EMKRTTLDSP--LGKLELSGCEQGLHEIKLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAI-EEFPVP 82 (207)
T ss_dssp CCEEEEECCT--TSCEEEEEETTEEEEEEECC---------CCCCCBSSCCCSHHHHHHHHHHHHHHHCGGGG-GGSCCC
T ss_pred eEEEEEEECC--CcEEEEEEECCEEEEEEeCCCcchhhhhhhcccccccccCCHHHHHHHHHHHHHHCCCCcc-CCcccc
Confidence 5789999999 999999999999999 88 43321 1000 11123467899999999999999998 999998
Q ss_pred ------cCCChhHHHH-HHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcH
Q psy12847 92 ------IEGTDFQKLV-WSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGK 164 (188)
Q Consensus 92 ------~~gt~f~~~V-~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~ 164 (188)
+.||+||++| |++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+||+||.
T Consensus 83 ~~~~~~~~gt~Fq~~V~~~~l~~IP~G~~~TYg~iA~~~G~p~a~RaVG~A~~~Np~~~~iPCHRVv~~~G~l~gy~gG~ 162 (207)
T 1eh6_A 83 ALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGL 162 (207)
T ss_dssp CBCSHHHHSCCHHHHHHHHHHHHCCTTCCEEHHHHHHHTTCTTCHHHHHHHTTSCSSBTTBCGGGEECTTSCCCCCTTCH
T ss_pred cccccccCCCHHHHHHHHHHhhcCCCCcEECHHHHHHHHCCCCcHHHHHHHHHhCCCCCcCCCCeEECCCCCCCCCCCcH
Confidence 5899999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccccc
Q psy12847 165 YIKETLIKIEQKIVSEKIQVH 185 (188)
Q Consensus 165 ~~k~~LL~~E~~~~~~~~~v~ 185 (188)
++|++||++||+.+...+++.
T Consensus 163 ~~K~~LL~~Eg~~~~~~g~~~ 183 (207)
T 1eh6_A 163 AVKEWLLAHEGHRLGKPGLGG 183 (207)
T ss_dssp HHHHHHHHHTTCSSCCCCC--
T ss_pred HHHHHHHHHcCCcccCCCccC
Confidence 999999999999998887764
No 5
>2g7h_A Methylated-DNA--protein-cysteine methyltransferase; protein structure, DNA repair, DNA methyltransferase; NMR {Methanocaldococcus jannaschii}
Probab=100.00 E-value=7.8e-43 Score=280.42 Aligned_cols=141 Identities=25% Similarity=0.362 Sum_probs=121.4
Q ss_pred eEEEEEecccccc-cccccchhhh---h---hcccCChhHHHHHHHHHHHhcCC-----CCCCcccccccCCChhHHHHH
Q psy12847 35 AIMFGANPEYLYV-DLTKLYSHIE---Y---IKMFESKQSRDIIDRLEAYIVNP-----KQNCLDIKFKIEGTDFQKLVW 102 (188)
Q Consensus 35 ~i~i~a~~~gL~~-~fd~~~~~~~---~---~~~~~~~~l~~~~~qL~~YF~G~-----~~~~F~lpl~~~gt~f~~~V~ 102 (188)
...+++++++++. .+......+. + ....+++.+.++.+||++||+|+ +.. |++|+++ |+||++||
T Consensus 9 ~~Gi~~~~~~~~~v~lp~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~Yf~G~~~~~~~~~-f~lpl~~--t~Fq~~Vw 85 (167)
T 2g7h_A 9 FIGMIFKGNQLVRNTIPLRREEIFNFMDGEVVSNPEDEHLKVAEIILKLYFAEIDDKKVREL-ISYKLEV--PEFTKKVL 85 (167)
T ss_dssp EEEEEESSSSEEEEECCCCCTTGGGGCSSCSCSCCTTTTHHHHHHHHHHHTTCCCSCCTTTT-CCBCSCC--SSCCHHHH
T ss_pred EEEEEEcCCCEEEEecCCCcHHHHHhCCcccccCCCCHHHHHHHHHHHHHHCCCCccccccc-cCccccc--HHHHHHHH
Confidence 5678889999988 7721111111 1 11123467899999999999999 888 9999999 99999999
Q ss_pred HHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHhccccccc
Q psy12847 103 SELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIEQKIVSEK 181 (188)
Q Consensus 103 ~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E~~~~~~~ 181 (188)
++|++||||+|+||+|||+.+|.| +||||+||++||++++|||||||+++| ++||+||.+.|++||++||+.++.-
T Consensus 86 ~~l~~IP~G~t~TYg~iA~~~G~p--~RaVG~Al~~Np~~i~iPCHRVv~~~G-l~gy~gG~~~K~~LL~~Eg~~~~~~ 161 (167)
T 2g7h_A 86 DIVKDIEFGKTLTYGDIAKKLNTS--PRAVGMALKRNPLPLIIPCHRVVAKNS-LGGYSYGLDKKKFILERERLNMVSF 161 (167)
T ss_dssp HHHTTCCTTCCEEHHHHHHHHTSC--HHHHHHHHHTCSCTTTSGGGGEECSSS-CCCSSSCSHHHHHHHHHHHSSCCCC
T ss_pred HHhcCCCCCCEeeHHHHHHHhCCC--HHHHHHHHHhCCCCCccCceeEECCCC-CCCCCccHHHHHHHHHHhCCccccC
Confidence 999999999999999999999998 799999999999999999999999999 9999999999999999999977543
No 6
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis} SCOP: a.4.2.1 c.55.7.1
Probab=100.00 E-value=1.1e-40 Score=269.73 Aligned_cols=152 Identities=26% Similarity=0.385 Sum_probs=124.7
Q ss_pred eEEEEEEeccCccceEEEEEe-cccccc-cc-cccch---h-------hhhhcccCC--hhHHHHHHHHHHHhcCCCCCC
Q psy12847 21 KMLIAYYDKSCIIQAIMFGAN-PEYLYV-DL-TKLYS---H-------IEYIKMFES--KQSRDIIDRLEAYIVNPKQNC 85 (188)
Q Consensus 21 ~~~~~~~~tP~~~G~i~i~a~-~~gL~~-~f-d~~~~---~-------~~~~~~~~~--~~l~~~~~qL~~YF~G~~~~~ 85 (188)
+|+|..++.. -..+.+... ++|||. .| +.... . +...+.... .....+.+++.+||.|....
T Consensus 1 ~i~~~~~~~~--~~~~~ig~~~~~gI~~i~f~d~~~~l~~~~~~~~~~l~~~~~~a~l~~~~~~~~~~i~~~~~g~~~~- 77 (174)
T 1mgt_A 1 MLSVEKFRVG--ERVVWIGVIFSGRVQGIAFAFDRGTLMKRIHDLAEHLGKRGVSISLDVQPSDYPEKVFKVLIGELDN- 77 (174)
T ss_dssp CEEEEEEEET--TEEEEEEEEESSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCCCBCCCSHHHHHHHHHTTSSCG-
T ss_pred CeEEEEEeeC--CceEEEEEecCCCEEEEEecCChHHHHHHHHHHHHHHHHhcccceeccCcHHHHHHHHHHHcccccC-
Confidence 4677777776 667888887 999999 88 43321 1 222222111 12234567788999999887
Q ss_pred cc--cccccCC-ChhHHHHHHHhc-ccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCC
Q psy12847 86 LD--IKFKIEG-TDFQKLVWSELC-KIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYS 161 (188)
Q Consensus 86 F~--lpl~~~g-t~f~~~V~~~l~-~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~ 161 (188)
|+ .|+++.| |+||++||++|+ +||+|+|+||+|||+.+|.| +||||+||++||++++|||||||+++| ++||+
T Consensus 78 ~~~~~~l~~~g~t~Fq~~V~~~l~~~IP~G~~~TYg~iA~~~G~p--~RaVG~A~~~Np~~~~iPcHRVv~~~G-l~gy~ 154 (174)
T 1mgt_A 78 ASFLRELSFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTS--PRAVGGAMKRNPYPIVVPCHRVVAHDG-IGYYS 154 (174)
T ss_dssp GGGGGGBCCTTCCHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSC--HHHHHHHHHTCSCTTTSCGGGEEBTTB-CCCCT
T ss_pred cccCCcccccCCChHHHHHHHHHHccCCCCceEeHHHHHHHhCCC--HHHHHHHHHhCCCCCcCCcCeEECCCC-CCCCC
Confidence 75 5899999 999999999999 99999999999999999998 999999999999999999999999999 99999
Q ss_pred CcHHHHHHHHHHhcccc
Q psy12847 162 SGKYIKETLIKIEQKIV 178 (188)
Q Consensus 162 ~g~~~k~~LL~~E~~~~ 178 (188)
||.++|++||++||+.+
T Consensus 155 ~g~~~K~~LL~~Egv~~ 171 (174)
T 1mgt_A 155 SGIEEKKFLLEIEGVKE 171 (174)
T ss_dssp TCHHHHHHHHHHTTC--
T ss_pred ccHHHHHHHHHHhCCcc
Confidence 99999999999999865
No 7
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=100.00 E-value=1.9e-39 Score=244.44 Aligned_cols=91 Identities=25% Similarity=0.326 Sum_probs=88.8
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCCCCcHHHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGYSSGKYIKETLIKIE 174 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy~~g~~~k~~LL~~E 174 (188)
|+||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+||++|.+.|++||++|
T Consensus 2 t~F~~~V~~~l~~IP~G~v~TYg~iA~~~G~p~aaRaVG~Al~~Np~~~~iPcHRVv~s~G~l~gy~~g~~~k~~LL~~E 81 (108)
T 2kif_A 2 DQFLVQIFAVIHQIPKGKVSTYGEIAKMAGYPGYARHVGKALGNLPEGSKLPWFRVINSQGKISLKGRDLDRQKQKLEAE 81 (108)
T ss_dssp CHHHHHHHHHHTTCCTTCBEEHHHHHHHHTCTTCHHHHHHHHHHSCTTCSSCCTTEECTTSBCSCCTHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhcCCCCCcEeHHHHHHHhCCCCcHHHHHHHHHhCCCCCCCCCceeECCCCCCCCCCCcHHHHHHHHHHc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccc
Q psy12847 175 QKIVSEKIQVH 185 (188)
Q Consensus 175 ~~~~~~~~~v~ 185 (188)
|+.++..++|+
T Consensus 82 gv~~~~~grvd 92 (108)
T 2kif_A 82 GIEVSEIGKIA 92 (108)
T ss_dssp TCCCBTTTBCC
T ss_pred CCeeCCCCEEE
Confidence 99999988874
No 8
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=100.00 E-value=5.5e-38 Score=239.04 Aligned_cols=89 Identities=28% Similarity=0.503 Sum_probs=85.0
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCC--CCcHHHHHHHH
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGY--SSGKYIKETLI 171 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy--~~g~~~k~~LL 171 (188)
.++||++||++|++||||+|+||+|||+.+|.|+++||||+||++||++++|||||||+++|+|+|| .+|.+.|++||
T Consensus 3 ~t~Fq~~Vw~~l~~IP~G~v~TYg~IA~~~G~p~aaRaVG~Al~~Np~~i~IPCHRVV~s~G~l~g~~~~~G~~~k~~LL 82 (116)
T 3gva_A 3 MDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKDRL 82 (116)
T ss_dssp HHHHHHHHHHHHTTSCTTCBBCHHHHHHHTTCTTCHHHHHHHHHTSCTTCSSCGGGBCCTTSBCCCTTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCCCCCeEeHHHHHHHhCCCCcHHHHHHHHHhCCCCcCCCceEEECCCCCCCCCcCCCcHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999996 58999999999
Q ss_pred HHhcccccccc
Q psy12847 172 KIEQKIVSEKI 182 (188)
Q Consensus 172 ~~E~~~~~~~~ 182 (188)
++||+.+...+
T Consensus 83 ~~Egv~~~~~~ 93 (116)
T 3gva_A 83 EEEGVEIYQTS 93 (116)
T ss_dssp HHTTCCCEECT
T ss_pred HHcCCcccCCC
Confidence 99999997654
No 9
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.32 E-value=0.043 Score=38.27 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=35.8
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~N 139 (188)
++.+++|++.|.+.++|+..|+.+||+.+|.+ .+.|-.++.+-
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs--r~tV~~~L~~L 51 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGTP--KKEINRVLYSL 51 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTCC--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcC--HHHHHHHHHHH
Confidence 34578899999999999999999999999985 46677776653
No 10
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=91.04 E-value=0.27 Score=33.60 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=33.8
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
+.+++|+..|.+-+.|+.+|+.+||+.+|.++ +.|-+.+.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~--~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPK--KEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCH--HHHHHHHHH
Confidence 44688999999999999999999999999854 566666554
No 11
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=90.23 E-value=0.42 Score=33.09 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=34.2
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcH--HHHHHHHhh
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSA--RAVANACGQ 138 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~--RaVg~a~~~ 138 (188)
+-++.|.+++..+|.|+.+|=.+||+++|.++.. |++-+-..+
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kk 56 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKE 56 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 5678899999999999999999999999998742 444444333
No 12
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=78.11 E-value=3.8 Score=33.59 Aligned_cols=53 Identities=26% Similarity=0.247 Sum_probs=37.8
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCC
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGY 160 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy 160 (188)
.+...+++.|. -|+-.|+.+||+.+|. ..-.|-++|..-+. -++..+|+|-||
T Consensus 22 ~~~~~llr~la---~Grpv~~~~LA~~~g~--~~~~v~~~L~~l~~-------~~~D~~G~Ivgy 74 (220)
T 3f2g_A 22 DLLVPLLRELA---KGRPVSRTTLAGILDW--PAERVAAVLEQATS-------TEYDKDGNIIGY 74 (220)
T ss_dssp HHHHHHHHHHT---TTSCBCHHHHHHHHTC--CHHHHHHHHHHCTT-------CEECTTSCEEES
T ss_pred HHHHHHHHHHh---cCCCCCHHHHHHHhCc--CHHHHHHHHHhCCc-------EEECCCCCEEEe
Confidence 35556666655 8999999999999998 56778888887763 235555555444
No 13
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=76.79 E-value=6.1 Score=25.20 Aligned_cols=39 Identities=10% Similarity=0.081 Sum_probs=28.1
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHH
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANA 135 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a 135 (188)
++-+++|+...--+...+-.||.|||+.+|.+ ...|.+.
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgis--~~tV~~~ 45 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT--RERIRQI 45 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCC--HHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCcC--HHHHHHH
Confidence 67788887766555445779999999999984 4444443
No 14
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=75.74 E-value=3.1 Score=29.15 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=29.9
Q ss_pred HHHHHHhcccCCCceeCHHHHHHHhCCCC--cHHHHHHHHhhCCCC
Q psy12847 99 KLVWSELCKIPFGSLCSYADVARNIGRPK--SARAVANACGQNNIP 142 (188)
Q Consensus 99 ~~V~~~l~~IP~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~Np~~ 142 (188)
-+||++|..- | ..||++|++..|... ...|+|.-.+.|-+.
T Consensus 11 G~VW~~L~~~--~-~~s~~el~k~t~l~d~el~lAIGWLaREdKI~ 53 (82)
T 2l02_A 11 GKVWHALNEA--D-GISIPELARKVNLSVESTALAVGWLARENKVV 53 (82)
T ss_dssp HHHHHHHHHC--C-SBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhcc--C-CCCHHHHHHHhCCCHHHHHHHHHHHhccCcee
Confidence 4699999983 4 899999999999732 345666666666543
No 15
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=75.68 E-value=5.7 Score=25.70 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=28.3
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHH
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVAN 134 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~ 134 (188)
++-+++|+...--+--++-.||.|||+.+|.+ .+.|-+
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is--~~tV~~ 49 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVT--RERIRQ 49 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCC--HHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCC--HHHHHH
Confidence 77888888766556555789999999999974 444444
No 16
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=68.40 E-value=7.3 Score=26.91 Aligned_cols=40 Identities=5% Similarity=0.068 Sum_probs=30.5
Q ss_pred HHHHHHhcccCCCceeCHHHHHHHhCC-CC--cHHHHHHHHhhCCC
Q psy12847 99 KLVWSELCKIPFGSLCSYADVARNIGR-PK--SARAVANACGQNNI 141 (188)
Q Consensus 99 ~~V~~~l~~IP~G~~~TY~~lA~~~g~-p~--~~RaVg~a~~~Np~ 141 (188)
-+||++|..- ...||++|++..|. .. ...|+|.-.+.|-+
T Consensus 13 G~VW~~L~~~---~~~s~~el~k~t~l~~d~el~lAiGWLaREdKI 55 (77)
T 2l01_A 13 GQIWEALNGT---EGLTQKQIKKATKLKADKDFFLGLGWLLREDKV 55 (77)
T ss_dssp HHHHHHHTTS---SCEEHHHHHHHHTCSCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhcC---CCCCHHHHHHHHCCCCHHHHHHHHHHHhhcCce
Confidence 4699999983 58999999999997 32 35677776666755
No 17
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=64.96 E-value=13 Score=24.98 Aligned_cols=32 Identities=9% Similarity=0.041 Sum_probs=24.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRP 126 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p 126 (188)
++-++.|+...--+--|+-.||.+||+.+|.+
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis 51 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVT 51 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCC
Confidence 67778887654434444789999999999984
No 18
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=64.71 E-value=10 Score=26.35 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.7
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
.+-.+++++.|.. -| .|+.+||+.+|.++ .+|-+.+.+
T Consensus 16 ~~~~~~IL~lL~~--~g--~sa~eLAk~LgiSk--~aVr~~L~~ 53 (82)
T 1oyi_A 16 AEIVCEAIKTIGI--EG--ATAAQLTRQLNMEK--REVNKALYD 53 (82)
T ss_dssp HHHHHHHHHHHSS--ST--EEHHHHHHHSSSCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cC--CCHHHHHHHHCcCH--HHHHHHHHH
Confidence 4556778888884 56 99999999999844 455555544
No 19
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=59.02 E-value=17 Score=24.04 Aligned_cols=40 Identities=18% Similarity=0.134 Sum_probs=28.0
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHH
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANAC 136 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~ 136 (188)
+.+-+.+|+..|.. |...|.++||+.+|.+++ .|.+..-.
T Consensus 22 ~~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tvs~~l~~L~ 63 (99)
T 3cuo_A 22 SHPKRLLILCMLSG---SPGTSAGELTRITGLSASATSQHLARMR 63 (99)
T ss_dssp CSHHHHHHHHHHTT---CCSEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHh---CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 46777888887764 556899999999997543 24444333
No 20
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=58.96 E-value=7.1 Score=30.31 Aligned_cols=41 Identities=17% Similarity=0.001 Sum_probs=31.3
Q ss_pred ChhHHHHHHHhccc--CCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKI--PFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~I--P~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
|+-|++|++.+.+. -.|...|..|||+.+|.+.. +|-..+.
T Consensus 4 t~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~--tv~~~l~ 46 (196)
T 3k2z_A 4 TERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPR--GALLHLI 46 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcH--HHHHHHH
Confidence 78899999988764 46778999999999998533 4555443
No 21
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=56.93 E-value=18 Score=24.05 Aligned_cols=37 Identities=14% Similarity=0.070 Sum_probs=26.8
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
-++-+++|+..+. .| .||.|||+.+|. +.+.|-+.+.
T Consensus 22 Lt~~e~~vl~l~~---~g--~s~~eIA~~l~i--s~~tV~~~l~ 58 (82)
T 1je8_A 22 LTPRERDILKLIA---QG--LPNKMIARRLDI--TESTVKVHVK 58 (82)
T ss_dssp SCHHHHHHHHHHT---TT--CCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cC--CCHHHHHHHHCc--CHHHHHHHHH
Confidence 3788888887742 34 799999999997 5555655443
No 22
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.73 E-value=23 Score=22.18 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=26.0
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
-++-+++|+..+. .| .|+.+||+.+|. +.+.|-+.+.
T Consensus 12 L~~~e~~il~~~~---~g--~s~~eIA~~l~i--s~~tV~~~~~ 48 (74)
T 1fse_A 12 LTKREREVFELLV---QD--KTTKEIASELFI--SEKTVRNHIS 48 (74)
T ss_dssp CCHHHHHHHHHHT---TT--CCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cC--CCHHHHHHHHCC--CHHHHHHHHH
Confidence 3778888887752 34 499999999997 4555555444
No 23
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=54.42 E-value=18 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.171 Sum_probs=28.8
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
-|+-+++|+..+. .| .||.|||+.+|. +.+.|-+.+.+
T Consensus 30 Lt~rE~~Vl~l~~---~G--~s~~eIA~~L~i--S~~TV~~~~~~ 67 (90)
T 3ulq_B 30 LTPRECLILQEVE---KG--FTNQEIADALHL--SKRSIEYSLTS 67 (90)
T ss_dssp CCHHHHHHHHHHH---TT--CCHHHHHHHHTC--CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cC--CCHHHHHHHHCc--CHHHHHHHHHH
Confidence 4888899988775 35 589999999997 56666655543
No 24
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=51.30 E-value=17 Score=23.38 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.2
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS 128 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~ 128 (188)
.+..++|++.|.+ .|..+|..+||+.+|.|++
T Consensus 9 ~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~ 40 (67)
T 2heo_A 9 DNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKK 40 (67)
T ss_dssp CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHH
T ss_pred cHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHH
Confidence 3456789998876 4567999999999998753
No 25
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=50.61 E-value=28 Score=25.75 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCCCCcccccccCC--ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 69 DIIDRLEAYIVNPKQNCLDIKFKIEG--TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 69 ~~~~qL~~YF~G~~~~~F~lpl~~~g--t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
++...|.+||.|.. +-+|-.... ..-.+++|+... |. +..+||++.|. +.|.|-..+++
T Consensus 55 e~~~~L~~~~gG~~---iYIPk~~~~~~~~Rn~~I~~~f~----G~--n~~eLArkYgL--Ser~I~~Ii~~ 115 (129)
T 1rr7_A 55 EIVVAICKHLGGGQ---VYIPRGQALDSLIRDLRIWNDFN----GR--NVSELTTRYGV--TFNTVYKAIRR 115 (129)
T ss_dssp HHHHHHHHHHCSSC---CCCCCSHHHHHHHHHHHHHHHCC----SS--CHHHHHHHHTC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCee---EEeeCCchHHHHHHHHHHHHHhC----CC--CHHHHHHHHCC--CHHHHHHHHHH
Confidence 88899999999984 345543321 123344666543 53 89999999997 88888887754
No 26
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=50.12 E-value=29 Score=21.43 Aligned_cols=37 Identities=22% Similarity=0.025 Sum_probs=24.2
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++-++.|+...- .+-.||.+||+.+|. +...|-+.+.
T Consensus 17 ~~~~r~il~l~~----~~g~s~~eIA~~lgi--s~~tv~~~~~ 53 (70)
T 2o8x_A 17 TTDQREALLLTQ----LLGLSYADAAAVCGC--PVGTIRSRVA 53 (70)
T ss_dssp CHHHHHHHHHHH----TSCCCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HcCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 567777765431 234799999999997 4455544443
No 27
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=50.04 E-value=20 Score=24.42 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=25.7
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANAC 136 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~ 136 (188)
-++-+++|+..+ .+-.||.|||+.+|. +.+.|-+.+
T Consensus 28 Lt~~e~~vl~l~-----~~g~s~~eIA~~l~i--s~~tV~~~l 63 (95)
T 3c57_A 28 LTDQERTLLGLL-----SEGLTNKQIADRMFL--AEKTVKNYV 63 (95)
T ss_dssp CCHHHHHHHHHH-----HTTCCHHHHHHHHTC--CHHHHHHHH
T ss_pred CCHHHHHHHHHH-----HcCCCHHHHHHHHCc--CHHHHHHHH
Confidence 378888888774 344789999999997 445554443
No 28
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=49.75 E-value=31 Score=24.98 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=33.0
Q ss_pred cccC-CChhHHHHHHHhcc------cCCCcee-CHHHHHHHhCCCC-cHHHHHHHHhhC
Q psy12847 90 FKIE-GTDFQKLVWSELCK------IPFGSLC-SYADVARNIGRPK-SARAVANACGQN 139 (188)
Q Consensus 90 l~~~-gt~f~~~V~~~l~~------IP~G~~~-TY~~lA~~~g~p~-~~RaVg~a~~~N 139 (188)
++.. ..|.-++|++.|.+ +++|+.. |-.+||+.+|.-. ..|..=..|...
T Consensus 7 id~~s~~PlY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~e 65 (134)
T 4ham_A 7 INTKSQLPIYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQ 65 (134)
T ss_dssp CCTTSSSCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 4443 36777777766643 7999999 9999999999732 234433444443
No 29
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=49.74 E-value=18 Score=25.86 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=25.2
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++.+.+++..|.. +...|+++||+.+|. +...|...+.
T Consensus 3 d~~~~~il~~L~~---~~~~~~~ela~~lg~--s~~tv~~~l~ 40 (141)
T 1i1g_A 3 DERDKIILEILEK---DARTPFTEIAKKLGI--SETAVRKRVK 40 (141)
T ss_dssp CSHHHHHHHHHHH---CTTCCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 3466778777753 334699999999997 4444444443
No 30
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=49.34 E-value=29 Score=22.14 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=24.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANAC 136 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~ 136 (188)
++-+++|+..+ .+-.||.+||+.+|. +.+.|-+.+
T Consensus 18 ~~~e~~vl~l~-----~~g~s~~eIA~~l~i--s~~tV~~~~ 52 (79)
T 1x3u_A 18 SERERQVLSAV-----VAGLPNKSIAYDLDI--SPRTVEVHR 52 (79)
T ss_dssp CHHHHHHHHHH-----TTTCCHHHHHHHTTS--CHHHHHHHH
T ss_pred CHHHHHHHHHH-----HcCCCHHHHHHHHCc--CHHHHHHHH
Confidence 56777777654 245699999999997 445555444
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=48.80 E-value=46 Score=23.13 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 93 EGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 93 ~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
.-|+-+++|+..+. +-.||.|||+.+|. +.+.|-+.+.
T Consensus 34 ~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~i--S~~TV~~~l~ 71 (99)
T 1p4w_A 34 RLSPKESEVLRLFA-----EGFLVTEIAKKLNR--SIKTISSQKK 71 (99)
T ss_dssp SCCHHHHHHHHHHH-----HTCCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 34888899987653 34689999999997 5555555443
No 32
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=47.39 E-value=33 Score=22.91 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=28.4
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
+.+.+.+++..|.+ | ..|.++||+.+|.+ ...|.+.+..
T Consensus 21 ~~~~r~~Il~~L~~---~-~~~~~ela~~l~is--~~tvs~~L~~ 59 (98)
T 3jth_A 21 ANERRLQILCMLHN---Q-ELSVGELCAKLQLS--QSALSQHLAW 59 (98)
T ss_dssp CSHHHHHHHHHTTT---S-CEEHHHHHHHHTCC--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc---C-CCCHHHHHHHHCcC--HHHHHHHHHH
Confidence 56778889888876 3 58999999999974 3345555444
No 33
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=45.95 E-value=33 Score=24.06 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=22.1
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRP 126 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p 126 (188)
++-|+.|+..---+--++-.||.|||+.+|.+
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS 52 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVT 52 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcC
Confidence 55667776553223233789999999999974
No 34
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=45.38 E-value=27 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=27.8
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
+.|.+.+++..|.. |. .|.++||+.+|.+++ .|...+..
T Consensus 21 ~~~~r~~Il~~L~~---~~-~~~~ela~~l~is~~--tvs~~L~~ 59 (102)
T 3pqk_A 21 SHPVRLMLVCTLVE---GE-FSVGELEQQIGIGQP--TLSQQLGV 59 (102)
T ss_dssp CSHHHHHHHHHHHT---CC-BCHHHHHHHHTCCTT--HHHHHHHH
T ss_pred CCHHHHHHHHHHHh---CC-CCHHHHHHHHCcCHH--HHHHHHHH
Confidence 56777888888865 44 899999999997544 44444443
No 35
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=44.89 E-value=30 Score=25.14 Aligned_cols=39 Identities=23% Similarity=0.185 Sum_probs=27.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
++.+.+++..|.+= ...|+.+||+.+|.+ ..+|...+.+
T Consensus 4 d~~d~~il~~L~~~---~~~s~~ela~~lg~s--~~tv~~~l~~ 42 (144)
T 2cfx_A 4 DQIDLNIIEELKKD---SRLSMRELGRKIKLS--PPSVTERVRQ 42 (144)
T ss_dssp CHHHHHHHHHHHHC---SCCCHHHHHHHHTCC--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc---CCCCHHHHHHHHCcC--HHHHHHHHHH
Confidence 46777888888653 348999999999973 4444444433
No 36
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=44.56 E-value=16 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=25.7
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHH
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANA 135 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a 135 (188)
.+.++ |+.+.-+--| .||.|||+.+|. +.+-|.+.
T Consensus 61 aLs~R-~eV~klL~~G--~syreIA~~~g~--S~aTIsRv 95 (119)
T 3kor_A 61 SLSQR-LQVAKMIKQG--YTYATIEQESGA--STATISRV 95 (119)
T ss_dssp HHHHH-HHHHHHHHHT--CCHHHHHHHHCC--CHHHHHHH
T ss_pred HHHHH-HHHHHHHHcC--CCHHHHHHHHCC--CHHHHHHH
Confidence 34455 7777777778 899999999996 55555543
No 37
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=43.75 E-value=27 Score=25.48 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=23.1
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRP 126 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p 126 (188)
++.+.+++..|++= ...|+++||+.+|.+
T Consensus 6 d~~~~~il~~L~~~---~~~s~~ela~~lg~s 34 (151)
T 2cyy_A 6 DEIDKKIIKILQND---GKAPLREISKITGLA 34 (151)
T ss_dssp CHHHHHHHHHHHHC---TTCCHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHc---CCCCHHHHHHHHCcC
Confidence 56778888888653 358999999999974
No 38
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=43.43 E-value=28 Score=25.35 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=27.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
++.+++++..|+. +...|+.+||+.+|.. ..+|...+.+
T Consensus 8 d~~d~~il~~L~~---~~~~s~~ela~~lg~s--~~tv~~~l~~ 46 (151)
T 2dbb_A 8 DRVDMQLVKILSE---NSRLTYRELADILNTT--RQRIARRIDK 46 (151)
T ss_dssp CHHHHHHHHHHHH---CTTCCHHHHHHHTTSC--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---cCCCCHHHHHHHHCcC--HHHHHHHHHH
Confidence 5677788888765 3458999999999973 4444444443
No 39
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=42.81 E-value=10 Score=26.38 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=31.1
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++..++|+++|... |+-++=+|||+.+|.|+. -|-.|+.
T Consensus 18 ~d~eekVLe~Lkea--G~PlkageIae~~GvdKK--eVdKaik 56 (80)
T 2lnb_A 18 GHLEQRILQVLTEA--GSPVKLAQLVKECQAPKR--ELNQVLY 56 (80)
T ss_dssp HHHHHHHHHHHHHH--TSCEEHHHHHHHHTSCHH--HHHHHHH
T ss_pred chHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHH--HHHHHHH
Confidence 56788999999987 899999999999998753 4444443
No 40
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=41.50 E-value=30 Score=26.31 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=28.2
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
-++.++++++.|+.= | ..|+++||+.+|. +..+|..-+.
T Consensus 25 ld~~d~~IL~~L~~~--~-~~s~~eLA~~lgl--S~~tv~~rl~ 63 (171)
T 2e1c_A 25 LDEIDKKIIKILQND--G-KAPLREISKITGL--AESTIHERIR 63 (171)
T ss_dssp CCHHHHHHHHHHHHC--T-TCCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--C-CCCHHHHHHHHCc--CHHHHHHHHH
Confidence 467888999988763 3 5999999999997 4444444443
No 41
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=39.39 E-value=24 Score=23.60 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=26.2
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
-++-+++|+..+ -+-.||.+||+.+|. +.+.|-+.+.
T Consensus 30 Lt~~e~~vl~l~-----~~g~s~~eIA~~l~i--s~~tV~~~l~ 66 (91)
T 2rnj_A 30 LTEREMEILLLI-----AKGYSNQEIASASHI--TIKTVKTHVS 66 (91)
T ss_dssp CCSHHHHHHHHH-----HTTCCTTHHHHHHTC--CHHHHHHHHH
T ss_pred CCHHHHHHHHHH-----HcCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 377888888764 234789999999997 5555554443
No 42
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=39.04 E-value=39 Score=24.94 Aligned_cols=38 Identities=5% Similarity=0.031 Sum_probs=26.5
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++.+.++++.|..= | ..|+++||+.+|.+ ..+|...+.
T Consensus 9 d~~~~~il~~L~~~--~-~~s~~ela~~lg~s--~~tv~~~l~ 46 (162)
T 2p5v_A 9 DKTDIKILQVLQEN--G-RLTNVELSERVALS--PSPCLRRLK 46 (162)
T ss_dssp CHHHHHHHHHHHHC--T-TCCHHHHHHHHTSC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHc--C-CCCHHHHHHHHCcC--HHHHHHHHH
Confidence 56778888888753 2 37999999999974 334444433
No 43
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=38.32 E-value=52 Score=23.72 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=21.6
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCC
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRP 126 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p 126 (188)
+.+.+++..|+.= ...|+.+||+.+|.+
T Consensus 3 ~~~~~il~~L~~~---~~~~~~ela~~lg~s 30 (150)
T 2pn6_A 3 EIDLRILKILQYN---AKYSLDEIAREIRIP 30 (150)
T ss_dssp HHHHHHHHHHTTC---TTSCHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHc---CCCCHHHHHHHHCcC
Confidence 4567788877653 358999999999974
No 44
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=37.82 E-value=27 Score=23.41 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=24.1
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++-+++|+... |-+-.||.+||+.+|. +..+|-+.+.
T Consensus 39 ~~~~r~vl~l~----~~~g~s~~eIA~~lgi--s~~tV~~~l~ 75 (92)
T 3hug_A 39 SAEHRAVIQRS----YYRGWSTAQIATDLGI--AEGTVKSRLH 75 (92)
T ss_dssp CHHHHHHHHHH----HTSCCCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CHHHHHHHHHH----HHcCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 55667776432 1344699999999997 4556655443
No 45
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=37.82 E-value=43 Score=24.31 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=26.4
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++.+.+++..|..= | ..|+.+||+.+|.+ ..+|...+.
T Consensus 6 d~~~~~iL~~L~~~--~-~~s~~ela~~lg~s--~~tv~~~l~ 43 (150)
T 2w25_A 6 DDIDRILVRELAAD--G-RATLSELATRAGLS--VSAVQSRVR 43 (150)
T ss_dssp CHHHHHHHHHHHHC--T-TCCHHHHHHHHTSC--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHc--C-CCCHHHHHHHHCcC--HHHHHHHHH
Confidence 56778888888642 3 48999999999974 334444433
No 46
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=37.65 E-value=19 Score=30.47 Aligned_cols=39 Identities=18% Similarity=0.177 Sum_probs=27.8
Q ss_pred HHHHHHhccc-CCCceeCHHHHHHHhC--CCCcHHHHHHHHh
Q psy12847 99 KLVWSELCKI-PFGSLCSYADVARNIG--RPKSARAVANACG 137 (188)
Q Consensus 99 ~~V~~~l~~I-P~G~~~TY~~lA~~~g--~p~~~RaVg~a~~ 137 (188)
..|++.|.+- ++|...|+.|||+++| .|..++.+.+.|+
T Consensus 44 Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr 85 (368)
T 3reo_A 44 LDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLR 85 (368)
T ss_dssp TTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHH
T ss_pred CCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHH
Confidence 3477788775 6678899999999997 5664555554443
No 47
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=36.34 E-value=41 Score=23.81 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=23.9
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++-++.|+. + +-+-.||.+||+.+|. +..+|.+.+.
T Consensus 111 ~~~~r~v~~-~----~~~g~s~~EIA~~lgi--s~~tV~~~~~ 146 (164)
T 3mzy_A 111 SKFEKEVLT-Y----LIRGYSYREIATILSK--NLKSIDNTIQ 146 (164)
T ss_dssp CHHHHHHHH-H----HTTTCCHHHHHHHHTC--CHHHHHHHHH
T ss_pred CHHHHHHHH-H----HHcCCCHHHHHHHHCC--CHHHHHHHHH
Confidence 455666654 2 2355699999999997 5556655544
No 48
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=35.82 E-value=58 Score=22.69 Aligned_cols=41 Identities=15% Similarity=0.003 Sum_probs=28.2
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-|..|+..|. +...|.++||+.+|.+++ .|.|..-....
T Consensus 36 ~~~~~~iL~~l~----~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g 78 (146)
T 2gxg_A 36 SYLDFLVLRATS----DGPKTMAYLANRYFVTQSAITASVDKLEEMG 78 (146)
T ss_dssp CHHHHHHHHHHT----TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHh----cCCcCHHHHHHHhCCCchhHHHHHHHHHHCC
Confidence 666777777775 456899999999997543 35555444443
No 49
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=34.78 E-value=58 Score=21.72 Aligned_cols=29 Identities=10% Similarity=0.105 Sum_probs=22.2
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCC
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPK 127 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~ 127 (188)
+.+-+.+|+..| .|. .|.++||+.+|.+.
T Consensus 29 ~~~~r~~Il~~L----~~~-~~~~eLa~~l~is~ 57 (96)
T 1y0u_A 29 TNPVRRKILRML----DKG-RSEEEIMQTLSLSK 57 (96)
T ss_dssp SCHHHHHHHHHH----HTT-CCHHHHHHHHTCCH
T ss_pred CCHHHHHHHHHH----cCC-CCHHHHHHHHCcCH
Confidence 456777888877 244 89999999999754
No 50
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=34.46 E-value=65 Score=22.18 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=28.5
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-|..|+..|.. +...|-++||+.+|..++ .|.|..-..+.
T Consensus 28 ~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~L~~~g 71 (138)
T 3bpv_A 28 TDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRRLEESG 71 (138)
T ss_dssp CHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6677778777765 345799999999997432 35555544444
No 51
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=34.30 E-value=39 Score=18.74 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=17.4
Q ss_pred eCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 114 CSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 114 ~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
.|+.+||+.+|. +...|-..+..
T Consensus 22 ~s~~~IA~~lgi--s~~Tv~~~~~~ 44 (51)
T 1tc3_C 22 VSLHEMSRKISR--SRHCIRVYLKD 44 (51)
T ss_dssp CCHHHHHHHHTC--CHHHHHHHHHC
T ss_pred CCHHHHHHHHCc--CHHHHHHHHhh
Confidence 589999999997 55566666543
No 52
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=34.12 E-value=51 Score=24.90 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=27.7
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
.++.+++++..|+.= ...|+.+||+.+|.+ .-+|...+.+
T Consensus 15 ld~~d~~IL~~L~~~---~~~s~~eLA~~lglS--~~tv~~~l~~ 54 (171)
T 2ia0_A 15 LDDLDRNILRLLKKD---ARLTISELSEQLKKP--ESTIHFRIKK 54 (171)
T ss_dssp CCHHHHHHHHHHHHC---TTCCHHHHHHHHTSC--HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc---CCCCHHHHHHHHCcC--HHHHHHHHHH
Confidence 356778888888753 248999999999974 3344444433
No 53
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.93 E-value=56 Score=22.97 Aligned_cols=44 Identities=9% Similarity=0.021 Sum_probs=29.5
Q ss_pred ChhHHHHHHHhccc-CCCceeCHHHHHHHhCCCCc--HHHHHHHHhh
Q psy12847 95 TDFQKLVWSELCKI-PFGSLCSYADVARNIGRPKS--ARAVANACGQ 138 (188)
Q Consensus 95 t~f~~~V~~~l~~I-P~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~ 138 (188)
|+-+.+++..|..+ -.+...|.++||+.+|.+++ .|++..-...
T Consensus 12 t~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~ 58 (139)
T 2x4h_A 12 SRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp CHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHC
Confidence 66777777766543 34667899999999998643 3555444443
No 54
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=33.78 E-value=64 Score=23.89 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=25.4
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
+..+++++.|++= ...||.+||+.+|. +.-+|..-+.+
T Consensus 3 ~~d~~il~~L~~~---~~~s~~~la~~lg~--s~~tv~~rl~~ 40 (162)
T 3i4p_A 3 RLDRKILRILQED---STLAVADLAKKVGL--STTPCWRRIQK 40 (162)
T ss_dssp HHHHHHHHHHTTC---SCSCHHHHHHHHTC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC---CCCCHHHHHHHHCc--CHHHHHHHHHH
Confidence 4556788877752 34699999999997 44444444443
No 55
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=33.63 E-value=54 Score=23.81 Aligned_cols=38 Identities=16% Similarity=0.291 Sum_probs=26.6
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++.+.+++..|++= ...|+.+||+.+|. +..+|...+.
T Consensus 7 d~~d~~il~~L~~~---~~~s~~ela~~lg~--s~~tv~~~l~ 44 (152)
T 2cg4_A 7 DNLDRGILEALMGN---ARTAYAELAKQFGV--SPETIHVRVE 44 (152)
T ss_dssp CHHHHHHHHHHHHC---TTSCHHHHHHHHTS--CHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc---CCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 56777888887653 45899999999997 3444444443
No 56
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=33.35 E-value=28 Score=20.76 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=16.9
Q ss_pred eCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 114 CSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 114 ~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
.|+.+||+.+|. +.+.|.+.+.
T Consensus 32 ~s~~eIA~~lgi--s~~TV~~~l~ 53 (55)
T 2x48_A 32 YTVQQIANALGV--SERKVRRYLE 53 (55)
T ss_dssp CCHHHHHHHHTS--CHHHHHHHHT
T ss_pred CCHHHHHHHHCc--CHHHHHHHHH
Confidence 499999999997 5666666553
No 57
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=32.44 E-value=55 Score=22.56 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=24.1
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
.+-+.+|+..|.. | ..|.++||+.+|.++ ..|.+.+.
T Consensus 24 ~~~r~~IL~~L~~---~-~~s~~eLa~~lgis~--stvs~~L~ 60 (108)
T 2kko_A 24 NGRRLQILDLLAQ---G-ERAVEAIATATGMNL--TTASANLQ 60 (108)
T ss_dssp TSTTHHHHHHHTT---C-CEEHHHHHHHHTCCH--HHHHHHHH
T ss_pred CHHHHHHHHHHHc---C-CcCHHHHHHHHCcCH--HHHHHHHH
Confidence 3445677777764 4 369999999999743 34444443
No 58
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=32.26 E-value=92 Score=21.67 Aligned_cols=32 Identities=6% Similarity=0.073 Sum_probs=23.9
Q ss_pred ChhHHHHHHHhc------ccCCCcee-CHHHHHHHhCCC
Q psy12847 95 TDFQKLVWSELC------KIPFGSLC-SYADVARNIGRP 126 (188)
Q Consensus 95 t~f~~~V~~~l~------~IP~G~~~-TY~~lA~~~g~p 126 (188)
.+...+|++.|. .+|+|+.. |-.+||+.+|..
T Consensus 8 ~~~~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vS 46 (113)
T 3tqn_A 8 KPIYQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQIN 46 (113)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcC
Confidence 445555664442 57999999 999999999973
No 59
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.78 E-value=55 Score=18.47 Aligned_cols=36 Identities=14% Similarity=-0.010 Sum_probs=23.3
Q ss_pred hHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhC
Q psy12847 97 FQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQN 139 (188)
Q Consensus 97 f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~N 139 (188)
+...+...+. .| .|+.+||+.+|. +...|-..+...
T Consensus 10 ~~~~i~~l~~---~g--~s~~~ia~~lgv--s~~Tv~r~l~~~ 45 (52)
T 1jko_C 10 EQEQISRLLE---KG--HPRQQLAIIFGI--GVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHHH---TT--CCHHHHHHTTSC--CHHHHHHHSCTT
T ss_pred HHHHHHHHHH---cC--CCHHHHHHHHCC--CHHHHHHHHHHc
Confidence 3345555433 35 799999999996 556666655543
No 60
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=30.99 E-value=55 Score=24.62 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=30.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHh-CC--CCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNI-GR--PKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~-g~--p~~~RaVg~a~~ 137 (188)
|+-+.+|+..|.+ -+|++.|+.+||+.+ |. ..+.|.|-..+.
T Consensus 158 t~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~ 202 (230)
T 2oqr_A 158 PLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVK 202 (230)
T ss_dssp CHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 7788888887766 578999999999999 11 124566555443
No 61
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=30.92 E-value=88 Score=22.15 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=25.9
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
+.+.+.+++..|.+ | ..|.++||+.+|.++ -+|.+.+.
T Consensus 44 ~~~~rl~IL~~L~~---~-~~s~~ela~~lgis~--stvs~~L~ 81 (122)
T 1r1t_A 44 ADPNRLRLLSLLAR---S-ELCVGDLAQAIGVSE--SAVSHQLR 81 (122)
T ss_dssp CCHHHHHHHHHHTT---C-CBCHHHHHHHHTCCH--HHHHHHHH
T ss_pred CCHHHHHHHHHHHc---C-CCCHHHHHHHHCcCH--HHHHHHHH
Confidence 45566778888764 3 379999999999743 34444444
No 62
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=30.57 E-value=60 Score=21.03 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.2
Q ss_pred CHHHHHHHhCCCCcHHHHHHHHhhC
Q psy12847 115 SYADVARNIGRPKSARAVANACGQN 139 (188)
Q Consensus 115 TY~~lA~~~g~p~~~RaVg~a~~~N 139 (188)
|..++|+.+|. +.-+|..+++..
T Consensus 15 sq~~~A~~Lgv--sq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGL--SQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSS--CHHHHHHHHHTT
T ss_pred CHHHHHHHhCC--CHHHHHHHHHhc
Confidence 99999999997 778999998764
No 63
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=30.53 E-value=43 Score=21.94 Aligned_cols=39 Identities=5% Similarity=0.056 Sum_probs=26.7
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
+++.+.+|+..|.. ....|.++||+.+|.++ -.|...+.
T Consensus 14 ~~~~~~~iL~~L~~---~~~~~~~ela~~l~is~--~tvs~~l~ 52 (100)
T 1ub9_A 14 GNPVRLGIMIFLLP---RRKAPFSQIQKVLDLTP--GNLDSHIR 52 (100)
T ss_dssp HSHHHHHHHHHHHH---HSEEEHHHHHHHTTCCH--HHHHHHHH
T ss_pred CChHHHHHHHHHHh---cCCcCHHHHHHHHCcCH--HHHHHHHH
Confidence 46777888887754 23589999999999743 34444443
No 64
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=30.19 E-value=58 Score=22.85 Aligned_cols=42 Identities=14% Similarity=0.039 Sum_probs=30.9
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCC--cHHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPK--SARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~N 139 (188)
++-|-.|+..|..-|. +|-++||+.+|.++ ..|.|..-..+.
T Consensus 30 t~~q~~iL~~l~~~~~---~t~~eLa~~l~~~~~tvs~~l~~Le~~G 73 (145)
T 3g3z_A 30 NYNLFAVLYTLATEGS---RTQKHIGEKWSLPKQTVSGVCKTLAGQG 73 (145)
T ss_dssp CHHHHHHHHHHHHHCS---BCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6777788888876653 99999999999754 346666555555
No 65
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.67 E-value=35 Score=20.59 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=15.4
Q ss_pred eeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847 113 LCSYADVARNIGRPKSARAVANAC 136 (188)
Q Consensus 113 ~~TY~~lA~~~g~p~~~RaVg~a~ 136 (188)
-.|+.|||+.+|. +.+.|-+.+
T Consensus 13 g~s~~eIA~~l~i--s~~tV~~~~ 34 (61)
T 2jpc_A 13 GYTNHGISEKLHI--SIKTVETHR 34 (61)
T ss_dssp SCCSHHHHHHTCS--CHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CHHHHHHHH
Confidence 3588999999997 455555444
No 66
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=29.64 E-value=1e+02 Score=21.98 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=23.3
Q ss_pred ChhHHHHHHHh----c--ccCCCcee-CHHHHHHHhCCC
Q psy12847 95 TDFQKLVWSEL----C--KIPFGSLC-SYADVARNIGRP 126 (188)
Q Consensus 95 t~f~~~V~~~l----~--~IP~G~~~-TY~~lA~~~g~p 126 (188)
.+...+|++.| . .+|+|+.. |-.+||+.+|..
T Consensus 10 ~~~~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vS 48 (126)
T 3by6_A 10 RPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKIN 48 (126)
T ss_dssp CCHHHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcC
Confidence 34455555433 2 47999999 999999999973
No 67
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=29.26 E-value=84 Score=24.31 Aligned_cols=38 Identities=8% Similarity=0.133 Sum_probs=27.0
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
.++.+.+++..|.. | ..|.++||+.+|.+ ..+|.+.+.
T Consensus 18 ~d~~~~~IL~~L~~---~-~~s~~eLA~~lglS--~stv~~~l~ 55 (192)
T 1uly_A 18 LEDTRRKILKLLRN---K-EMTISQLSEILGKT--PQTIYHHIE 55 (192)
T ss_dssp HSHHHHHHHHHHTT---C-CBCHHHHHHHHTCC--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHc---C-CCCHHHHHHHHCcC--HHHHHHHHH
Confidence 35677889988873 5 48999999999974 334444433
No 68
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=29.17 E-value=72 Score=22.02 Aligned_cols=42 Identities=14% Similarity=0.266 Sum_probs=28.3
Q ss_pred cccCCChhHHHHHHHhcccCCCceeCHHHHHHHh-CCCCcHHHHHHHHh
Q psy12847 90 FKIEGTDFQKLVWSELCKIPFGSLCSYADVARNI-GRPKSARAVANACG 137 (188)
Q Consensus 90 l~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~-g~p~~~RaVg~a~~ 137 (188)
+...+.+++..|+..|.. | ..|+++||+.+ |. +...|...+.
T Consensus 16 l~~l~~~~~~~IL~~L~~---~-~~~~~eLa~~l~~i--s~~tvs~~L~ 58 (112)
T 1z7u_A 16 LSTINGKWKLSLMDELFQ---G-TKRNGELMRALDGI--TQRVLTDRLR 58 (112)
T ss_dssp HHTTCSTTHHHHHHHHHH---S-CBCHHHHHHHSTTC--CHHHHHHHHH
T ss_pred HHHHcCccHHHHHHHHHh---C-CCCHHHHHHHhccC--CHHHHHHHHH
Confidence 445567777778877763 4 47999999999 86 3334444443
No 69
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=28.62 E-value=33 Score=23.33 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=20.4
Q ss_pred HHhcccCCCceeCHHHHHHHhCCCCcH
Q psy12847 103 SELCKIPFGSLCSYADVARNIGRPKSA 129 (188)
Q Consensus 103 ~~l~~IP~G~~~TY~~lA~~~g~p~~~ 129 (188)
+.+.+|..|. |-.||...+|.|...
T Consensus 8 ~~~~~i~~Gm--Tk~qV~~lLG~P~~~ 32 (88)
T 2yh9_A 8 NDVSKIRVGM--TQQQVAYALGTPLMS 32 (88)
T ss_dssp --CTTCCTTC--BHHHHHHHHCSCSEE
T ss_pred HHHHhccCCC--CHHHHHHHcCCCccc
Confidence 4578999998 999999999999653
No 70
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=28.53 E-value=78 Score=20.65 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=28.6
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-+.+|+..|..= ...|..+||+.+|.+++ .|.+..-....
T Consensus 19 ~~~~~~il~~l~~~---~~~s~~ela~~l~is~~tv~~~l~~L~~~g 62 (109)
T 1sfx_A 19 KPSDVRIYSLLLER---GGMRVSEIARELDLSARFVRDRLKVLLKRG 62 (109)
T ss_dssp CHHHHHHHHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHc---CCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 67788888888652 23899999999997532 35554444443
No 71
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=28.36 E-value=90 Score=20.70 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=30.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhC---CCCcHHHHHHHHhh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIG---RPKSARAVANACGQ 138 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g---~p~~~RaVg~a~~~ 138 (188)
|+-+.+++..|.. -+|+++|..+|.+.+- .+.+.++|-..+.+
T Consensus 24 t~~E~~lL~~L~~-~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~r 69 (96)
T 3rjp_A 24 TKREYDLLNILMT-NMNRVMTREELLSNVWKYDEAVETNVVDVYIRY 69 (96)
T ss_dssp CHHHHHHHHHHHH-TTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-CCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHH
Confidence 5566678887776 4599999999999982 23345666655543
No 72
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=28.28 E-value=59 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=20.1
Q ss_pred eCHHHHHHHhCCCCcHHHHHHHHhhCC
Q psy12847 114 CSYADVARNIGRPKSARAVANACGQNN 140 (188)
Q Consensus 114 ~TY~~lA~~~g~p~~~RaVg~a~~~Np 140 (188)
+|-.|||+.+|. +.-.|..++...+
T Consensus 1 ~T~~diA~~aGV--S~sTVSrvLng~~ 25 (65)
T 1uxc_A 1 MKLDEIARLAGV--SRTTASYVINGKA 25 (65)
T ss_dssp CCHHHHHHHHTS--CHHHHHHHHHTCT
T ss_pred CCHHHHHHHHCc--CHHHHHHHHcCCC
Confidence 367899999997 6788998887554
No 73
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=27.91 E-value=81 Score=20.37 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=19.6
Q ss_pred HHHHHHHhcccCCCceeCHHHHHHHhCCCC
Q psy12847 98 QKLVWSELCKIPFGSLCSYADVARNIGRPK 127 (188)
Q Consensus 98 ~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~ 127 (188)
+++|++.|..= | ..|..|||+.+|.+.
T Consensus 2 r~~Il~~L~~~--~-~~s~~eLa~~lgvs~ 28 (81)
T 2htj_A 2 KNEILEFLNRH--N-GGKTAEIAEALAVTD 28 (81)
T ss_dssp HHHHHHHHHHS--C-CCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHc--C-CCCHHHHHHHHCcCH
Confidence 45677777542 3 389999999999754
No 74
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=27.90 E-value=1.2e+02 Score=21.49 Aligned_cols=31 Identities=3% Similarity=-0.123 Sum_probs=24.0
Q ss_pred ChhHHHHHHHhc------ccCCCcee-CHHHHHHHhCC
Q psy12847 95 TDFQKLVWSELC------KIPFGSLC-SYADVARNIGR 125 (188)
Q Consensus 95 t~f~~~V~~~l~------~IP~G~~~-TY~~lA~~~g~ 125 (188)
.+...+|++.|. .+|+|+.. |-.+||+.+|.
T Consensus 12 ~~~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~v 49 (125)
T 3neu_A 12 KPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAV 49 (125)
T ss_dssp SCHHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCc
Confidence 566667765543 56899888 79999999997
No 75
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=27.59 E-value=65 Score=24.07 Aligned_cols=30 Identities=7% Similarity=-0.078 Sum_probs=25.3
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhC
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIG 124 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g 124 (188)
-|+-+.+|++.|.+= +|++.|..+||+.++
T Consensus 146 Lt~rE~~vl~~l~~~-~~~~~s~~~Ia~~l~ 175 (220)
T 1p2f_A 146 LPKKEFEILLFLAEN-AGKVVTREKLLETFW 175 (220)
T ss_dssp CCHHHHHHHHHHHHT-TTSCEEHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHC-CCceEcHHHHHHHHh
Confidence 378888898877664 499999999999997
No 76
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=27.52 E-value=99 Score=20.74 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=29.5
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHh-C--CCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNI-G--RPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~-g--~p~~~RaVg~a~~ 137 (188)
|+-+.+++..|..= .|+++|..+|.+.+ | .+...++|-..+.
T Consensus 30 t~~e~~lL~~L~~~-~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~ 74 (102)
T 3zq7_A 30 TPIEFRLLAVLLNN-AGKVLTQRQLLNQVWGPNAVEHSHYLRIYMG 74 (102)
T ss_dssp CHHHHHHHHHHHHT-TTCEEEHHHHHHHHTSSSCSTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC-CCeeECHHHHHHHhcCCCCCCccchHHHHHH
Confidence 45555688777654 59999999999998 2 2345666665554
No 77
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=26.96 E-value=81 Score=23.79 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=18.3
Q ss_pred CCceeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847 110 FGSLCSYADVARNIGRPKSARAVANAC 136 (188)
Q Consensus 110 ~G~~~TY~~lA~~~g~p~~~RaVg~a~ 136 (188)
|.+-.||.|||+.+|. +..+|.+.+
T Consensus 200 ~~~g~s~~EIA~~lgi--s~~~V~~~~ 224 (239)
T 1rp3_A 200 FYEELPAKEVAKILET--SVSRVSQLK 224 (239)
T ss_dssp HTSCCCHHHHHHHTTS--CHHHHHHHH
T ss_pred HhcCCCHHHHHHHhCC--CHHHHHHHH
Confidence 3667899999999997 445555443
No 78
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=26.42 E-value=94 Score=21.39 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=30.6
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-|..|+..|..-| |+.+|.++||+.+|..++ .|.|..-..+.
T Consensus 33 t~~~~~iL~~l~~~~-~~~~~~~ela~~l~~~~~tvs~~l~~Le~~G 78 (141)
T 3bro_A 33 TGTQMTIIDYLSRNK-NKEVLQRDLESEFSIKSSTATVLLQRMEIKK 78 (141)
T ss_dssp CHHHHHHHHHHHHTT-TSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCC-CCCcCHHHHHHHHCCCcchHHHHHHHHHHCC
Confidence 667778888887754 346899999999997533 35555544444
No 79
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=26.23 E-value=90 Score=21.41 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=27.3
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~ 137 (188)
+++-|.+++..|.+ | ..|.++||+.+|.+++ .|.+..--.
T Consensus 30 ~~~~~~~il~~L~~---~-~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 30 ATPSRLMILTQLRN---G-PLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCHHHHHHHHHHHH---C-CCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---C-CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34667788888876 2 4799999999997543 355544444
No 80
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=25.96 E-value=92 Score=21.13 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=26.0
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
+.+.+.+++..|.. |. .|.++||+.+|.++ ..|.+.+.
T Consensus 24 ~~~~r~~IL~~L~~---~~-~~~~ela~~l~is~--stvs~~L~ 61 (106)
T 1r1u_A 24 GDYNRIRIMELLSV---SE-ASVGHISHQLNLSQ--SNVSHQLK 61 (106)
T ss_dssp CSHHHHHHHHHHHH---CC-BCHHHHHHHHTCCH--HHHHHHHH
T ss_pred CCHHHHHHHHHHHh---CC-CCHHHHHHHHCcCH--HHHHHHHH
Confidence 56677788887762 33 69999999999753 34444443
No 81
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=25.93 E-value=67 Score=22.01 Aligned_cols=38 Identities=5% Similarity=-0.090 Sum_probs=27.8
Q ss_pred HHHHHhcccCCCceeCHHHHHHHhCCC-CcHHHHHHHHhhC
Q psy12847 100 LVWSELCKIPFGSLCSYADVARNIGRP-KSARAVANACGQN 139 (188)
Q Consensus 100 ~V~~~l~~IP~G~~~TY~~lA~~~g~p-~~~RaVg~a~~~N 139 (188)
-|++.|..|..| ++-++||..+|.. ...|..-..|..+
T Consensus 9 Ii~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~ 47 (95)
T 1r7j_A 9 IIQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDL 47 (95)
T ss_dssp HHHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHC
Confidence 378888888888 8999999999973 2345555555555
No 82
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=25.82 E-value=34 Score=25.76 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=24.8
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIG 124 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g 124 (188)
|+-+.+|+..|.+=| |++.|..+||+.++
T Consensus 145 t~rE~~vL~~l~~~~-~~~~s~~~Ia~~l~ 173 (223)
T 2hqr_A 145 KGKPFEVLTHLARHR-DQIVSKEQLLDAIW 173 (223)
T ss_dssp CSTTTHHHHHHHHTC-SEEEEHHHHHHHHC
T ss_pred CHHHHHHHHHHHhCC-CCcCCHHHHHHHhc
Confidence 677778988887655 99999999999996
No 83
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.81 E-value=66 Score=21.51 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=26.6
Q ss_pred hHHHHHHHhcc-cCC--CceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 97 FQKLVWSELCK-IPF--GSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 97 f~~~V~~~l~~-IP~--G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
-+++|++.|.+ |-. |...|..|||+.+|. +.-+|-.-|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv--S~~TVrr~L~ 46 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGL--SIYQVRLYLE 46 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCC--CHHHHHHHHH
Confidence 45678887765 222 677999999999997 4444544443
No 84
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=25.00 E-value=1.2e+02 Score=20.54 Aligned_cols=42 Identities=10% Similarity=-0.028 Sum_probs=29.5
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHh-CC--CCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNI-GR--PKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~-g~--p~~~RaVg~a~~ 137 (188)
|+-+.+++..|..= .|+++|..+|.+.+ |. +.+.++|-..+.
T Consensus 33 t~~E~~lL~~L~~~-~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~ 77 (106)
T 1gxq_A 33 GPTEFKLLHFFMTH-PERVYSREQLLNHVWGTNVYVEDRTVDVHIR 77 (106)
T ss_dssp CHHHHHHHHHHHHS-CSSEECHHHHHHHHTCSSSCCCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHC-CCeeEcHHHHHHHHcCCCCCCCcccHHHHHH
Confidence 56666788877654 49999999999998 32 234566655543
No 85
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=24.68 E-value=1.6e+02 Score=21.04 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCCCCCcccccccCC-ChhHHHHHHHhcccC--CCceeCHHHHHHHhCCCC--cHHHHHHHHhhC
Q psy12847 67 SRDIIDRLEAYIVNPKQNCLDIKFKIEG-TDFQKLVWSELCKIP--FGSLCSYADVARNIGRPK--SARAVANACGQN 139 (188)
Q Consensus 67 l~~~~~qL~~YF~G~~~~~F~lpl~~~g-t~f~~~V~~~l~~IP--~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~N 139 (188)
+..+...+..+|+... ...| |+-|-.|+..|..-| .+..+|-++||+.+|..+ ..|.|..-..+.
T Consensus 11 l~ra~r~~~~~~~~~l--------~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~g 80 (148)
T 4fx0_A 11 TRRAARQLGQAYDRAL--------RPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDG 80 (148)
T ss_dssp HHHHHHHHHHHHHHHH--------GGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCC
Confidence 3445555655554322 2223 667777888887654 467899999999999743 357776665554
No 86
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=24.56 E-value=73 Score=22.27 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.9
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
+.+.+.+++..|.. |. .|.++||+.+|. +...|.+.+..
T Consensus 19 ~~~~r~~IL~~L~~---~~-~~~~eLa~~lgi--s~stvs~~L~~ 57 (118)
T 2jsc_A 19 ADPTRCRILVALLD---GV-CYPGQLAAHLGL--TRSNVSNHLSC 57 (118)
T ss_dssp SSHHHHHHHHHHHT---TC-CSTTTHHHHHSS--CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc---CC-CCHHHHHHHHCc--CHHHHHHHHHH
Confidence 56778888888763 43 688999999997 45566666665
No 87
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=24.55 E-value=1.5e+02 Score=20.83 Aligned_cols=42 Identities=14% Similarity=-0.014 Sum_probs=28.2
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCC--cHHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPK--SARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~N 139 (188)
++-|..|+..|.. ....|-++||+.+|..+ ..|.|..-..+.
T Consensus 46 ~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g 89 (153)
T 2pex_A 46 TYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRLQAAG 89 (153)
T ss_dssp CHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHHHHCC
Confidence 6667778777765 23489999999999743 235555544444
No 88
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=24.42 E-value=1.8e+02 Score=20.07 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=29.2
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-|..|+..|..= . .|-++||+.+|.+++ .|.|..-..+.
T Consensus 37 t~~~~~iL~~l~~~---~-~t~~eLa~~l~~s~~tvs~~l~~L~~~G 79 (146)
T 3tgn_A 37 TNTQEHILMLLSEE---S-LTNSELARRLNVSQAAVTKAIKSLVKEG 79 (146)
T ss_dssp CHHHHHHHHHHTTC---C-CCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhC---C-CCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 78888888877653 3 999999999998543 35555555444
No 89
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.04 E-value=61 Score=22.85 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=23.6
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++-++.|+... |-+-.||.+||+.+|. +..+|-+.+.
T Consensus 27 ~~~~r~vl~l~----~~~g~s~~EIA~~lgi--S~~tV~~~l~ 63 (113)
T 1xsv_A 27 TNKQRNYLELF----YLEDYSLSEIADTFNV--SRQAVYDNIR 63 (113)
T ss_dssp CHHHHHHHHHH----HTSCCCHHHHHHHTTC--CHHHHHHHHH
T ss_pred CHHHHHHHHHH----HHcCCCHHHHHHHHCc--CHHHHHHHHH
Confidence 55667766543 1234699999999997 4445544443
No 90
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=23.92 E-value=1e+02 Score=21.72 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=31.8
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++.|.+|+..|.+-|. ...|-.+||+.+|.+++ .|++..-....
T Consensus 25 t~~e~~il~~L~~~~~-~~~t~~eLa~~l~~s~sTV~r~L~~L~~~G 70 (123)
T 3r0a_A 25 TKADLNVMKSFLNEPD-RWIDTDALSKSLKLDVSTVQRSVKKLHEKE 70 (123)
T ss_dssp CHHHHHHHHHHHHSTT-CCEEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 7889999999986532 23899999999997543 46665555544
No 91
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=23.76 E-value=37 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=22.9
Q ss_pred HHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 101 VWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 101 V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
+=+.|.+.-.=+-.|+.+||+.+|. +...|+.||.
T Consensus 14 ~~~~I~~AK~~KGLTwe~IAe~iG~--S~v~vtaa~l 48 (156)
T 1dw9_A 14 LADAILLSKAKKDLSFAEIADGTGL--AEAFVTAALL 48 (156)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTSSS--CHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCc--CHHHHHHHHc
Confidence 4445555555566799999999996 4555555543
No 92
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=23.67 E-value=90 Score=23.74 Aligned_cols=29 Identities=7% Similarity=-0.018 Sum_probs=24.4
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNI 123 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~ 123 (188)
-|+-+.+|+..+.+ -+|++.|..+||+.+
T Consensus 154 LT~rE~~vL~~l~~-~~~~~~s~~eIa~~l 182 (238)
T 2gwr_A 154 LTPLEFDLLVALAR-KPRQVFTRDVLLEQV 182 (238)
T ss_dssp CCHHHHHHHHHHHH-STTCCBCHHHHHHHH
T ss_pred cCHHHHHHHHHHHH-CCCceecHHHHHHHH
Confidence 47888889887765 458999999999999
No 93
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=23.56 E-value=1.5e+02 Score=20.51 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=34.7
Q ss_pred hhHHHHHHHhcccCCCceeCHHHHHHHhCCC------CcHHHHHHHHhhC
Q psy12847 96 DFQKLVWSELCKIPFGSLCSYADVARNIGRP------KSARAVANACGQN 139 (188)
Q Consensus 96 ~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p------~~~RaVg~a~~~N 139 (188)
.....++..|.+=.+|+|+.=+|+|+.++-. ..+|+++..|...
T Consensus 7 ~le~~Il~ll~~R~~~kTicPSEvARal~~~~Wr~lM~~vR~~A~~La~~ 56 (85)
T 2ns0_A 7 ELEECIRALLDARADSASICPSDVARAVAPDDWRPLMEPVREAAGRLADA 56 (85)
T ss_dssp HHHHHHHHHHHHSCTTCCBCHHHHHHHHCTTSCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCcCHHHHHHHhCchhHHHHhHHHHHHHHHHHHC
Confidence 3456788888888999999999999999732 2567887777765
No 94
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=23.38 E-value=80 Score=22.21 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=26.8
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
+.+.+.+++..|.. .| ..|.++||+.+|.++ .+|.+.+..
T Consensus 40 ~~~~rl~IL~~L~~--~~-~~s~~eLa~~l~is~--stvs~~L~~ 79 (122)
T 1u2w_A 40 ADENRAKITYALCQ--DE-ELCVCDIANILGVTI--ANASHHLRT 79 (122)
T ss_dssp HSHHHHHHHHHHHH--SS-CEEHHHHHHHHTCCH--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CC-CcCHHHHHHHHCcCH--HHHHHHHHH
Confidence 45667778887764 23 479999999999743 344444443
No 95
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.30 E-value=1.9e+02 Score=19.96 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=27.0
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-|-.|+..|.. . +...|.++||+.+|..++ .|.|..-..+.
T Consensus 34 ~~~~~~iL~~l~~-~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g 78 (147)
T 2hr3_A 34 QFSQLVVLGAIDR-L-GGDVTPSELAAAERMRSSNLAALLRELERGG 78 (147)
T ss_dssp HHHHHHHHHHHHH-T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH-c-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCC
Confidence 4555666666654 1 345899999999997432 35555444443
No 96
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=23.09 E-value=58 Score=25.62 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=30.0
Q ss_pred ChhHHHHHHHhcccC-CCceeCHHHHHHHhCCCC--cHHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIP-FGSLCSYADVARNIGRPK--SARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP-~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~N 139 (188)
|+-|..+|..|..+- .|.+.+.++||+.+|..+ ..|++..-..+.
T Consensus 5 t~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~G 52 (230)
T 1fx7_A 5 VDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDG 52 (230)
T ss_dssp SSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 677888888887653 366667799999999733 234444444433
No 97
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=22.81 E-value=1.5e+02 Score=20.56 Aligned_cols=42 Identities=17% Similarity=-0.021 Sum_probs=29.3
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
++-|-.|+..|..- ..+|-++||+.+|.+++ .|.|..-..+.
T Consensus 36 t~~~~~iL~~l~~~---~~~t~~eLa~~l~~~~~~vs~~l~~L~~~G 79 (143)
T 3oop_A 36 TPEQWSVLEGIEAN---EPISQKEIALWTKKDTPTVNRIVDVLLRKE 79 (143)
T ss_dssp CHHHHHHHHHHHHH---SSEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHc---CCcCHHHHHHHHCCCHhhHHHHHHHHHHCC
Confidence 67777788777654 35789999999997543 35555555554
No 98
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=22.74 E-value=1.1e+02 Score=21.15 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=18.2
Q ss_pred hcccCCCcee-CHHHHHHHhCC
Q psy12847 105 LCKIPFGSLC-SYADVARNIGR 125 (188)
Q Consensus 105 l~~IP~G~~~-TY~~lA~~~g~ 125 (188)
+..+++|... |-.+||+.+|.
T Consensus 34 ~~~l~~g~~lps~~eLa~~lgV 55 (102)
T 2b0l_A 34 FEELDGNEGLLVASKIADRVGI 55 (102)
T ss_dssp TTSSBTTEEEECHHHHHHHHTC
T ss_pred HhhhcCCCcCCCHHHHHHHHCc
Confidence 3667889887 99999999997
No 99
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.37 E-value=69 Score=22.69 Aligned_cols=37 Identities=24% Similarity=0.149 Sum_probs=23.5
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
++-|++|+.... -+-.||.+||+.+|.+ ..+|-+.+.
T Consensus 24 ~~~~r~vl~l~y----~~g~s~~EIA~~lgiS--~~tV~~~l~ 60 (113)
T 1s7o_A 24 TDKQMNYIELYY----ADDYSLAEIADEFGVS--RQAVYDNIK 60 (113)
T ss_dssp CHHHHHHHHHHH----HTCCCHHHHHHHHTCC--HHHHHHHHH
T ss_pred CHHHHHHHHHHH----HcCCCHHHHHHHHCcC--HHHHHHHHH
Confidence 566777765431 1337899999999974 444444443
No 100
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.25 E-value=85 Score=22.76 Aligned_cols=36 Identities=17% Similarity=-0.001 Sum_probs=21.9
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHH
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANAC 136 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~ 136 (188)
++-+++|+. .-+-+-.||.|||+.+|.+ ..+|-+.+
T Consensus 95 p~~~r~vl~----L~~~~g~s~~EIA~~lgis--~~tV~~~l 130 (157)
T 2lfw_A 95 TPLSRQALL----LTAMEGFSPEDAAYLIEVD--TSEVETLV 130 (157)
T ss_dssp CTTHHHHHT----TTSSSCCCHHHHHHTTTSC--HHHHHHHH
T ss_pred CHHHHHHHH----HHHHcCCCHHHHHHHHCcC--HHHHHHHH
Confidence 445555432 2234567999999999985 44444333
No 101
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=22.13 E-value=1.4e+02 Score=20.81 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=29.6
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHh-CC--CCcHHHHHHHHh
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNI-GR--PKSARAVANACG 137 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~-g~--p~~~RaVg~a~~ 137 (188)
|+-+.+++..|..= +|+++|+.+|.+.+ |. +.+.|+|-..+.
T Consensus 43 t~~E~~LL~~L~~~-~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~ 87 (115)
T 2k4j_A 43 TRAEYEILSLLISK-KGYVFSRESIAIESESINPESSNKSIDVIIG 87 (115)
T ss_dssp CHHHHHHHHHHHHH-CCCEECHHHHHHHTCCSSCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CCcEEcHHHHHHHHcCCCCCCchhHHHHHHH
Confidence 56666788777653 49999999999998 32 235666665544
No 102
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.09 E-value=65 Score=23.65 Aligned_cols=26 Identities=15% Similarity=-0.018 Sum_probs=18.7
Q ss_pred CCceeCHHHHHHHhCCCCcHHHHHHHHh
Q psy12847 110 FGSLCSYADVARNIGRPKSARAVANACG 137 (188)
Q Consensus 110 ~G~~~TY~~lA~~~g~p~~~RaVg~a~~ 137 (188)
|-+-.||.|||+.+|. +..+|-+.+.
T Consensus 153 ~~~g~s~~EIA~~lgi--s~~tV~~~l~ 178 (194)
T 1or7_A 153 ELDGLSYEEIAAIMDC--PVGTVRSRIF 178 (194)
T ss_dssp HTTCCCHHHHHHHTTS--CHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCC--CHHHHHHHHH
Confidence 3456899999999997 4556655443
No 103
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=22.00 E-value=1.2e+02 Score=21.14 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=28.6
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCC--cHHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPK--SARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~N 139 (188)
++-|..|+..|..- ...|.++||+.+|.++ ..|.|..-..+.
T Consensus 41 ~~~~~~iL~~l~~~---~~~t~~ela~~l~~~~~tvs~~l~~Le~~G 84 (150)
T 2rdp_A 41 TPPQFVALQWLLEE---GDLTVGELSNKMYLACSTTTDLVDRMERNG 84 (150)
T ss_dssp CHHHHHHHHHHHHH---CSBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHc---CCCCHHHHHHHHCCCchhHHHHHHHHHHCC
Confidence 66677787777653 2589999999999743 235555555544
No 104
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=21.97 E-value=1e+02 Score=21.38 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=30.0
Q ss_pred ccCCChhHHHHHHHhcccCCCce-eCHHHHHHHh-CCCCcHHHHHHHHhh
Q psy12847 91 KIEGTDFQKLVWSELCKIPFGSL-CSYADVARNI-GRPKSARAVANACGQ 138 (188)
Q Consensus 91 ~~~gt~f~~~V~~~l~~IP~G~~-~TY~~lA~~~-g~p~~~RaVg~a~~~ 138 (188)
+.-|.+....|+..|. .|.. .|+++||+.+ |. +..++.+.+..
T Consensus 22 ~~l~~~wrl~IL~~L~---~g~~~~~~~eL~~~l~gi--s~~~ls~~L~~ 66 (111)
T 3df8_A 22 HLLGKKYTMLIISVLG---NGSTRQNFNDIRSSIPGI--SSTILSRRIKD 66 (111)
T ss_dssp HHHHSTTHHHHHHHHT---SSSSCBCHHHHHHTSTTC--CHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHh---cCCCCCCHHHHHHHccCC--CHHHHHHHHHH
Confidence 3345677777777775 4554 5699999999 76 56666666665
No 105
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=21.89 E-value=38 Score=22.84 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=30.4
Q ss_pred HHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCC
Q psy12847 98 QKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNN 140 (188)
Q Consensus 98 ~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np 140 (188)
+.+++.++..|--|+ +|..+.|+..|.|.+ ..--.+.+.++
T Consensus 16 e~~L~~Ai~aVr~g~-mS~~~Aak~yGVP~s-TL~~RVk~~~~ 56 (70)
T 2cob_A 16 SEILEEAISVVMSGK-MSVSKAQSIYGIPHS-TLEYKVKERLG 56 (70)
T ss_dssp HHHHHHHHHHHHTTS-SCHHHHHHHHTCCHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC-ccHHHHHHHhCCChH-HHHHHHHhhcc
Confidence 456888999998899 999999999999853 33333444443
No 106
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=21.25 E-value=2.1e+02 Score=19.77 Aligned_cols=64 Identities=16% Similarity=0.106 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCCCCcccccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCc--HHHHHHHHhhC
Q psy12847 67 SRDIIDRLEAYIVNPKQNCLDIKFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKS--ARAVANACGQN 139 (188)
Q Consensus 67 l~~~~~qL~~YF~G~~~~~F~lpl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~--~RaVg~a~~~N 139 (188)
+..+...+..+++..... + ..-++-|-.|+..|..-| ..|-++||+.+|..++ .|.|..-..+.
T Consensus 17 l~~~~~~~~~~~~~~~~~----~--~~l~~~~~~iL~~l~~~~---~~t~~ela~~l~~~~~tvs~~l~~Le~~G 82 (148)
T 3nrv_A 17 INMLANKLMLKSSTAYTQ----K--FGIGMTEWRIISVLSSAS---DCSVQKISDILGLDKAAVSRTVKKLEEKK 82 (148)
T ss_dssp HHHHHHHHHHC----CCG----G--GTCCHHHHHHHHHHHHSS---SBCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH----h--cCCCHHHHHHHHHHHcCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 344555555555443221 1 123667777888777654 7899999999997543 35555555543
No 107
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=21.03 E-value=1.1e+02 Score=22.40 Aligned_cols=44 Identities=14% Similarity=0.328 Sum_probs=30.1
Q ss_pred ccccCCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 89 KFKIEGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 89 pl~~~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
.++..|.++...|+..|. .| ..++++||+.+|. +..+|...+..
T Consensus 17 ~l~~l~~~w~l~IL~~L~---~g-~~~~~eLa~~lgi--s~~tls~~L~~ 60 (146)
T 2f2e_A 17 PLDVIGDGWSMLIVRDAF---EG-LTRFGEFQKSLGL--AKNILAARLRN 60 (146)
T ss_dssp THHHHCSSSHHHHHHHHH---TT-CCSHHHHHHHHCC--CHHHHHHHHHH
T ss_pred HHHHhCCchHHHHHHHHH---hC-CCCHHHHHHHhCC--CHHHHHHHHHH
Confidence 355557777777777764 35 5899999999987 44455555554
No 108
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme, oxidoreductase, monooxygenase, sterol biosynthesis, lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A {Trypanosoma brucei} PDB: 3tik_A* 3g1q_A* 3p99_A* 2wv2_A* 2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Probab=20.99 E-value=79 Score=26.17 Aligned_cols=61 Identities=15% Similarity=0.288 Sum_probs=42.7
Q ss_pred CChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhhCCCCCCCCceeeeCCCCCcCCC
Q psy12847 94 GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGSYGGY 160 (188)
Q Consensus 94 gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~Np~~~~iPcHRVv~~~G~l~gy 160 (188)
-...|+++.+++.++ +...||.++-..+ |---..|--+++..|....+| |++..+-.++||
T Consensus 285 ~p~~~~~l~~Ei~~~--~~~~~~~~~~~~l--pyl~a~i~E~lRl~p~~~~~~--R~~~~d~~~~g~ 345 (450)
T 3gw9_A 285 NVKHLEALRKEIEEF--PAQLNYNNVMDEM--PFAERCARESIRRDPPLLMLM--RKVMADVKVGSY 345 (450)
T ss_dssp GHHHHHHHHHHHTTC--CSSCCHHHHHHHC--HHHHHHHHHHHHHSCSCCCEE--EEECSCEEETTE
T ss_pred chhHHHHHHHHHHhc--cCCCChHHHHHhc--HHHHHHHHHHHHhCCchhccc--cccccccccCCE
Confidence 356788999999988 6778999983333 333456677888888655555 555667677776
No 109
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=20.91 E-value=1.1e+02 Score=24.04 Aligned_cols=39 Identities=10% Similarity=-0.043 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHhcccCCCceeCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 93 EGTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 93 ~gt~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
.-|+-+++|+..+. +-.|+.|||+.+|. +.+.|-+.+.+
T Consensus 175 ~Lt~re~~vl~~~~-----~G~s~~eIa~~l~i--s~~tV~~~~~~ 213 (237)
T 3szt_A 175 RLTARETEMLKWTA-----VGKTYGEIGLILSI--DQRTVKFHIVN 213 (237)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTS--CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCC--CHHHHHHHHHH
Confidence 34889999988763 34789999999997 66766665543
No 110
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=20.71 E-value=1.3e+02 Score=20.63 Aligned_cols=44 Identities=16% Similarity=0.071 Sum_probs=30.8
Q ss_pred ChhHHHHHHHhcccCCCceeCHHHHHHHhCCCC--cHHHHHHHHhhC
Q psy12847 95 TDFQKLVWSELCKIPFGSLCSYADVARNIGRPK--SARAVANACGQN 139 (188)
Q Consensus 95 t~f~~~V~~~l~~IP~G~~~TY~~lA~~~g~p~--~~RaVg~a~~~N 139 (188)
|+-|-.|+..|..-|. ...|-++||+.+|..+ ..|.|..-..+.
T Consensus 30 t~~~~~vL~~l~~~~~-~~~t~~ela~~l~~~~~tvs~~l~~Le~~G 75 (139)
T 3eco_A 30 TNEQGHTLGYLYAHQQ-DGLTQNDIAKALQRTGPTVSNLLRNLERKK 75 (139)
T ss_dssp CHHHHHHHHHHHHSTT-TCEEHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCC-CCcCHHHHHHHhCCCcccHHHHHHHHHHCC
Confidence 6777788888877652 4678999999999743 335555555544
No 111
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=20.40 E-value=59 Score=21.00 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=19.8
Q ss_pred ceeCHHHHHHHhCCCCcHHHHHHHHhhC
Q psy12847 112 SLCSYADVARNIGRPKSARAVANACGQN 139 (188)
Q Consensus 112 ~~~TY~~lA~~~g~p~~~RaVg~a~~~N 139 (188)
...|-.|||+.+|. +...|..++...
T Consensus 8 ~~~t~~diA~~aGV--S~sTVSr~ln~~ 33 (67)
T 2l8n_A 8 TAATMKDVALKAKV--STATVSRALMNP 33 (67)
T ss_dssp -CCCHHHHHHHTTC--CHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHCC--CHHHHHHHHcCC
Confidence 34689999999997 677888777543
No 112
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=20.03 E-value=1.5e+02 Score=21.11 Aligned_cols=42 Identities=14% Similarity=0.102 Sum_probs=28.2
Q ss_pred ChhHHHHHHHhcc-cCCCce-eCHHHHHHHhCCCCcHHHHHHHHhh
Q psy12847 95 TDFQKLVWSELCK-IPFGSL-CSYADVARNIGRPKSARAVANACGQ 138 (188)
Q Consensus 95 t~f~~~V~~~l~~-IP~G~~-~TY~~lA~~~g~p~~~RaVg~a~~~ 138 (188)
++-+-.||-.|.. ...|.. .|.++||+.+|. +...|-+++..
T Consensus 31 t~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~--s~~~V~~~l~~ 74 (128)
T 2vn2_A 31 GEGELVLLLHMQSFFEEGVLFPTPAELAERMTV--SAAECMEMVRR 74 (128)
T ss_dssp CHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSS--CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCc--CHHHHHHHHHH
Confidence 5666668776654 223332 799999999997 56666666654
Done!