RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12847
         (188 letters)



>d1sfea1 a.4.2.1 (A:93-176) Ada DNA repair protein {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score =  105 bits (263), Expect = 8e-31
 Identities = 41/83 (49%), Positives = 52/83 (62%)

Query: 94  GTDFQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRS 153
           GT FQ+ VW  L  IP G   SY  +A  IG+PK+ RAVA+AC  N + I+IPCHRV+R 
Sbjct: 1   GTAFQQQVWQALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRG 60

Query: 154 DGSYGGYSSGKYIKETLIKIEQK 176
           DGS  GY  G   K  L++ E +
Sbjct: 61  DGSLSGYRWGVSRKAQLLRREAE 83


>d1qnta1 a.4.2.1 (A:92-176) O6-alkylguanine-DNA alkyltransferase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 91.5 bits (227), Expect = 3e-25
 Identities = 35/78 (44%), Positives = 48/78 (61%)

Query: 97  FQKLVWSELCKIPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRSDGS 156
            ++++W  L  + FG + SY  +A   G PK+ARAV  A   N +PILIPCHRV+ S G+
Sbjct: 4   TRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGA 63

Query: 157 YGGYSSGKYIKETLIKIE 174
            G YS G  +KE L+  E
Sbjct: 64  VGNYSGGLAVKEWLLAHE 81


>d1mgta1 a.4.2.1 (A:89-169) O6-alkylguanine-DNA alkyltransferase
           {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
          Length = 81

 Score = 81.9 bits (202), Expect = 1e-21
 Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)

Query: 95  TDFQKLVWSELCK-IPFGSLCSYADVARNIGRPKSARAVANACGQNNIPILIPCHRVIRS 153
           T F+K V+  L K +  GS+ +Y D+A+ +      RAV  A  +N  PI++PCHRV+  
Sbjct: 2   TPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSP--RAVGGAMKRNPYPIVVPCHRVVAH 59

Query: 154 DGSYGGYSSGKYIKETLIKIE 174
           DG  G YSSG   K+ L++IE
Sbjct: 60  DGI-GYYSSGIEEKKFLLEIE 79


>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania
           mexicana [TaxId: 5665]}
          Length = 561

 Score = 27.9 bits (61), Expect = 0.77
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 22  MLIAYYDKSCIIQAIMFGANP 42
            +IA Y+   ++Q  ++G N 
Sbjct: 496 AIIAMYEHKVLVQGAIWGINS 516


>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 556

 Score = 27.5 bits (60), Expect = 1.1
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 22  MLIAYYDKSCIIQAIMFGANP 42
            L+A Y+    +Q I++  N 
Sbjct: 488 ALVAMYEHKIFVQGIIWDINS 508


>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium
          tuberculosis [TaxId: 1773]}
          Length = 76

 Score = 24.7 bits (54), Expect = 2.4
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 5/54 (9%)

Query: 30 SCIIQAIMFGANPEYLYVDLTKLYSHIEYIKMFESKQSRDII----DRLEAYIV 79
          + +IQ          + V +       E + +  ++Q         +RL  Y+V
Sbjct: 9  AGVIQRDSRANARGLVVVRIGTETKASEGV-IPAAEQVPGESYEHGNRLRCYVV 61


>d2ev0a2 a.76.1.1 (A:63-136) Manganese transport regulator MntR
          {Bacillus subtilis [TaxId: 1423]}
          Length = 74

 Score = 24.0 bits (52), Expect = 4.9
 Identities = 5/28 (17%), Positives = 13/28 (46%)

Query: 57 EYIKMFESKQSRDIIDRLEAYIVNPKQN 84
            ++  E   S + IDR+   +   +++
Sbjct: 34 NDVEGIEHHLSWNSIDRIGDLVQYFEED 61


>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 76

 Score = 24.0 bits (52), Expect = 4.9
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 57 EYIKMFESKQSRDIIDRLEAYIVNPKQN 84
               +E   S D+  RL   + NP  +
Sbjct: 35 AEACRWEHVMSEDVERRLVKVLNNPTTS 62


>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 442

 Score = 25.3 bits (54), Expect = 5.4
 Identities = 6/21 (28%), Positives = 13/21 (61%)

Query: 22  MLIAYYDKSCIIQAIMFGANP 42
            ++ +++K+C I   + G NP
Sbjct: 389 EMVYFFEKACGISGHLLGVNP 409


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 707,621
Number of extensions: 32338
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 16
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)