Query psy12849
Match_columns 138
No_of_seqs 109 out of 1044
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:20:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2733|consensus 100.0 3.6E-32 7.8E-37 225.2 9.5 119 17-135 46-167 (423)
2 COG3268 Uncharacterized conser 99.9 1.8E-27 4E-32 195.8 10.3 116 18-133 34-153 (382)
3 PF03435 Saccharop_dh: Sacchar 99.9 3.3E-22 7.2E-27 166.3 9.2 99 28-132 44-142 (386)
4 COG1748 LYS9 Saccharopine dehy 99.8 8.7E-20 1.9E-24 153.8 11.2 97 30-132 47-143 (389)
5 PLN02819 lysine-ketoglutarate 99.5 9.9E-14 2.1E-18 128.6 9.1 97 30-132 627-723 (1042)
6 KOG0172|consensus 98.6 1.3E-07 2.9E-12 80.1 7.6 100 19-124 34-135 (445)
7 PRK00048 dihydrodipicolinate r 97.5 0.00013 2.7E-09 58.4 4.2 86 42-131 51-136 (257)
8 TIGR01921 DAP-DH diaminopimela 97.1 0.0018 3.8E-08 54.1 6.7 70 45-118 54-125 (324)
9 PF05368 NmrA: NmrA-like famil 97.0 0.0014 3.1E-08 50.4 5.3 52 30-81 43-98 (233)
10 PF01073 3Beta_HSD: 3-beta hyd 96.8 0.0029 6.4E-08 51.1 5.8 49 33-81 48-111 (280)
11 PRK13304 L-aspartate dehydroge 96.5 0.011 2.5E-07 47.4 7.1 64 45-114 55-122 (265)
12 CHL00194 ycf39 Ycf39; Provisio 96.4 0.031 6.8E-07 45.1 9.2 55 30-84 43-109 (317)
13 TIGR00036 dapB dihydrodipicoli 96.3 0.019 4E-07 46.3 7.1 65 49-118 66-131 (266)
14 cd01065 NAD_bind_Shikimate_DH 96.1 0.0038 8.1E-08 45.1 2.3 62 46-112 76-139 (155)
15 PF13460 NAD_binding_10: NADH( 96.0 0.023 4.9E-07 41.7 6.0 53 29-81 38-94 (183)
16 PRK12548 shikimate 5-dehydroge 95.8 0.021 4.6E-07 46.4 5.6 89 31-132 179-272 (289)
17 PF03447 NAD_binding_3: Homose 95.8 0.034 7.5E-07 38.7 5.9 63 45-109 51-115 (117)
18 TIGR00715 precor6x_red precorr 95.7 0.025 5.4E-07 45.6 5.4 51 33-83 45-98 (256)
19 PLN02214 cinnamoyl-CoA reducta 95.7 0.03 6.5E-07 46.0 5.9 49 30-78 60-119 (342)
20 KOG1502|consensus 95.5 0.032 7E-07 46.7 5.5 48 30-77 57-119 (327)
21 PLN02657 3,8-divinyl protochlo 95.2 0.068 1.5E-06 45.0 6.7 55 30-84 111-181 (390)
22 PRK13303 L-aspartate dehydroge 95.1 0.079 1.7E-06 42.6 6.6 66 50-117 60-125 (265)
23 PRK13302 putative L-aspartate 95.1 0.096 2.1E-06 42.3 7.0 65 45-114 61-125 (271)
24 TIGR03855 NAD_NadX aspartate d 95.0 0.1 2.2E-06 41.5 6.7 67 40-114 28-98 (229)
25 TIGR01181 dTDP_gluc_dehyt dTDP 94.9 0.078 1.7E-06 41.7 6.0 52 31-82 51-122 (317)
26 TIGR02853 spore_dpaA dipicolin 94.4 0.054 1.2E-06 44.1 4.1 63 43-113 201-263 (287)
27 PLN02427 UDP-apiose/xylose syn 94.3 0.096 2.1E-06 43.4 5.4 55 30-84 65-135 (386)
28 COG1091 RfbD dTDP-4-dehydrorha 94.2 0.072 1.6E-06 43.7 4.3 47 37-84 34-99 (281)
29 PRK00258 aroE shikimate 5-dehy 94.1 0.033 7.2E-07 44.8 2.2 74 46-132 180-257 (278)
30 TIGR03466 HpnA hopanoid-associ 93.5 0.24 5.2E-06 39.2 6.2 48 31-78 44-105 (328)
31 TIGR03589 PseB UDP-N-acetylglu 93.5 0.25 5.4E-06 40.2 6.3 54 30-83 53-123 (324)
32 KOG2865|consensus 93.5 0.14 3E-06 43.0 4.8 53 30-82 109-174 (391)
33 PLN03209 translocon at the inn 93.4 0.23 4.9E-06 44.6 6.2 53 31-83 139-206 (576)
34 PRK12549 shikimate 5-dehydroge 93.3 0.088 1.9E-06 42.8 3.4 77 45-133 186-264 (284)
35 TIGR03649 ergot_EASG ergot alk 93.3 0.2 4.3E-06 39.5 5.3 50 30-79 39-98 (285)
36 PRK15181 Vi polysaccharide bio 92.9 0.33 7.1E-06 39.8 6.2 49 30-78 69-133 (348)
37 PLN02986 cinnamyl-alcohol dehy 92.6 0.13 2.7E-06 41.4 3.3 33 30-62 56-88 (322)
38 TIGR00507 aroE shikimate 5-deh 92.5 0.14 3.1E-06 40.9 3.5 70 50-132 177-250 (270)
39 COG2910 Putative NADH-flavin r 92.3 0.23 5E-06 39.0 4.2 43 21-63 31-74 (211)
40 PRK08306 dipicolinate synthase 92.3 0.12 2.6E-06 42.3 2.8 63 43-113 202-264 (296)
41 TIGR01179 galE UDP-glucose-4-e 92.2 0.41 8.9E-06 37.7 5.8 48 31-78 48-113 (328)
42 cd01483 E1_enzyme_family Super 92.0 0.93 2E-05 32.4 6.9 43 43-86 81-123 (143)
43 PF00899 ThiF: ThiF family; I 91.9 0.66 1.4E-05 33.0 6.1 51 32-84 74-124 (135)
44 PLN02695 GDP-D-mannose-3',5'-e 91.9 0.37 8E-06 40.1 5.4 50 32-81 66-133 (370)
45 PRK09987 dTDP-4-dehydrorhamnos 91.8 0.46 1E-05 38.1 5.6 50 34-83 35-102 (299)
46 PF01113 DapB_N: Dihydrodipico 91.6 0.12 2.6E-06 36.8 1.8 61 43-110 59-120 (124)
47 PLN02989 cinnamyl-alcohol dehy 91.6 0.21 4.6E-06 40.0 3.5 33 30-62 56-88 (325)
48 TIGR01214 rmlD dTDP-4-dehydror 91.5 0.42 9.1E-06 37.4 5.1 48 36-83 33-98 (287)
49 PRK11908 NAD-dependent epimera 91.5 0.51 1.1E-05 38.4 5.7 52 30-81 46-114 (347)
50 PLN02662 cinnamyl-alcohol dehy 91.4 0.2 4.3E-06 39.9 3.1 49 30-78 55-119 (322)
51 PF01370 Epimerase: NAD depend 91.4 0.39 8.5E-06 36.1 4.6 48 31-78 43-108 (236)
52 PRK06182 short chain dehydroge 91.1 0.39 8.5E-06 37.5 4.5 33 30-62 46-85 (273)
53 PRK06179 short chain dehydroge 91.1 0.29 6.3E-06 38.0 3.7 33 30-62 45-84 (270)
54 PRK14027 quinate/shikimate deh 91.1 0.38 8.2E-06 39.2 4.5 75 45-132 188-265 (283)
55 PRK13301 putative L-aspartate 91.0 1.7 3.6E-05 35.6 8.1 63 45-113 55-122 (267)
56 PLN00198 anthocyanidin reducta 90.8 0.3 6.5E-06 39.5 3.7 32 31-62 60-91 (338)
57 PRK12749 quinate/shikimate deh 90.8 0.91 2E-05 37.0 6.5 77 43-132 188-269 (288)
58 PLN02240 UDP-glucose 4-epimera 90.7 0.73 1.6E-05 37.2 5.9 53 30-82 58-129 (352)
59 PRK06270 homoserine dehydrogen 90.4 1.8 3.9E-05 36.0 8.1 66 44-111 80-150 (341)
60 cd01078 NAD_bind_H4MPT_DH NADP 90.4 0.41 8.8E-06 36.1 3.9 62 31-93 77-138 (194)
61 PRK08057 cobalt-precorrin-6x r 90.2 0.66 1.4E-05 37.2 5.1 52 32-83 44-98 (248)
62 PRK08374 homoserine dehydrogen 90.1 1.7 3.7E-05 36.2 7.6 73 45-121 83-157 (336)
63 KOG1205|consensus 90.0 0.72 1.6E-05 37.9 5.2 103 31-137 64-180 (282)
64 cd00757 ThiF_MoeB_HesA_family 89.8 1.5 3.3E-05 34.2 6.8 50 32-83 93-142 (228)
65 COG0036 Rpe Pentose-5-phosphat 89.7 1.2 2.6E-05 35.4 6.1 103 8-114 9-122 (220)
66 PF07994 NAD_binding_5: Myo-in 89.6 0.76 1.6E-05 38.0 5.1 44 68-114 191-234 (295)
67 PRK07326 short chain dehydroge 89.6 0.58 1.3E-05 35.4 4.2 34 30-63 54-94 (237)
68 TIGR03450 mycothiol_INO1 inosi 89.5 1.2 2.6E-05 37.7 6.2 67 42-112 112-182 (351)
69 PRK09186 flagellin modificatio 89.2 0.55 1.2E-05 36.0 3.8 32 31-62 56-94 (256)
70 PLN02725 GDP-4-keto-6-deoxyman 89.1 0.74 1.6E-05 36.2 4.6 47 35-81 31-97 (306)
71 TIGR01182 eda Entner-Doudoroff 89.1 2.1 4.7E-05 33.5 7.1 89 24-125 26-118 (204)
72 PRK10217 dTDP-glucose 4,6-dehy 89.0 0.5 1.1E-05 38.3 3.6 33 31-63 52-86 (355)
73 PRK06349 homoserine dehydrogen 89.0 1.6 3.4E-05 37.5 6.8 64 45-111 64-129 (426)
74 PF02571 CbiJ: Precorrin-6x re 88.8 1.2 2.7E-05 35.7 5.7 51 33-83 46-99 (249)
75 PLN02686 cinnamoyl-CoA reducta 88.4 1.1 2.5E-05 37.1 5.5 46 31-76 108-169 (367)
76 PF04321 RmlD_sub_bind: RmlD s 88.4 0.7 1.5E-05 37.1 4.1 49 36-84 34-100 (286)
77 PLN02253 xanthoxin dehydrogena 88.2 0.79 1.7E-05 35.8 4.2 32 30-61 66-104 (280)
78 COG1712 Predicted dinucleotide 87.9 2.1 4.5E-05 34.6 6.4 64 44-113 53-120 (255)
79 PRK06552 keto-hydroxyglutarate 87.9 4.5 9.8E-05 31.7 8.2 89 24-125 31-126 (213)
80 PRK09134 short chain dehydroge 87.8 0.62 1.3E-05 36.0 3.3 33 30-62 59-98 (258)
81 PRK05865 hypothetical protein; 87.8 1.5 3.3E-05 41.2 6.3 55 31-85 41-103 (854)
82 COG2099 CobK Precorrin-6x redu 87.7 1.4 3.1E-05 35.8 5.4 83 31-114 44-137 (257)
83 PF01408 GFO_IDH_MocA: Oxidore 87.7 3 6.6E-05 28.3 6.5 60 45-110 54-118 (120)
84 PLN00016 RNA-binding protein; 87.6 0.68 1.5E-05 38.4 3.6 48 31-81 111-161 (378)
85 PRK05884 short chain dehydroge 87.4 0.88 1.9E-05 34.8 3.9 32 31-62 45-80 (223)
86 PRK07856 short chain dehydroge 87.4 0.7 1.5E-05 35.6 3.4 33 30-62 47-86 (252)
87 PRK09291 short chain dehydroge 87.4 1 2.3E-05 34.4 4.4 32 31-62 52-84 (257)
88 TIGR01472 gmd GDP-mannose 4,6- 87.3 0.9 1.9E-05 36.9 4.1 48 31-78 56-121 (343)
89 PRK08267 short chain dehydroge 87.2 0.73 1.6E-05 35.6 3.4 33 30-62 48-88 (260)
90 COG0002 ArgC Acetylglutamate s 87.2 0.75 1.6E-05 38.9 3.7 78 41-124 62-162 (349)
91 PF00389 2-Hacid_dh: D-isomer 87.2 3.3 7.2E-05 29.2 6.6 76 32-116 19-94 (133)
92 PRK08125 bifunctional UDP-gluc 87.1 1.3 2.8E-05 39.8 5.4 53 30-82 360-429 (660)
93 COG0300 DltE Short-chain dehyd 87.0 0.7 1.5E-05 37.6 3.3 36 30-66 56-98 (265)
94 PLN02650 dihydroflavonol-4-red 87.0 0.82 1.8E-05 37.2 3.7 47 31-77 57-118 (351)
95 PRK08219 short chain dehydroge 86.9 1.1 2.3E-05 33.6 4.1 32 31-62 48-82 (227)
96 PRK09009 C factor cell-cell si 86.9 1 2.3E-05 34.1 4.1 34 30-63 43-79 (235)
97 PRK07666 fabG 3-ketoacyl-(acyl 86.9 0.88 1.9E-05 34.6 3.7 34 30-63 56-96 (239)
98 PRK06138 short chain dehydroge 86.9 1 2.2E-05 34.3 4.0 33 30-62 53-92 (252)
99 PF01118 Semialdhyde_dh: Semia 86.8 1.1 2.4E-05 31.4 3.9 36 50-87 65-100 (121)
100 PRK08220 2,3-dihydroxybenzoate 86.8 1 2.2E-05 34.4 4.0 33 30-62 48-87 (252)
101 PRK05867 short chain dehydroge 86.8 1 2.2E-05 34.7 4.0 34 30-63 58-98 (253)
102 PRK06463 fabG 3-ketoacyl-(acyl 86.8 1.2 2.6E-05 34.3 4.4 32 31-62 52-90 (255)
103 PRK07453 protochlorophyllide o 86.7 0.9 2E-05 36.6 3.8 33 30-62 55-94 (322)
104 PRK00436 argC N-acetyl-gamma-g 86.7 0.82 1.8E-05 38.1 3.6 40 48-89 65-104 (343)
105 PRK04207 glyceraldehyde-3-phos 86.7 1.1 2.3E-05 37.4 4.3 40 45-86 72-111 (341)
106 PRK08643 acetoin reductase; Va 86.6 1 2.3E-05 34.5 4.0 33 30-62 51-90 (256)
107 PRK10084 dTDP-glucose 4,6 dehy 86.5 1 2.3E-05 36.4 4.1 32 31-62 51-84 (352)
108 PRK11579 putative oxidoreducta 86.4 5.8 0.00013 32.6 8.5 75 44-124 55-134 (346)
109 TIGR02356 adenyl_thiF thiazole 86.4 3.4 7.3E-05 31.7 6.7 42 41-83 101-142 (202)
110 PLN00141 Tic62-NAD(P)-related 86.4 3 6.5E-05 32.3 6.5 47 31-77 63-123 (251)
111 TIGR01809 Shik-DH-AROM shikima 86.4 1.5 3.2E-05 35.5 4.9 76 43-131 182-266 (282)
112 PRK13394 3-hydroxybutyrate deh 86.3 0.95 2.1E-05 34.7 3.6 32 31-62 57-95 (262)
113 PRK06482 short chain dehydroge 86.2 1.1 2.4E-05 35.0 3.9 33 30-62 48-87 (276)
114 PRK10675 UDP-galactose-4-epime 86.1 2.9 6.3E-05 33.5 6.5 48 31-78 51-116 (338)
115 PRK05866 short chain dehydroge 86.0 1.1 2.4E-05 35.9 3.9 32 31-62 90-128 (293)
116 PLN02260 probable rhamnose bio 85.9 2 4.3E-05 38.5 5.9 48 30-77 57-122 (668)
117 PRK12935 acetoacetyl-CoA reduc 85.9 1.1 2.3E-05 34.2 3.7 33 31-63 57-96 (247)
118 PRK06180 short chain dehydroge 85.8 1.8 3.8E-05 34.0 5.0 33 30-62 50-89 (277)
119 PLN02896 cinnamyl-alcohol dehy 85.8 1 2.2E-05 36.8 3.7 33 30-62 58-90 (353)
120 PRK06123 short chain dehydroge 85.8 1.4 3E-05 33.5 4.3 32 31-62 53-91 (248)
121 TIGR02197 heptose_epim ADP-L-g 85.7 2.2 4.8E-05 33.6 5.5 50 34-83 45-112 (314)
122 PRK07024 short chain dehydroge 85.6 1.1 2.4E-05 34.7 3.7 32 31-62 51-89 (257)
123 PRK07454 short chain dehydroge 85.6 1.2 2.7E-05 33.8 3.9 34 30-63 55-95 (241)
124 PLN02583 cinnamoyl-CoA reducta 85.5 2.8 6E-05 33.5 6.1 47 30-76 57-117 (297)
125 PRK12746 short chain dehydroge 85.5 1.3 2.8E-05 33.9 4.0 33 30-62 56-101 (254)
126 PRK06015 keto-hydroxyglutarate 85.4 6.2 0.00013 30.8 7.8 89 24-125 22-114 (201)
127 PRK06935 2-deoxy-D-gluconate 3 85.4 1.4 3E-05 34.0 4.2 33 30-62 63-102 (258)
128 PRK10206 putative oxidoreducta 85.2 6.5 0.00014 32.5 8.3 75 44-124 55-134 (344)
129 PLN02653 GDP-mannose 4,6-dehyd 85.0 1.3 2.8E-05 35.8 4.0 48 31-78 61-126 (340)
130 PRK14851 hypothetical protein; 85.0 3.7 8.1E-05 37.6 7.2 53 31-84 114-167 (679)
131 PRK06114 short chain dehydroge 85.0 1.1 2.4E-05 34.6 3.4 32 31-62 59-97 (254)
132 PRK07890 short chain dehydroge 84.9 1.1 2.4E-05 34.3 3.3 33 30-62 54-93 (258)
133 PRK06181 short chain dehydroge 84.9 1.5 3.3E-05 33.8 4.1 33 31-63 51-90 (263)
134 PF03446 NAD_binding_2: NAD bi 84.9 1.1 2.4E-05 33.0 3.2 61 45-109 51-116 (163)
135 PRK07063 short chain dehydroge 84.9 1.4 2.9E-05 34.0 3.9 33 30-62 58-97 (260)
136 PRK12937 short chain dehydroge 84.9 1.3 2.9E-05 33.5 3.8 32 30-61 55-93 (245)
137 PRK05876 short chain dehydroge 84.8 1.6 3.5E-05 34.5 4.3 31 31-61 56-93 (275)
138 cd05311 NAD_bind_2_malic_enz N 84.8 1.1 2.4E-05 35.2 3.4 63 44-114 90-153 (226)
139 PRK09135 pteridine reductase; 84.7 1.2 2.6E-05 33.7 3.4 32 30-61 57-95 (249)
140 PRK08223 hypothetical protein; 84.7 3.2 6.9E-05 34.2 6.1 50 32-82 99-149 (287)
141 TIGR02130 dapB_plant dihydrodi 84.7 1.7 3.6E-05 35.7 4.4 81 43-131 59-144 (275)
142 TIGR02355 moeB molybdopterin s 84.7 4.7 0.0001 32.0 6.9 42 41-83 104-145 (240)
143 TIGR02415 23BDH acetoin reduct 84.5 1.1 2.4E-05 34.2 3.2 32 31-62 50-88 (254)
144 PRK06398 aldose dehydrogenase; 84.5 1.4 3.1E-05 34.2 3.9 31 31-61 45-82 (258)
145 PRK12550 shikimate 5-dehydroge 84.4 1.2 2.5E-05 36.2 3.4 73 50-135 177-255 (272)
146 PRK12826 3-ketoacyl-(acyl-carr 84.4 1.6 3.4E-05 33.1 3.9 33 31-63 56-95 (251)
147 PRK08265 short chain dehydroge 84.3 1.2 2.7E-05 34.6 3.4 33 30-62 52-91 (261)
148 PRK07677 short chain dehydroge 84.3 1.3 2.7E-05 34.1 3.5 33 30-62 50-89 (252)
149 PRK05565 fabG 3-ketoacyl-(acyl 84.3 1.5 3.2E-05 33.1 3.8 33 30-62 55-94 (247)
150 PRK12475 thiamine/molybdopteri 84.3 4.2 9E-05 34.0 6.7 51 31-83 97-147 (338)
151 PRK06947 glucose-1-dehydrogena 84.3 1.7 3.7E-05 33.1 4.2 33 30-62 52-91 (248)
152 PRK09997 hydroxypyruvate isome 84.2 12 0.00026 29.2 9.1 94 18-111 18-143 (258)
153 PRK05597 molybdopterin biosynt 84.2 4.7 0.0001 33.8 7.1 50 31-82 99-148 (355)
154 PRK07688 thiamine/molybdopteri 84.0 4.7 0.0001 33.7 6.9 51 31-83 97-147 (339)
155 PRK07370 enoyl-(acyl carrier p 84.0 1.7 3.7E-05 33.9 4.1 32 31-62 60-98 (258)
156 PRK12939 short chain dehydroge 83.9 1.6 3.4E-05 33.1 3.8 33 30-62 56-95 (250)
157 PRK07231 fabG 3-ketoacyl-(acyl 83.9 1.1 2.4E-05 34.0 3.0 32 31-62 54-92 (251)
158 PRK12825 fabG 3-ketoacyl-(acyl 83.8 1.2 2.6E-05 33.5 3.1 31 30-60 56-93 (249)
159 PRK12320 hypothetical protein; 83.7 2.7 5.8E-05 38.7 5.7 54 30-84 40-101 (699)
160 PRK08063 enoyl-(acyl carrier p 83.6 1.7 3.6E-05 33.1 3.8 32 30-61 54-92 (250)
161 PRK08993 2-deoxy-D-gluconate 3 83.6 1.4 3.1E-05 34.0 3.5 32 31-62 58-96 (253)
162 PRK06172 short chain dehydroge 83.5 1.3 2.9E-05 33.9 3.3 33 30-62 56-95 (253)
163 TIGR03325 BphB_TodD cis-2,3-di 83.5 1.5 3.2E-05 34.0 3.5 33 30-62 51-90 (262)
164 PRK07877 hypothetical protein; 83.5 4.9 0.00011 37.1 7.3 54 31-86 177-230 (722)
165 TIGR01850 argC N-acetyl-gamma- 83.5 1.4 3.1E-05 36.8 3.6 40 47-88 64-103 (346)
166 PRK06392 homoserine dehydrogen 83.5 6.6 0.00014 32.7 7.6 61 50-112 80-142 (326)
167 PRK12744 short chain dehydroge 83.4 3.2 6.9E-05 32.0 5.4 31 31-61 62-99 (257)
168 PRK12367 short chain dehydroge 83.3 1.6 3.4E-05 34.3 3.7 30 33-62 61-90 (245)
169 PRK07814 short chain dehydroge 83.3 1.9 4.1E-05 33.5 4.1 32 30-61 59-97 (263)
170 TIGR00872 gnd_rel 6-phosphoglu 83.2 6.3 0.00014 31.9 7.3 33 50-82 84-116 (298)
171 PRK06200 2,3-dihydroxy-2,3-dih 83.2 1.5 3.3E-05 33.9 3.5 32 31-62 53-91 (263)
172 PRK08416 7-alpha-hydroxysteroi 83.2 1.6 3.5E-05 33.8 3.7 33 30-62 59-98 (260)
173 PRK06079 enoyl-(acyl carrier p 83.1 1.9 4.1E-05 33.4 4.0 33 30-62 55-94 (252)
174 PRK12829 short chain dehydroge 83.0 2 4.3E-05 32.9 4.1 32 31-62 59-97 (264)
175 PRK05650 short chain dehydroge 83.0 2 4.3E-05 33.4 4.1 33 30-62 49-88 (270)
176 PTZ00325 malate dehydrogenase; 82.9 7.7 0.00017 32.2 7.8 31 34-64 59-89 (321)
177 PRK10538 malonic semialdehyde 82.8 2.1 4.5E-05 32.9 4.1 31 31-61 47-84 (248)
178 PRK12428 3-alpha-hydroxysteroi 82.8 1.2 2.6E-05 34.3 2.8 31 32-62 25-59 (241)
179 PRK07062 short chain dehydroge 82.8 1.4 3E-05 34.1 3.1 31 31-61 60-97 (265)
180 PF01081 Aldolase: KDPG and KH 82.7 5.9 0.00013 30.8 6.6 83 30-125 32-118 (196)
181 PRK12481 2-deoxy-D-gluconate 3 82.7 2.1 4.7E-05 33.0 4.2 33 30-62 55-94 (251)
182 PRK08628 short chain dehydroge 82.7 1.9 4.2E-05 33.0 3.9 32 30-61 55-93 (258)
183 PRK06194 hypothetical protein; 82.6 1.5 3.3E-05 34.2 3.4 32 31-62 56-94 (287)
184 PRK12745 3-ketoacyl-(acyl-carr 82.5 1.6 3.4E-05 33.4 3.3 32 30-61 52-90 (256)
185 PRK12429 3-hydroxybutyrate deh 82.5 2.2 4.8E-05 32.4 4.2 33 30-62 53-92 (258)
186 PF00809 Pterin_bind: Pterin b 82.5 14 0.00031 28.5 8.7 80 33-114 73-174 (210)
187 PRK08340 glucose-1-dehydrogena 82.5 2 4.3E-05 33.2 3.9 32 31-62 49-87 (259)
188 PRK07774 short chain dehydroge 82.4 2 4.4E-05 32.6 3.9 31 31-61 56-93 (250)
189 COG0673 MviM Predicted dehydro 82.4 10 0.00023 30.3 8.2 75 44-124 58-137 (342)
190 PRK12827 short chain dehydroge 82.4 2.2 4.8E-05 32.2 4.1 34 30-63 59-99 (249)
191 cd01485 E1-1_like Ubiquitin ac 82.3 7.7 0.00017 29.7 7.1 42 42-84 104-145 (198)
192 PRK07478 short chain dehydroge 82.2 2.1 4.6E-05 32.8 3.9 33 30-62 55-94 (254)
193 cd03315 MLE_like Muconate lact 82.2 23 0.00049 27.9 10.1 95 31-131 156-257 (265)
194 PRK05875 short chain dehydroge 82.1 2 4.3E-05 33.4 3.8 32 30-61 58-96 (276)
195 PRK08277 D-mannonate oxidoredu 82.0 2 4.3E-05 33.5 3.8 32 31-62 60-98 (278)
196 PRK07577 short chain dehydroge 81.9 2.4 5.3E-05 31.8 4.2 31 33-63 44-80 (234)
197 PRK07576 short chain dehydroge 81.9 1.6 3.4E-05 34.1 3.2 31 31-61 59-96 (264)
198 PRK07806 short chain dehydroge 81.6 2.4 5.1E-05 32.3 4.0 32 31-62 57-95 (248)
199 PRK08264 short chain dehydroge 81.6 2.4 5.3E-05 32.0 4.1 32 30-61 49-83 (238)
200 PRK07411 hypothetical protein; 81.6 6.1 0.00013 33.5 6.9 50 31-82 109-158 (390)
201 PRK08263 short chain dehydroge 81.5 1.8 4E-05 33.8 3.5 33 30-62 49-88 (275)
202 PRK07074 short chain dehydroge 81.5 2.8 6.2E-05 32.1 4.5 32 30-61 49-87 (257)
203 PRK08328 hypothetical protein; 81.4 8.9 0.00019 30.1 7.3 41 41-82 108-148 (231)
204 PRK06196 oxidoreductase; Provi 81.4 2.2 4.7E-05 34.3 3.9 32 31-62 72-110 (315)
205 PRK06171 sorbitol-6-phosphate 81.4 1.7 3.8E-05 33.6 3.2 32 31-62 50-88 (266)
206 PRK06940 short chain dehydroge 81.3 2.1 4.6E-05 33.8 3.7 32 31-62 50-87 (275)
207 COG0169 AroE Shikimate 5-dehyd 81.3 1.5 3.2E-05 36.0 2.9 70 51-133 190-263 (283)
208 PRK05693 short chain dehydroge 81.2 4 8.6E-05 31.8 5.3 31 31-61 45-82 (274)
209 PRK05854 short chain dehydroge 81.2 2.2 4.7E-05 34.5 3.8 33 30-62 65-104 (313)
210 PRK06841 short chain dehydroge 81.0 2.6 5.7E-05 32.2 4.1 33 30-62 61-100 (255)
211 cd01487 E1_ThiF_like E1_ThiF_l 81.0 7.8 0.00017 29.1 6.6 54 31-86 69-123 (174)
212 PRK07201 short chain dehydroge 80.9 3.6 7.9E-05 36.3 5.4 48 30-78 51-117 (657)
213 PRK09989 hypothetical protein; 80.8 16 0.00036 28.5 8.7 93 18-110 18-142 (258)
214 PRK08339 short chain dehydroge 80.8 2.6 5.6E-05 33.0 4.0 33 30-62 58-96 (263)
215 PRK05690 molybdopterin biosynt 80.8 7.4 0.00016 30.9 6.7 42 41-83 112-153 (245)
216 KOG1200|consensus 80.8 1.4 3E-05 35.2 2.4 39 23-61 54-100 (256)
217 PRK06197 short chain dehydroge 80.8 2.3 4.9E-05 33.9 3.8 32 30-61 67-105 (306)
218 PRK05717 oxidoreductase; Valid 80.7 1.9 4.2E-05 33.1 3.3 32 31-62 57-95 (255)
219 PRK08278 short chain dehydroge 80.7 2.7 5.9E-05 33.0 4.1 32 30-61 62-100 (273)
220 cd05212 NAD_bind_m-THF_DH_Cycl 80.7 5.6 0.00012 29.2 5.5 84 31-130 52-135 (140)
221 PRK12823 benD 1,6-dihydroxycyc 80.5 4.7 0.0001 30.9 5.4 30 31-60 57-93 (260)
222 PRK05993 short chain dehydroge 80.5 1.9 4.1E-05 33.9 3.2 31 31-61 48-86 (277)
223 PRK07825 short chain dehydroge 80.3 1.9 4.2E-05 33.5 3.2 32 31-62 51-89 (273)
224 PF00106 adh_short: short chai 80.3 5.1 0.00011 28.4 5.2 34 30-63 52-92 (167)
225 PRK08589 short chain dehydroge 80.3 2.1 4.5E-05 33.5 3.4 32 31-62 55-93 (272)
226 PRK08642 fabG 3-ketoacyl-(acyl 80.2 2.4 5.1E-05 32.3 3.6 32 30-61 52-91 (253)
227 PRK06139 short chain dehydroge 80.2 2.7 5.8E-05 34.6 4.1 31 31-61 57-94 (330)
228 PRK07832 short chain dehydroge 80.2 4.5 9.8E-05 31.5 5.2 32 31-62 51-89 (272)
229 PRK07904 short chain dehydroge 80.2 3.9 8.4E-05 31.8 4.8 33 30-62 60-98 (253)
230 PRK07523 gluconate 5-dehydroge 80.1 2.5 5.4E-05 32.5 3.7 32 31-62 60-98 (255)
231 COG0460 ThrA Homoserine dehydr 80.1 9.5 0.00021 32.2 7.3 62 50-113 77-140 (333)
232 PRK07878 molybdopterin biosynt 80.0 7.4 0.00016 33.0 6.8 49 32-82 114-162 (392)
233 TIGR01692 HIBADH 3-hydroxyisob 79.9 4.6 0.0001 32.4 5.3 62 45-110 46-113 (288)
234 PRK07097 gluconate 5-dehydroge 79.8 2.7 5.8E-05 32.6 3.8 32 31-62 60-98 (265)
235 TIGR01830 3oxo_ACP_reduc 3-oxo 79.8 2.4 5.2E-05 31.8 3.4 32 31-62 49-87 (239)
236 PRK14852 hypothetical protein; 79.7 7.7 0.00017 37.2 7.3 61 22-83 393-455 (989)
237 PRK14178 bifunctional 5,10-met 79.7 8.8 0.00019 31.5 6.9 40 40-84 184-224 (279)
238 PRK12936 3-ketoacyl-(acyl-carr 79.7 2.7 5.9E-05 31.7 3.8 31 31-61 53-90 (245)
239 PRK08177 short chain dehydroge 79.7 3 6.4E-05 31.5 4.0 32 31-62 46-82 (225)
240 PRK08226 short chain dehydroge 79.7 3.9 8.4E-05 31.5 4.6 31 31-61 55-92 (263)
241 PRK06113 7-alpha-hydroxysteroi 79.6 2.3 5.1E-05 32.7 3.4 32 31-62 61-99 (255)
242 PRK06949 short chain dehydroge 79.6 3.4 7.3E-05 31.6 4.3 32 31-62 59-97 (258)
243 PRK05599 hypothetical protein; 79.5 4.9 0.00011 31.0 5.2 34 30-63 49-89 (246)
244 PRK05653 fabG 3-ketoacyl-(acyl 79.5 2.2 4.8E-05 32.0 3.2 33 30-62 54-93 (246)
245 PRK08644 thiamine biosynthesis 79.4 8.6 0.00019 29.8 6.6 54 31-86 98-152 (212)
246 TIGR03206 benzo_BadH 2-hydroxy 79.4 3 6.5E-05 31.6 3.9 32 30-61 52-90 (250)
247 PRK08415 enoyl-(acyl carrier p 79.4 2.1 4.5E-05 34.0 3.1 29 33-61 58-93 (274)
248 PRK07114 keto-hydroxyglutarate 79.2 17 0.00037 28.8 8.2 89 24-125 33-129 (222)
249 PRK07831 short chain dehydroge 79.2 2.1 4.6E-05 33.1 3.0 32 30-61 69-107 (262)
250 PRK06523 short chain dehydroge 79.1 2.3 4.9E-05 32.7 3.2 32 30-61 49-87 (260)
251 TIGR01851 argC_other N-acetyl- 79.1 1.1 2.3E-05 37.4 1.4 67 45-113 43-116 (310)
252 PRK07109 short chain dehydroge 79.1 3.1 6.6E-05 34.1 4.1 33 30-62 57-96 (334)
253 PRK11559 garR tartronate semia 78.9 6.1 0.00013 31.6 5.7 62 45-111 52-120 (296)
254 PRK07069 short chain dehydroge 78.8 2.6 5.7E-05 32.0 3.4 32 32-63 53-91 (251)
255 PRK08251 short chain dehydroge 78.8 3 6.5E-05 31.7 3.8 32 30-61 53-91 (248)
256 TIGR03234 OH-pyruv-isom hydrox 78.7 28 0.00061 26.9 9.3 96 17-112 16-143 (254)
257 TIGR01829 AcAcCoA_reduct aceto 78.6 3.2 7E-05 31.2 3.8 33 30-62 50-89 (242)
258 PRK07067 sorbitol dehydrogenas 78.5 3.4 7.4E-05 31.7 4.0 32 31-62 53-91 (257)
259 PRK07889 enoyl-(acyl carrier p 78.5 2.7 5.9E-05 32.7 3.5 32 31-62 58-96 (256)
260 TIGR02622 CDP_4_6_dhtase CDP-g 78.4 3 6.5E-05 33.9 3.9 31 31-61 53-85 (349)
261 PRK06813 homoserine dehydrogen 78.4 9.7 0.00021 32.1 6.9 59 51-112 86-148 (346)
262 PF03446 NAD_binding_2: NAD bi 78.4 6.4 0.00014 28.9 5.3 53 31-83 57-118 (163)
263 cd01489 Uba2_SUMO Ubiquitin ac 78.2 8 0.00017 32.1 6.3 52 31-83 70-121 (312)
264 PRK12938 acetyacetyl-CoA reduc 78.2 3.7 8E-05 31.2 4.1 32 31-62 54-92 (246)
265 PRK05718 keto-hydroxyglutarate 78.0 26 0.00056 27.5 8.8 87 24-123 33-123 (212)
266 PRK06198 short chain dehydroge 78.0 2.5 5.4E-05 32.4 3.1 32 31-62 57-95 (260)
267 PRK07578 short chain dehydroge 77.9 3.3 7.1E-05 30.7 3.6 30 33-62 34-66 (199)
268 PRK07102 short chain dehydroge 77.8 2.5 5.4E-05 32.2 3.1 33 30-62 51-87 (243)
269 PRK08309 short chain dehydroge 77.8 6.3 0.00014 29.8 5.2 58 30-89 47-116 (177)
270 PRK05855 short chain dehydroge 77.8 2.5 5.5E-05 36.1 3.4 32 31-62 365-403 (582)
271 cd01484 E1-2_like Ubiquitin ac 77.8 8.7 0.00019 30.5 6.2 51 32-83 71-122 (234)
272 TIGR01832 kduD 2-deoxy-D-gluco 77.7 3.1 6.8E-05 31.6 3.6 33 30-62 52-91 (248)
273 PRK06128 oxidoreductase; Provi 77.7 3.2 6.9E-05 33.1 3.7 31 31-61 107-144 (300)
274 PRK06914 short chain dehydroge 77.7 2.4 5.3E-05 33.0 3.0 33 30-63 54-93 (280)
275 PRK09730 putative NAD(P)-bindi 77.7 2.4 5.3E-05 32.0 2.9 32 31-62 52-90 (247)
276 TIGR00978 asd_EA aspartate-sem 77.6 4.8 0.0001 33.4 4.9 37 49-87 71-107 (341)
277 PRK07984 enoyl-(acyl carrier p 77.4 2.6 5.7E-05 33.2 3.2 31 31-61 57-94 (262)
278 PLN02778 3,5-epimerase/4-reduc 77.3 5.9 0.00013 31.9 5.2 46 35-80 39-105 (298)
279 COG1023 Gnd Predicted 6-phosph 77.1 19 0.00042 29.6 8.0 60 24-83 54-118 (300)
280 PRK07791 short chain dehydroge 77.1 2.8 6E-05 33.3 3.3 32 31-62 65-103 (286)
281 PRK06077 fabG 3-ketoacyl-(acyl 76.9 7.6 0.00016 29.4 5.5 31 31-61 57-94 (252)
282 PRK07424 bifunctional sterol d 76.9 3.6 7.8E-05 35.3 4.0 32 31-62 225-256 (406)
283 PRK05600 thiamine biosynthesis 76.9 12 0.00027 31.6 7.2 49 32-82 113-161 (370)
284 TIGR01500 sepiapter_red sepiap 76.8 2.5 5.5E-05 32.6 2.9 32 31-62 56-98 (256)
285 smart00822 PKS_KR This enzymat 76.8 2.7 5.9E-05 29.3 2.8 32 31-62 54-92 (180)
286 PRK12824 acetoacetyl-CoA reduc 76.7 3.5 7.6E-05 31.1 3.6 31 30-60 52-89 (245)
287 PLN00015 protochlorophyllide r 76.6 2.9 6.3E-05 33.6 3.3 33 30-62 47-86 (308)
288 PRK12384 sorbitol-6-phosphate 76.5 3 6.5E-05 32.0 3.2 32 30-61 53-91 (259)
289 PRK07533 enoyl-(acyl carrier p 76.5 2.6 5.7E-05 32.8 2.9 31 32-62 62-99 (258)
290 PRK09072 short chain dehydroge 76.4 3.4 7.3E-05 31.9 3.4 33 30-62 53-91 (263)
291 PRK08936 glucose-1-dehydrogena 76.3 3.2 6.9E-05 32.0 3.3 32 30-61 57-95 (261)
292 PRK12828 short chain dehydroge 76.3 5.8 0.00013 29.6 4.7 32 31-62 55-93 (239)
293 PRK12748 3-ketoacyl-(acyl-carr 76.2 3.7 8E-05 31.6 3.6 33 30-62 67-106 (256)
294 PRK06124 gluconate 5-dehydroge 76.2 3.5 7.5E-05 31.6 3.5 32 31-62 61-99 (256)
295 PRK07041 short chain dehydroge 76.1 4.1 8.8E-05 30.6 3.8 32 30-61 45-79 (230)
296 PRK08762 molybdopterin biosynt 75.9 5.6 0.00012 33.4 4.9 42 41-83 215-256 (376)
297 PRK08594 enoyl-(acyl carrier p 75.9 3.8 8.3E-05 31.9 3.7 32 30-61 59-97 (257)
298 TIGR00284 dihydropteroate synt 75.9 57 0.0012 29.0 11.3 80 34-117 210-292 (499)
299 PTZ00142 6-phosphogluconate de 75.7 25 0.00054 30.8 9.0 36 47-82 89-124 (470)
300 PRK08213 gluconate 5-dehydroge 75.5 3.9 8.5E-05 31.4 3.6 31 31-61 62-99 (259)
301 PRK12743 oxidoreductase; Provi 75.5 4.5 9.7E-05 31.2 3.9 33 30-62 52-91 (256)
302 PRK07792 fabG 3-ketoacyl-(acyl 75.4 3.4 7.4E-05 33.2 3.4 33 30-62 62-100 (306)
303 PRK06701 short chain dehydroge 75.4 4.2 9E-05 32.4 3.8 32 31-62 97-135 (290)
304 PLN02968 Probable N-acetyl-gam 75.4 1.9 4.2E-05 36.7 2.0 36 49-87 102-137 (381)
305 TIGR01758 MDH_euk_cyt malate d 75.3 10 0.00023 31.4 6.3 33 32-64 45-88 (324)
306 PRK05557 fabG 3-ketoacyl-(acyl 75.3 5 0.00011 30.0 4.1 33 30-62 55-94 (248)
307 PRK06500 short chain dehydroge 75.2 5 0.00011 30.4 4.1 31 31-61 53-90 (249)
308 PRK06505 enoyl-(acyl carrier p 75.1 2.9 6.3E-05 33.0 2.8 29 33-61 60-95 (271)
309 PRK05872 short chain dehydroge 75.0 3.5 7.6E-05 32.9 3.3 32 31-62 58-96 (296)
310 PRK08690 enoyl-(acyl carrier p 74.9 4.1 8.8E-05 31.8 3.6 31 32-62 58-95 (261)
311 PRK07775 short chain dehydroge 74.9 4.3 9.3E-05 31.8 3.7 32 31-62 60-98 (274)
312 smart00481 POLIIIAc DNA polyme 74.8 6 0.00013 24.6 3.8 47 66-114 17-63 (67)
313 TIGR01746 Thioester-redct thio 74.8 8.7 0.00019 30.5 5.5 50 30-79 61-129 (367)
314 PRK06125 short chain dehydroge 74.7 4.8 0.0001 31.0 3.9 33 30-62 57-92 (259)
315 PRK09242 tropinone reductase; 74.7 3.2 7E-05 31.9 2.9 32 30-61 60-98 (257)
316 PRK06057 short chain dehydroge 74.7 3.9 8.5E-05 31.4 3.4 30 33-62 54-90 (255)
317 PLN02572 UDP-sulfoquinovose sy 74.7 4.4 9.6E-05 34.7 4.0 48 31-78 114-182 (442)
318 PRK14185 bifunctional 5,10-met 74.6 2.9 6.2E-05 34.6 2.7 41 41-81 194-237 (293)
319 cd01422 MGS Methylglyoxal synt 74.6 9.2 0.0002 26.9 5.0 41 43-83 60-107 (115)
320 PLN02358 glyceraldehyde-3-phos 74.4 4.1 9E-05 34.2 3.7 52 33-86 77-128 (338)
321 PRK00366 ispG 4-hydroxy-3-meth 74.4 18 0.0004 30.8 7.5 102 20-125 44-150 (360)
322 PRK13210 putative L-xylulose 5 74.4 22 0.00049 27.8 7.8 96 17-112 18-153 (284)
323 PRK06953 short chain dehydroge 74.4 5.1 0.00011 30.1 4.0 32 31-62 45-81 (222)
324 COG0800 Eda 2-keto-3-deoxy-6-p 74.0 25 0.00055 27.8 7.8 92 21-124 28-122 (211)
325 cd01492 Aos1_SUMO Ubiquitin ac 73.9 12 0.00027 28.6 6.0 38 45-83 104-141 (197)
326 COG4221 Short-chain alcohol de 73.5 5.8 0.00013 32.1 4.2 101 30-134 53-167 (246)
327 PRK09599 6-phosphogluconate de 73.4 27 0.00058 28.2 8.1 53 52-109 60-116 (301)
328 COG0451 WcaG Nucleoside-diphos 73.4 7.8 0.00017 30.2 4.9 48 31-78 43-108 (314)
329 PRK09287 6-phosphogluconate de 73.3 28 0.00061 30.4 8.7 51 32-82 55-112 (459)
330 PRK07201 short chain dehydroge 73.2 4.9 0.00011 35.5 4.1 32 30-61 420-458 (657)
331 PRK08040 putative semialdehyde 73.2 4.2 9E-05 34.1 3.4 36 50-87 65-100 (336)
332 PRK07060 short chain dehydroge 73.1 5.9 0.00013 29.9 4.0 32 31-62 54-88 (245)
333 PLN02438 inositol-3-phosphate 73.1 6.3 0.00014 35.0 4.6 60 41-111 246-305 (510)
334 PLN02350 phosphogluconate dehy 73.1 43 0.00093 29.6 9.8 51 32-82 73-130 (493)
335 KOG1430|consensus 73.0 5.7 0.00012 33.8 4.2 52 29-80 54-120 (361)
336 PRK06483 dihydromonapterin red 72.9 4.7 0.0001 30.5 3.4 30 32-61 48-84 (236)
337 KOG1208|consensus 72.9 8.5 0.00018 31.9 5.2 38 28-65 84-128 (314)
338 PRK11863 N-acetyl-gamma-glutam 72.8 2.6 5.7E-05 35.0 2.1 65 47-113 46-117 (313)
339 PRK08217 fabG 3-ketoacyl-(acyl 72.7 4.4 9.6E-05 30.6 3.2 32 30-61 54-92 (253)
340 PRK14181 bifunctional 5,10-met 72.7 2.8 6.1E-05 34.6 2.2 41 41-81 190-233 (287)
341 PRK08017 oxidoreductase; Provi 72.5 39 0.00085 25.5 9.2 31 31-61 46-84 (256)
342 TIGR02886 spore_II_AA anti-sig 72.4 13 0.00029 24.8 5.3 53 53-110 9-76 (106)
343 TIGR00612 ispG_gcpE 1-hydroxy- 72.4 17 0.00036 30.9 6.8 102 20-125 36-141 (346)
344 PRK08085 gluconate 5-dehydroge 72.4 4.9 0.00011 30.8 3.5 31 31-61 59-96 (254)
345 PRK07023 short chain dehydroge 72.4 5.2 0.00011 30.4 3.6 33 30-62 45-88 (243)
346 cd00308 enolase_like Enolase-s 72.3 42 0.00091 25.8 10.9 106 20-131 110-222 (229)
347 PRK06101 short chain dehydroge 72.2 6.8 0.00015 29.9 4.2 32 30-61 46-81 (240)
348 TIGR02534 mucon_cyclo muconate 72.1 39 0.00084 28.1 9.0 94 31-130 214-314 (368)
349 COG2084 MmsB 3-hydroxyisobutyr 72.0 10 0.00023 31.2 5.4 61 45-109 51-117 (286)
350 PRK06997 enoyl-(acyl carrier p 71.9 4.9 0.00011 31.4 3.4 30 33-62 59-95 (260)
351 PRK14171 bifunctional 5,10-met 71.8 4.6 9.9E-05 33.3 3.3 39 41-83 192-230 (288)
352 smart00859 Semialdhyde_dh Semi 71.7 5.3 0.00012 27.6 3.2 38 50-88 64-103 (122)
353 COG3967 DltE Short-chain dehyd 71.7 4.1 8.9E-05 32.7 2.9 32 30-61 50-88 (245)
354 cd04726 KGPDC_HPS 3-Keto-L-gul 71.7 15 0.00033 27.4 6.0 65 43-109 42-107 (202)
355 COG0289 DapB Dihydrodipicolina 71.6 19 0.00042 29.4 6.8 63 45-114 63-126 (266)
356 TIGR00873 gnd 6-phosphoglucona 71.5 40 0.00086 29.5 9.2 34 49-82 88-121 (467)
357 TIGR01289 LPOR light-dependent 71.4 5.6 0.00012 32.1 3.7 33 30-62 53-92 (314)
358 PRK08618 ornithine cyclodeamin 71.3 1.8 3.9E-05 35.6 0.8 37 45-85 186-222 (325)
359 PRK09599 6-phosphogluconate de 71.2 24 0.00053 28.4 7.4 36 48-83 83-118 (301)
360 PRK14169 bifunctional 5,10-met 71.1 4.7 0.0001 33.2 3.2 39 41-83 189-227 (282)
361 PLN02260 probable rhamnose bio 71.0 9.1 0.0002 34.3 5.3 48 34-81 409-477 (668)
362 COG2716 GcvR Glycine cleavage 70.9 7.6 0.00016 29.9 4.1 59 51-109 3-77 (176)
363 cd01336 MDH_cytoplasmic_cytoso 70.8 14 0.0003 30.6 6.0 24 42-65 69-92 (325)
364 KOG1209|consensus 70.8 10 0.00023 30.8 5.0 85 30-119 52-148 (289)
365 COG0821 gcpE 1-hydroxy-2-methy 70.7 19 0.00041 30.7 6.7 108 11-125 32-143 (361)
366 cd00704 MDH Malate dehydrogena 70.2 34 0.00073 28.4 8.2 84 31-130 45-140 (323)
367 TIGR01692 HIBADH 3-hydroxyisob 70.1 54 0.0012 26.1 9.5 53 30-82 51-113 (288)
368 PF08659 KR: KR domain; Inter 70.0 5.1 0.00011 29.8 3.0 32 31-62 54-92 (181)
369 PRK12742 oxidoreductase; Provi 69.7 7.1 0.00015 29.3 3.8 31 32-62 53-86 (237)
370 PRK07985 oxidoreductase; Provi 69.5 5.3 0.00011 31.9 3.2 31 31-61 101-138 (294)
371 TIGR02685 pter_reduc_Leis pter 69.5 5.8 0.00013 30.8 3.3 32 31-62 53-95 (267)
372 PRK14183 bifunctional 5,10-met 69.5 6.6 0.00014 32.3 3.7 42 40-81 189-233 (281)
373 TIGR03128 RuMP_HxlA 3-hexulose 69.5 20 0.00043 27.0 6.2 89 16-111 10-108 (206)
374 PRK15116 sulfur acceptor prote 69.4 9.7 0.00021 31.0 4.7 44 41-85 110-154 (268)
375 PRK07035 short chain dehydroge 69.3 6.5 0.00014 30.0 3.5 31 31-61 58-95 (252)
376 PRK08862 short chain dehydroge 69.3 7.8 0.00017 29.8 4.0 31 31-61 55-93 (227)
377 cd01486 Apg7 Apg7 is an E1-lik 69.2 25 0.00054 29.4 7.1 43 40-83 97-139 (307)
378 PRK06484 short chain dehydroge 69.2 12 0.00026 32.0 5.5 32 31-62 316-354 (520)
379 TIGR01532 E4PD_g-proteo D-eryt 69.2 8.3 0.00018 32.2 4.3 45 40-86 78-122 (325)
380 PRK05848 nicotinate-nucleotide 69.1 16 0.00034 29.9 5.8 52 31-85 202-258 (273)
381 PRK14168 bifunctional 5,10-met 68.9 5.6 0.00012 32.9 3.3 41 41-81 198-241 (297)
382 TIGR01831 fabG_rel 3-oxoacyl-( 68.8 5.9 0.00013 29.9 3.2 32 30-61 48-86 (239)
383 PTZ00023 glyceraldehyde-3-phos 68.7 6.5 0.00014 33.1 3.6 51 33-85 72-122 (337)
384 PLN03096 glyceraldehyde-3-phos 68.4 6.4 0.00014 33.9 3.6 51 33-85 132-182 (395)
385 PRK09310 aroDE bifunctional 3- 68.2 11 0.00024 32.8 5.1 64 49-131 388-451 (477)
386 cd00532 MGS-like MGS-like doma 68.2 25 0.00055 24.2 6.1 41 43-83 57-105 (112)
387 PRK06153 hypothetical protein; 68.2 24 0.00053 30.4 7.0 52 32-86 249-300 (393)
388 cd01079 NAD_bind_m-THF_DH NAD 68.2 15 0.00033 28.7 5.3 59 44-113 119-177 (197)
389 PRK12859 3-ketoacyl-(acyl-carr 68.0 5.7 0.00012 30.7 3.0 33 30-62 68-107 (256)
390 PLN02775 Probable dihydrodipic 67.9 43 0.00093 27.7 8.2 56 51-114 79-136 (286)
391 PF13380 CoA_binding_2: CoA bi 67.9 13 0.00028 26.0 4.6 56 50-112 54-110 (116)
392 TIGR01963 PHB_DH 3-hydroxybuty 67.9 7.8 0.00017 29.3 3.7 33 30-62 50-89 (255)
393 PRK08159 enoyl-(acyl carrier p 67.9 6.7 0.00014 30.9 3.4 31 32-62 62-99 (272)
394 PRK06603 enoyl-(acyl carrier p 67.9 6.6 0.00014 30.6 3.4 29 33-61 61-96 (260)
395 cd03318 MLE Muconate Lactonizi 67.8 69 0.0015 26.5 9.9 94 31-130 215-315 (365)
396 COG0667 Tas Predicted oxidored 67.5 8.7 0.00019 31.7 4.1 64 68-134 37-112 (316)
397 PRK08300 acetaldehyde dehydrog 67.4 8 0.00017 32.1 3.8 36 50-87 69-104 (302)
398 TIGR02632 RhaD_aldol-ADH rhamn 67.3 7.6 0.00016 35.3 4.0 33 30-62 465-504 (676)
399 PLN02166 dTDP-glucose 4,6-dehy 67.3 7.9 0.00017 33.2 3.9 48 31-83 169-232 (436)
400 PRK11150 rfaD ADP-L-glycero-D- 67.3 7.8 0.00017 30.7 3.7 33 51-83 68-114 (308)
401 TIGR01505 tartro_sem_red 2-hyd 67.2 16 0.00035 29.1 5.5 61 45-110 49-116 (291)
402 PRK05671 aspartate-semialdehyd 67.2 7 0.00015 32.7 3.5 37 49-87 64-100 (336)
403 PRK14186 bifunctional 5,10-met 67.2 7.7 0.00017 32.2 3.7 48 33-81 184-234 (297)
404 TIGR01019 sucCoAalpha succinyl 67.1 16 0.00035 29.9 5.6 67 43-114 53-125 (286)
405 PRK06720 hypothetical protein; 67.0 8.6 0.00019 28.6 3.7 60 31-92 66-132 (169)
406 PRK08955 glyceraldehyde-3-phos 66.9 7 0.00015 32.8 3.5 42 41-86 80-121 (334)
407 PRK14191 bifunctional 5,10-met 66.7 13 0.00028 30.7 4.9 46 33-83 183-228 (285)
408 PRK07403 glyceraldehyde-3-phos 66.7 7.9 0.00017 32.6 3.7 51 33-85 72-122 (337)
409 PRK07729 glyceraldehyde-3-phos 66.7 9 0.00019 32.4 4.1 51 33-85 71-121 (343)
410 PRK05086 malate dehydrogenase; 66.6 26 0.00057 28.8 6.8 21 44-64 62-82 (312)
411 KOG1014|consensus 66.6 41 0.00088 28.2 7.8 96 30-127 99-202 (312)
412 PRK06484 short chain dehydroge 66.2 7.7 0.00017 33.2 3.7 31 31-61 52-89 (520)
413 PRK14190 bifunctional 5,10-met 66.1 8.2 0.00018 31.8 3.6 46 33-83 184-229 (284)
414 PLN00125 Succinyl-CoA ligase [ 66.0 14 0.0003 30.6 5.0 63 43-109 59-125 (300)
415 PLN02522 ATP citrate (pro-S)-l 65.9 18 0.00039 32.9 6.1 64 44-109 68-134 (608)
416 PRK08324 short chain dehydroge 65.7 8.9 0.00019 34.7 4.1 33 30-62 470-509 (681)
417 COG2185 Sbm Methylmalonyl-CoA 65.6 32 0.00069 25.6 6.4 77 43-120 30-107 (143)
418 KOG3923|consensus 65.6 6.3 0.00014 33.2 2.9 32 30-63 164-195 (342)
419 PRK14167 bifunctional 5,10-met 65.6 8.7 0.00019 31.8 3.7 40 40-83 193-232 (297)
420 PRK06550 fabG 3-ketoacyl-(acyl 65.6 6.8 0.00015 29.5 2.9 31 31-61 46-77 (235)
421 PF02142 MGS: MGS-like domain 65.3 8 0.00017 25.9 2.9 37 45-81 52-94 (95)
422 KOG1611|consensus 65.1 9.6 0.00021 30.8 3.7 36 30-65 54-98 (249)
423 PRK14874 aspartate-semialdehyd 64.9 8.3 0.00018 31.9 3.5 37 49-87 61-97 (334)
424 cd00739 DHPS DHPS subgroup of 64.7 13 0.00029 29.8 4.6 57 55-112 6-103 (257)
425 PRK05786 fabG 3-ketoacyl-(acyl 64.6 8.5 0.00018 28.9 3.3 33 31-63 54-93 (238)
426 PF01729 QRPTase_C: Quinolinat 64.6 15 0.00033 27.7 4.6 52 31-85 100-156 (169)
427 PRK15425 gapA glyceraldehyde-3 64.6 7.8 0.00017 32.5 3.3 44 41-86 79-122 (331)
428 PLN02383 aspartate semialdehyd 64.3 11 0.00025 31.5 4.2 37 49-87 67-103 (344)
429 PRK07535 methyltetrahydrofolat 64.0 75 0.0016 25.5 11.1 80 35-115 72-164 (261)
430 TIGR01302 IMP_dehydrog inosine 63.7 91 0.002 27.0 9.8 95 23-125 228-346 (450)
431 COG2388 Predicted acetyltransf 63.5 11 0.00023 26.3 3.3 38 77-114 38-81 (99)
432 PRK15059 tartronate semialdehy 63.2 18 0.0004 29.2 5.2 60 47-110 51-116 (292)
433 cd00019 AP2Ec AP endonuclease 63.2 46 0.00099 26.2 7.4 97 16-112 11-143 (279)
434 cd00429 RPE Ribulose-5-phospha 63.1 53 0.0012 24.4 7.4 101 9-113 6-113 (211)
435 PLN02206 UDP-glucuronate decar 63.1 12 0.00026 32.2 4.3 48 31-83 168-231 (442)
436 PRK12747 short chain dehydroge 62.7 12 0.00026 28.6 3.9 31 31-61 55-98 (252)
437 PRK14166 bifunctional 5,10-met 62.5 10 0.00023 31.1 3.6 40 42-81 191-233 (282)
438 PRK05678 succinyl-CoA syntheta 62.5 23 0.00051 29.1 5.7 69 41-114 53-127 (291)
439 PF03807 F420_oxidored: NADP o 62.5 15 0.00033 23.9 3.9 38 45-84 55-94 (96)
440 PRK09856 fructoselysine 3-epim 62.4 73 0.0016 24.8 9.4 97 16-112 14-149 (275)
441 PRK05234 mgsA methylglyoxal sy 62.3 17 0.00038 26.6 4.5 41 43-83 65-112 (142)
442 PRK08303 short chain dehydroge 62.3 8.5 0.00018 31.1 3.1 30 31-60 68-105 (305)
443 PRK12490 6-phosphogluconate de 62.2 41 0.00089 27.1 7.1 53 52-109 60-116 (299)
444 TIGR01534 GAPDH-I glyceraldehy 62.2 9.1 0.0002 32.0 3.3 34 51-86 90-123 (327)
445 PTZ00170 D-ribulose-5-phosphat 62.1 35 0.00075 26.7 6.4 74 8-87 12-98 (228)
446 PF13740 ACT_6: ACT domain; PD 62.0 21 0.00045 22.9 4.4 56 53-109 2-74 (76)
447 PLN02350 phosphogluconate dehy 61.9 36 0.00078 30.1 7.1 73 40-118 61-137 (493)
448 PRK13535 erythrose 4-phosphate 61.8 9.3 0.0002 32.1 3.3 44 41-86 81-124 (336)
449 cd01424 MGS_CPS_II Methylglyox 61.2 22 0.00048 24.2 4.7 42 41-82 55-100 (110)
450 PRK05395 3-dehydroquinate dehy 61.2 19 0.00041 27.0 4.5 65 23-91 38-107 (146)
451 PRK06924 short chain dehydroge 61.2 8.7 0.00019 29.2 2.8 32 30-61 48-90 (251)
452 PRK08261 fabG 3-ketoacyl-(acyl 60.8 15 0.00033 31.0 4.5 31 32-62 258-295 (450)
453 PRK07114 keto-hydroxyglutarate 60.8 39 0.00084 26.7 6.5 48 43-90 6-53 (222)
454 PRK08005 epimerase; Validated 60.4 40 0.00087 26.4 6.5 71 8-86 6-90 (210)
455 COG1086 Predicted nucleoside-d 60.2 21 0.00045 32.4 5.3 53 29-81 301-371 (588)
456 PF01261 AP_endonuc_2: Xylose 60.2 15 0.00031 26.9 3.8 91 22-112 2-132 (213)
457 TIGR00518 alaDH alanine dehydr 59.8 16 0.00035 30.7 4.5 49 37-86 216-269 (370)
458 PRK08745 ribulose-phosphate 3- 59.5 48 0.001 26.1 6.8 71 8-86 9-94 (223)
459 PF02719 Polysacc_synt_2: Poly 59.4 12 0.00026 31.0 3.5 27 34-60 58-86 (293)
460 PRK07340 ornithine cyclodeamin 59.2 1.7 3.7E-05 35.5 -1.5 43 44-90 181-223 (304)
461 PRK05447 1-deoxy-D-xylulose 5- 59.2 51 0.0011 28.3 7.4 66 41-110 79-146 (385)
462 PRK08883 ribulose-phosphate 3- 59.1 56 0.0012 25.6 7.1 75 8-86 5-90 (220)
463 PF00534 Glycos_transf_1: Glyc 59.0 28 0.0006 24.6 5.0 46 36-83 77-122 (172)
464 TIGR01296 asd_B aspartate-semi 58.8 21 0.00046 29.7 4.9 37 49-87 59-95 (339)
465 PRK14187 bifunctional 5,10-met 58.7 14 0.0003 30.6 3.7 48 33-81 186-236 (294)
466 TIGR03693 ocin_ThiF_like putat 58.0 44 0.00094 30.7 7.0 67 14-81 168-235 (637)
467 KOG1201|consensus 57.8 20 0.00043 29.9 4.5 46 31-76 87-144 (300)
468 PF13561 adh_short_C2: Enoyl-( 57.8 9.9 0.00021 29.0 2.6 32 33-64 47-86 (241)
469 PLN02237 glyceraldehyde-3-phos 57.6 15 0.00033 32.1 4.0 50 33-84 147-196 (442)
470 PF07993 NAD_binding_4: Male s 57.6 14 0.00031 28.6 3.6 35 29-63 59-99 (249)
471 cd01423 MGS_CPS_I_III Methylgl 56.7 10 0.00022 26.2 2.3 40 43-82 61-106 (116)
472 TIGR03849 arch_ComA phosphosul 56.6 40 0.00086 27.1 5.9 84 32-115 30-123 (237)
473 PRK14180 bifunctional 5,10-met 56.5 9.2 0.0002 31.5 2.3 46 33-83 184-229 (282)
474 PRK02412 aroD 3-dehydroquinate 56.4 18 0.00039 28.9 4.0 66 51-118 74-149 (253)
475 PLN02516 methylenetetrahydrofo 56.3 9.6 0.00021 31.6 2.4 46 33-83 193-238 (299)
476 PRK14192 bifunctional 5,10-met 56.2 13 0.00029 30.3 3.3 50 32-86 184-233 (283)
477 TIGR03215 ac_ald_DH_ac acetald 56.0 14 0.00031 30.2 3.4 34 51-86 64-97 (285)
478 PRK06091 membrane protein FdrA 55.9 46 0.001 30.0 6.8 70 41-114 107-177 (555)
479 TIGR01470 cysG_Nterm siroheme 55.7 21 0.00045 27.6 4.1 32 48-80 66-97 (205)
480 TIGR01501 MthylAspMutase methy 55.6 55 0.0012 23.9 6.1 52 34-86 8-61 (134)
481 PRK15461 NADH-dependent gamma- 55.5 33 0.00072 27.6 5.5 58 46-108 52-116 (296)
482 PRK12557 H(2)-dependent methyl 55.2 48 0.001 27.7 6.5 43 46-89 76-121 (342)
483 COG2875 CobM Precorrin-4 methy 55.1 92 0.002 25.3 7.7 85 44-135 42-127 (254)
484 PF04481 DUF561: Protein of un 55.0 17 0.00037 29.2 3.6 39 55-93 17-56 (242)
485 COG1082 IolE Sugar phosphate i 55.0 90 0.0019 24.0 7.7 92 19-111 19-145 (274)
486 TIGR01927 menC_gamma/gm+ o-suc 54.7 1.2E+02 0.0025 24.8 9.9 94 32-131 185-283 (307)
487 TIGR00640 acid_CoA_mut_C methy 54.7 78 0.0017 22.8 8.2 50 38-88 13-64 (132)
488 PRK14182 bifunctional 5,10-met 54.5 18 0.00039 29.8 3.7 26 41-66 190-215 (282)
489 TIGR00872 gnd_rel 6-phosphoglu 54.5 51 0.0011 26.6 6.4 65 40-110 48-116 (298)
490 PRK14184 bifunctional 5,10-met 54.3 75 0.0016 26.2 7.3 46 33-83 187-232 (286)
491 PLN02996 fatty acyl-CoA reduct 54.3 16 0.00035 31.8 3.7 33 30-62 84-123 (491)
492 PRK14172 bifunctional 5,10-met 54.2 10 0.00022 31.1 2.3 46 33-83 184-229 (278)
493 PF02882 THF_DHG_CYH_C: Tetrah 53.9 7.8 0.00017 29.1 1.4 33 32-65 61-93 (160)
494 PLN02897 tetrahydrofolate dehy 53.8 14 0.00031 31.3 3.1 37 43-83 249-285 (345)
495 PRK08291 ectoine utilization p 53.7 3.4 7.4E-05 34.1 -0.6 35 45-83 191-226 (330)
496 TIGR03603 cyclo_dehy_ocin bact 53.6 23 0.00051 29.3 4.3 37 45-81 145-182 (318)
497 TIGR01777 yfcH conserved hypot 53.5 18 0.00038 28.0 3.4 36 43-78 49-102 (292)
498 TIGR02717 AcCoA-syn-alpha acet 53.5 37 0.00081 29.3 5.7 64 44-109 57-125 (447)
499 PRK13789 phosphoribosylamine-- 53.5 30 0.00065 29.7 5.1 47 35-83 50-98 (426)
500 PF00834 Ribul_P_3_epim: Ribul 53.3 10 0.00022 29.4 2.0 70 9-86 6-89 (201)
No 1
>KOG2733|consensus
Probab=99.97 E-value=3.6e-32 Score=225.19 Aligned_cols=119 Identities=47% Similarity=0.803 Sum_probs=107.2
Q ss_pred HHHHHHhhhhcC---CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849 17 IFLFLQKASWFG---VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYM 93 (138)
Q Consensus 17 ~~~~~~~a~~~~---~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~ 93 (138)
+-.-|+|+.+.. .++..++.+|..|+++|.++++++.|||||+|||..+|++|++||+++|+||||++|||.|++.|
T Consensus 46 L~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~m 125 (423)
T KOG2733|consen 46 LQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERM 125 (423)
T ss_pred HHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHH
Confidence 333444444432 24445999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhCCCEEEeCCCCccchHhHHHHHHHHHhhhhcC
Q psy12849 94 QYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGHSG 135 (138)
Q Consensus 94 ~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~~~~~~~~ 135 (138)
+.+||++|+++|+.||.+|||||.|.|+++.++.+.|.+.+|
T Consensus 126 q~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~f~~k~fdg~ln 167 (423)
T KOG2733|consen 126 QLKYHDLAKEKGVYIVSACGFDSIPADLGVMFLRKNFDGVLN 167 (423)
T ss_pred HHHHHHHHHhcCeEEEeecccCCCCccceeeeehhhccccHH
Confidence 999999999999999999999999999999999999998765
No 2
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=195.84 Aligned_cols=116 Identities=32% Similarity=0.514 Sum_probs=102.1
Q ss_pred HHHHHhhhhcCC----CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849 18 FLFLQKASWFGV----RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYM 93 (138)
Q Consensus 18 ~~~~~~a~~~~~----~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~ 93 (138)
.++.|...++.. -..++...++.+++.+.+++++.+||+||+|||..+|+|++++|+.+||||+|++||..|++++
T Consensus 34 aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~ 113 (382)
T COG3268 34 ALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENS 113 (382)
T ss_pred hhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHH
Confidence 344554444421 2456777778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHhCCCEEEeCCCCccchHhHHHHHHHHHhhhh
Q psy12849 94 QYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFEGH 133 (138)
Q Consensus 94 ~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~~~~~~ 133 (138)
+..||++|+++|+.|+|+||||++|+|++++.+.+++.+.
T Consensus 114 i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~~d 153 (382)
T COG3268 114 IDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLKQALPD 153 (382)
T ss_pred HHHHHHHHHhcCCEEeccCCCCcCccchHHHHHHHhhCcc
Confidence 9999999999999999999999999999998888877654
No 3
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=99.87 E-value=3.3e-22 Score=166.34 Aligned_cols=99 Identities=25% Similarity=0.469 Sum_probs=83.7
Q ss_pred CCCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE
Q psy12849 28 GVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC 107 (138)
Q Consensus 28 ~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~ 107 (138)
...+++++++|+.|+++|.++++++|+||||+||| ++.+++++|+++|+||||.+. +...+.+||++|+++|++
T Consensus 44 ~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~--~~~~v~~~~i~~g~~yvD~~~----~~~~~~~l~~~a~~~g~~ 117 (386)
T PF03435_consen 44 LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF--FGEPVARACIEAGVHYVDTSY----VTEEMLALDEEAKEAGVT 117 (386)
T ss_dssp TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--GHHHHHHHHHHHT-EEEESS-----HHHHHHHCHHHHHHTTSE
T ss_pred cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--hhHHHHHHHHHhCCCeeccch----hHHHHHHHHHHHHhhCCE
Confidence 44789999999999999999999999999999998 668999999999999999655 333346999999999999
Q ss_pred EEeCCCCccchHhHHHHHHHHHhhh
Q psy12849 108 VVSACGIETLPIDMGVLMLQDSFEG 132 (138)
Q Consensus 108 iv~~~G~d~~p~dl~~~~~~~~~~~ 132 (138)
++++|||+|+++++++.+++++|..
T Consensus 118 ~l~~~G~~PGl~~~~a~~~~~~~~~ 142 (386)
T PF03435_consen 118 ALPGCGFDPGLSNLLARYAADELDA 142 (386)
T ss_dssp EE-S-BTTTBHHHHHHHHHHHHHHH
T ss_pred EEeCcccccchHHHHHHHHHHHhhh
Confidence 9999999999999999999999983
No 4
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=99.82 E-value=8.7e-20 Score=153.77 Aligned_cols=97 Identities=14% Similarity=0.249 Sum_probs=90.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
.+++++++|+.|.+++.+++++.|+||||++||.. ..+++||+++|+||+|+|...+.. ++|+++|+++|+++|
T Consensus 47 ~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~--~~i~ka~i~~gv~yvDts~~~~~~----~~~~~~a~~Agit~v 120 (389)
T COG1748 47 GKVEALQVDAADVDALVALIKDFDLVINAAPPFVD--LTILKACIKTGVDYVDTSYYEEPP----WKLDEEAKKAGITAV 120 (389)
T ss_pred ccceeEEecccChHHHHHHHhcCCEEEEeCCchhh--HHHHHHHHHhCCCEEEcccCCchh----hhhhHHHHHcCeEEE
Confidence 58999999999999999999999999999976654 489999999999999999987773 589999999999999
Q ss_pred eCCCCccchHhHHHHHHHHHhhh
Q psy12849 110 SACGIETLPIDMGVLMLQDSFEG 132 (138)
Q Consensus 110 ~~~G~d~~p~dl~~~~~~~~~~~ 132 (138)
++|||||+.+++++.+++++|++
T Consensus 121 ~~~G~dPGi~nv~a~~a~~~~~~ 143 (389)
T COG1748 121 LGCGFDPGITNVLAAYAAKELFD 143 (389)
T ss_pred cccCcCcchHHHHHHHHHHHhhc
Confidence 99999999999999999999985
No 5
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=99.48 E-value=9.9e-14 Score=128.57 Aligned_cols=97 Identities=20% Similarity=0.292 Sum_probs=85.3
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
+++.++++|+.|.++|.++++++|+||+|+ |+..+ ..++++|+++|+||+|.+...+-+ .+++++|+++|++++
T Consensus 627 ~~~~~v~lDv~D~e~L~~~v~~~DaVIsal-P~~~H-~~VAkaAieaGkHvv~eky~~~e~----~~L~e~Ak~AGV~~m 700 (1042)
T PLN02819 627 ENAEAVQLDVSDSESLLKYVSQVDVVISLL-PASCH-AVVAKACIELKKHLVTASYVSEEM----SALDSKAKEAGITIL 700 (1042)
T ss_pred CCCceEEeecCCHHHHHHhhcCCCEEEECC-Cchhh-HHHHHHHHHcCCCEEECcCCHHHH----HHHHHHHHHcCCEEE
Confidence 357889999999999999999999999999 66655 699999999999999998654443 477899999999999
Q ss_pred eCCCCccchHhHHHHHHHHHhhh
Q psy12849 110 SACGIETLPIDMGVLMLQDSFEG 132 (138)
Q Consensus 110 ~~~G~d~~p~dl~~~~~~~~~~~ 132 (138)
+++||||+...+++..+.+++..
T Consensus 701 ~e~GlDPGid~~lA~~~Id~~~~ 723 (1042)
T PLN02819 701 CEMGLDPGIDHMMAMKMIDDAHE 723 (1042)
T ss_pred ECCccCHHHHHHHHHHHHHhhcc
Confidence 99999999999999988888743
No 6
>KOG0172|consensus
Probab=98.61 E-value=1.3e-07 Score=80.12 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHhhhhcCC-CCcceEEeeCCCHH-HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHH
Q psy12849 19 LFLQKASWFGV-RTNRTTVVNTINES-SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYE 96 (138)
Q Consensus 19 ~~~~~a~~~~~-~~~~~~~~D~~d~~-~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~ 96 (138)
+++++|+.+.. -.++.+.+|+.+++ .|++.+++.|+|++.. ||..+ ..|+++|+..+.|.+..|.-.+-+ ++
T Consensus 34 ~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLl-P~t~h-~lVaK~~i~~~~~~vtsSyv~pe~----~~ 107 (445)
T KOG0172|consen 34 RTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLL-PYTFH-PLVAKGCIITKEDSVTSSYVDPEL----EE 107 (445)
T ss_pred hhHHHHHHHhcCCCccceEEEccchHHHHHhhhcccceeeeec-cchhh-HHHHHHHHHhhcccccccccCHHH----Hh
Confidence 46778888754 45999999999998 9999999999999999 99988 589999999999999998877665 46
Q ss_pred hHHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849 97 YNTRAQESEVCVVSACGIETLPIDMGVL 124 (138)
Q Consensus 97 ~~~~A~~~gv~iv~~~G~d~~p~dl~~~ 124 (138)
+++.++.+|++++...|+||+.-.|.+.
T Consensus 108 L~~~~v~AG~ti~~e~gldpGidhm~a~ 135 (445)
T KOG0172|consen 108 LEKAAVPAGSTIMNEIGLDPGIDHMPAM 135 (445)
T ss_pred hhhhccCCCceEecccccCcchhhhhhh
Confidence 6788999999999999999999998885
No 7
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.49 E-value=0.00013 Score=58.43 Aligned_cols=86 Identities=13% Similarity=0.055 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849 42 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM 121 (138)
Q Consensus 42 ~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl 121 (138)
..++.++++.+|+||.++-|... .++++.|+++|+|.|- |...|..+-.+++.+.+++.++.+.+..++.+.+...
T Consensus 51 ~~dl~~ll~~~DvVid~t~p~~~--~~~~~~al~~G~~vvi--gttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~ 126 (257)
T PRK00048 51 TDDLEAVLADADVLIDFTTPEAT--LENLEFALEHGKPLVI--GTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMK 126 (257)
T ss_pred cCCHHHhccCCCEEEECCCHHHH--HHHHHHHHHcCCCEEE--ECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHH
Confidence 34577777889999999966543 6899999999999993 3333333323455554444555555555543333334
Q ss_pred HHHHHHHHhh
Q psy12849 122 GVLMLQDSFE 131 (138)
Q Consensus 122 ~~~~~~~~~~ 131 (138)
.+..+++.|.
T Consensus 127 l~~~aa~~l~ 136 (257)
T PRK00048 127 LAEKAAKYLG 136 (257)
T ss_pred HHHHHHHhcC
Confidence 4456666664
No 8
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.07 E-value=0.0018 Score=54.09 Aligned_cols=70 Identities=10% Similarity=-0.029 Sum_probs=52.7
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH--HHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM--EYMQYEYNTRAQESEVCVVSACGIETLP 118 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~--~~~~~~~~~~A~~~gv~iv~~~G~d~~p 118 (138)
...++.+.|+|+-|. |...+ .+.+..++++|.|-||... ++. .+...+.++.|++.|-..+.++||||+-
T Consensus 54 ~~e~l~~iDVViIct-Ps~th-~~~~~~~L~aG~NVV~s~~--~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~ 125 (324)
T TIGR01921 54 DEKHLDDVDVLILCM-GSATD-IPEQAPYFAQFANTVDSFD--NHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGM 125 (324)
T ss_pred HHHhccCCCEEEEcC-CCccC-HHHHHHHHHcCCCEEECCC--cccCCHHHHHHHHHHHHHcCCEEEEECCCCcCh
Confidence 334457899999997 54555 5788889999999999964 232 2445577788887777788889999886
No 9
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.01 E-value=0.0014 Score=50.40 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=42.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc----cchhHHHHHHHHHcCCCee
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY----TWYGEAVVKACIEAKTHHV 81 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf----~~~~~~v~~Aci~~g~hYv 81 (138)
..++++..|..|+++|.+.++++|.|+.+.++. ......+++||.++|+.++
T Consensus 43 ~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 43 LGAEVVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp TTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred ccceEeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 356789999999999999999999999999855 2346789999999999875
No 10
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=96.81 E-value=0.0029 Score=51.06 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=42.0
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh---------------HHHHHHHHHcCCCee
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYG---------------EAVVKACIEAKTHHV 81 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~---------------~~v~~Aci~~g~hYv 81 (138)
.+++.|+.|++++.+.++++|+|++++.|....+ ..++++|.+.|+.++
T Consensus 48 ~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkrl 111 (280)
T PF01073_consen 48 EYIQGDITDPESLEEALEGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRL 111 (280)
T ss_pred eEEEeccccHHHHHHHhcCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 3889999999999999999999999988754433 478999999998863
No 11
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.48 E-value=0.011 Score=47.36 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=49.0
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC----ChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg----e~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
+.+++.++|+|+.|++|... ...++.++++|.|.+.++- +.++. .++.+.|+++|+.+....|.
T Consensus 55 ~~ell~~~DvVvi~a~~~~~--~~~~~~al~~Gk~Vvv~s~gAl~d~~~~----~~L~~aA~~~g~~l~v~sga 122 (265)
T PRK13304 55 IDELVEDVDLVVECASVNAV--EEVVPKSLENGKDVIIMSVGALADKELF----LKLYKLAKENNCKIYLPSGA 122 (265)
T ss_pred HHHHhcCCCEEEEcCChHHH--HHHHHHHHHcCCCEEEEchHHhcCHHHH----HHHHHHHHHcCCEEEEeCch
Confidence 45556889999999976543 5788999999999999764 44444 35557899999998887774
No 12
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.39 E-value=0.031 Score=45.15 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=43.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-----------hHHHHHHHHHcCC-CeeeCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-----------GEAVVKACIEAKT-HHVDIT 84 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-----------~~~v~~Aci~~g~-hYvDis 84 (138)
..++++..|+.|++++.+.++++|+|||++++.... ...++++|.++|+ ++|=+|
T Consensus 43 ~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~S 109 (317)
T CHL00194 43 WGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFS 109 (317)
T ss_pred cCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEec
Confidence 367899999999999999999999999998753211 1478999999997 555443
No 13
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.26 E-value=0.019 Score=46.26 Aligned_cols=65 Identities=18% Similarity=0.087 Sum_probs=48.3
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP 118 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p 118 (138)
...+|+||.|..|... ...++.|+++|+|.|- .+|- ..+-..++.+.|+++|+.++.+..|+.+.
T Consensus 66 ~~~~DvVIdfT~p~~~--~~~~~~al~~g~~vVigttg~---~~e~~~~l~~aA~~~g~~v~~a~NfSlGv 131 (266)
T TIGR00036 66 ETDPDVLIDFTTPEGV--LNHLKFALEHGVRLVVGTTGF---SEEDKQELADLAEKAGIAAVIAPNFSIGV 131 (266)
T ss_pred cCCCCEEEECCChHHH--HHHHHHHHHCCCCEEEECCCC---CHHHHHHHHHHHhcCCccEEEECcccHHH
Confidence 4568999999976433 5799999999999995 4453 22223466778899999999988883333
No 14
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.14 E-value=0.0038 Score=45.10 Aligned_cols=62 Identities=8% Similarity=-0.034 Sum_probs=44.5
Q ss_pred HHHHhcCcEEEecCCCccc--hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849 46 LIMAKKCRVILNCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 46 ~~~~~~~dvVIn~~GPf~~--~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~ 112 (138)
.++++++|+||+|++|... ...+..+.+++.|+..+|++..+... .+.+++++.|+.+++|-
T Consensus 76 ~~~~~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-----~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 76 EELLAEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-----PLLKEARALGAKTIDGL 139 (155)
T ss_pred hhccccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-----HHHHHHHHCCCceeCCH
Confidence 3447899999999976553 12344467789999999997765433 44577888898887753
No 15
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.99 E-value=0.023 Score=41.74 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc---hhHHHHHHHHHcCC-Cee
Q psy12849 29 VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW---YGEAVVKACIEAKT-HHV 81 (138)
Q Consensus 29 ~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~---~~~~v~~Aci~~g~-hYv 81 (138)
..++++++.|+.|++++.+.++++|+|++++||-.. .-..++++|-++|+ ++|
T Consensus 38 ~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v 94 (183)
T PF13460_consen 38 SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVV 94 (183)
T ss_dssp CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEE
T ss_pred ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccccccccccccccccccce
Confidence 468999999999999999999999999999987443 13467777777776 444
No 16
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.82 E-value=0.021 Score=46.36 Aligned_cols=89 Identities=9% Similarity=0.033 Sum_probs=61.5
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh----HHH-HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG----EAV-VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESE 105 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~----~~v-~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~g 105 (138)
+..+..+|+++.+++.+.++.+|++|||. |-.-.+ .++ -...+..+...+|+...|.-+ .|-..|+++|
T Consensus 179 ~~~~~~~d~~~~~~~~~~~~~~DilINaT-p~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G 252 (289)
T PRK12548 179 ECIVNVYDLNDTEKLKAEIASSDILVNAT-LVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKT-----KLLEDAEAAG 252 (289)
T ss_pred CceeEEechhhhhHHHhhhccCCEEEEeC-CCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCC-----HHHHHHHHCC
Confidence 34566789988888999999999999999 432211 122 234567778899998876543 3336789999
Q ss_pred CEEEeCCCCccchHhHHHHHHHHHhhh
Q psy12849 106 VCVVSACGIETLPIDMGVLMLQDSFEG 132 (138)
Q Consensus 106 v~iv~~~G~d~~p~dl~~~~~~~~~~~ 132 (138)
..++.|.+ |+.+.++.+|+=
T Consensus 253 ~~~~~G~~-------ML~~Qa~~~f~l 272 (289)
T PRK12548 253 CKTVGGLG-------MLLWQGAEAYKL 272 (289)
T ss_pred CeeeCcHH-------HHHHHHHHHHHH
Confidence 99888765 455555555543
No 17
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=95.79 E-value=0.034 Score=38.73 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
+.++++ ..|+||.|+++ .......+.+++.|+|.|-.+=..-.-.....++.+.|+++|+.+.
T Consensus 51 ~~~~~~~~~~dvvVE~t~~--~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 51 LEELIDDPDIDVVVECTSS--EAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHHHTHTT-SEEEE-SSC--HHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHHHhcCcCCCEEEECCCc--hHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 556666 79999999765 3446789999999999999854432211233577788999998775
No 18
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.67 E-value=0.025 Score=45.63 Aligned_cols=51 Identities=12% Similarity=0.219 Sum_probs=45.0
Q ss_pred ceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch-hHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKK--CRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi 83 (138)
..+..+..|.+++.+++++ .++||+++.||... ...+.++|.+.|.+|+..
T Consensus 45 ~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 45 LTVHTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred ceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3566788899999999986 79999999999944 789999999999999987
No 19
>PLN02214 cinnamoyl-CoA reductase
Probab=95.66 E-value=0.03 Score=45.96 Aligned_cols=49 Identities=16% Similarity=0.153 Sum_probs=40.6
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch-----------hHHHHHHHHHcCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY-----------GEAVVKACIEAKT 78 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~-----------~~~v~~Aci~~g~ 78 (138)
.+++++..|+.|++++.++++++|+|||++||+... -..++++|.+.|+
T Consensus 60 ~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v 119 (342)
T PLN02214 60 ERLILCKADLQDYEALKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKV 119 (342)
T ss_pred CcEEEEecCcCChHHHHHHHhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357788999999999999999999999999987431 2357888888875
No 20
>KOG1502|consensus
Probab=95.48 E-value=0.032 Score=46.69 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=42.6
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhH---------------HHHHHHHHcC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGE---------------AVVKACIEAK 77 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~---------------~v~~Aci~~g 77 (138)
+++.....|+.|++++.+.++|||.|+++|-|+..... .|+++|.++.
T Consensus 57 ~~l~l~~aDL~d~~sf~~ai~gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 57 ERLKLFKADLLDEGSFDKAIDGCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred ccceEEeccccccchHHHHHhCCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC
Confidence 45899999999999999999999999999999876432 6899999988
No 21
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=95.21 E-value=0.068 Score=45.01 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCcceEEeeCCCHHHHHHHHh----cCcEEEecCCCccc-----------hhHHHHHHHHHcCCC-eeeCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK----KCRVILNCVGPYTW-----------YGEAVVKACIEAKTH-HVDIT 84 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~----~~dvVIn~~GPf~~-----------~~~~v~~Aci~~g~h-YvDis 84 (138)
.+++++++|+.|++++.++++ ++|+||||+|+... ....++++|.+.|+. +|=+|
T Consensus 111 ~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iS 181 (390)
T PLN02657 111 PGAEVVFGDVTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLS 181 (390)
T ss_pred CCceEEEeeCCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 367899999999999999999 58999999986321 124688999999875 54443
No 22
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=95.12 E-value=0.079 Score=42.55 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=47.7
Q ss_pred hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccc
Q psy12849 50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETL 117 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~ 117 (138)
...|+|+.|++|- .+ ...++.|+++|+|.+-.+-..-.-......+.+.|+++|..+....|+..+
T Consensus 60 ~~~DvVve~t~~~-~~-~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg 125 (265)
T PRK13303 60 QRPDLVVECAGHA-AL-KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGG 125 (265)
T ss_pred cCCCEEEECCCHH-HH-HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhC
Confidence 5689999999775 34 589999999999999754321011222345667899999999998887544
No 23
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.06 E-value=0.096 Score=42.29 Aligned_cols=65 Identities=9% Similarity=0.126 Sum_probs=47.8
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
+.++++++|+|+-|+++ ..+ ..+++.|+++|.|.+..+-. .. .+. .++-+.|+++|..+....||
T Consensus 61 ~eell~~~D~Vvi~tp~-~~h-~e~~~~aL~aGk~Vi~~s~g-al-~~~-~~L~~~A~~~g~~l~v~sGa 125 (271)
T PRK13302 61 LDQLATHADIVVEAAPA-SVL-RAIVEPVLAAGKKAIVLSVG-AL-LRN-EDLIDLARQNGGQIIVPTGA 125 (271)
T ss_pred HHHHhcCCCEEEECCCc-HHH-HHHHHHHHHcCCcEEEecch-hH-HhH-HHHHHHHHHcCCEEEEcchH
Confidence 44556789999999955 445 57889999999999976422 11 122 36668899999999887776
No 24
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.99 E-value=0.1 Score=41.47 Aligned_cols=67 Identities=9% Similarity=0.073 Sum_probs=49.3
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC----ChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg----e~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
+|.++|.+ .+.|+|+-|++|.. + ...+..|+++|.|.+=.+- +....++ +-+.|+++|..+....|+
T Consensus 28 ~d~~eLl~--~~vDaVviatp~~~-H-~e~a~~aL~aGkhVl~~s~gAlad~e~~~~----l~~aA~~~g~~l~i~sGa 98 (229)
T TIGR03855 28 SDFDEFLP--EDVDIVVEAASQEA-V-KEYAEKILKNGKDLLIMSVGALADRELRER----LREVARSSGRKVYIPSGA 98 (229)
T ss_pred CCHHHHhc--CCCCEEEECCChHH-H-HHHHHHHHHCCCCEEEECCcccCCHHHHHH----HHHHHHhcCCEEEEChHH
Confidence 35444432 57999999996654 4 4789999999999987654 4445444 447899999999998775
No 25
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.92 E-value=0.078 Score=41.68 Aligned_cols=52 Identities=4% Similarity=-0.080 Sum_probs=40.3
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHc--CCCeee
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEA--KTHHVD 82 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~--g~hYvD 82 (138)
+++++.+|+.|++++.+++++ +|+||||+|+.... ...++++|.+. +..+|=
T Consensus 51 ~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~ 122 (317)
T TIGR01181 51 RYRFVKGDIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHH 122 (317)
T ss_pred CcEEEEcCCcCHHHHHHHHhhcCCCEEEEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEE
Confidence 578899999999999999998 89999999975421 13578889885 334543
No 26
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.45 E-value=0.054 Score=44.15 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=46.8
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
+++.+.++++|+|+||+ |........++ .++.++-.+|++..+.-+ .| +.|++.|+..+..-|
T Consensus 201 ~~l~~~l~~aDiVint~-P~~ii~~~~l~-~~k~~aliIDlas~Pg~t-----df-~~Ak~~G~~a~~~~g 263 (287)
T TIGR02853 201 NKLEEKVAEIDIVINTI-PALVLTADVLS-KLPKHAVIIDLASKPGGT-----DF-EYAKKRGIKALLAPG 263 (287)
T ss_pred HHHHHHhccCCEEEECC-ChHHhCHHHHh-cCCCCeEEEEeCcCCCCC-----CH-HHHHHCCCEEEEeCC
Confidence 45778889999999999 76654444443 457789999998876443 34 568999999997666
No 27
>PLN02427 UDP-apiose/xylose synthase
Probab=94.33 E-value=0.096 Score=43.41 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=41.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc---ch-------------hHHHHHHHHHcCCCeeeCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT---WY-------------GEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~---~~-------------~~~v~~Aci~~g~hYvDis 84 (138)
.+++++..|+.|.+.+.++++++|+||||++... .. ..+++++|.+.|...|=+|
T Consensus 65 ~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~S 135 (386)
T PLN02427 65 GRIQFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFS 135 (386)
T ss_pred CCeEEEEcCCCChHHHHHHhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3688999999999999999999999999997321 00 2356788887776665443
No 28
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=94.22 E-value=0.072 Score=43.74 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=39.4
Q ss_pred eeCCCHHHHHHHHhcC--cEEEecCCCccch-----------------hHHHHHHHHHcCCCeeeCC
Q psy12849 37 VNTINESSILIMAKKC--RVILNCVGPYTWY-----------------GEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 37 ~D~~d~~~L~~~~~~~--dvVIn~~GPf~~~-----------------~~~v~~Aci~~g~hYvDis 84 (138)
+|+.|++.+.+++++. |+||||+ .|... ...++++|-+.|..+|=+|
T Consensus 34 ~Ditd~~~v~~~i~~~~PDvVIn~A-Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiS 99 (281)
T COG1091 34 LDITDPDAVLEVIRETRPDVVINAA-AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHIS 99 (281)
T ss_pred ccccChHHHHHHHHhhCCCEEEECc-cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEee
Confidence 7999999999999975 9999999 66532 2368999999998887766
No 29
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.12 E-value=0.033 Score=44.83 Aligned_cols=74 Identities=16% Similarity=0.124 Sum_probs=51.2
Q ss_pred HHHHhcCcEEEecCCCccchh----HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849 46 LIMAKKCRVILNCVGPYTWYG----EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM 121 (138)
Q Consensus 46 ~~~~~~~dvVIn~~GPf~~~~----~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl 121 (138)
...+.++|+||||. |-...+ .++...++..+...+|+...|.-+ .|-++|+++|..++.|.+ |
T Consensus 180 ~~~~~~~DivInaT-p~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T-----~ll~~A~~~G~~~~~G~~-------M 246 (278)
T PRK00258 180 QEELADFDLIINAT-SAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPT-----PFLAWAKAQGARTIDGLG-------M 246 (278)
T ss_pred hhccccCCEEEECC-cCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCC-----HHHHHHHHCcCeecCCHH-------H
Confidence 45667899999999 554332 245567888899999998865433 444679999999887655 4
Q ss_pred HHHHHHHHhhh
Q psy12849 122 GVLMLQDSFEG 132 (138)
Q Consensus 122 ~~~~~~~~~~~ 132 (138)
+.+.+..+|+-
T Consensus 247 l~~Qa~~~f~~ 257 (278)
T PRK00258 247 LVHQAAEAFEL 257 (278)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
No 30
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=93.54 E-value=0.24 Score=39.24 Aligned_cols=48 Identities=15% Similarity=0.289 Sum_probs=38.7
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch--------------hHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY--------------GEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~ 78 (138)
+++++..|+.|++++.++++++|+|||+++++... ...++++|.+.++
T Consensus 44 ~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 105 (328)
T TIGR03466 44 DVEIVEGDLRDPASLRKAVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNLLRAALEAGV 105 (328)
T ss_pred CceEEEeeCCCHHHHHHHHhCCCEEEEeceecccCCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 57889999999999999999999999999764211 1456788888764
No 31
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=93.53 E-value=0.25 Score=40.21 Aligned_cols=54 Identities=9% Similarity=0.089 Sum_probs=41.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC-CeeeC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHVDI 83 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYvDi 83 (138)
.++.++.+|+.|++++.++++++|+|||++|.... -...++++|.+.|+ +.|=+
T Consensus 53 ~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~ 123 (324)
T TIGR03589 53 PCLRFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVAL 123 (324)
T ss_pred CcEEEEEccCCCHHHHHHHHhcCCEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 45788999999999999999999999999985321 12367888988875 44443
No 32
>KOG2865|consensus
Probab=93.52 E-value=0.14 Score=42.95 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=44.2
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc------------chhHHHHHHHHHcCCC-eee
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT------------WYGEAVVKACIEAKTH-HVD 82 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~------------~~~~~v~~Aci~~g~h-YvD 82 (138)
.++-+...|+.|+++|+++++.+.||||.+|--+ ...+++++.|-++|+- ||-
T Consensus 109 GQvl~~~fd~~DedSIr~vvk~sNVVINLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIh 174 (391)
T KOG2865|consen 109 GQVLFMKFDLRDEDSIRAVVKHSNVVINLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIH 174 (391)
T ss_pred cceeeeccCCCCHHHHHHHHHhCcEEEEeeccccccCCcccccccchHHHHHHHHHHhhChhheee
Confidence 5778899999999999999999999999999522 2357899999999974 444
No 33
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.36 E-value=0.23 Score=44.61 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=41.2
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--------------hhHHHHHHHHHcCC-CeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW--------------YGEAVVKACIEAKT-HHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--------------~~~~v~~Aci~~g~-hYvDi 83 (138)
++.++.+|+.|.+++.+.+.++|+||||+|.... -...++++|.+.|+ ++|=+
T Consensus 139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~V 206 (576)
T PLN03209 139 KLEIVECDLEKPDQIGPALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILV 206 (576)
T ss_pred ceEEEEecCCCHHHHHHHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5789999999999999999999999999996421 12467788887774 44443
No 34
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.34 E-value=0.088 Score=42.78 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHHHHhcCcEEEecC--CCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHH
Q psy12849 45 ILIMAKKCRVILNCV--GPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMG 122 (138)
Q Consensus 45 L~~~~~~~dvVIn~~--GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~ 122 (138)
+.+.++++|+||||. |.+.....++-...+..+.-.+|+...|.-+ .|-..|+++|..++.|.+ |+
T Consensus 186 ~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T-----~ll~~A~~~G~~~~~G~~-------ML 253 (284)
T PRK12549 186 LAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET-----ELLRAARALGCRTLDGGG-------MA 253 (284)
T ss_pred hHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC-----HHHHHHHHCCCeEecCHH-------HH
Confidence 455678899999994 4221111233334566777889998876443 333678999999988765 55
Q ss_pred HHHHHHHhhhh
Q psy12849 123 VLMLQDSFEGH 133 (138)
Q Consensus 123 ~~~~~~~~~~~ 133 (138)
.+.++.+|+-=
T Consensus 254 ~~Qa~~~f~~w 264 (284)
T PRK12549 254 VFQAVDAFELF 264 (284)
T ss_pred HHHHHHHHHHh
Confidence 55555555543
No 35
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=93.27 E-value=0.2 Score=39.50 Aligned_cols=50 Identities=4% Similarity=-0.089 Sum_probs=40.3
Q ss_pred CCcceEEeeCCCHHHHHHHH------hc-CcEEEecCCCccc---hhHHHHHHHHHcCCC
Q psy12849 30 RTNRTTVVNTINESSILIMA------KK-CRVILNCVGPYTW---YGEAVVKACIEAKTH 79 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~------~~-~dvVIn~~GPf~~---~~~~v~~Aci~~g~h 79 (138)
..++.+.+|..|+++|.+.+ ++ +|.|+.+.++... ....++++|.++|+.
T Consensus 39 ~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~ 98 (285)
T TIGR03649 39 PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPDLAPPMIKFIDFARSKGVR 98 (285)
T ss_pred CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCCCChhHHHHHHHHHHHHcCCC
Confidence 35667889999999999999 57 9999999976432 345789999999974
No 36
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.90 E-value=0.33 Score=39.78 Aligned_cols=49 Identities=8% Similarity=-0.142 Sum_probs=40.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKT 78 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~ 78 (138)
.++.++..|+.|.+.+.++++++|+|||+++.... ...+++++|.+.|+
T Consensus 69 ~~~~~~~~Di~d~~~l~~~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~ 133 (348)
T PRK15181 69 SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHV 133 (348)
T ss_pred CceEEEEccCCCHHHHHHHhhCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35778999999999999999999999999974221 01378999999987
No 37
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=92.62 E-value=0.13 Score=41.38 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf 62 (138)
.+++++..|+.|++++.++++++|+|||++||+
T Consensus 56 ~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~~~ 88 (322)
T PLN02986 56 ERLKLFKADLLEESSFEQAIEGCDAVFHTASPV 88 (322)
T ss_pred CceEEEecCCCCcchHHHHHhCCCEEEEeCCCc
Confidence 467889999999999999999999999999985
No 38
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.48 E-value=0.14 Score=40.87 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=47.9
Q ss_pred hcCcEEEecCCCccchh----HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 50 KKCRVILNCVGPYTWYG----EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~----~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
.++|+||||+ |....+ .++....++.+...+|++..++-+ .+-++|+++|..++.|.+ |+.+.
T Consensus 177 ~~~DivInat-p~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-----~ll~~A~~~G~~~vdG~~-------Ml~~Q 243 (270)
T TIGR00507 177 HRVDLIINAT-SAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-----PFLAEAKSLGTKTIDGLG-------MLVAQ 243 (270)
T ss_pred cCccEEEECC-CCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-----HHHHHHHHCCCeeeCCHH-------HHHHH
Confidence 4789999999 543221 123345678899999998887654 345779999999987665 45555
Q ss_pred HHHHhhh
Q psy12849 126 LQDSFEG 132 (138)
Q Consensus 126 ~~~~~~~ 132 (138)
+..+|+=
T Consensus 244 a~~~f~~ 250 (270)
T TIGR00507 244 AALAFEL 250 (270)
T ss_pred HHHHHHH
Confidence 5555543
No 39
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.30 E-value=0.23 Score=38.99 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=37.4
Q ss_pred HHhhhhcCC-CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc
Q psy12849 21 LQKASWFGV-RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT 63 (138)
Q Consensus 21 ~~~a~~~~~-~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~ 63 (138)
.|.++++.. ..+.+++-|+.|.+++.+.+.++|+||++.|+..
T Consensus 31 vRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~ 74 (211)
T COG2910 31 VRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGA 74 (211)
T ss_pred EeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCC
Confidence 456666665 7788999999999999999999999999999874
No 40
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.30 E-value=0.12 Score=42.29 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=44.0
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
+++.+.++++|+||||+++ ....+..+ ..++.|.-.+|++..+.-+ .+ +.+++.|++++..-|
T Consensus 202 ~~l~~~l~~aDiVI~t~p~-~~i~~~~l-~~~~~g~vIIDla~~pggt-----d~-~~a~~~Gv~~~~~~~ 264 (296)
T PRK08306 202 SELAEEVGKIDIIFNTIPA-LVLTKEVL-SKMPPEALIIDLASKPGGT-----DF-EYAEKRGIKALLAPG 264 (296)
T ss_pred HHHHHHhCCCCEEEECCCh-hhhhHHHH-HcCCCCcEEEEEccCCCCc-----Ce-eehhhCCeEEEEECC
Confidence 3577888999999999944 33333332 3356799999998876543 23 467889999985555
No 41
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=92.23 E-value=0.41 Score=37.66 Aligned_cols=48 Identities=6% Similarity=-0.035 Sum_probs=37.6
Q ss_pred CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch----------------hHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY----------------GEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~ 78 (138)
++.++.+|+.+++++.++++ +.|+||+|+|+.... ...++++|.+.|+
T Consensus 48 ~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 113 (328)
T TIGR01179 48 RVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGV 113 (328)
T ss_pred ceEEEECCCCCHHHHHHHHHhCCCcEEEECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCC
Confidence 46688999999999999997 689999999964211 2466788888774
No 42
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.96 E-value=0.93 Score=32.45 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=35.3
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+....+++++|+||.|...+. .-..+.+.|.+.|++|++....
T Consensus 81 ~~~~~~~~~~diVi~~~d~~~-~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 81 DNLDDFLDGVDLVIDAIDNIA-VRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred hhHHHHhcCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEcCC
Confidence 345788999999999998754 3467899999999999998554
No 43
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.93 E-value=0.66 Score=33.03 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=38.8
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis 84 (138)
+.....++ +++.+.++++++|+||+|.+++. .-..+.+.|.+.|.++|+..
T Consensus 74 v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~~~-~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 74 VEAIPEKI-DEENIEELLKDYDIVIDCVDSLA-ARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp EEEEESHC-SHHHHHHHHHTSSEEEEESSSHH-HHHHHHHHHHHTT-EEEEEE
T ss_pred eeeeeccc-ccccccccccCCCEEEEecCCHH-HHHHHHHHHHHcCCCEEEEE
Confidence 44444444 56788999999999999998754 33578889999999999874
No 44
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=91.92 E-value=0.37 Score=40.07 Aligned_cols=50 Identities=10% Similarity=0.013 Sum_probs=39.3
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-----------------hhHHHHHHHHHcCC-Cee
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTW-----------------YGEAVVKACIEAKT-HHV 81 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-----------------~~~~v~~Aci~~g~-hYv 81 (138)
.+++..|+.|.+.+.++++++|+||||++++.. ....++++|.+.|+ .+|
T Consensus 66 ~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V 133 (370)
T PLN02695 66 HEFHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF 133 (370)
T ss_pred ceEEECCCCCHHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 467888999999999999999999999976420 12468899999886 443
No 45
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=91.77 E-value=0.46 Score=38.12 Aligned_cols=50 Identities=22% Similarity=0.116 Sum_probs=38.1
Q ss_pred eEEeeCCCHHHHHHHHhc--CcEEEecCCCccch----------------hHHHHHHHHHcCCCeeeC
Q psy12849 34 TTVVNTINESSILIMAKK--CRVILNCVGPYTWY----------------GEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 34 ~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~----------------~~~v~~Aci~~g~hYvDi 83 (138)
.+..|+.|.+.+.+++++ .|+||||++..... ...++++|.+.|+.+|=+
T Consensus 35 ~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~ 102 (299)
T PRK09987 35 DYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHY 102 (299)
T ss_pred cccCCCCCHHHHHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 345699999999999994 79999999864311 135889999988777643
No 46
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.57 E-value=0.12 Score=36.83 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
+++.++++.+|++|.+.-|... ...++.|++.|++.|= .||-.+.-. ..+.+.+++ +.++.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~--~~~~~~~~~~g~~~ViGTTG~~~~~~---~~l~~~a~~--~~vl~ 120 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAV--YDNLEYALKHGVPLVIGTTGFSDEQI---DELEELAKK--IPVLI 120 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHH--HHHHHHHHHHT-EEEEE-SSSHHHHH---HHHHHHTTT--SEEEE
T ss_pred hhHHHhcccCCEEEEcCChHHh--HHHHHHHHhCCCCEEEECCCCCHHHH---HHHHHHhcc--CCEEE
Confidence 4688899999999999987544 5789999999999986 667654432 244454544 55544
No 47
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.56 E-value=0.21 Score=40.04 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=29.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf 62 (138)
.++.++..|+.|++++.++++++|+|||++|+.
T Consensus 56 ~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~~~ 88 (325)
T PLN02989 56 ERLKLFKADLLDEGSFELAIDGCETVFHTASPV 88 (325)
T ss_pred CceEEEeCCCCCchHHHHHHcCCCEEEEeCCCC
Confidence 467889999999999999999999999999974
No 48
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.53 E-value=0.42 Score=37.40 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=36.7
Q ss_pred EeeCCCHHHHHHHHhcC--cEEEecCCCccc----------------hhHHHHHHHHHcCCCeeeC
Q psy12849 36 VVNTINESSILIMAKKC--RVILNCVGPYTW----------------YGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 36 ~~D~~d~~~L~~~~~~~--dvVIn~~GPf~~----------------~~~~v~~Aci~~g~hYvDi 83 (138)
..|+.|++++.++++++ |+||||+|+... ....++++|.+.|.++|=+
T Consensus 33 ~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~ 98 (287)
T TIGR01214 33 QLDLTDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHI 98 (287)
T ss_pred ccCCCCHHHHHHHHHhCCCCEEEECCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 57999999999999987 999999987421 1346777888877666543
No 49
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.52 E-value=0.51 Score=38.36 Aligned_cols=52 Identities=25% Similarity=0.179 Sum_probs=40.6
Q ss_pred CCcceEEeeCC-CHHHHHHHHhcCcEEEecCCCccc---------------h-hHHHHHHHHHcCCCee
Q psy12849 30 RTNRTTVVNTI-NESSILIMAKKCRVILNCVGPYTW---------------Y-GEAVVKACIEAKTHHV 81 (138)
Q Consensus 30 ~~~~~~~~D~~-d~~~L~~~~~~~dvVIn~~GPf~~---------------~-~~~v~~Aci~~g~hYv 81 (138)
.+++++..|+. +.+.+.++++++|+||+|++.... . ...++++|.+.|.++|
T Consensus 46 ~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v 114 (347)
T PRK11908 46 PRMHFFEGDITINKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLV 114 (347)
T ss_pred CCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 46889999997 778899999999999999873211 0 1367999999887766
No 50
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=91.40 E-value=0.2 Score=39.94 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=38.6
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHc-CC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEA-KT 78 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~-g~ 78 (138)
.+++++..|+.|++++.++++++|.|||++||+... ...++++|.+. ++
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~ 119 (322)
T PLN02662 55 ERLHLFKANLLEEGSFDSVVDGCEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSV 119 (322)
T ss_pred CceEEEeccccCcchHHHHHcCCCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 367889999999999999999999999999985321 12467778776 54
No 51
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=91.37 E-value=0.39 Score=36.07 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=39.9
Q ss_pred CcceEEeeCCCHHHHHHHHhcC--cEEEecCCCcc----------------chhHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKC--RVILNCVGPYT----------------WYGEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GPf~----------------~~~~~v~~Aci~~g~ 78 (138)
++++...|+.|.+.+.+++++. |+|++++|+.. .....++++|.+.|+
T Consensus 43 ~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~ 108 (236)
T PF01370_consen 43 NVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV 108 (236)
T ss_dssp TEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeccccccccccccccCceEEEEeeccccccccccccccccccccccccccccccccccc
Confidence 6789999999999999999998 99999999852 112367788888887
No 52
>PRK06182 short chain dehydrogenase; Validated
Probab=91.07 E-value=0.39 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.177 Sum_probs=28.7
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.++++ +.|++||++|+.
T Consensus 46 ~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 46 LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 357889999999999999887 679999999864
No 53
>PRK06179 short chain dehydrogenase; Provisional
Probab=91.07 E-value=0.29 Score=38.03 Aligned_cols=33 Identities=12% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++++ .|++|||+|+.
T Consensus 45 ~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag~~ 84 (270)
T PRK06179 45 PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAGVG 84 (270)
T ss_pred CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 4678999999999999999986 59999999975
No 54
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=91.07 E-value=0.38 Score=39.21 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHhcCcEEEecCCCccchh---HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYG---EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM 121 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~---~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl 121 (138)
+...+.++|+||||. |-.-.+ .++-...+..+.-.+|+...|.-+ .|-..|+++|..++.|.+ |
T Consensus 188 ~~~~~~~~divINaT-p~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~-------M 254 (283)
T PRK14027 188 IEDVIAAADGVVNAT-PMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET-----ELLKAARALGCETLDGTR-------M 254 (283)
T ss_pred HHHHHhhcCEEEEcC-CCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCC-----HHHHHHHHCCCEEEccHH-------H
Confidence 444567899999998 543221 133334566677789998876443 333578899999988766 4
Q ss_pred HHHHHHHHhhh
Q psy12849 122 GVLMLQDSFEG 132 (138)
Q Consensus 122 ~~~~~~~~~~~ 132 (138)
+.+.++.+|+-
T Consensus 255 Lv~Qa~~~f~l 265 (283)
T PRK14027 255 AIHQAVDAFRL 265 (283)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 55
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=90.99 E-value=1.7 Score=35.55 Aligned_cols=63 Identities=11% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHH-HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC-C---ChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 45 ILIM-AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT-G---EPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 45 L~~~-~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis-g---e~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
+.++ ....|+||.|+||-.. ....+.+++.|+|.+=+| | |..+. .++.+.|++.|-.+..-.|
T Consensus 55 l~~ll~~~~DlVVE~A~~~av--~e~~~~iL~~g~dlvv~SvGALaD~~~~----~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 55 LPGLLAWRPDLVVEAAGQQAI--AEHAEGCLTAGLDMIICSAGALADDALR----ARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred HHHHhhcCCCEEEECCCHHHH--HHHHHHHHhcCCCEEEEChhHhcCHHHH----HHHHHHHHhCCCEEEEeCh
Confidence 5665 4679999999998554 567899999999999876 3 44444 4556889999988888888
No 56
>PLN00198 anthocyanidin reductase; Provisional
Probab=90.85 E-value=0.3 Score=39.51 Aligned_cols=32 Identities=13% Similarity=0.207 Sum_probs=29.3
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf 62 (138)
+++++..|+.|++++.++++++|.|||++||.
T Consensus 60 ~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 91 (338)
T PLN00198 60 DLKIFGADLTDEESFEAPIAGCDLVFHVATPV 91 (338)
T ss_pred ceEEEEcCCCChHHHHHHHhcCCEEEEeCCCC
Confidence 57888999999999999999999999999964
No 57
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.83 E-value=0.91 Score=37.04 Aligned_cols=77 Identities=12% Similarity=0.058 Sum_probs=49.7
Q ss_pred HHHHHHHhcCcEEEecCCCccchh---H-HH-HHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccc
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYG---E-AV-VKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETL 117 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~---~-~v-~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~ 117 (138)
+.+...+.++|+||||. |-.-.+ . ++ -...+..+...+|+...|.-+ .|-.+|+++|...++|.+
T Consensus 188 ~~l~~~~~~aDivINaT-p~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~---- 257 (288)
T PRK12749 188 QAFAEALASADILTNGT-KVGMKPLENESLVNDISLLHPGLLVTECVYNPHMT-----KLLQQAQQAGCKTIDGYG---- 257 (288)
T ss_pred hhhhhhcccCCEEEECC-CCCCCCCCCCCCCCcHHHCCCCCEEEEecCCCccC-----HHHHHHHHCCCeEECCHH----
Confidence 34556677899999999 543221 1 11 123456677788998876543 444678999999988765
Q ss_pred hHhHHHHHHHHHhhh
Q psy12849 118 PIDMGVLMLQDSFEG 132 (138)
Q Consensus 118 p~dl~~~~~~~~~~~ 132 (138)
|+.+.+..+|+-
T Consensus 258 ---ML~~Qa~~~f~l 269 (288)
T PRK12749 258 ---MLLWQGAEQFTL 269 (288)
T ss_pred ---HHHHHHHHHHHH
Confidence 455555555553
No 58
>PLN02240 UDP-glucose 4-epimerase
Probab=90.74 E-value=0.73 Score=37.21 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=39.8
Q ss_pred CCcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHcCC-Ceee
Q psy12849 30 RTNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKT-HHVD 82 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~-hYvD 82 (138)
.++.++.+|+.|++++.++++ ++|.||||+|.... ....++++|.+.|+ ++|=
T Consensus 58 ~~~~~~~~D~~~~~~l~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 129 (352)
T PLN02240 58 DNLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVF 129 (352)
T ss_pred ccceEEecCcCCHHHHHHHHHhCCCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 357889999999999999987 58999999984321 12367889988875 4443
No 59
>PRK06270 homoserine dehydrogenase; Provisional
Probab=90.42 E-value=1.8 Score=36.01 Aligned_cols=66 Identities=14% Similarity=0.041 Sum_probs=47.0
Q ss_pred HHHHHHh--cCcEEEecCCCccc---hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 44 SILIMAK--KCRVILNCVGPYTW---YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 44 ~L~~~~~--~~dvVIn~~GPf~~---~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
++.+++. ..|+||.|.+|... .+...++.|+++|+|.|-.+ ..+....+ .++.+.|+++|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaN-K~pla~~~-~eL~~~A~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSN-KGPLALAY-KELKELAKKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCC-cHHHHhhH-HHHHHHHHHcCCEEEEe
Confidence 3445553 58999999976432 23578899999999999764 33443343 47778899999988754
No 60
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.39 E-value=0.41 Score=36.12 Aligned_cols=62 Identities=10% Similarity=-0.069 Sum_probs=44.1
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYM 93 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~ 93 (138)
..+...+|..+.+++.+.++++|+||++. |.........+.+.+.+.-.+|+..-++....+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~diVi~at-~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~ 138 (194)
T cd01078 77 GEGVGAVETSDDAARAAAIKGADVVFAAG-AAGVELLEKLAWAPKPLAVAADVNAVPPVGIEG 138 (194)
T ss_pred CCcEEEeeCCCHHHHHHHHhcCCEEEECC-CCCceechhhhcccCceeEEEEccCCCCCCccc
Confidence 34566788899999999999999999987 665532233333444577899997776665443
No 61
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=90.22 E-value=0.66 Score=37.24 Aligned_cols=52 Identities=10% Similarity=0.149 Sum_probs=43.3
Q ss_pred cceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch-hHHHHHHHHHcCCCeeeC
Q psy12849 32 NRTTVVNTINESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi 83 (138)
.+++.--+.+.+++.++++ +.++||++.=||... ...+.++|-+.|.+|+=.
T Consensus 44 ~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 44 GPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred ceEEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 3444444459999999999 579999999999855 689999999999999875
No 62
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.08 E-value=1.7 Score=36.19 Aligned_cols=73 Identities=5% Similarity=-0.100 Sum_probs=50.5
Q ss_pred HHHHH--hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhH
Q psy12849 45 ILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDM 121 (138)
Q Consensus 45 L~~~~--~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl 121 (138)
+.+++ ..+|+||+|.+|- ....+.+.|++.|+|.|-.+=. +.... ..++.+.|+++|+.+....++..+..-+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~--~a~~~~~~al~~G~~VVtanK~-~la~~-~~el~~la~~~~~~~~~ea~v~~GiPii 157 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK--NAHEWHLEALKEGKSVVTSNKP-PIAFH-YDELLDLANERNLPYLFEATVMAGTPII 157 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH--HHHHHHHHHHhhCCcEEECCHH-HHHhC-HHHHHHHHHHcCCeEEEeccccccCCch
Confidence 44555 3699999999763 4578999999999999976422 12222 2366678899999999776654343333
No 63
>KOG1205|consensus
Probab=89.97 E-value=0.72 Score=37.91 Aligned_cols=103 Identities=17% Similarity=0.167 Sum_probs=60.8
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccchhHHHHHHHHHcCCCeee--CCCChHHHHHHHHHhHHHH
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD--ITGEPYFMEYMQYEYNTRA 101 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD--isge~~~~~~~~~~~~~~A 101 (138)
++..+++|++|.+++.++++ +.|++||-||=.. . ...-..-++.=.+-+| +-|....++.....+.+
T Consensus 64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~-~-~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~-- 139 (282)
T KOG1205|consen 64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISL-V-GFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKK-- 139 (282)
T ss_pred ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEecCcccc-c-cccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhh--
Confidence 59999999999999997763 5799999999544 2 2222222222122233 23444555554322221
Q ss_pred HhCCCEEEeC--CCCccchHh-HHH--HHHHHHhhhhcCCC
Q psy12849 102 QESEVCVVSA--CGIETLPID-MGV--LMLQDSFEGHSGKE 137 (138)
Q Consensus 102 ~~~gv~iv~~--~G~d~~p~d-l~~--~~~~~~~~~~~~~~ 137 (138)
+..|-.++.+ +|+.+.|.. +.. .++...|.++|-.|
T Consensus 140 r~~GhIVvisSiaG~~~~P~~~~Y~ASK~Al~~f~etLR~E 180 (282)
T KOG1205|consen 140 RNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQE 180 (282)
T ss_pred cCCCeEEEEeccccccCCCcccccchHHHHHHHHHHHHHHH
Confidence 1135544444 788888875 222 58888887776544
No 64
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.82 E-value=1.5 Score=34.17 Aligned_cols=50 Identities=10% Similarity=0.151 Sum_probs=38.3
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
++.+...+ +++.+.++++++|+||+|.+.+. .-..+-+.|.+.|+++|+.
T Consensus 93 i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~~-~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 93 IEAYNERL-DAENAEELIAGYDLVLDCTDNFA-TRYLINDACVKLGKPLVSG 142 (228)
T ss_pred EEEeccee-CHHHHHHHHhCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 33333344 45678889999999999998654 3457889999999999995
No 65
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=89.65 E-value=1.2 Score=35.41 Aligned_cols=103 Identities=10% Similarity=0.047 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcC
Q psy12849 8 QKLTADILKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAK 77 (138)
Q Consensus 8 ~~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g 77 (138)
|.|.+|-.++-..++.-.+ ...+++.+|+.| +.-+.++-+..+..++|= ---...++.++.++++|
T Consensus 9 SILsaD~~~l~~el~~~~~---agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvH-LMV~~p~~~i~~fa~ag 84 (220)
T COG0036 9 SILSADFARLGEELKALEA---AGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVH-LMVENPDRYIEAFAKAG 84 (220)
T ss_pred ehhhCCHhHHHHHHHHHHH---cCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEE-EecCCHHHHHHHHHHhC
Confidence 5677888777555554443 356899999998 455666655555555442 11112367899999999
Q ss_pred CCeeeCCCCh-HHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 78 THHVDITGEP-YFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 78 ~hYvDisge~-~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
++||-+=-|. +-..+++....+.-.++|+.+-|++-+
T Consensus 85 ad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~ 122 (220)
T COG0036 85 ADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPL 122 (220)
T ss_pred CCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCH
Confidence 9999986662 223333333334444556666665554
No 66
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=89.60 E-value=0.76 Score=37.97 Aligned_cols=44 Identities=20% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 68 AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 68 ~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
-=+.||+++||.||..+-...... -.+.+.|+++|+.++---|=
T Consensus 191 ~YA~AAl~~g~~fvN~tP~~~a~~---P~l~ela~~~gvpi~GdD~K 234 (295)
T PF07994_consen 191 LYAYAALEAGVPFVNGTPSNIADD---PALVELAEEKGVPIAGDDGK 234 (295)
T ss_dssp HHHHHHHHTTEEEEE-SSSTTTTS---HHHHHHHHHHTEEEEESSBS
T ss_pred HHHHHHHHCCCCeEeccCccccCC---HHHHHHHHHcCCCeecchHh
Confidence 347899999999999765544311 13446788899998766554
No 67
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.60 E-value=0.58 Score=35.39 Aligned_cols=34 Identities=9% Similarity=0.039 Sum_probs=29.6
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~ 63 (138)
.++.++++|+.|++++.++++ ++|+|||++|++.
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 94 (237)
T PRK07326 54 GNVLGLAADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGH 94 (237)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 467889999999999998887 5899999999864
No 68
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=89.49 E-value=1.2 Score=37.71 Aligned_cols=67 Identities=13% Similarity=0.104 Sum_probs=46.3
Q ss_pred HHHHHHHHhc--CcEEEecCCCccch--hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849 42 ESSILIMAKK--CRVILNCVGPYTWY--GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 42 ~~~L~~~~~~--~dvVIn~~GPf~~~--~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~ 112 (138)
++.+.+.++. .||+||-. |-... .+-=+.||+++||.||..+-..-. .. .++.++++++|+.++---
T Consensus 112 ~~dv~~~lk~~~~dVlvnyl-PvGs~~A~~~YA~AAl~aG~afVN~~P~~ia--~~-p~~a~~f~e~glPi~GDD 182 (351)
T TIGR03450 112 PVDVVQALKDAKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPVFIA--SD-PEWAKKFTDAGVPIVGDD 182 (351)
T ss_pred HHHHHHHHHhcCCCEEEECC-ccchHHHHHHHHHHHHHcCCceEeccCcccc--CC-HHHHHHHHHCCCCEeccc
Confidence 3456666765 89999988 76543 334577999999999997553222 22 256677889999976543
No 69
>PRK09186 flagellin modification protein A; Provisional
Probab=89.16 E-value=0.55 Score=35.96 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=27.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.+.++++|+.|++++.+++++ .|+|||++|+.
T Consensus 56 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~~id~vi~~A~~~ 94 (256)
T PRK09186 56 KLSLVELDITDQESLEEFLSKSAEKYGKIDGAVNCAYPR 94 (256)
T ss_pred ceeEEEecCCCHHHHHHHHHHHHHHcCCccEEEECCccc
Confidence 456779999999999999886 69999999864
No 70
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=89.13 E-value=0.74 Score=36.21 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=36.1
Q ss_pred EEeeCCCHHHHHHHHhc--CcEEEecCCCccc-----------------hhHHHHHHHHHcCC-Cee
Q psy12849 35 TVVNTINESSILIMAKK--CRVILNCVGPYTW-----------------YGEAVVKACIEAKT-HHV 81 (138)
Q Consensus 35 ~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~-----------------~~~~v~~Aci~~g~-hYv 81 (138)
...|+.|.+++.++++. .|+||||++++.. ....++++|.+.|+ ++|
T Consensus 31 ~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i 97 (306)
T PLN02725 31 KELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLL 97 (306)
T ss_pred ccCCCCCHHHHHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEE
Confidence 46899999999999885 5999999986421 12358999999886 344
No 71
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=89.08 E-value=2.1 Score=33.45 Aligned_cols=89 Identities=13% Similarity=0.218 Sum_probs=59.3
Q ss_pred hhhcCCCCcceEEeeCCCHHH---HHHHHhcC-cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHH
Q psy12849 24 ASWFGVRTNRTTVVNTINESS---ILIMAKKC-RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNT 99 (138)
Q Consensus 24 a~~~~~~~~~~~~~D~~d~~~---L~~~~~~~-dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~ 99 (138)
++.+-...+..+.+..+.+.. +.++.+++ +++|-+ | +.....-++.++++|.+|+=.-+ +..++. +
T Consensus 26 ~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGA-G--TVl~~~~a~~a~~aGA~FivsP~---~~~~v~----~ 95 (204)
T TIGR01182 26 AKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGA-G--TVLNPEQLRQAVDAGAQFIVSPG---LTPELA----K 95 (204)
T ss_pred HHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEE-E--eCCCHHHHHHHHHcCCCEEECCC---CCHHHH----H
Confidence 444433567788888877655 44555554 455443 3 44456779999999999993322 233333 5
Q ss_pred HHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 100 RAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 100 ~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
.+++.|+..+|||- .|+++...+
T Consensus 96 ~~~~~~i~~iPG~~---TptEi~~A~ 118 (204)
T TIGR01182 96 HAQDHGIPIIPGVA---TPSEIMLAL 118 (204)
T ss_pred HHHHcCCcEECCCC---CHHHHHHHH
Confidence 68899999999987 788887653
No 72
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=88.99 E-value=0.5 Score=38.34 Aligned_cols=33 Identities=3% Similarity=0.000 Sum_probs=29.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCcc
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYT 63 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~ 63 (138)
+++++.+|+.|.+++.+++++ +|.||||+|+..
T Consensus 52 ~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~ 86 (355)
T PRK10217 52 RFAFEKVDICDRAELARVFTEHQPDCVMHLAAESH 86 (355)
T ss_pred ceEEEECCCcChHHHHHHHhhcCCCEEEECCcccC
Confidence 567889999999999999995 899999999753
No 73
>PRK06349 homoserine dehydrogenase; Provisional
Probab=88.97 E-value=1.6 Score=37.47 Aligned_cols=64 Identities=14% Similarity=0.132 Sum_probs=46.9
Q ss_pred HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
+.+++. ..|+|+.|.|+.. .....++.|+++|.|.|-..- +.....-.++.+.|+++|+.+.-.
T Consensus 64 ~~~ll~d~~iDvVve~tg~~~-~~~~~~~~aL~~GkhVVtaNK--~~~a~~~~eL~~lA~~~gv~l~fE 129 (426)
T PRK06349 64 PEELVNDPDIDIVVELMGGIE-PARELILKALEAGKHVVTANK--ALLAVHGAELFAAAEEKGVDLYFE 129 (426)
T ss_pred HHHHhhCCCCCEEEECCCCch-HHHHHHHHHHHCCCeEEEcCH--HHHHHHHHHHHHHHHHcCCcEEEE
Confidence 455665 4799999998754 446899999999999996543 333333357778899999987744
No 74
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=88.75 E-value=1.2 Score=35.66 Aligned_cols=51 Identities=12% Similarity=0.215 Sum_probs=42.5
Q ss_pred ceEEeeCCCHHHHHHHHh--cCcEEEecCCCccch-hHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAK--KCRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi 83 (138)
+++.=-+.+.+.+.++|+ +.++||++.=||... ...+.++|-+.|.+|+=.
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 444444449999999997 589999999999855 689999999999999763
No 75
>PLN02686 cinnamoyl-CoA reductase
Probab=88.43 E-value=1.1 Score=37.12 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=36.7
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh----------------HHHHHHHHHc
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG----------------EAVVKACIEA 76 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~----------------~~v~~Aci~~ 76 (138)
++.++..|+.|++++.++++++|.|++++++....+ ..++++|.+.
T Consensus 108 ~~~~v~~Dl~d~~~l~~~i~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~ 169 (367)
T PLN02686 108 GIWTVMANLTEPESLHEAFDGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT 169 (367)
T ss_pred ceEEEEcCCCCHHHHHHHHHhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence 467889999999999999999999999998642211 2478888775
No 76
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=88.37 E-value=0.7 Score=37.15 Aligned_cols=49 Identities=14% Similarity=0.268 Sum_probs=32.4
Q ss_pred EeeCCCHHHHHHHHhc--CcEEEecCCCcc----------------chhHHHHHHHHHcCCCeeeCC
Q psy12849 36 VVNTINESSILIMAKK--CRVILNCVGPYT----------------WYGEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 36 ~~D~~d~~~L~~~~~~--~dvVIn~~GPf~----------------~~~~~v~~Aci~~g~hYvDis 84 (138)
.+|+.|.+++.+++++ .|+||||+|-.. .....++++|.+.|+++|=+|
T Consensus 34 ~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~S 100 (286)
T PF04321_consen 34 DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHIS 100 (286)
T ss_dssp CS-TTSHHHHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEE
T ss_pred hcCCCCHHHHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEee
Confidence 7789999999999986 799999996321 112378999999999886543
No 77
>PLN02253 xanthoxin dehydrogenase
Probab=88.16 E-value=0.79 Score=35.84 Aligned_cols=32 Identities=9% Similarity=0.038 Sum_probs=28.3
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++++|+.|++++.++++ +.|++||++|.
T Consensus 66 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 66 PNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGL 104 (280)
T ss_pred CceEEEEeecCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 467899999999999999888 57999999985
No 78
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=87.92 E-value=2.1 Score=34.62 Aligned_cols=64 Identities=11% Similarity=0.100 Sum_probs=48.3
Q ss_pred HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC----ChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG----EPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg----e~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
+|.+++...|+++-|++|-. -...+.-++++|+||+=+|= |+.+ .+++.+.|+..|..+-.-.|
T Consensus 53 ~ide~~~~~DlvVEaAS~~A--v~e~~~~~L~~g~d~iV~SVGALad~~l----~erl~~lak~~~~rv~~pSG 120 (255)
T COG1712 53 DIDELIAEVDLVVEAASPEA--VREYVPKILKAGIDVIVMSVGALADEGL----RERLRELAKCGGARVYLPSG 120 (255)
T ss_pred cHHHHhhccceeeeeCCHHH--HHHHhHHHHhcCCCEEEEechhccChHH----HHHHHHHHhcCCcEEEecCc
Confidence 36777899999999998743 35778889999999987532 4344 34566888888888877666
No 79
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.87 E-value=4.5 Score=31.68 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=58.4
Q ss_pred hhhcCCCCcceEEeeCCCHH---HHHHHHhcC----cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHH
Q psy12849 24 ASWFGVRTNRTTVVNTINES---SILIMAKKC----RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYE 96 (138)
Q Consensus 24 a~~~~~~~~~~~~~D~~d~~---~L~~~~~~~----dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~ 96 (138)
++.+-...+..+.+-++.+. .+.++.+.. +++|-+. +.....-++.|+++|..|+=.-+ +..++.
T Consensus 31 ~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaG---TV~~~~~~~~a~~aGA~FivsP~---~~~~v~-- 102 (213)
T PRK06552 31 SLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAG---TVLDAVTARLAILAGAQFIVSPS---FNRETA-- 102 (213)
T ss_pred HHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeee---eCCCHHHHHHHHHcCCCEEECCC---CCHHHH--
Confidence 33333356677777776664 455565554 5666554 44445678999999999986422 233333
Q ss_pred hHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 97 YNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 97 ~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
+.++++|+.++||+. .|+++...+
T Consensus 103 --~~~~~~~i~~iPG~~---T~~E~~~A~ 126 (213)
T PRK06552 103 --KICNLYQIPYLPGCM---TVTEIVTAL 126 (213)
T ss_pred --HHHHHcCCCEECCcC---CHHHHHHHH
Confidence 457889999999998 777776543
No 80
>PRK09134 short chain dehydrogenase; Provisional
Probab=87.80 E-value=0.62 Score=36.00 Aligned_cols=33 Identities=9% Similarity=0.234 Sum_probs=28.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|.+++.+++++ .|+||||+|+.
T Consensus 59 ~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~iD~vi~~ag~~ 98 (258)
T PRK09134 59 RRAVALQADLADEAEVRALVARASAALGPITLLVNNASLF 98 (258)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCcCC
Confidence 3577899999999999988875 59999999964
No 81
>PRK05865 hypothetical protein; Provisional
Probab=87.77 E-value=1.5 Score=41.15 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=43.3
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-------hhHHHHHHHHHcCC-CeeeCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-------YGEAVVKACIEAKT-HHVDITG 85 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------~~~~v~~Aci~~g~-hYvDisg 85 (138)
++.++..|+.|.+++.++++++|+||||+++... -...++++|.+.|+ +.|=+|.
T Consensus 41 ~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv~GT~nLLeAa~~~gvkr~V~iSS 103 (854)
T PRK05865 41 SADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINIDGTANVLKAMAETGTGRIVFTSS 103 (854)
T ss_pred CceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence 5778999999999999999999999999986421 12467899999886 4555543
No 82
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=87.68 E-value=1.4 Score=35.75 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=60.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccch-hHHHHHHHHHcCCCeeeC-------CCC-hHHHHHHHHHhHH
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTWY-GEAVVKACIEAKTHHVDI-------TGE-PYFMEYMQYEYNT 99 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvDi-------sge-~~~~~~~~~~~~~ 99 (138)
..+.+..-.-+.+.|.++++. .+++|++.=||..- ..+.+++|-++|+.|+=. .|+ +..+.++. +.-+
T Consensus 44 ~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~-ea~~ 122 (257)
T COG2099 44 IGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIE-EAAE 122 (257)
T ss_pred cCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHH-HHHH
Confidence 345777788899999999995 79999999999844 789999999999999753 122 11123332 4445
Q ss_pred HHHhCCCEEEeCCCC
Q psy12849 100 RAQESEVCVVSACGI 114 (138)
Q Consensus 100 ~A~~~gv~iv~~~G~ 114 (138)
.+++.|-.++...|-
T Consensus 123 ~~~~~~~rVflt~G~ 137 (257)
T COG2099 123 AAKQLGRRVFLTTGR 137 (257)
T ss_pred HHhccCCcEEEecCc
Confidence 556667778877773
No 83
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=87.67 E-value=3 Score=28.34 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 45 ILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 45 L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
+.++++ +.|+|+-|. |...+ .++++.|++.|.|.+= ++-...-.+ ++-+.++++|+.+..
T Consensus 54 ~~~ll~~~~~D~V~I~t-p~~~h-~~~~~~~l~~g~~v~~EKP~~~~~~~~~----~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIAT-PPSSH-AEIAKKALEAGKHVLVEKPLALTLEEAE----ELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEES-SGGGH-HHHHHHHHHTTSEEEEESSSSSSHHHHH----HHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEec-CCcch-HHHHHHHHHcCCEEEEEcCCcCCHHHHH----HHHHHHHHhCCEEEE
Confidence 556666 689999999 54555 4789999999997653 333433333 444778888887654
No 84
>PLN00016 RNA-binding protein; Provisional
Probab=87.55 E-value=0.68 Score=38.39 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=36.8
Q ss_pred CcceEEeeCCCHHHHHHHH--hcCcEEEecCCCccchhHHHHHHHHHcCC-Cee
Q psy12849 31 TNRTTVVNTINESSILIMA--KKCRVILNCVGPYTWYGEAVVKACIEAKT-HHV 81 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~--~~~dvVIn~~GPf~~~~~~v~~Aci~~g~-hYv 81 (138)
.++++..|+.| +.+++ .++|+||++.|.......+++++|.+.|+ ++|
T Consensus 111 ~v~~v~~D~~d---~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V 161 (378)
T PLN00016 111 GVKTVWGDPAD---VKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFL 161 (378)
T ss_pred CceEEEecHHH---HHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 47788888876 44444 47999999998765556789999999998 565
No 85
>PRK05884 short chain dehydrogenase; Provisional
Probab=87.40 E-value=0.88 Score=34.80 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHh----cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK----KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~----~~dvVIn~~GPf 62 (138)
+..++++|+.|++++.++++ ..|++||++||.
T Consensus 45 ~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~ 80 (223)
T PRK05884 45 DVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS 80 (223)
T ss_pred cCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence 35788999999999998887 479999999874
No 86
>PRK07856 short chain dehydrogenase; Provisional
Probab=87.38 E-value=0.7 Score=35.56 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=28.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf 62 (138)
.++.++++|+.+++++.+++++. |+|||++|..
T Consensus 47 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 86 (252)
T PRK07856 47 RPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVNNAGGS 86 (252)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 35778999999999999888764 9999999853
No 87
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.38 E-value=1 Score=34.40 Aligned_cols=32 Identities=19% Similarity=0.142 Sum_probs=28.5
Q ss_pred CcceEEeeCCCHHHHHHHHh-cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-~~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+.+. +.|+|||++|+.
T Consensus 52 ~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag~~ 84 (257)
T PRK09291 52 ALRVEKLDLTDAIDRAQAAEWDVDVLLNNAGIG 84 (257)
T ss_pred cceEEEeeCCCHHHHHHHhcCCCCEEEECCCcC
Confidence 57889999999999999887 799999999853
No 88
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=87.33 E-value=0.9 Score=36.86 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=38.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW----------------YGEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~ 78 (138)
+++++.+|+.|.+++.+++++ .|+||||+++... -...++++|.+.|+
T Consensus 56 ~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~ 121 (343)
T TIGR01472 56 RMKLHYGDLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGL 121 (343)
T ss_pred ceeEEEeccCCHHHHHHHHHhCCCCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999996 5999999985220 01468899998875
No 89
>PRK08267 short chain dehydrogenase; Provisional
Probab=87.23 E-value=0.73 Score=35.56 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=28.2
Q ss_pred CCcceEEeeCCCHHHHHHHHhc--------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK--------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++++ .|+||||+|..
T Consensus 48 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK08267 48 GNAWTGALDVTDRAAWDAALADFAAATGGRLDVLFNNAGIL 88 (260)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEEECCCCC
Confidence 4688999999999999988774 49999999964
No 90
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=87.23 E-value=0.75 Score=38.93 Aligned_cols=78 Identities=13% Similarity=0.209 Sum_probs=51.4
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH-----H------------------HHHHHh
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM-----E------------------YMQYEY 97 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~-----~------------------~~~~~~ 97 (138)
|++.+ ...+||+|+-|. |- -.+..++..-++.|+.-||+|++.-+- + .+-+-+
T Consensus 62 ~~~~~--~~~~~DvvFlal-Ph-g~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~ 137 (349)
T COG0002 62 DPEKI--ELDECDVVFLAL-PH-GVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELH 137 (349)
T ss_pred Chhhh--hcccCCEEEEec-Cc-hhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccC
Confidence 44444 456799999999 74 455788999999999999999984442 1 111112
Q ss_pred HHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849 98 NTRAQESEVCVVSACGIETLPIDMGVL 124 (138)
Q Consensus 98 ~~~A~~~gv~iv~~~G~d~~p~dl~~~ 124 (138)
.++.+.+.....|||= |.-+.+...
T Consensus 138 ~e~i~~A~lIAnPGCy--pTa~iLal~ 162 (349)
T COG0002 138 REKIRGAKLIANPGCY--PTAAILALA 162 (349)
T ss_pred HHHHhcCCEeeCCCch--HHHHHHHHH
Confidence 2556666777777764 444444444
No 91
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=87.15 E-value=3.3 Score=29.19 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=49.5
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
+++...+..+.+++.+.++++|++|-..+| .....+++.| .+.-+|-..|... ..+ . -+.|+++|+.+.+.
T Consensus 19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~--~~~~~~l~~~--~~Lk~I~~~~~G~--d~i--d-~~~a~~~gI~V~n~ 89 (133)
T PF00389_consen 19 FEVEFCDSPSEEELAERLKDADAIIVGSGT--PLTAEVLEAA--PNLKLISTAGAGV--DNI--D-LEAAKERGIPVTNV 89 (133)
T ss_dssp SEEEEESSSSHHHHHHHHTTESEEEESTTS--TBSHHHHHHH--TT-SEEEESSSSC--TTB----HHHHHHTTSEEEE-
T ss_pred ceEEEeCCCCHHHHHHHhCCCeEEEEcCCC--CcCHHHHhcc--ceeEEEEEccccc--Ccc--c-HHHHhhCeEEEEEe
Confidence 466677778899999999999999976665 3346788887 4444443322211 110 0 14688899999999
Q ss_pred CCCcc
Q psy12849 112 CGIET 116 (138)
Q Consensus 112 ~G~d~ 116 (138)
-|..+
T Consensus 90 ~g~~~ 94 (133)
T PF00389_consen 90 PGYNA 94 (133)
T ss_dssp TTTTH
T ss_pred CCcCC
Confidence 98533
No 92
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=87.07 E-value=1.3 Score=39.80 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=40.0
Q ss_pred CCcceEEeeCCCHHH-HHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCCCeee
Q psy12849 30 RTNRTTVVNTINESS-ILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~-L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~hYvD 82 (138)
.+++++..|+.|.++ +.++++++|+|||+|+-... -...++++|.++|.++|=
T Consensus 360 ~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~ 429 (660)
T PRK08125 360 PRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIF 429 (660)
T ss_pred CceEEEeccccCcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEE
Confidence 357888999998655 67888999999999973220 014688999999888763
No 93
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.01 E-value=0.7 Score=37.63 Aligned_cols=36 Identities=11% Similarity=0.221 Sum_probs=30.1
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccchh
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTWYG 66 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~~~ 66 (138)
-++.++.+|+++++++.++.. ..|++||+|| |..++
T Consensus 56 v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG-~g~~g 98 (265)
T COG0300 56 VEVEVIPADLSDPEALERLEDELKERGGPIDVLVNNAG-FGTFG 98 (265)
T ss_pred ceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEECCC-cCCcc
Confidence 357899999999999998876 5899999998 55554
No 94
>PLN02650 dihydroflavonol-4-reductase
Probab=86.96 E-value=0.82 Score=37.21 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=37.4
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch---------------hHHHHHHHHHcC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY---------------GEAVVKACIEAK 77 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~---------------~~~v~~Aci~~g 77 (138)
++.++..|+.|.+.+.++++++|.|||++++.... ...++++|.+.+
T Consensus 57 ~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~ 118 (351)
T PLN02650 57 RLTLWKADLAVEGSFDDAIRGCTGVFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAK 118 (351)
T ss_pred ceEEEEecCCChhhHHHHHhCCCEEEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcC
Confidence 57888999999999999999999999999864211 124678888766
No 95
>PRK08219 short chain dehydrogenase; Provisional
Probab=86.94 E-value=1.1 Score=33.56 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=28.6
Q ss_pred CcceEEeeCCCHHHHHHHHh---cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK---KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf 62 (138)
.+.++++|+.|++++.++++ +.|.||+++|+.
T Consensus 48 ~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 48 GATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred cceEEecCCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence 57889999999999999998 489999999974
No 96
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=86.90 E-value=1 Score=34.07 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHh---cCcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAK---KCRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf~ 63 (138)
.++.++++|++|++++.++.+ +.|++||++|...
T Consensus 43 ~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~~~ 79 (235)
T PRK09009 43 DNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLH 79 (235)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcccc
Confidence 467789999999998877655 5799999999754
No 97
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.90 E-value=0.88 Score=34.57 Aligned_cols=34 Identities=6% Similarity=0.068 Sum_probs=29.2
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~ 63 (138)
.++.++.+|+.+++++.++++ +.|+|||++|+..
T Consensus 56 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 96 (239)
T PRK07666 56 VKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGISK 96 (239)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCccEEEEcCcccc
Confidence 367889999999999999887 5899999998753
No 98
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.89 E-value=1 Score=34.32 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=28.3
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|+||||+|..
T Consensus 53 ~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 53 GRAFARQGDVGSAEAVEALVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 357889999999999998876 579999999964
No 99
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=86.84 E-value=1.1 Score=31.43 Aligned_cols=36 Identities=11% Similarity=0.197 Sum_probs=29.9
Q ss_pred hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
+++|+|+.|++. ......+...++.|+.-||++++.
T Consensus 65 ~~~Dvvf~a~~~--~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 65 SDVDVVFLALPH--GASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp TTESEEEE-SCH--HHHHHHHHHHHHTTSEEEESSSTT
T ss_pred hcCCEEEecCch--hHHHHHHHHHhhCCcEEEeCCHHH
Confidence 899999999953 334688999999999999999984
No 100
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=86.81 E-value=1 Score=34.40 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=28.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++++ .|++||++|+.
T Consensus 48 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 48 YPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLVNAAGIL 87 (252)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 3578899999999999998875 69999999965
No 101
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.81 E-value=1 Score=34.68 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=28.6
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~ 63 (138)
.++..+.+|+.|++++.++++ +.|++||++|.+.
T Consensus 58 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~ag~~~ 98 (253)
T PRK05867 58 GKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIIT 98 (253)
T ss_pred CeEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 356788999999999988876 5799999999653
No 102
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.76 E-value=1.2 Score=34.27 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=27.5
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++ +.|++|||+|..
T Consensus 52 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 52 GVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIM 90 (255)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 46789999999999999887 469999999864
No 103
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=86.68 E-value=0.9 Score=36.58 Aligned_cols=33 Identities=6% Similarity=0.054 Sum_probs=28.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|.+++.++++. .|++||++|.+
T Consensus 55 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~li~nAg~~ 94 (322)
T PRK07453 55 DSYTIIHIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVY 94 (322)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 3678899999999999998875 79999999953
No 104
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=86.68 E-value=0.82 Score=38.08 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHH
Q psy12849 48 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYF 89 (138)
Q Consensus 48 ~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~ 89 (138)
..+++|+|+-|+ |...+ ..++..|+++|+|-||.|++..+
T Consensus 65 ~~~~vD~Vf~al-P~~~~-~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 65 ILAGADVVFLAL-PHGVS-MDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred HhcCCCEEEECC-CcHHH-HHHHHHHHhCCCEEEECCcccCC
Confidence 447899999999 54544 58889999999999999998644
No 105
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=86.67 E-value=1.1 Score=37.44 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=33.7
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+..+++++|+|+.|+||+.. ...++.|+++|+..||.+++
T Consensus 72 ~~el~~~vDVVIdaT~~~~~--~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 72 IEDLLEKADIVVDATPGGVG--AKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred hhHhhccCCEEEECCCchhh--HHHHHHHHHCCCEEEEcCCC
Confidence 44556789999999988743 57889999999999999986
No 106
>PRK08643 acetoin reductase; Validated
Probab=86.56 E-value=1 Score=34.52 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++|||+|.+
T Consensus 51 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (256)
T PRK08643 51 GKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVVVNNAGVA 90 (256)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567899999999998888874 69999999864
No 107
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=86.47 E-value=1 Score=36.42 Aligned_cols=32 Identities=0% Similarity=-0.052 Sum_probs=28.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf 62 (138)
+++++..|+.|.+++.+++++ .|+||||+|+.
T Consensus 51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~ 84 (352)
T PRK10084 51 RYVFEHADICDRAELDRIFAQHQPDAVMHLAAES 84 (352)
T ss_pred ceEEEEecCCCHHHHHHHHHhcCCCEEEECCccc
Confidence 467889999999999999985 79999999864
No 108
>PRK11579 putative oxidoreductase; Provisional
Probab=86.44 E-value=5.8 Score=32.58 Aligned_cols=75 Identities=15% Similarity=0.011 Sum_probs=49.1
Q ss_pred HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH---HHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849 44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM---EYMQYEYNTRAQESEVCVVSACGIETLP 118 (138)
Q Consensus 44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~---~~~~~~~~~~A~~~gv~iv~~~G~d~~p 118 (138)
+++++++ +.|+|+-|. |-..+ .+++..|+++|.|-+= |-|+. ++. .++-+.|+++|+.+..+.-.--.|
T Consensus 55 ~~~ell~~~~vD~V~I~t-p~~~H-~~~~~~al~aGkhVl~---EKPla~t~~ea-~~l~~~a~~~g~~l~v~~~~R~~p 128 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPT-PNDTH-FPLAKAALEAGKHVVV---DKPFTVTLSQA-RELDALAKSAGRVLSVFHNRRWDS 128 (346)
T ss_pred CHHHHhcCCCCCEEEEcC-CcHHH-HHHHHHHHHCCCeEEE---eCCCCCCHHHH-HHHHHHHHHhCCEEEEEeeccCCH
Confidence 3566775 579999999 54555 4789999999999872 32221 222 244567888999887665544455
Q ss_pred HhHHHH
Q psy12849 119 IDMGVL 124 (138)
Q Consensus 119 ~dl~~~ 124 (138)
.-..+.
T Consensus 129 ~~~~~k 134 (346)
T PRK11579 129 DFLTLK 134 (346)
T ss_pred HHHHHH
Confidence 544443
No 109
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.39 E-value=3.4 Score=31.73 Aligned_cols=42 Identities=12% Similarity=0.373 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+++.+.++++++|+||.|.+.+. .-.-+-+.|.+.++++|+.
T Consensus 101 ~~~~~~~~~~~~D~Vi~~~d~~~-~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 101 TAENLELLINNVDLVLDCTDNFA-TRYLINDACVALGTPLISA 142 (202)
T ss_pred CHHHHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 44678889999999999997654 3456889999999999985
No 110
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=86.38 E-value=3 Score=32.30 Aligned_cols=47 Identities=11% Similarity=0.189 Sum_probs=34.6
Q ss_pred CcceEEeeCCC-HHHHHHHH-hcCcEEEecCCCccch------------hHHHHHHHHHcC
Q psy12849 31 TNRTTVVNTIN-ESSILIMA-KKCRVILNCVGPYTWY------------GEAVVKACIEAK 77 (138)
Q Consensus 31 ~~~~~~~D~~d-~~~L~~~~-~~~dvVIn~~GPf~~~------------~~~v~~Aci~~g 77 (138)
++.+++.|+.| .+++.+.+ .++|+||+++|+.... ...+++++.+.|
T Consensus 63 ~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~ 123 (251)
T PLN00141 63 SLQIVRADVTEGSDKLVEAIGDDSDAVICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAG 123 (251)
T ss_pred ceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcC
Confidence 57889999988 57788888 6899999999753210 246677777665
No 111
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.36 E-value=1.5 Score=35.51 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=46.3
Q ss_pred HHHHHHHhcCcEEEecCCCccch-hHHHHHHH--------HHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWY-GEAVVKAC--------IEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~-~~~v~~Ac--------i~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
+++...+.++|+||||. |-... ....+..+ +..+...+|+...+.-+ .|-..|+++|..++.|.+
T Consensus 182 ~~~~~~~~~~DiVInaT-p~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~~~Gl~ 255 (282)
T TIGR01809 182 SGGLAIEKAAEVLVSTV-PADVPADYVDLFATVPFLLLKRKSSEGIFLDAAYDPWPT-----PLVAIVSAAGWRVISGLQ 255 (282)
T ss_pred hhhhhcccCCCEEEECC-CCCCCCCHHHhhhhhhhhccccCCCCcEEEEEeeCCCCC-----HHHHHHHHCCCEEECcHH
Confidence 34556668899999998 43322 11212211 23467789998765443 333678889999987665
Q ss_pred CccchHhHHHHHHHHHhh
Q psy12849 114 IETLPIDMGVLMLQDSFE 131 (138)
Q Consensus 114 ~d~~p~dl~~~~~~~~~~ 131 (138)
|+.+....+|+
T Consensus 256 -------MLv~Qa~~~f~ 266 (282)
T TIGR01809 256 -------MLLHQGFAQFE 266 (282)
T ss_pred -------HHHHHHHHHHH
Confidence 45555555544
No 112
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.27 E-value=0.95 Score=34.67 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=27.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++++|+.|++++.+++++ .|+||+|+|..
T Consensus 57 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 57 KAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 567899999999999988875 79999999864
No 113
>PRK06482 short chain dehydrogenase; Provisional
Probab=86.20 E-value=1.1 Score=34.96 Aligned_cols=33 Identities=6% Similarity=0.110 Sum_probs=28.2
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|.+++.+++++ .|+|||++|..
T Consensus 48 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (276)
T PRK06482 48 DRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYG 87 (276)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3678899999999999888764 69999999864
No 114
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=86.06 E-value=2.9 Score=33.47 Aligned_cols=48 Identities=10% Similarity=0.010 Sum_probs=36.9
Q ss_pred CcceEEeeCCCHHHHHHHHh--cCcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAK--KCRVILNCVGPYTW----------------YGEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~ 78 (138)
++.++..|+.|++++.++++ ++|+|||++|.... ....++++|.+.|+
T Consensus 51 ~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~ 116 (338)
T PRK10675 51 HPTFVEGDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANV 116 (338)
T ss_pred CceEEEccCCCHHHHHHHHhcCCCCEEEECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56788999999999999987 58999999973221 11367888888875
No 115
>PRK05866 short chain dehydrogenase; Provisional
Probab=86.00 E-value=1.1 Score=35.91 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=28.0
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++ +.|++|||+|-.
T Consensus 90 ~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 90 DAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 46788999999999999988 679999999854
No 116
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=85.94 E-value=2 Score=38.46 Aligned_cols=48 Identities=6% Similarity=0.040 Sum_probs=37.9
Q ss_pred CCcceEEeeCCCHHHHHHHH--hcCcEEEecCCCccch----------------hHHHHHHHHHcC
Q psy12849 30 RTNRTTVVNTINESSILIMA--KKCRVILNCVGPYTWY----------------GEAVVKACIEAK 77 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~--~~~dvVIn~~GPf~~~----------------~~~v~~Aci~~g 77 (138)
.+++++..|+.|.+.+.+++ .++|+||||+++.... ...++++|.+.|
T Consensus 57 ~~v~~~~~Dl~d~~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~ 122 (668)
T PLN02260 57 PNFKFVKGDIASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTG 122 (668)
T ss_pred CCeEEEECCCCChHHHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46788999999999888776 5799999999975321 135789998877
No 117
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=85.92 E-value=1.1 Score=34.22 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=29.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
++.++.+|+.|++++.+++++ .|+||+|+|.+.
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 96 (247)
T PRK12935 57 DVYAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITR 96 (247)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 578899999999999999987 599999999744
No 118
>PRK06180 short chain dehydrogenase; Provisional
Probab=85.82 E-value=1.8 Score=34.00 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=28.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.+++++ .|+|||++|..
T Consensus 50 ~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 50 DRALARLLDVTDFDAIDAVVADAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred CCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 4678899999999999988884 69999999974
No 119
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=85.82 E-value=1 Score=36.79 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf 62 (138)
.++.++..|+.|.+++.+++++.|.|||++|+.
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~~~ 90 (353)
T PLN02896 58 DRLRLFRADLQEEGSFDEAVKGCDGVFHVAASM 90 (353)
T ss_pred CeEEEEECCCCCHHHHHHHHcCCCEEEECCccc
Confidence 457889999999999999999999999999864
No 120
>PRK06123 short chain dehydrogenase; Provisional
Probab=85.80 E-value=1.4 Score=33.52 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=27.8
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++.+|++|++++.++++ ..|++||++|..
T Consensus 53 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06123 53 EALAVAADVADEADVLRLFEAVDRELGRLDALVNNAGIL 91 (248)
T ss_pred cEEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 46789999999999999887 469999999965
No 121
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=85.74 E-value=2.2 Score=33.61 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=36.5
Q ss_pred eEEeeCCCHHHHHHHHh----cCcEEEecCCCccch--------------hHHHHHHHHHcCCCeeeC
Q psy12849 34 TTVVNTINESSILIMAK----KCRVILNCVGPYTWY--------------GEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 34 ~~~~D~~d~~~L~~~~~----~~dvVIn~~GPf~~~--------------~~~v~~Aci~~g~hYvDi 83 (138)
.+..|+++.+.+..+.+ +.|+||||+|+.... ...++++|.+.+++.|=+
T Consensus 45 ~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~ 112 (314)
T TIGR02197 45 VIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMENNYQYSKRLLDWCAEKGIPFIYA 112 (314)
T ss_pred eeeccCcchhHHHHHHhhccCCCCEEEECccccCccccchHHHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 45668888888887775 799999999864211 135789999988876543
No 122
>PRK07024 short chain dehydrogenase; Provisional
Probab=85.63 E-value=1.1 Score=34.65 Aligned_cols=32 Identities=9% Similarity=0.085 Sum_probs=28.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|++|++++.+++++ .|++||++|..
T Consensus 51 ~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~~ 89 (257)
T PRK07024 51 RVSVYAADVRDADALAAAAADFIAAHGLPDVVIANAGIS 89 (257)
T ss_pred eeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 678999999999999888775 59999999964
No 123
>PRK07454 short chain dehydrogenase; Provisional
Probab=85.58 E-value=1.2 Score=33.80 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=28.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
.++.++.+|++|++++.++++. .|++||++|.+.
T Consensus 55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~~ 95 (241)
T PRK07454 55 VKAAAYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMAY 95 (241)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccC
Confidence 4678899999999998888774 799999999653
No 124
>PLN02583 cinnamoyl-CoA reductase
Probab=85.52 E-value=2.8 Score=33.50 Aligned_cols=47 Identities=26% Similarity=0.447 Sum_probs=37.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccch--------------hHHHHHHHHHc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWY--------------GEAVVKACIEA 76 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~--------------~~~v~~Aci~~ 76 (138)
.+++++..|+.|++++.+.+.+++.|+++++|.... ...++++|.+.
T Consensus 57 ~~~~~~~~Dl~d~~~~~~~l~~~d~v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~ 117 (297)
T PLN02583 57 ERLKVFDVDPLDYHSILDALKGCSGLFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQT 117 (297)
T ss_pred CceEEEEecCCCHHHHHHHHcCCCEEEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 357889999999999999999999999988765421 24678888875
No 125
>PRK12746 short chain dehydrogenase; Provisional
Probab=85.47 E-value=1.3 Score=33.87 Aligned_cols=33 Identities=6% Similarity=0.020 Sum_probs=28.1
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|++||++|..
T Consensus 56 ~~~~~~~~D~~d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 101 (254)
T PRK12746 56 GKAFLIEADLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIG 101 (254)
T ss_pred CcEEEEEcCcCCHHHHHHHHHHHHHHhccccCCCCccEEEECCCCC
Confidence 357789999999999988877 479999999864
No 126
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.43 E-value=6.2 Score=30.83 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=57.9
Q ss_pred hhhcCCCCcceEEeeCCCHHHH---HHHHhcC-cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHH
Q psy12849 24 ASWFGVRTNRTTVVNTINESSI---LIMAKKC-RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNT 99 (138)
Q Consensus 24 a~~~~~~~~~~~~~D~~d~~~L---~~~~~~~-dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~ 99 (138)
++.+-...+..+.+..+.+..+ .++.+++ +++|-+- +.....-++.|+++|.+|+=.-+ +..++. +
T Consensus 22 a~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG---TVl~~e~a~~ai~aGA~FivSP~---~~~~vi----~ 91 (201)
T PRK06015 22 ARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAG---TILNAKQFEDAAKAGSRFIVSPG---TTQELL----A 91 (201)
T ss_pred HHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE---eCcCHHHHHHHHHcCCCEEECCC---CCHHHH----H
Confidence 3333334567777777766544 3334344 4554433 44556779999999999986633 223333 5
Q ss_pred HHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 100 RAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 100 ~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
.|++.|+..+||+- .|+++...+
T Consensus 92 ~a~~~~i~~iPG~~---TptEi~~A~ 114 (201)
T PRK06015 92 AANDSDVPLLPGAA---TPSEVMALR 114 (201)
T ss_pred HHHHcCCCEeCCCC---CHHHHHHHH
Confidence 58899999999998 888887653
No 127
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=85.36 E-value=1.4 Score=33.99 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=28.7
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.+++++.++++ ..|++||++|..
T Consensus 63 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 63 RKVTFVQVDLTKPESAEKVVKEALEEFGKIDILVNNAGTI 102 (258)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 467899999999999999888 469999999864
No 128
>PRK10206 putative oxidoreductase; Provisional
Probab=85.20 E-value=6.5 Score=32.54 Aligned_cols=75 Identities=11% Similarity=-0.017 Sum_probs=49.4
Q ss_pred HHHHHHh--cCcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849 44 SILIMAK--KCRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP 118 (138)
Q Consensus 44 ~L~~~~~--~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p 118 (138)
++.++++ +.|+|+-|. |-..+ ..++..|+++|.|.+= ++-...-.+ ++-+.|+++|+.+..+.-.--.|
T Consensus 55 ~~~ell~~~~iD~V~I~t-p~~~H-~~~~~~al~aGkhVl~EKPla~~~~ea~----~l~~~a~~~~~~l~v~~~~R~~p 128 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCT-HADSH-FEYAKRALEAGKNVLVEKPFTPTLAEAK----ELFALAKSKGLTVTPYQNRRFDS 128 (344)
T ss_pred CHHHHhcCCCCCEEEEeC-CchHH-HHHHHHHHHcCCcEEEecCCcCCHHHHH----HHHHHHHHhCCEEEEEEeeeECH
Confidence 3566675 579999999 65566 4789999999999863 333322233 33467888999987655444455
Q ss_pred HhHHHH
Q psy12849 119 IDMGVL 124 (138)
Q Consensus 119 ~dl~~~ 124 (138)
.-..+.
T Consensus 129 ~~~~~k 134 (344)
T PRK10206 129 CFLTAK 134 (344)
T ss_pred HHHHHH
Confidence 444443
No 129
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=85.03 E-value=1.3 Score=35.80 Aligned_cols=48 Identities=8% Similarity=-0.095 Sum_probs=38.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc----------------hhHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW----------------YGEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~ 78 (138)
+++++.+|+.|.+++.+++++ .|+||||+|.... -...++++|.+.++
T Consensus 61 ~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 61 RMKLHYGDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred ceEEEEecCCCHHHHHHHHHHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999996 5999999986321 02467899988875
No 130
>PRK14851 hypothetical protein; Provisional
Probab=85.03 E-value=3.7 Score=37.59 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=40.0
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-hhHHHHHHHHHcCCCeeeCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-~~~~v~~Aci~~g~hYvDis 84 (138)
+++.+.-.+ +++.+..+++++|+||+|...|.. ....+.+.|.+.|+.+|..+
T Consensus 114 ~I~~~~~~i-~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 114 EITPFPAGI-NADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred eEEEEecCC-ChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 445554455 456789999999999999976532 23468889999999999753
No 131
>PRK06114 short chain dehydrogenase; Provisional
Probab=85.03 E-value=1.1 Score=34.58 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=27.6
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|++||++|..
T Consensus 59 ~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 97 (254)
T PRK06114 59 RAIQIAADVTSKADLRAAVARTEAELGALTLAVNAAGIA 97 (254)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 567889999999999988876 49999999964
No 132
>PRK07890 short chain dehydrogenase; Provisional
Probab=84.92 E-value=1.1 Score=34.32 Aligned_cols=33 Identities=9% Similarity=0.032 Sum_probs=28.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++||++|+.
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 54 RRALAVPTDITDEDQCANLVALALERFGRVDALVNNAFRV 93 (258)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHHcCCccEEEECCccC
Confidence 3578999999999999888764 59999999864
No 133
>PRK06181 short chain dehydrogenase; Provisional
Probab=84.92 E-value=1.5 Score=33.78 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=28.5
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT 63 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~ 63 (138)
++.+..+|+.|++++.++++ +.|+||||+|+..
T Consensus 51 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 51 EALVVPTDVSDAEACERLIEAAVARFGGIDILVNNAGITM 90 (263)
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCccc
Confidence 57788999999999998887 4699999999754
No 134
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=84.91 E-value=1.1 Score=33.02 Aligned_cols=61 Identities=23% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHH-----HHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVK-----ACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~-----Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
+.++++++|+|+.|+ |....-+.++. ..+..|.-+||.+-..|-... +..++.+++|+.++
T Consensus 51 ~~e~~~~~dvvi~~v-~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~---~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 51 PAEAAEQADVVILCV-PDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSR---ELAERLAAKGVRYV 116 (163)
T ss_dssp HHHHHHHBSEEEE-S-SSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHH---HHHHHHHHTTEEEE
T ss_pred hhhHhhcccceEeec-ccchhhhhhhhhhHHhhccccceEEEecCCcchhhhh---hhhhhhhhccceee
Confidence 456667778888888 43322223322 223457788887655444321 33355556665544
No 135
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.90 E-value=1.4 Score=34.03 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|++||++|..
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 58 ARVLAVPADVTDAASVAAAVAAAEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred ceEEEEEccCCCHHHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 357789999999999998887 479999999964
No 136
>PRK12937 short chain dehydrogenase; Provisional
Probab=84.90 E-value=1.3 Score=33.48 Aligned_cols=32 Identities=9% Similarity=0.186 Sum_probs=28.0
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++ +.|++||++|.
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 55 GRAIAVQADVADAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 467889999999999999888 47999999984
No 137
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.80 E-value=1.6 Score=34.49 Aligned_cols=31 Identities=10% Similarity=0.202 Sum_probs=27.0
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.|++++.+++++ .|++||++|.
T Consensus 56 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 56 DVHGVMCDVRHREEVTHLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 567889999999999988875 5999999984
No 138
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.75 E-value=1.1 Score=35.19 Aligned_cols=63 Identities=11% Similarity=0.070 Sum_probs=41.3
Q ss_pred HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCE-EEeCCCC
Q psy12849 44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVC-VVSACGI 114 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~-iv~~~G~ 114 (138)
++.+.++++|++||+.+|.. +.+.+++...+..+.| |++ . |.. +.+-++|++.|.. +..|-++
T Consensus 90 ~l~~~l~~~dvlIgaT~~G~-~~~~~l~~m~~~~ivf-~ls-n-P~~----e~~~~~A~~~ga~i~a~G~~~ 153 (226)
T cd05311 90 TLKEALKGADVFIGVSRPGV-VKKEMIKKMAKDPIVF-ALA-N-PVP----EIWPEEAKEAGADIVATGRSD 153 (226)
T ss_pred CHHHHHhcCCEEEeCCCCCC-CCHHHHHhhCCCCEEE-EeC-C-CCC----cCCHHHHHHcCCcEEEeCCCC
Confidence 35567788999999998655 4456666655655666 776 3 332 2455778888884 6665443
No 139
>PRK09135 pteridine reductase; Provisional
Probab=84.70 E-value=1.2 Score=33.69 Aligned_cols=32 Identities=3% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
..+.++.+|+.|++++.++++. .|+||||+|.
T Consensus 57 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 95 (249)
T PRK09135 57 GSAAALQADLLDPDALPELVAACVAAFGRLDALVNNASS 95 (249)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3578899999999999998885 6999999995
No 140
>PRK08223 hypothetical protein; Validated
Probab=84.69 E-value=3.2 Score=34.21 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=36.0
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-chhHHHHHHHHHcCCCeee
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-~~~~~v~~Aci~~g~hYvD 82 (138)
++.+...+ +++.+.++++++|+||+|...|. ..-..+-++|.+.|+++|.
T Consensus 99 V~~~~~~l-~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~ 149 (287)
T PRK08223 99 IRAFPEGI-GKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALT 149 (287)
T ss_pred EEEEeccc-CccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence 34343334 34557889999999999997552 2335688999999999877
No 141
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=84.68 E-value=1.7 Score=35.70 Aligned_cols=81 Identities=12% Similarity=0.016 Sum_probs=49.2
Q ss_pred HHHHHHHhc-Cc-EEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchH
Q psy12849 43 SSILIMAKK-CR-VILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPI 119 (138)
Q Consensus 43 ~~L~~~~~~-~d-vVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~ 119 (138)
..|..++.. +| |+|+-.-|-... ..++.|++.|+++|= +||- .++-..++ ++++++.++.+--|.-+.-
T Consensus 59 ~~l~~~~~~~~d~VvIDFT~P~~~~--~n~~~~~~~gv~~ViGTTG~---~~~~~~~l---~~~~~i~~l~apNfSiGv~ 130 (275)
T TIGR02130 59 ARIGEVFAKYPELICIDYTHPSAVN--DNAAFYGKHGIPFVMGTTGG---DREALAKL---VADAKHPAVIAPNMAKQIV 130 (275)
T ss_pred ccHHHHHhhcCCEEEEECCChHHHH--HHHHHHHHCCCCEEEcCCCC---CHHHHHHH---HHhcCCCEEEECcccHHHH
Confidence 456777776 89 999999886654 579999999999975 4553 33212233 3334455555555533333
Q ss_pred hHHH--HHHHHHhh
Q psy12849 120 DMGV--LMLQDSFE 131 (138)
Q Consensus 120 dl~~--~~~~~~~~ 131 (138)
.+.. ..+++.|.
T Consensus 131 ll~~~~~~aA~~~~ 144 (275)
T TIGR02130 131 AFLAAIEFLAEEFP 144 (275)
T ss_pred HHHHHHHHHHHhhc
Confidence 2222 35555554
No 142
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=84.65 E-value=4.7 Score=31.99 Aligned_cols=42 Identities=12% Similarity=0.332 Sum_probs=34.9
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+++.+.++++++|+||.|...+.. -..+-++|.+.|+++|.-
T Consensus 104 ~~~~~~~~~~~~DlVvd~~D~~~~-r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 104 DDAELAALIAEHDIVVDCTDNVEV-RNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred CHHHHHHHhhcCCEEEEcCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence 456788899999999999987653 356789999999999974
No 143
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=84.50 E-value=1.1 Score=34.17 Aligned_cols=32 Identities=9% Similarity=0.171 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++. .|+|||++|..
T Consensus 50 ~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~~ 88 (254)
T TIGR02415 50 KAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVA 88 (254)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 578899999999999888764 59999999864
No 144
>PRK06398 aldose dehydrogenase; Validated
Probab=84.49 E-value=1.4 Score=34.18 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=26.8
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|+.|++++.++++ +.|++||++|.
T Consensus 45 ~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~~Ag~ 82 (258)
T PRK06398 45 DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGI 82 (258)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 57789999999999988887 47999999984
No 145
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=84.42 E-value=1.2 Score=36.20 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=47.6
Q ss_pred hcCcEEEecCCCccchh------HHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHH
Q psy12849 50 KKCRVILNCVGPYTWYG------EAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV 123 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~------~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~ 123 (138)
.++|+||||. |-.-.+ .++-...+..+.-.+|+...|.-+ .|-.+|+++|..++.|.+ |+.
T Consensus 177 ~~~dlvINaT-p~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T-----~ll~~A~~~G~~~i~Gl~-------MLi 243 (272)
T PRK12550 177 IEADILVNVT-PIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAET-----PLIRYARARGKTVITGAE-------VIA 243 (272)
T ss_pred ccCCEEEECC-ccccCCCCccccCCCCHHHcCCCCEEEEeecCCccC-----HHHHHHHHCcCeEeCCHH-------HHH
Confidence 4589999998 543221 134345566777789998876443 344678999999987655 555
Q ss_pred HHHHHHhhhhcC
Q psy12849 124 LMLQDSFEGHSG 135 (138)
Q Consensus 124 ~~~~~~~~~~~~ 135 (138)
+.++.+|+-=++
T Consensus 244 ~Qa~~~f~lwtg 255 (272)
T PRK12550 244 LQAVEQFVLYTG 255 (272)
T ss_pred HHHHHHHHHHhC
Confidence 666665554333
No 146
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=84.36 E-value=1.6 Score=33.10 Aligned_cols=33 Identities=9% Similarity=0.265 Sum_probs=28.8
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT 63 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~ 63 (138)
++.++.+|+.|++++.++++ ++|+||+++|.+.
T Consensus 56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 56 KARARQVDVRDRAALKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 47889999999999999887 5799999998754
No 147
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.31 E-value=1.2 Score=34.57 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++++ .|++||++|.+
T Consensus 52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~ag~~ 91 (261)
T PRK08265 52 ERARFIATDITDDAAIERAVATVVARFGRVDILVNLACTY 91 (261)
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3577899999999999888874 59999999954
No 148
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.29 E-value=1.3 Score=34.11 Aligned_cols=33 Identities=12% Similarity=0.117 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.+++.+ .|++||++|..
T Consensus 50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 50 GQVLTVQMDVRNPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 4678899999999999887764 59999999854
No 149
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.29 E-value=1.5 Score=33.10 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=28.8
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|+||+++|+.
T Consensus 55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 55 GDAIAVKADVSSEEDVENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 357889999999999988887 689999999975
No 150
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=84.27 E-value=4.2 Score=33.96 Aligned_cols=51 Identities=6% Similarity=0.013 Sum_probs=39.5
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+++.+..+++ ++.+.++++++|+||.|...|.. -.-+-+.|.+.|+++|-.
T Consensus 97 ~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~~~-r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 97 EIVPVVTDVT-VEELEELVKEVDLIIDATDNFDT-RLLINDLSQKYNIPWIYG 147 (338)
T ss_pred EEEEEeccCC-HHHHHHHhcCCCEEEEcCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence 3455555663 56788999999999999987753 356779999999998864
No 151
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=84.27 E-value=1.7 Score=33.08 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|++|+++|..
T Consensus 52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06947 52 GRACVVAGDVANEADVIAMFDAVQSAFGRLDALVNNAGIV 91 (248)
T ss_pred CcEEEEEeccCCHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 367899999999999887775 479999999964
No 152
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=84.18 E-value=12 Score=29.24 Aligned_cols=94 Identities=7% Similarity=-0.014 Sum_probs=60.1
Q ss_pred HHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCC-Cccc--------------------hhHHHHHHHHHc
Q psy12849 18 FLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVG-PYTW--------------------YGEAVVKACIEA 76 (138)
Q Consensus 18 ~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~G-Pf~~--------------------~~~~v~~Aci~~ 76 (138)
-..++++.+.|-+.+++..-.-.+.+++.+++++..+-+...+ |+.. .-.+.++.|.+.
T Consensus 18 ~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~l 97 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARAL 97 (258)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHHHHHHHHHh
Confidence 3457778888877777544333588999999998877775322 3211 125677888899
Q ss_pred CCCeeeC-CCC-------hH---HHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 77 KTHHVDI-TGE-------PY---FMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 77 g~hYvDi-sge-------~~---~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
|+.+|=+ .|. .. ...+...+..+.|++.|+.+...
T Consensus 98 ga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE 143 (258)
T PRK09997 98 GNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIE 143 (258)
T ss_pred CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999754 232 11 11122235556678899988775
No 153
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.17 E-value=4.7 Score=33.76 Aligned_cols=50 Identities=18% Similarity=0.045 Sum_probs=37.0
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
+++.....+ +++.+.++++++|+||+|..-|.. -.-+-++|.+.++++|-
T Consensus 99 ~v~~~~~~i-~~~~~~~~~~~~DvVvd~~d~~~~-r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 99 KVTVSVRRL-TWSNALDELRDADVILDGSDNFDT-RHLASWAAARLGIPHVW 148 (355)
T ss_pred EEEEEEeec-CHHHHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 344444444 356677899999999999976543 24578999999999986
No 154
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=83.98 E-value=4.7 Score=33.65 Aligned_cols=51 Identities=8% Similarity=0.027 Sum_probs=39.2
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+++....++ +++.+.++++++|+||.|..-|. .-.-+-++|.+.|+++|-.
T Consensus 97 ~v~~~~~~~-~~~~~~~~~~~~DlVid~~Dn~~-~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 97 RVEAIVQDV-TAEELEELVTGVDLIIDATDNFE-TRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred EEEEEeccC-CHHHHHHHHcCCCEEEEcCCCHH-HHHHHHHHHHHhCCCEEEE
Confidence 345555565 45678889999999999998664 3457889999999999864
No 155
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=83.97 E-value=1.7 Score=33.91 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=26.7
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
+..++++|+.|++++.++++. .|++||++|..
T Consensus 60 ~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 60 PSLFLPCDVQDDAQIEETFETIKQKWGKLDILVHCLAFA 98 (258)
T ss_pred cceEeecCcCCHHHHHHHHHHHHHHcCCCCEEEEccccc
Confidence 456889999999999888764 59999999843
No 156
>PRK12939 short chain dehydrogenase; Provisional
Probab=83.90 E-value=1.6 Score=33.09 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=28.1
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.++++ +.|++||++|..
T Consensus 56 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 56 GRAHAIAADLADPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 367889999999999988885 479999999863
No 157
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.89 E-value=1.1 Score=33.96 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=27.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|+||+++|..
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 92 (251)
T PRK07231 54 RAIAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTT 92 (251)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 477999999999999998875 49999999863
No 158
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.78 E-value=1.2 Score=33.45 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=27.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVG 60 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~G 60 (138)
.++.++.+|+.|++++.+++++ .|+|||++|
T Consensus 56 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 93 (249)
T PRK12825 56 RRAQAVQADVTDKAALEAAVAAAVERFGRIDILVNNAG 93 (249)
T ss_pred CceEEEECCcCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 3578899999999999988864 599999998
No 159
>PRK12320 hypothetical protein; Provisional
Probab=83.74 E-value=2.7 Score=38.69 Aligned_cols=54 Identities=11% Similarity=-0.003 Sum_probs=41.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-------h-hHHHHHHHHHcCCCeeeCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-------Y-GEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-------~-~~~v~~Aci~~g~hYvDis 84 (138)
..++++..|+.|+. +.+.++++|+|||++++... . ...++++|.+.|+..|=+|
T Consensus 40 ~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~S 101 (699)
T PRK12320 40 PRVDYVCASLRNPV-LQELAGEADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVS 101 (699)
T ss_pred CCceEEEccCCCHH-HHHHhcCCCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35788999999984 88889999999999975321 1 2468899999987766544
No 160
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.61 E-value=1.7 Score=33.12 Aligned_cols=32 Identities=19% Similarity=0.116 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.+++++ .|+|||++|+
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 54 RKALAVKANVGDVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3578899999999999988874 6999999985
No 161
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=83.56 E-value=1.4 Score=33.98 Aligned_cols=32 Identities=9% Similarity=0.114 Sum_probs=27.6
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++..+++|+.|++++.+++++ .|++||++|..
T Consensus 58 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D~li~~Ag~~ 96 (253)
T PRK08993 58 RFLSLTADLRKIDGIPALLERAVAEFGHIDILVNNAGLI 96 (253)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 567889999999999988874 79999999853
No 162
>PRK06172 short chain dehydrogenase; Provisional
Probab=83.48 E-value=1.3 Score=33.88 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=28.2
Q ss_pred CCcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKC-------RVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++++ |++||++|..
T Consensus 56 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 95 (253)
T PRK06172 56 GEALFVACDVTRDAEVKALVEQTIAAYGRLDYAFNNAGIE 95 (253)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 35788999999999999988764 9999999853
No 163
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=83.48 E-value=1.5 Score=34.00 Aligned_cols=33 Identities=3% Similarity=-0.067 Sum_probs=27.4
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.+++++ .|++||++|.+
T Consensus 51 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 51 DAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3577899999999988887764 59999999864
No 164
>PRK07877 hypothetical protein; Provisional
Probab=83.48 E-value=4.9 Score=37.14 Aligned_cols=54 Identities=7% Similarity=-0.036 Sum_probs=41.0
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+++.+...+ +++.+.++++++|+||+|..=| ..-.-+-++|.+.|.++|--++.
T Consensus 177 ~v~~~~~~i-~~~n~~~~l~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 177 PVEVFTDGL-TEDNVDAFLDGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred EEEEEeccC-CHHHHHHHhcCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCC
Confidence 445555555 4788999999999999999644 33456789999999998876653
No 165
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=83.46 E-value=1.4 Score=36.76 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=32.5
Q ss_pred HHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChH
Q psy12849 47 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 88 (138)
Q Consensus 47 ~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~ 88 (138)
++.+++|+|+-|+ |... ...++..++++|++.||+|++.-
T Consensus 64 ~~~~~~DvVf~al-P~~~-s~~~~~~~~~~G~~VIDlS~~fR 103 (346)
T TIGR01850 64 EIAEDADVVFLAL-PHGV-SAELAPELLAAGVKVIDLSADFR 103 (346)
T ss_pred HhhcCCCEEEECC-CchH-HHHHHHHHHhCCCEEEeCChhhh
Confidence 4446899999999 6554 46888999999999999998743
No 166
>PRK06392 homoserine dehydrogenase; Provisional
Probab=83.45 E-value=6.6 Score=32.74 Aligned_cols=61 Identities=10% Similarity=-0.025 Sum_probs=44.3
Q ss_pred hcCcEEEecCCCccc--hhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849 50 KKCRVILNCVGPYTW--YGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~--~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~ 112 (138)
..+|+||.|++.... .+....+.+++.|.|.|-.+= .+....+ .++.+.|+++|+.+...+
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNK-galA~~~-~eL~~lA~~~g~~~~~ea 142 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANK-SGLANHW-HDIMDSASKNRRIIRYEA 142 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCH-HHHHhhH-HHHHHHHHHcCCeEEEee
Confidence 368999999953321 134566899999999998853 3443333 578889999999999654
No 167
>PRK12744 short chain dehydrogenase; Provisional
Probab=83.44 E-value=3.2 Score=31.96 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++++|+.|++++.++++ +.|++||++|.
T Consensus 62 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 99 (257)
T PRK12744 62 KAVAFQADLTTAAAVEKLFDDAKAAFGRPDIAINTVGK 99 (257)
T ss_pred cEEEEecCcCCHHHHHHHHHHHHHhhCCCCEEEECCcc
Confidence 57889999999999998887 46999999995
No 168
>PRK12367 short chain dehydrogenase; Provisional
Probab=83.34 E-value=1.6 Score=34.27 Aligned_cols=30 Identities=13% Similarity=-0.087 Sum_probs=27.0
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf 62 (138)
.++.+|++|.+++.+.+.+.|++||++|..
T Consensus 61 ~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 61 EWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred eEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 578899999999999999999999999853
No 169
>PRK07814 short chain dehydrogenase; Provisional
Probab=83.33 E-value=1.9 Score=33.50 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.4
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++ +.|+|||++|.
T Consensus 59 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 59 RRAHVVAADLAHPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 357889999999999988776 56999999985
No 170
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=83.18 E-value=6.3 Score=31.88 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=21.1
Q ss_pred hcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
+.-++||+|............+.+.+.|.||+|
T Consensus 84 ~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 84 EKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred CCCCEEEECCCCCcccHHHHHHHHHhcCCeEEe
Confidence 334677777665544445566666677777777
No 171
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=83.18 E-value=1.5 Score=33.89 Aligned_cols=32 Identities=3% Similarity=-0.061 Sum_probs=27.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++++|+.|++++.+++++ .|++||++|++
T Consensus 53 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 53 HVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred cceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCc
Confidence 577899999999999888764 69999999964
No 172
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=83.15 E-value=1.6 Score=33.80 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++||++|.+
T Consensus 59 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 98 (260)
T PRK08416 59 IKAKAYPLNILEPETYKELFKKIDEDFDRVDFFISNAIIS 98 (260)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHhcCCccEEEECcccc
Confidence 3678999999999999888874 69999999853
No 173
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.14 E-value=1.9 Score=33.45 Aligned_cols=33 Identities=9% Similarity=0.014 Sum_probs=27.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.++++. .|++||++|..
T Consensus 55 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 94 (252)
T PRK06079 55 EEDLLVECDVASDESIERAFATIKERVGKIDGIVHAIAYA 94 (252)
T ss_pred CceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEEccccc
Confidence 3567899999999998887653 69999999854
No 174
>PRK12829 short chain dehydrogenase; Provisional
Probab=83.04 E-value=2 Score=32.91 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=27.6
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++ ++|+||+++|+.
T Consensus 59 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 59 KVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIA 97 (264)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 56889999999999988776 579999999965
No 175
>PRK05650 short chain dehydrogenase; Provisional
Probab=82.95 E-value=2 Score=33.42 Aligned_cols=33 Identities=18% Similarity=0.131 Sum_probs=28.2
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.++++ +.|++||++|+.
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 49 GDGFYQRCDVRDYSQLTALAQACEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 357789999999999988886 579999999964
No 176
>PTZ00325 malate dehydrogenase; Provisional
Probab=82.95 E-value=7.7 Score=32.25 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=24.2
Q ss_pred eEEeeCCCHHHHHHHHhcCcEEEecCCCccc
Q psy12849 34 TTVVNTINESSILIMAKKCRVILNCVGPYTW 64 (138)
Q Consensus 34 ~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~ 64 (138)
+...+.+|+.+..+.++++|+||.|+|+...
T Consensus 59 ~~v~~~td~~~~~~~l~gaDvVVitaG~~~~ 89 (321)
T PTZ00325 59 AKVTGYADGELWEKALRGADLVLICAGVPRK 89 (321)
T ss_pred ceEEEecCCCchHHHhCCCCEEEECCCCCCC
Confidence 4455666666667899999999999998655
No 177
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=82.82 E-value=2.1 Score=32.91 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=27.1
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|+.|++++.++++ +.|+|||++|.
T Consensus 47 ~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~ag~ 84 (248)
T PRK10538 47 NLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNAGL 84 (248)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 57889999999999988776 58999999984
No 178
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=82.78 E-value=1.2 Score=34.34 Aligned_cols=31 Identities=13% Similarity=0.048 Sum_probs=26.8
Q ss_pred cceEEeeCCCHHHHHHHHhc----CcEEEecCCCc
Q psy12849 32 NRTTVVNTINESSILIMAKK----CRVILNCVGPY 62 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~----~dvVIn~~GPf 62 (138)
..++++|+.|.+++.+++++ .|++||++|.+
T Consensus 25 ~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~ 59 (241)
T PRK12428 25 DGFIQADLGDPASIDAAVAALPGRIDALFNIAGVP 59 (241)
T ss_pred hHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 35789999999999999984 79999999964
No 179
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.75 E-value=1.4 Score=34.07 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=26.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.|++++.+++++ .|++||++|.
T Consensus 60 ~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 60 RLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 567889999999999887764 5999999985
No 180
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=82.73 E-value=5.9 Score=30.79 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=52.7
Q ss_pred CCcceEEeeCCCHHHHHH---HHhc-CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCC
Q psy12849 30 RTNRTTVVNTINESSILI---MAKK-CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESE 105 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~---~~~~-~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~g 105 (138)
..+..+.+..+.+..+.. +.++ -+++|-+. +.....-++.|+++|..|+=.-+ +..++. +.+++.|
T Consensus 32 gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAG---TV~~~e~a~~a~~aGA~FivSP~---~~~~v~----~~~~~~~ 101 (196)
T PF01081_consen 32 GGIRAIEITLRTPNALEAIEALRKEFPDLLVGAG---TVLTAEQAEAAIAAGAQFIVSPG---FDPEVI----EYAREYG 101 (196)
T ss_dssp TT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEE---S--SHHHHHHHHHHT-SEEEESS-----HHHH----HHHHHHT
T ss_pred CCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEE---eccCHHHHHHHHHcCCCEEECCC---CCHHHH----HHHHHcC
Confidence 467778887776644332 2223 36666444 44556789999999999986633 333333 5688899
Q ss_pred CEEEeCCCCccchHhHHHHH
Q psy12849 106 VCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 106 v~iv~~~G~d~~p~dl~~~~ 125 (138)
+..+||+- .|+++...+
T Consensus 102 i~~iPG~~---TptEi~~A~ 118 (196)
T PF01081_consen 102 IPYIPGVM---TPTEIMQAL 118 (196)
T ss_dssp SEEEEEES---SHHHHHHHH
T ss_pred CcccCCcC---CHHHHHHHH
Confidence 99999998 898887643
No 181
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.73 E-value=2.1 Score=33.05 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=28.3
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++||++|.+
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 55 RKFHFITADLIQQKDIDSIVSQAVEVMGHIDILINNAGII 94 (251)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 3578899999999999998874 69999999854
No 182
>PRK08628 short chain dehydrogenase; Provisional
Probab=82.67 E-value=1.9 Score=33.04 Aligned_cols=32 Identities=9% Similarity=0.088 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.+++++.++++ +.|+|||++|-
T Consensus 55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 55 PRAEFVQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 357899999999999998887 46999999994
No 183
>PRK06194 hypothetical protein; Provisional
Probab=82.56 E-value=1.5 Score=34.24 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=28.0
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|+|||++|..
T Consensus 56 ~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 56 EVLGVRTDVSDAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 567799999999999999885 69999999864
No 184
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.51 E-value=1.6 Score=33.39 Aligned_cols=32 Identities=13% Similarity=0.022 Sum_probs=27.4
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++ ..|++|||+|.
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (256)
T PRK12745 52 VEVIFFPADVADLSAHEAMLDAAQAAWGRIDCLVNNAGV 90 (256)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 367899999999999988877 45999999984
No 185
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.49 E-value=2.2 Score=32.43 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|+||+++|..
T Consensus 53 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 92 (258)
T PRK12429 53 GKAIGVAMDVTDEEAINAGIDYAVETFGGVDILVNNAGIQ 92 (258)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 467889999999999999888 479999999853
No 186
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=82.49 E-value=14 Score=28.49 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=55.0
Q ss_pred ceEEeeCCCHHHHHHHHh-cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC--h-----------HHHHHHHHHhH
Q psy12849 33 RTTVVNTINESSILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE--P-----------YFMEYMQYEYN 98 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~-~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge--~-----------~~~~~~~~~~~ 98 (138)
-.+.+|..+++.+.+.++ +.++++|..| +.. -+.+++.+.+.|+.||=+.-. + ....++...+.
T Consensus 73 ~plSIDT~~~~v~~~aL~~g~~~ind~~~-~~~-~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (210)
T PF00809_consen 73 VPLSIDTFNPEVAEAALKAGADIINDISG-FED-DPEMLPLAAEYGAPVVLMHSDGNPKGMPETADYRLDIAEEIIEFLE 150 (210)
T ss_dssp SEEEEEESSHHHHHHHHHHTSSEEEETTT-TSS-STTHHHHHHHHTSEEEEESESSETTTTTSSHHHSHSHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHcCcceEEeccc-ccc-cchhhhhhhcCCCEEEEEecccccccccccchhhhhHHHHHHHHHH
Confidence 368899999999988877 6899988887 322 357899999999999865444 2 34455554444
Q ss_pred HH---HHhCCC-----EEEeCCCC
Q psy12849 99 TR---AQESEV-----CVVSACGI 114 (138)
Q Consensus 99 ~~---A~~~gv-----~iv~~~G~ 114 (138)
++ +.+.|+ .+=|+.||
T Consensus 151 ~~i~~l~~~Gi~~~~Ii~DPgigf 174 (210)
T PF00809_consen 151 ERIEALEKAGIPRERIILDPGIGF 174 (210)
T ss_dssp HHHHHHHHTT--GGGEEEETTTTS
T ss_pred HHHHHHHHcCCCHHHEeeccccCc
Confidence 42 444677 44466666
No 187
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=82.46 E-value=2 Score=33.20 Aligned_cols=32 Identities=6% Similarity=0.043 Sum_probs=27.4
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++++|+.|++++.++++ ..|++||++|..
T Consensus 49 ~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 49 EVYAVKADLSDKDDLKNLVKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred CceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 57789999999999998886 469999999953
No 188
>PRK07774 short chain dehydrogenase; Provisional
Probab=82.43 E-value=2 Score=32.65 Aligned_cols=31 Identities=19% Similarity=0.127 Sum_probs=26.7
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|+.|++++.++++ ..|+|||++|.
T Consensus 56 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 56 TAIAVQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 56788999999999988877 46999999984
No 189
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=82.39 E-value=10 Score=30.35 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=50.6
Q ss_pred HHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeee---CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccch
Q psy12849 44 SILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVD---ITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP 118 (138)
Q Consensus 44 ~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD---isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p 118 (138)
++.++++. .|+|+-|. |-..+. .++.+|+++|.|-+= ++-...=.+ ++-+.|+++|+.+..+--+--.|
T Consensus 58 ~~~~ll~~~~iD~V~Iat-p~~~H~-e~~~~AL~aGkhVl~EKPla~t~~ea~----~l~~~a~~~~~~l~v~~~~Rf~p 131 (342)
T COG0673 58 DLEELLADPDIDAVYIAT-PNALHA-ELALAALEAGKHVLCEKPLALTLEEAE----ELVELARKAGVKLMVGFNRRFDP 131 (342)
T ss_pred CHHHHhcCCCCCEEEEcC-CChhhH-HHHHHHHhcCCEEEEcCCCCCCHHHHH----HHHHHHHHcCCceeeehhhhcCH
Confidence 36667775 69999999 666664 678999999999763 333322222 44477888899887776555555
Q ss_pred HhHHHH
Q psy12849 119 IDMGVL 124 (138)
Q Consensus 119 ~dl~~~ 124 (138)
.-.-+.
T Consensus 132 ~~~~~k 137 (342)
T COG0673 132 AVQALK 137 (342)
T ss_pred HHHHHH
Confidence 544443
No 190
>PRK12827 short chain dehydrogenase; Provisional
Probab=82.39 E-value=2.2 Score=32.19 Aligned_cols=34 Identities=9% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~ 63 (138)
.++.++.+|+.|++++.++++ +.|.||+++|+..
T Consensus 59 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 99 (249)
T PRK12827 59 GKALGLAFDVRDFAATRAALDAGVEEFGRLDILVNNAGIAT 99 (249)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 467899999999999988875 4799999999754
No 191
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=82.32 E-value=7.7 Score=29.70 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC
Q psy12849 42 ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 42 ~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis 84 (138)
.+....+++++|+||.|..|+. .-..+-+.|.+.++++|..+
T Consensus 104 ~~~~~~~~~~~dvVi~~~d~~~-~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 104 DSNIEEYLQKFTLVIATEENYE-RTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred hhhHHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEE
Confidence 4557788999999999998854 33568899999999999863
No 192
>PRK07478 short chain dehydrogenase; Provisional
Probab=82.20 E-value=2.1 Score=32.84 Aligned_cols=33 Identities=9% Similarity=0.068 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ ..|++||++|..
T Consensus 55 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 55 GEAVALAGDVRDEAYAKALVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 357789999999999998887 469999999853
No 193
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.18 E-value=23 Score=27.94 Aligned_cols=95 Identities=9% Similarity=-0.076 Sum_probs=57.3
Q ss_pred CcceEEe--eCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHc-CCCeeeC--C--CChHHHHHHHHHhHHHHHh
Q psy12849 31 TNRTTVV--NTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDI--T--GEPYFMEYMQYEYNTRAQE 103 (138)
Q Consensus 31 ~~~~~~~--D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~-g~hYvDi--s--ge~~~~~~~~~~~~~~A~~ 103 (138)
++.++.- ...|.+.+.++-+...+-|-.-+-.. ...-++..++. .+++|-+ + |-..-.. +.-+.|++
T Consensus 156 ~i~~iEeP~~~~d~~~~~~l~~~~~ipia~dE~~~--~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~----~~~~~A~~ 229 (265)
T cd03315 156 GLDYVEQPLPADDLEGRAALARATDTPIMADESAF--TPHDAFRELALGAADAVNIKTAKTGGLTKAQ----RVLAVAEA 229 (265)
T ss_pred CCCEEECCCCcccHHHHHHHHhhCCCCEEECCCCC--CHHHHHHHHHhCCCCEEEEecccccCHHHHH----HHHHHHHH
Confidence 3455553 23456777777777666555544322 22335556654 4776543 2 3322222 44477999
Q ss_pred CCCEEEeCCCCccchHhHHHHHHHHHhh
Q psy12849 104 SEVCVVSACGIETLPIDMGVLMLQDSFE 131 (138)
Q Consensus 104 ~gv~iv~~~G~d~~p~dl~~~~~~~~~~ 131 (138)
.|+.+++++.+++..+.....+++..+.
T Consensus 230 ~gi~~~~~~~~~s~i~~~a~~hlaa~~~ 257 (265)
T cd03315 230 LGLPVMVGSMIESGLGTLANAHLAAALR 257 (265)
T ss_pred cCCcEEecCccchHHHHHHHHHHHHhCC
Confidence 9999999988877777777677776554
No 194
>PRK05875 short chain dehydrogenase; Provisional
Probab=82.12 E-value=2 Score=33.40 Aligned_cols=32 Identities=13% Similarity=0.284 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++ +.|++||++|.
T Consensus 58 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (276)
T PRK05875 58 GAVRYEPADVTDEDQVARAVDAATAWHGRLHGVVHCAGG 96 (276)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 467888999999999998887 57999999984
No 195
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=81.96 E-value=2 Score=33.51 Aligned_cols=32 Identities=13% Similarity=0.317 Sum_probs=27.3
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++++|+.|++++.++++ +.|++||++|..
T Consensus 60 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 60 EALAVKADVLDKESLEQARQQILEDFGPCDILINGAGGN 98 (278)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 57788999999999888876 579999999954
No 196
>PRK07577 short chain dehydrogenase; Provisional
Probab=81.95 E-value=2.4 Score=31.85 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=26.6
Q ss_pred ceEEeeCCCHHHHHHHHh------cCcEEEecCCCcc
Q psy12849 33 RTTVVNTINESSILIMAK------KCRVILNCVGPYT 63 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf~ 63 (138)
.++.+|+.|++++.++++ +.|++|||+|...
T Consensus 44 ~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~~ 80 (234)
T PRK07577 44 ELFACDLADIEQTAATLAQINEIHPVDAIVNNVGIAL 80 (234)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHhCCCcEEEECCCCCC
Confidence 678999999999988887 5799999999643
No 197
>PRK07576 short chain dehydrogenase; Provisional
Probab=81.85 E-value=1.6 Score=34.07 Aligned_cols=31 Identities=3% Similarity=-0.001 Sum_probs=26.6
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.|++++.+++++ .|++||++|.
T Consensus 59 ~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~vi~~ag~ 96 (264)
T PRK07576 59 EGLGVSADVRDYAAVEAAFAQIADEFGPIDVLVSGAAG 96 (264)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 457889999999999988876 4999999974
No 198
>PRK07806 short chain dehydrogenase; Provisional
Probab=81.64 E-value=2.4 Score=32.30 Aligned_cols=32 Identities=6% Similarity=0.011 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++ +.|+||+++|..
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (248)
T PRK07806 57 RASAVGADLTDEESVAALMDTAREEFGGLDALVLNASGG 95 (248)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 56788999999999988887 479999999854
No 199
>PRK08264 short chain dehydrogenase; Validated
Probab=81.63 E-value=2.4 Score=32.02 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.+++++ .|+||+++|.
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 49 PRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 3578899999999999999885 6999999997
No 200
>PRK07411 hypothetical protein; Validated
Probab=81.62 E-value=6.1 Score=33.55 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=37.1
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
+++...-.+ +++...++++++|+||+|...+.. -.-+-++|.+.++++|-
T Consensus 109 ~v~~~~~~~-~~~~~~~~~~~~D~Vvd~~d~~~~-r~~ln~~~~~~~~p~v~ 158 (390)
T PRK07411 109 QVDLYETRL-SSENALDILAPYDVVVDGTDNFPT-RYLVNDACVLLNKPNVY 158 (390)
T ss_pred eEEEEeccc-CHHhHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 344444444 345677899999999999987753 24678999999999885
No 201
>PRK08263 short chain dehydrogenase; Provisional
Probab=81.55 E-value=1.8 Score=33.77 Aligned_cols=33 Identities=6% Similarity=0.145 Sum_probs=27.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++++ .|++|||+|..
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 49 DRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred CCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 3567889999999999888774 59999999964
No 202
>PRK07074 short chain dehydrogenase; Provisional
Probab=81.53 E-value=2.8 Score=32.10 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.+++.+ .|+||+++|.
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 87 (257)
T PRK07074 49 ARFVPVACDLTDAASLAAALANAAAERGPVDVLVANAGA 87 (257)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3578899999999999888875 6999999984
No 203
>PRK08328 hypothetical protein; Provisional
Probab=81.40 E-value=8.9 Score=30.09 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=33.2
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
+++.+.++++++|+||+|...+. .-..+-++|.+.|+++|.
T Consensus 108 ~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~ 148 (231)
T PRK08328 108 SEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVH 148 (231)
T ss_pred CHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEE
Confidence 45668889999999999997653 334567889999999987
No 204
>PRK06196 oxidoreductase; Provisional
Probab=81.36 E-value=2.2 Score=34.28 Aligned_cols=32 Identities=13% Similarity=0.256 Sum_probs=27.5
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.+.++.+|+.|.+++.++++ +.|++||++|.+
T Consensus 72 ~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~~ 110 (315)
T PRK06196 72 GVEVVMLDLADLESVRAFAERFLDSGRRIDILINNAGVM 110 (315)
T ss_pred hCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 37889999999999988885 479999999954
No 205
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=81.36 E-value=1.7 Score=33.55 Aligned_cols=32 Identities=6% Similarity=0.014 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++. .|++||++|..
T Consensus 50 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 88 (266)
T PRK06171 50 NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGIN 88 (266)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 567889999999999888774 59999999953
No 206
>PRK06940 short chain dehydrogenase; Provisional
Probab=81.34 E-value=2.1 Score=33.75 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=27.5
Q ss_pred CcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++ ..|++||++|-+
T Consensus 50 ~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~li~nAG~~ 87 (275)
T PRK06940 50 DVSTQEVDVSSRESVKALAATAQTLGPVTGLVHTAGVS 87 (275)
T ss_pred eEEEEEeecCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 56789999999999998886 379999999954
No 207
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=81.26 E-value=1.5 Score=35.99 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=48.6
Q ss_pred cCcEEEecCCCccchhH----HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHHH
Q psy12849 51 KCRVILNCVGPYTWYGE----AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLML 126 (138)
Q Consensus 51 ~~dvVIn~~GPf~~~~~----~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~ 126 (138)
++|++|||. |-...+. ++-..++..+.-..|+-..|.-+ .|-++|+++|..++.|.| |+++.+
T Consensus 190 ~~dliINaT-p~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-----plL~~A~~~G~~~idGl~-------Mlv~Qa 256 (283)
T COG0169 190 EADLLINAT-PVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLET-----PLLREARAQGAKTIDGLG-------MLVHQA 256 (283)
T ss_pred ccCEEEECC-CCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCC-----HHHHHHHHcCCeEECcHH-------HHHHHH
Confidence 689999999 5454442 33457788888888997775433 444679999999877766 555666
Q ss_pred HHHhhhh
Q psy12849 127 QDSFEGH 133 (138)
Q Consensus 127 ~~~~~~~ 133 (138)
+..|+--
T Consensus 257 a~aF~lw 263 (283)
T COG0169 257 AEAFELW 263 (283)
T ss_pred HHHHHHH
Confidence 6666543
No 208
>PRK05693 short chain dehydrogenase; Provisional
Probab=81.21 E-value=4 Score=31.78 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=26.4
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.+.++.+|+.|++++.++++ +.|+|||++|.
T Consensus 45 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 45 GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 46788999999999988875 46999999984
No 209
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.16 E-value=2.2 Score=34.50 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|.+++.++++. .|++||++|.+
T Consensus 65 ~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~iD~li~nAG~~ 104 (313)
T PRK05854 65 AKLSLRALDLSSLASVAALGEQLRAEGRPIHLLINNAGVM 104 (313)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 3578899999999999988875 69999999954
No 210
>PRK06841 short chain dehydrogenase; Provisional
Probab=81.00 E-value=2.6 Score=32.17 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=27.6
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.+++++.+++++ .|++||++|..
T Consensus 61 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 100 (255)
T PRK06841 61 GNAKGLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVA 100 (255)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3456899999999999888874 59999999864
No 211
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.97 E-value=7.8 Score=29.07 Aligned_cols=54 Identities=7% Similarity=0.131 Sum_probs=37.6
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHc-CCCeeeCCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDITGE 86 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~-g~hYvDisge 86 (138)
++....-.+ +++.+.++++++|+||.|...+... ..+.+.|.+. ++.+|--++.
T Consensus 69 ~i~~~~~~~-~~~~~~~~l~~~DlVi~~~d~~~~r-~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 69 KIEAINIKI-DENNLEGLFGDCDIVVEAFDNAETK-AMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred EEEEEEeec-ChhhHHHHhcCCCEEEECCCCHHHH-HHHHHHHHHHCCCCEEEEehh
Confidence 344444444 3466888999999999998755432 4578888888 9999865443
No 212
>PRK07201 short chain dehydrogenase; Provisional
Probab=80.93 E-value=3.6 Score=36.25 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=35.8
Q ss_pred CCcceEEeeCCC------HHHHHHHHhcCcEEEecCCCccch-------------hHHHHHHHHHcCC
Q psy12849 30 RTNRTTVVNTIN------ESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKT 78 (138)
Q Consensus 30 ~~~~~~~~D~~d------~~~L~~~~~~~dvVIn~~GPf~~~-------------~~~v~~Aci~~g~ 78 (138)
.+++++..|+.| .+.+.++ +++|+||||+|.+... ...++++|.+.|+
T Consensus 51 ~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~ 117 (657)
T PRK07201 51 DRVVPLVGDLTEPGLGLSEADIAEL-GDIDHVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQA 117 (657)
T ss_pred CcEEEEecccCCccCCcCHHHHHHh-cCCCEEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 467888999988 4567776 8999999999865321 2467788888753
No 213
>PRK09989 hypothetical protein; Provisional
Probab=80.81 E-value=16 Score=28.48 Aligned_cols=93 Identities=8% Similarity=-0.072 Sum_probs=59.5
Q ss_pred HHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCCC-cc--------------------chhHHHHHHHHHc
Q psy12849 18 FLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGP-YT--------------------WYGEAVVKACIEA 76 (138)
Q Consensus 18 ~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GP-f~--------------------~~~~~v~~Aci~~ 76 (138)
..+++.+.+.|-+.+++....-.+.+++.+++++..+-+.+.++ +. ..-.+.++.|.+.
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~l 97 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDLALEYALAL 97 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHHHHHHHHHh
Confidence 45677788888777776443335778999999998877775432 10 0124677778899
Q ss_pred CCCeeeC-CCCh-------H---HHHHHHHHhHHHHHhCCCEEEe
Q psy12849 77 KTHHVDI-TGEP-------Y---FMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 77 g~hYvDi-sge~-------~---~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
|+.||=+ +|.. . ...+-..+.-+.|++.|+.+..
T Consensus 98 g~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 142 (258)
T PRK09989 98 NCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILV 142 (258)
T ss_pred CcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999864 2221 1 1112223556678889998855
No 214
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.79 E-value=2.6 Score=32.97 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=28.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhc------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++||++|..
T Consensus 58 ~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~lv~nag~~ 96 (263)
T PRK08339 58 VDVSYIVADLTKREDLERTVKELKNIGEPDIFFFSTGGP 96 (263)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHhhCCCcEEEECCCCC
Confidence 3578899999999999998873 79999999853
No 215
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.79 E-value=7.4 Score=30.85 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=34.8
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+++.+..+++++|+||.|...+.. -..+-++|.+.+.++|..
T Consensus 112 ~~~~~~~~~~~~DiVi~~~D~~~~-r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 112 DDDELAALIAGHDLVLDCTDNVAT-RNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CHHHHHHHHhcCCEEEecCCCHHH-HHHHHHHHHHhCCEEEEe
Confidence 456678899999999999987653 356889999999999984
No 216
>KOG1200|consensus
Probab=80.79 E-value=1.4 Score=35.21 Aligned_cols=39 Identities=15% Similarity=0.218 Sum_probs=29.3
Q ss_pred hhhhcCC-CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 23 KASWFGV-RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 23 ~a~~~~~-~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
-|..++- .+-....+|++++.+++.++++ .++++||+|=
T Consensus 54 ta~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~psvlVncAGI 100 (256)
T KOG1200|consen 54 TAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPSVLVNCAGI 100 (256)
T ss_pred HHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCcEEEEcCcc
Confidence 3444433 5667799999999998887664 5999999994
No 217
>PRK06197 short chain dehydrogenase; Provisional
Probab=80.78 E-value=2.3 Score=33.92 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=27.5
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|.+++.++++ +.|++||++|.
T Consensus 67 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 67 ADVTLQELDLTSLASVRAAADALRAAYPRIDLLINNAGV 105 (306)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHhhCCCCCEEEECCcc
Confidence 457889999999999988877 36999999985
No 218
>PRK05717 oxidoreductase; Validated
Probab=80.71 E-value=1.9 Score=33.14 Aligned_cols=32 Identities=3% Similarity=-0.002 Sum_probs=26.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|++||++|..
T Consensus 57 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 57 NAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVCNAAIA 95 (255)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcc
Confidence 577899999999998776654 59999999854
No 219
>PRK08278 short chain dehydrogenase; Provisional
Probab=80.68 E-value=2.7 Score=32.96 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=27.6
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.+++++.++++ +.|++||++|.
T Consensus 62 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~ 100 (273)
T PRK08278 62 GQALPLVGDVRDEDQVAAAVAKAVERFGGIDICVNNASA 100 (273)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 357788999999999998887 46999999985
No 220
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=80.66 E-value=5.6 Score=29.18 Aligned_cols=84 Identities=11% Similarity=0.035 Sum_probs=51.8
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
......++- +..++.+.++++|+||.++|--. .+=..-++.|+|-+|+.=+.. . ++...++...+.|
T Consensus 52 gatV~~~~~-~t~~l~~~v~~ADIVvsAtg~~~----~i~~~~ikpGa~Vidvg~~~~-------~-~~~~~~~a~~~tP 118 (140)
T cd05212 52 GATVYSCDW-KTIQLQSKVHDADVVVVGSPKPE----KVPTEWIKPGATVINCSPTKL-------S-GDDVKESASLYVP 118 (140)
T ss_pred CCEEEEeCC-CCcCHHHHHhhCCEEEEecCCCC----ccCHHHcCCCCEEEEcCCCcc-------c-chhhHhhceEEcC
Confidence 456666653 33468889999999999998442 244556889999999854431 1 2334444455555
Q ss_pred CCCCccchHhHHHHHHHHHh
Q psy12849 111 ACGIETLPIDMGVLMLQDSF 130 (138)
Q Consensus 111 ~~G~d~~p~dl~~~~~~~~~ 130 (138)
--| +.|-+....+.+.+
T Consensus 119 vpg---GVGp~T~a~L~~n~ 135 (140)
T cd05212 119 MTG---GVGKLTVAMRMQNM 135 (140)
T ss_pred CCC---CchHHHHHHHHHHH
Confidence 444 44445555554443
No 221
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=80.54 E-value=4.7 Score=30.90 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=25.9
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVG 60 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~G 60 (138)
++.++.+|+.|++++.++++ +.|++||++|
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~nAg 93 (260)
T PRK12823 57 EALALTADLETYAGAQAAMAAAVEAFGRIDVLINNVG 93 (260)
T ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 56788999999999888877 4699999997
No 222
>PRK05993 short chain dehydrogenase; Provisional
Probab=80.48 E-value=1.9 Score=33.90 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=26.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc--------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK--------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GP 61 (138)
.+.++.+|+.|++++.+++++ .|++||++|.
T Consensus 48 ~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~Ag~ 86 (277)
T PRK05993 48 GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNGAY 86 (277)
T ss_pred CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECCCc
Confidence 467899999999998887763 4999999974
No 223
>PRK07825 short chain dehydrogenase; Provisional
Probab=80.35 E-value=1.9 Score=33.49 Aligned_cols=32 Identities=13% Similarity=0.124 Sum_probs=26.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|++||++|..
T Consensus 51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 89 (273)
T PRK07825 51 LVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVM 89 (273)
T ss_pred cceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 478899999999998776664 58999999853
No 224
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.35 E-value=5.1 Score=28.40 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=29.4
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
.++.+.++|+.+++++.++++. .|++|||+|.+.
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 52 AKITFIECDLSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp SEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccc
Confidence 5789999999999998888774 689999999765
No 225
>PRK08589 short chain dehydrogenase; Validated
Probab=80.28 E-value=2.1 Score=33.53 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=27.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++. .|++||++|..
T Consensus 55 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~Ag~~ 93 (272)
T PRK08589 55 KAKAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVD 93 (272)
T ss_pred eEEEEEeecCCHHHHHHHHHHHHHHcCCcCEEEECCCCC
Confidence 578899999999999888874 59999999854
No 226
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.19 E-value=2.4 Score=32.27 Aligned_cols=32 Identities=6% Similarity=0.037 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc--------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK--------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.+++++ .|++||++|.
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id~li~~ag~ 91 (253)
T PRK08642 52 DRAIALQADVTDREQVQAMFATATEHFGKPITTVVNNALA 91 (253)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCc
Confidence 3678899999999999988875 7999999974
No 227
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.19 E-value=2.7 Score=34.57 Aligned_cols=31 Identities=16% Similarity=0.202 Sum_probs=26.6
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|+.|++++.++++ +.|++||++|-
T Consensus 57 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 57 EVLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 56788999999999998885 57999999983
No 228
>PRK07832 short chain dehydrogenase; Provisional
Probab=80.17 E-value=4.5 Score=31.50 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=26.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
...+..+|++|++++.+++.+ .|++||++|..
T Consensus 51 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 51 VPEHRALDISDYDAVAAFAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred cceEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 355678999999998887775 69999999964
No 229
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.15 E-value=3.9 Score=31.82 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=26.7
Q ss_pred CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|++||++|-+
T Consensus 60 ~~v~~~~~D~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 98 (253)
T PRK07904 60 SSVEVIDFDALDTDSHPKVIDAAFAGGDVDVAIVAFGLL 98 (253)
T ss_pred CceEEEEecCCChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 367899999999998666555 589999999854
No 230
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.11 E-value=2.5 Score=32.46 Aligned_cols=32 Identities=6% Similarity=0.176 Sum_probs=27.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|++||++|..
T Consensus 60 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 60 SAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 477889999999999999875 68999999864
No 231
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=80.08 E-value=9.5 Score=32.15 Aligned_cols=62 Identities=16% Similarity=0.131 Sum_probs=47.5
Q ss_pred hcCcEEEecCCCccchhH--HHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 50 KKCRVILNCVGPYTWYGE--AVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~--~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
+..|+|+++.|+-...++ ...+.+++.|.|-|...=. +....+ .++.+.|+++|+.+.-.+-
T Consensus 77 ~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~-~lA~~~-~el~~~A~~~g~~l~yEAt 140 (333)
T COG0460 77 EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKA-LLALHY-HELREAAEKNGVKLLYEAT 140 (333)
T ss_pred ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCch-HhHhhH-HHHHHHHHHhCCeEEEEee
Confidence 457899999988566667 7889999999999987443 443443 3677889999999887654
No 232
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=79.95 E-value=7.4 Score=33.03 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=36.1
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
++.....+ +.+.+.++++++|+||.|..-+. .-.-+-++|.+.|++||-
T Consensus 114 i~~~~~~i-~~~~~~~~~~~~D~Vvd~~d~~~-~r~~ln~~~~~~~~p~v~ 162 (392)
T PRK07878 114 VRLHEFRL-DPSNAVELFSQYDLILDGTDNFA-TRYLVNDAAVLAGKPYVW 162 (392)
T ss_pred EEEEeccC-ChhHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEE
Confidence 33333344 34567889999999999997653 334578999999999986
No 233
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=79.93 E-value=4.6 Score=32.39 Aligned_cols=62 Identities=6% Similarity=-0.083 Sum_probs=38.2
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHH------HHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVV------KACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~------~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
..++++++|+||-|+.|.... +.++ ...+..|...||.|+-.+-.- .+..+.++++|+.++-
T Consensus 46 ~~~~~~~advVil~vp~~~~~-~~v~~g~~~l~~~~~~g~~vid~st~~p~~~---~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 46 PAEAAEGADRVITMLPAGQHV-ISVYSGDEGILPKVAKGSLLIDCSTIDPDSA---RKLAELAAAHGAVFMD 113 (288)
T ss_pred HHHHHhcCCEEEEeCCChHHH-HHHHcCcchHhhcCCCCCEEEECCCCCHHHH---HHHHHHHHHcCCcEEE
Confidence 456778899999999543322 2332 234566888899887655432 2334566667776655
No 234
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=79.77 E-value=2.7 Score=32.58 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=28.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++++|+.|++++.+++.+ .|++|+++|..
T Consensus 60 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 60 EAHGYVCDVTDEDGVQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 578899999999999998875 69999999964
No 235
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=79.75 E-value=2.4 Score=31.78 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=27.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|.||+++|..
T Consensus 49 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 87 (239)
T TIGR01830 49 KALGVVCDVSDREDVKAVVEEIEEELGPIDILVNNAGIT 87 (239)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 577899999999999888865 49999999964
No 236
>PRK14852 hypothetical protein; Provisional
Probab=79.71 E-value=7.7 Score=37.16 Aligned_cols=61 Identities=8% Similarity=0.082 Sum_probs=42.3
Q ss_pred HhhhhcCC-CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc-hhHHHHHHHHHcCCCeeeC
Q psy12849 22 QKASWFGV-RTNRTTVVNTINESSILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 22 ~~a~~~~~-~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~-~~~~v~~Aci~~g~hYvDi 83 (138)
++.+++.. -+++.+...+ +++.+.++++++|+||+|..-|.. .-..+.+.|.+.|++.|..
T Consensus 393 ~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~a 455 (989)
T PRK14852 393 ERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITA 455 (989)
T ss_pred HHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEe
Confidence 33444433 2344444444 567899999999999999975542 2357888999999999874
No 237
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.69 E-value=8.8 Score=31.53 Aligned_cols=40 Identities=5% Similarity=0.182 Sum_probs=30.6
Q ss_pred CCHHHHHHHHhcCcEEEecCC-CccchhHHHHHHHHHcCCCeeeCC
Q psy12849 40 INESSILIMAKKCRVILNCVG-PYTWYGEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~G-Pf~~~~~~v~~Aci~~g~hYvDis 84 (138)
+++..|.+.++++|+||+++| |.. ..... ++-|+--||++
T Consensus 184 s~t~~L~~~~~~ADIvI~Avgk~~l-v~~~~----vk~GavVIDVg 224 (279)
T PRK14178 184 SKTENLKAELRQADILVSAAGKAGF-ITPDM----VKPGATVIDVG 224 (279)
T ss_pred cChhHHHHHHhhCCEEEECCCcccc-cCHHH----cCCCcEEEEee
Confidence 466789999999999999999 643 33333 48888888874
No 238
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=79.68 E-value=2.7 Score=31.67 Aligned_cols=31 Identities=10% Similarity=0.187 Sum_probs=26.7
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|+.|.+++.++++ +.|++|||+|.
T Consensus 53 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (245)
T PRK12936 53 RVKIFPANLSDRDEVKALGQKAEADLEGVDILVNNAGI 90 (245)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 57888999999999988765 47999999985
No 239
>PRK08177 short chain dehydrogenase; Provisional
Probab=79.66 E-value=3 Score=31.51 Aligned_cols=32 Identities=6% Similarity=0.074 Sum_probs=27.6
Q ss_pred CcceEEeeCCCHHHHHHHHh-----cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-----KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-----~~dvVIn~~GPf 62 (138)
++.+..+|+.|++++.++++ +.|+||+++|.+
T Consensus 46 ~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 46 GVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred ccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 56788999999999988888 479999999865
No 240
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.65 E-value=3.9 Score=31.47 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=27.0
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.+++++.++++. .|++||++|.
T Consensus 55 ~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 55 RCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGV 92 (263)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 567899999999999998874 5999999995
No 241
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=79.65 E-value=2.3 Score=32.67 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=27.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|.+++.+++++ .|++|||+|..
T Consensus 61 ~~~~~~~D~~~~~~i~~~~~~~~~~~~~~d~li~~ag~~ 99 (255)
T PRK06113 61 QAFACRCDITSEQELSALADFALSKLGKVDILVNNAGGG 99 (255)
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 567889999999999887764 59999999853
No 242
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.64 E-value=3.4 Score=31.57 Aligned_cols=32 Identities=13% Similarity=0.170 Sum_probs=27.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.+++++.++++. .|++||++|.+
T Consensus 59 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 97 (258)
T PRK06949 59 AAHVVSLDVTDYQSIKAAVAHAETEAGTIDILVNNSGVS 97 (258)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 578899999999999998874 79999999953
No 243
>PRK05599 hypothetical protein; Provisional
Probab=79.49 E-value=4.9 Score=31.00 Aligned_cols=34 Identities=6% Similarity=0.033 Sum_probs=27.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
.++.++++|+.|++++.+++.+ .|++||++|.+.
T Consensus 49 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nag~~~ 89 (246)
T PRK05599 49 TSVHVLSFDAQDLDTHRELVKQTQELAGEISLAVVAFGILG 89 (246)
T ss_pred CceEEEEcccCCHHHHHHHHHHHHHhcCCCCEEEEecCcCC
Confidence 3477899999999998887653 699999999753
No 244
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.47 E-value=2.2 Score=31.98 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.+++++ .|.||+++|..
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 93 (246)
T PRK05653 54 GEARVLVFDVSDEAAVRALIEAAVEAFGALDILVNNAGIT 93 (246)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3577889999999999888875 49999999764
No 245
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.45 E-value=8.6 Score=29.84 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=38.8
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHc-CCCeeeCCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEA-KTHHVDITGE 86 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~-g~hYvDisge 86 (138)
+++...-.++ ++.+.++++++|+||.|...+.. -..+.+.|.+. ++++|-.+|.
T Consensus 98 ~v~~~~~~i~-~~~~~~~~~~~DvVI~a~D~~~~-r~~l~~~~~~~~~~p~I~~~~~ 152 (212)
T PRK08644 98 EIEAHNEKID-EDNIEELFKDCDIVVEAFDNAET-KAMLVETVLEHPGKKLVAASGM 152 (212)
T ss_pred EEEEEeeecC-HHHHHHHHcCCCEEEECCCCHHH-HHHHHHHHHHhCCCCEEEeehh
Confidence 3344444443 45677899999999999876543 24678999998 9999976543
No 246
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=79.42 E-value=3 Score=31.61 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.5
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++ ..|++||++|.
T Consensus 52 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 52 GNAQAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 357889999999999998887 47999999973
No 247
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.40 E-value=2.1 Score=33.96 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=24.9
Q ss_pred ceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 33 RTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++++|++|++++.++++. .|++||++|-
T Consensus 58 ~~~~~Dv~d~~~v~~~~~~i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 58 YVYELDVSKPEHFKSLAESLKKDLGKIDFIVHSVAF 93 (274)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 5789999999999888764 5999999994
No 248
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.25 E-value=17 Score=28.78 Aligned_cols=89 Identities=11% Similarity=0.021 Sum_probs=57.6
Q ss_pred hhhcCCCCcceEEeeCCCHHH---HHHHHh----c-CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHH
Q psy12849 24 ASWFGVRTNRTTVVNTINESS---ILIMAK----K-CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQY 95 (138)
Q Consensus 24 a~~~~~~~~~~~~~D~~d~~~---L~~~~~----~-~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~ 95 (138)
++.+-...+..+.+-.+.+.. +.++.+ + -+++|-+. +.....-++.++++|..|+=.-+- ..++.
T Consensus 33 ~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaG---TVl~~e~a~~a~~aGA~FiVsP~~---~~~v~- 105 (222)
T PRK07114 33 IKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVG---SIVDAATAALYIQLGANFIVTPLF---NPDIA- 105 (222)
T ss_pred HHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeE---eCcCHHHHHHHHHcCCCEEECCCC---CHHHH-
Confidence 333333566777777765544 333332 2 24665544 455567899999999999866443 22233
Q ss_pred HhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 96 EYNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 96 ~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
+.+++.|+..+||+- .|+++...+
T Consensus 106 ---~~~~~~~i~~iPG~~---TpsEi~~A~ 129 (222)
T PRK07114 106 ---KVCNRRKVPYSPGCG---SLSEIGYAE 129 (222)
T ss_pred ---HHHHHcCCCEeCCCC---CHHHHHHHH
Confidence 567889999999998 888887654
No 249
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.17 E-value=2.1 Score=33.05 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=27.3
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++++|+.+++++.++++. .|++||++|.
T Consensus 69 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 69 GRVEAVVCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107 (262)
T ss_pred ceEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4678899999999999888863 5999999984
No 250
>PRK06523 short chain dehydrogenase; Provisional
Probab=79.13 E-value=2.3 Score=32.71 Aligned_cols=32 Identities=6% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++++|+.|++++.++++ +.|++||++|.
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK06523 49 EGVEFVAADLTTAEGCAAVARAVLERLGGVDILVHVLGG 87 (260)
T ss_pred CceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 357789999999998887765 46999999994
No 251
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=79.10 E-value=1.1 Score=37.40 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=43.6
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH----H---HHHHHhHHHHHhCCCEEEeCCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM----E---YMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~----~---~~~~~~~~~A~~~gv~iv~~~G 113 (138)
..++++++|+|+-|+ |-. .....++...+.|+.-||+|++...- . ++-..+.++.+.+++...|||=
T Consensus 43 ~~~~~~~~D~vFlal-p~~-~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~~a~lIAnPgC~ 116 (310)
T TIGR01851 43 RAKLLNAADVAILCL-PDD-AAREAVSLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCY 116 (310)
T ss_pred HhHhhcCCCEEEECC-CHH-HHHHHHHHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhccCCEEECCCCH
Confidence 346778999999999 543 45677888888999999999874321 1 1111133444555666666654
No 252
>PRK07109 short chain dehydrogenase; Provisional
Probab=79.05 E-value=3.1 Score=34.10 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|++||++|..
T Consensus 57 ~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~lInnAg~~ 96 (334)
T PRK07109 57 GEALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVT 96 (334)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHHHCCCCCEEEECCCcC
Confidence 357789999999999998876 479999999853
No 253
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=78.91 E-value=6.1 Score=31.55 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHH------HHHHHcCCCeeeCCCChHH-HHHHHHHhHHHHHhCCCEEEeC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVV------KACIEAKTHHVDITGEPYF-MEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~------~Aci~~g~hYvDisge~~~-~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
+.++++++|+||-|+ |....-..++ ...+..|+.++|+|.-.+- .+++ .+.+++.|+.++.+
T Consensus 52 ~~e~~~~~d~vi~~v-p~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l----~~~~~~~g~~~~d~ 120 (296)
T PRK11559 52 AKAVAEQCDVIITML-PNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREI----AAALKAKGIEMLDA 120 (296)
T ss_pred HHHHHhcCCEEEEeC-CCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHH----HHHHHHcCCcEEEc
Confidence 455678999999999 5443323332 2344678999998776654 3333 34445556655443
No 254
>PRK07069 short chain dehydrogenase; Validated
Probab=78.79 E-value=2.6 Score=31.96 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=25.8
Q ss_pred cceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 32 NRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
...+.+|+.|++++.++++. .|+|||++|+..
T Consensus 53 ~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~ 91 (251)
T PRK07069 53 AFAAVQDVTDEAQWQALLAQAADAMGGLSVLVNNAGVGS 91 (251)
T ss_pred EEEEEeecCCHHHHHHHHHHHHHHcCCccEEEECCCcCC
Confidence 34578999999999887763 699999999653
No 255
>PRK08251 short chain dehydrogenase; Provisional
Probab=78.79 E-value=3 Score=31.71 Aligned_cols=32 Identities=3% Similarity=0.028 Sum_probs=27.0
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++++|+.|++++.++++ +.|++||++|.
T Consensus 53 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 53 IKVAVAALDVNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91 (248)
T ss_pred ceEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 367889999999999888776 47999999983
No 256
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=78.68 E-value=28 Score=26.93 Aligned_cols=96 Identities=5% Similarity=-0.139 Sum_probs=61.0
Q ss_pred HHHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCC-Ccc--------------------chhHHHHHHHHH
Q psy12849 17 IFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVG-PYT--------------------WYGEAVVKACIE 75 (138)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~G-Pf~--------------------~~~~~v~~Aci~ 75 (138)
+-..++.+++.|.+.++...-.-.+.+++.+++++..+-|.+.+ |+. ..-.+.++.|.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~~~~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 95 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYDWDAEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVALAIAYARA 95 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHHHHHHHHH
Confidence 45567778888876666543122367889999999888777663 221 011257788999
Q ss_pred cCCCeeeC-CC----Ch---HHHH---HHHHHhHHHHHhCCCEEEeCC
Q psy12849 76 AKTHHVDI-TG----EP---YFME---YMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 76 ~g~hYvDi-sg----e~---~~~~---~~~~~~~~~A~~~gv~iv~~~ 112 (138)
.|+.+|-+ +| +. ...+ +...++-+.|++.|+.+....
T Consensus 96 lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 96 LGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred hCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 99999875 22 11 1111 122355677899999988764
No 257
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=78.62 E-value=3.2 Score=31.22 Aligned_cols=33 Identities=15% Similarity=-0.016 Sum_probs=27.6
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ ..|+|||++|.+
T Consensus 50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (242)
T TIGR01829 50 FDFRVVEGDVSSFESCKAAVAKVEAELGPIDVLVNNAGIT 89 (242)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 467899999999999888776 379999999854
No 258
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=78.53 E-value=3.4 Score=31.70 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=27.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++. .|++||++|.+
T Consensus 53 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 53 AAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFNNAALF 91 (257)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 577899999999999988884 69999999853
No 259
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.50 E-value=2.7 Score=32.70 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=27.0
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++++|+.|++++.++++ +.|++||++|-.
T Consensus 58 ~~~~~~~Dv~~~~~i~~~~~~~~~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 58 PAPVLELDVTNEEHLASLADRVREHVDGLDGVVHSIGFA 96 (256)
T ss_pred CCcEEeCCCCCHHHHHHHHHHHHHHcCCCcEEEEccccc
Confidence 56789999999999888875 369999999853
No 260
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=78.42 E-value=3 Score=33.92 Aligned_cols=31 Identities=0% Similarity=0.029 Sum_probs=27.4
Q ss_pred CcceEEeeCCCHHHHHHHHhcC--cEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKC--RVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~--dvVIn~~GP 61 (138)
++.++.+|+.|.+++.++++++ |+|||++|.
T Consensus 53 ~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~A~~ 85 (349)
T TIGR02622 53 KIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAAQ 85 (349)
T ss_pred CceEEEccCCCHHHHHHHHhhcCCCEEEECCcc
Confidence 5677899999999999999964 999999984
No 261
>PRK06813 homoserine dehydrogenase; Validated
Probab=78.39 E-value=9.7 Score=32.08 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=44.1
Q ss_pred cCcEEEecCCCcc----chhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849 51 KCRVILNCVGPYT----WYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 51 ~~dvVIn~~GPf~----~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~ 112 (138)
..||||.|. |.. ..+...++.+++.|.|-|...=. +....+ .++.+.|+++|+.+...+
T Consensus 86 ~~dVvVe~T-~s~~~~~e~a~~~~~~aL~~G~hVVTANK~-~la~~~-~eL~~lA~~~g~~~~yEa 148 (346)
T PRK06813 86 SGTVLVEST-VTNLKDGNPGKQYIKQAIEKKMDIVAISKG-ALVTNW-REINEAAKIANVRIRYSG 148 (346)
T ss_pred CCCEEEECC-CCccCCchHHHHHHHHHHHCCCeEEcCCcH-HHhccH-HHHHHHHHHcCCeEEEee
Confidence 479999997 322 34567789999999999987433 333344 477888999999999655
No 262
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=78.36 E-value=6.4 Score=28.88 Aligned_cols=53 Identities=6% Similarity=0.042 Sum_probs=39.7
Q ss_pred CcceEEeeCCCHHHHHHHHhc---------CcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKK---------CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~---------~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+.+++..=+.+.+++.+++.+ -+++|+|.--.......+.+.+.+.|++|||.
T Consensus 57 ~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 57 QADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp HBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred cccceEeecccchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence 457777778888888887665 57899988666666788999999999999995
No 263
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=78.25 E-value=8 Score=32.13 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=38.9
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
++....-++.+......+++++|+||+|...+.. -..+-+.|.+.++.+|+.
T Consensus 70 ~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~a-r~~in~~c~~~~ip~I~~ 121 (312)
T cd01489 70 KIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAA-RRHVNKMCLAADVPLIES 121 (312)
T ss_pred eEEEEeccCCCccchHHHHhcCCEEEECCCCHHH-HHHHHHHHHHCCCCEEEE
Confidence 3444444555543346889999999999987643 356889999999999996
No 264
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=78.19 E-value=3.7 Score=31.17 Aligned_cols=32 Identities=16% Similarity=-0.025 Sum_probs=26.9
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++..+.+|+.|.+++.++++ +.|++||++|..
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (246)
T PRK12938 54 DFIASEGNVGDWDSTKAAFDKVKAEVGEIDVLVNNAGIT 92 (246)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 46677899999999988876 479999999864
No 265
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.96 E-value=26 Score=27.47 Aligned_cols=87 Identities=16% Similarity=0.152 Sum_probs=53.4
Q ss_pred hhhcCCCCcceEEeeCCCHHH---HHHHHhcC-cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHH
Q psy12849 24 ASWFGVRTNRTTVVNTINESS---ILIMAKKC-RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNT 99 (138)
Q Consensus 24 a~~~~~~~~~~~~~D~~d~~~---L~~~~~~~-dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~ 99 (138)
++.+-...+..+.+-++.++. ++++.+.+ +++|-+- +.....-++.++++|.+|+=.-+-.+ .++ +
T Consensus 33 ~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAG---TVl~~~~a~~a~~aGA~FivsP~~~~---~vi----~ 102 (212)
T PRK05718 33 AKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAG---TVLNPEQLAQAIEAGAQFIVSPGLTP---PLL----K 102 (212)
T ss_pred HHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEe---eccCHHHHHHHHHcCCCEEECCCCCH---HHH----H
Confidence 333333456677776665543 44444443 4444433 34445778999999999988755433 223 4
Q ss_pred HHHhCCCEEEeCCCCccchHhHHH
Q psy12849 100 RAQESEVCVVSACGIETLPIDMGV 123 (138)
Q Consensus 100 ~A~~~gv~iv~~~G~d~~p~dl~~ 123 (138)
.|++.++..+||+- -|+++..
T Consensus 103 ~a~~~~i~~iPG~~---TptEi~~ 123 (212)
T PRK05718 103 AAQEGPIPLIPGVS---TPSELML 123 (212)
T ss_pred HHHHcCCCEeCCCC---CHHHHHH
Confidence 56778999999887 6777543
No 266
>PRK06198 short chain dehydrogenase; Provisional
Probab=77.95 E-value=2.5 Score=32.41 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.+++++.++++. .|++|||+|..
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 57 KAVFVQADLSDVEDCRRVVAAADEAFGRLDALVNAAGLT 95 (260)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 567889999999999888764 69999999863
No 267
>PRK07578 short chain dehydrogenase; Provisional
Probab=77.85 E-value=3.3 Score=30.66 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=25.8
Q ss_pred ceEEeeCCCHHHHHHHHh---cCcEEEecCCCc
Q psy12849 33 RTTVVNTINESSILIMAK---KCRVILNCVGPY 62 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~---~~dvVIn~~GPf 62 (138)
..+++|+.|++++.++++ +.|++||++|..
T Consensus 34 ~~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~ 66 (199)
T PRK07578 34 GDVQVDITDPASIRALFEKVGKVDAVVSAAGKV 66 (199)
T ss_pred CceEecCCChHHHHHHHHhcCCCCEEEECCCCC
Confidence 467899999999999888 579999999853
No 268
>PRK07102 short chain dehydrogenase; Provisional
Probab=77.84 E-value=2.5 Score=32.18 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhc----CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK----CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~----~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++++ .|++|+++|..
T Consensus 51 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~~ag~~ 87 (243)
T PRK07102 51 VAVSTHELDILDTASHAAFLDSLPALPDIVLIAVGTL 87 (243)
T ss_pred CeEEEEecCCCChHHHHHHHHHHhhcCCEEEECCcCC
Confidence 4688999999999999888875 59999999853
No 269
>PRK08309 short chain dehydrogenase; Provisional
Probab=77.82 E-value=6.3 Score=29.75 Aligned_cols=58 Identities=9% Similarity=0.131 Sum_probs=46.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCccchhHHHHHHHHHcCCC-----eeeCCCChHH
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYTWYGEAVVKACIEAKTH-----HVDITGEPYF 89 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~~~~~~v~~Aci~~g~h-----YvDisge~~~ 89 (138)
.++.++.+|+.|++++.+++++ .|++++.+=.. ....++++|-+.|++ ++=+-|....
T Consensus 47 ~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv~~vh~~--~~~~~~~~~~~~gv~~~~~~~~h~~gs~~~ 116 (177)
T PRK08309 47 ESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAVAWIHSS--AKDALSVVCRELDGSSETYRLFHVLGSAAS 116 (177)
T ss_pred CcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEEEecccc--chhhHHHHHHHHccCCCCceEEEEeCCcCC
Confidence 4677888999999999998875 46888888432 346899999999999 8888887653
No 270
>PRK05855 short chain dehydrogenase; Validated
Probab=77.79 E-value=2.5 Score=36.07 Aligned_cols=32 Identities=13% Similarity=0.126 Sum_probs=28.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|++||++|..
T Consensus 365 ~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~ 403 (582)
T PRK05855 365 VAHAYRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIG 403 (582)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEECCccC
Confidence 578899999999999998875 69999999964
No 271
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=77.77 E-value=8.7 Score=30.51 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=37.0
Q ss_pred cceEEeeCCCHHH-HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 32 NRTTVVNTINESS-ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 32 ~~~~~~D~~d~~~-L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+....-.+.++.. -..+++++|+||+|..-+. .-..+-+.|.+.++++||.
T Consensus 71 i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~-aR~~ln~~c~~~~iplI~~ 122 (234)
T cd01484 71 VVPYQNKVGPEQDFNDTFFEQFHIIVNALDNII-ARRYVNGMLIFLIVPLIES 122 (234)
T ss_pred EEEEeccCChhhhchHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 3444445543333 2578999999999997654 3356889999999999996
No 272
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=77.70 E-value=3.1 Score=31.60 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=27.6
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.+++++.++++ +.|++||++|-.
T Consensus 52 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 91 (248)
T TIGR01832 52 RRFLSLTADLSDIEAIKALVDSAVEEFGHIDILVNNAGII 91 (248)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 357889999999999987776 379999999853
No 273
>PRK06128 oxidoreductase; Provisional
Probab=77.69 E-value=3.2 Score=33.09 Aligned_cols=31 Identities=10% Similarity=0.082 Sum_probs=26.6
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|+.|++++.++++ +.|++||++|.
T Consensus 107 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 107 KAVALPGDLKDEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 56788999999999988876 46999999984
No 274
>PRK06914 short chain dehydrogenase; Provisional
Probab=77.67 E-value=2.4 Score=32.98 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=26.6
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
.++.++.+|+.|++++.+ +++ .|+||+|+|...
T Consensus 54 ~~~~~~~~D~~d~~~~~~-~~~~~~~~~~id~vv~~ag~~~ 93 (280)
T PRK06914 54 QNIKVQQLDVTDQNSIHN-FQLVLKEIGRIDLLVNNAGYAN 93 (280)
T ss_pred CceeEEecCCCCHHHHHH-HHHHHHhcCCeeEEEECCcccc
Confidence 468889999999999876 443 599999998643
No 275
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=77.66 E-value=2.4 Score=31.98 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=27.6
Q ss_pred CcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKKC-------RVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf 62 (138)
++..+.+|+.|++++.++++++ |+|||++|..
T Consensus 52 ~~~~~~~D~~d~~~i~~~~~~~~~~~~~id~vi~~ag~~ 90 (247)
T PRK09730 52 KAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGIL 90 (247)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 4678999999999999988864 7999999964
No 276
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=77.61 E-value=4.8 Score=33.39 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=30.4
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
.+++|+|+.|+++ . ....+++.+.++|++-||.+|+.
T Consensus 71 ~~~~DvVf~a~p~-~-~s~~~~~~~~~~G~~VIDlsg~f 107 (341)
T TIGR00978 71 SKDVDIVFSALPS-E-VAEEVEPKLAEAGKPVFSNASNH 107 (341)
T ss_pred hccCCEEEEeCCH-H-HHHHHHHHHHHCCCEEEECChhh
Confidence 3789999999943 3 44578899999999999999983
No 277
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.44 E-value=2.6 Score=33.18 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=26.0
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
+...+.+|+.|++++.++++. .|++||++|-
T Consensus 57 ~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~linnAg~ 94 (262)
T PRK07984 57 SDIVLPCDVAEDASIDAMFAELGKVWPKFDGFVHSIGF 94 (262)
T ss_pred CceEeecCCCCHHHHHHHHHHHHhhcCCCCEEEECCcc
Confidence 456788999999999988864 5999999983
No 278
>PLN02778 3,5-epimerase/4-reductase
Probab=77.25 E-value=5.9 Score=31.89 Aligned_cols=46 Identities=15% Similarity=0.024 Sum_probs=33.9
Q ss_pred EEeeCCCHHHHHHHHh--cCcEEEecCCCccc-------------------hhHHHHHHHHHcCCCe
Q psy12849 35 TVVNTINESSILIMAK--KCRVILNCVGPYTW-------------------YGEAVVKACIEAKTHH 80 (138)
Q Consensus 35 ~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~~-------------------~~~~v~~Aci~~g~hY 80 (138)
...|+.|.+.+...++ ++|+||||||+... ....++++|.+.|++.
T Consensus 39 ~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~ 105 (298)
T PLN02778 39 GSGRLENRASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVL 105 (298)
T ss_pred ecCccCCHHHHHHHHHhcCCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 3457788888888888 68999999997521 0235889998888654
No 279
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=77.14 E-value=19 Score=29.59 Aligned_cols=60 Identities=8% Similarity=-0.013 Sum_probs=46.2
Q ss_pred hhhcCCCCcceEEeeCCCH-----HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 24 ASWFGVRTNRTTVVNTINE-----SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 24 a~~~~~~~~~~~~~D~~d~-----~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
.++++.++.-|+-+-..|+ +.|..+++.-|+||+---.++....+-.+...+.|.||+|+
T Consensus 54 ~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~ 118 (300)
T COG1023 54 VAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV 118 (300)
T ss_pred HHhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEec
Confidence 3445667778887766532 55777788899999998877777777777888999999995
No 280
>PRK07791 short chain dehydrogenase; Provisional
Probab=77.13 E-value=2.8 Score=33.30 Aligned_cols=32 Identities=9% Similarity=0.030 Sum_probs=26.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.++++. .|++||++|.+
T Consensus 65 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAG~~ 103 (286)
T PRK07791 65 EAVANGDDIADWDGAANLVDAAVETFGGLDVLVNNAGIL 103 (286)
T ss_pred ceEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 567889999999998887763 59999999964
No 281
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.93 E-value=7.6 Score=29.40 Aligned_cols=31 Identities=13% Similarity=0.200 Sum_probs=26.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.+++++.+++++ .|+|||++|.
T Consensus 57 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (252)
T PRK06077 57 EGIGVLADVSTREGCETLAKATIDRYGVADILVNNAGL 94 (252)
T ss_pred eeEEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 466889999999999888874 6999999983
No 282
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=76.87 E-value=3.6 Score=35.29 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=28.2
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf 62 (138)
.+..+.+|+.|++++.+.+.+.|++||++|..
T Consensus 225 ~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~ 256 (406)
T PRK07424 225 PVKTLHWQVGQEAALAELLEKVDILIINHGIN 256 (406)
T ss_pred CeEEEEeeCCCHHHHHHHhCCCCEEEECCCcC
Confidence 35678899999999999999999999999853
No 283
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=76.85 E-value=12 Score=31.57 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=36.3
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
++.....+ +++.+.++++++|+||+|..-|.. -..+-++|.+.|+++|-
T Consensus 113 i~~~~~~i-~~~~~~~~~~~~DlVid~~Dn~~~-r~~in~~~~~~~iP~v~ 161 (370)
T PRK05600 113 VNALRERL-TAENAVELLNGVDLVLDGSDSFAT-KFLVADAAEITGTPLVW 161 (370)
T ss_pred eEEeeeec-CHHHHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEE
Confidence 34444444 456788899999999999986542 24567999999999875
No 284
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=76.83 E-value=2.5 Score=32.61 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=26.3
Q ss_pred CcceEEeeCCCHHHHHHHHhcC-----------cEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKKC-----------RVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~-----------dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++. +++||++|-+
T Consensus 56 ~v~~~~~Dl~~~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~ 98 (256)
T TIGR01500 56 RVVRVSLDLGAEAGLEQLLKALRELPRPKGLQRLLLINNAGTL 98 (256)
T ss_pred eEEEEEeccCCHHHHHHHHHHHHhccccCCCceEEEEeCCccc
Confidence 5788999999999998887642 4899999843
No 285
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=76.80 E-value=2.7 Score=29.33 Aligned_cols=32 Identities=6% Similarity=0.151 Sum_probs=26.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.+++++.+++.+ .|.+||++|+.
T Consensus 54 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 92 (180)
T smart00822 54 EVTVVACDVADRAALAAALAAIPARLGPLRGVIHAAGVL 92 (180)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHcCCeeEEEEccccC
Confidence 566789999999998888776 39999999864
No 286
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=76.68 E-value=3.5 Score=31.08 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=26.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVG 60 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~G 60 (138)
.++.++.+|+.|++++.+++++ .|++||++|
T Consensus 52 ~~~~~~~~D~~~~~~v~~~~~~~~~~~~~id~vi~~ag 89 (245)
T PRK12824 52 DQVRLKELDVTDTEECAEALAEIEEEEGPVDILVNNAG 89 (245)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4578999999999998888764 799999997
No 287
>PLN00015 protochlorophyllide reductase
Probab=76.62 E-value=2.9 Score=33.55 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|.+++.++++ ..|++||++|-+
T Consensus 47 ~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lInnAG~~ 86 (308)
T PLN00015 47 DSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVY 86 (308)
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence 357788999999999888876 359999999853
No 288
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=76.54 E-value=3 Score=32.00 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=27.3
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++.+|++|++++.+++.+ .|++||++|.
T Consensus 53 ~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~vv~~ag~ 91 (259)
T PRK12384 53 GMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYNAGI 91 (259)
T ss_pred ceeEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3578999999999999888764 5999999985
No 289
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.48 E-value=2.6 Score=32.77 Aligned_cols=31 Identities=3% Similarity=-0.010 Sum_probs=25.6
Q ss_pred cceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 32 NRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
..++.+|+.|++++.++++. .|++||++|.+
T Consensus 62 ~~~~~~D~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 62 PIFLPLDVREPGQLEAVFARIAEEWGRLDFLLHSIAFA 99 (258)
T ss_pred ceEEecCcCCHHHHHHHHHHHHHHcCCCCEEEEcCccC
Confidence 45788999999999887754 59999999853
No 290
>PRK09072 short chain dehydrogenase; Provisional
Probab=76.36 E-value=3.4 Score=31.94 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHh------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ ..|++|+++|..
T Consensus 53 ~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv~~ag~~ 91 (263)
T PRK09072 53 GRHRWVVADLTSEAGREAVLARAREMGGINVLINNAGVN 91 (263)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 467899999999999888776 369999999864
No 291
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=76.26 E-value=3.2 Score=32.03 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=27.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++. .|++||++|.
T Consensus 57 ~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 57 GEAIAVKGDVTVESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3567889999999999888864 6999999995
No 292
>PRK12828 short chain dehydrogenase; Provisional
Probab=76.25 E-value=5.8 Score=29.59 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=27.0
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
....+.+|+.|.+++.++++ +.|+||+++|.+
T Consensus 55 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 55 ALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred CceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEECCccc
Confidence 46778899999999988887 479999999854
No 293
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.19 E-value=3.7 Score=31.58 Aligned_cols=33 Identities=3% Similarity=-0.128 Sum_probs=27.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.+++++.+++++ .|+|||++|.+
T Consensus 67 ~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~ 106 (256)
T PRK12748 67 VRCEHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYS 106 (256)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 3588999999999998887764 59999999854
No 294
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=76.19 E-value=3.5 Score=31.60 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++ .|++||++|..
T Consensus 61 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 61 AAEALAFDIADEEAVAAAFARIDAEHGRLDILVNNVGAR 99 (256)
T ss_pred ceEEEEccCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 578999999999999888874 48999999953
No 295
>PRK07041 short chain dehydrogenase; Provisional
Probab=76.12 E-value=4.1 Score=30.60 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++. .|++||++|-
T Consensus 45 ~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~ 79 (230)
T PRK07041 45 APVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD 79 (230)
T ss_pred CceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence 3578899999999999999986 5999999984
No 296
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=75.95 E-value=5.6 Score=33.41 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=34.3
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+++.+..+++++|+||+|...+.. -..+-++|.+.++++|..
T Consensus 215 ~~~~~~~~~~~~D~Vv~~~d~~~~-r~~ln~~~~~~~ip~i~~ 256 (376)
T PRK08762 215 TSDNVEALLQDVDVVVDGADNFPT-RYLLNDACVKLGKPLVYG 256 (376)
T ss_pred ChHHHHHHHhCCCEEEECCCCHHH-HHHHHHHHHHcCCCEEEE
Confidence 445788899999999999987642 246889999999999885
No 297
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.86 E-value=3.8 Score=31.92 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=26.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++++|+.|++++.++++. .|++||++|-
T Consensus 59 ~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 59 QESLLLPCDVTSDEEITACFETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred CceEEEecCCCCHHHHHHHHHHHHHhCCCccEEEECccc
Confidence 4577889999999998888763 6999999984
No 298
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=75.86 E-value=57 Score=28.96 Aligned_cols=80 Identities=10% Similarity=-0.019 Sum_probs=54.7
Q ss_pred eEEeeCCCHHHHHHHHh-cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC-hHHHHHHHHHhHHHHHhCCC-EEEe
Q psy12849 34 TTVVNTINESSILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE-PYFMEYMQYEYNTRAQESEV-CVVS 110 (138)
Q Consensus 34 ~~~~D~~d~~~L~~~~~-~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge-~~~~~~~~~~~~~~A~~~gv-~iv~ 110 (138)
.+.+|..+++.+.+.++ |+++|-+.-| . +. +.+.+.+.+.|+.+|=+..+ .+-.+.+ .+.=+.|++.|+ .++.
T Consensus 210 pISIDT~~~~v~eaAL~aGAdiINsVs~-~-~~-d~~~~l~a~~g~~vVlm~~~~~~~~~~l-~~~ie~a~~~Gi~~IIl 285 (499)
T TIGR00284 210 PVIADTPTLDELYEALKAGASGVIMPDV-E-NA-VELASEKKLPEDAFVVVPGNQPTNYEEL-AKAVKKLRTSGYSKVAA 285 (499)
T ss_pred cEEEeCCCHHHHHHHHHcCCCEEEECCc-c-ch-hHHHHHHHHcCCeEEEEcCCCCchHHHH-HHHHHHHHHCCCCcEEE
Confidence 47899999999999995 5787666655 3 33 36778888899999877643 1111222 233467899999 7777
Q ss_pred CCCCccc
Q psy12849 111 ACGIETL 117 (138)
Q Consensus 111 ~~G~d~~ 117 (138)
--|+++.
T Consensus 286 DPglg~~ 292 (499)
T TIGR00284 286 DPSLSPP 292 (499)
T ss_pred eCCCCcc
Confidence 7776443
No 299
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=75.69 E-value=25 Score=30.80 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=27.6
Q ss_pred HHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 47 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 47 ~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
..++.-++||++.--+.....+..+.+.+.|.||+|
T Consensus 89 ~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fld 124 (470)
T PTZ00142 89 PLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLG 124 (470)
T ss_pred hhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEc
Confidence 334456899999866555566778888899999999
No 300
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=75.50 E-value=3.9 Score=31.41 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=26.0
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++.+|++|++++.++++ ..|+|||++|-
T Consensus 62 ~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 62 DALWIAADVADEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 56789999999999977765 36999999984
No 301
>PRK12743 oxidoreductase; Provisional
Probab=75.46 E-value=4.5 Score=31.16 Aligned_cols=33 Identities=12% Similarity=0.064 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.+++.+ .|++|+++|..
T Consensus 52 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 52 VRAEIRQLDLSDLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3678899999999998887764 69999999864
No 302
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.44 E-value=3.4 Score=33.18 Aligned_cols=33 Identities=6% Similarity=0.039 Sum_probs=27.9
Q ss_pred CCcceEEeeCCCHHHHHHHHhc------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~------~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++||++|-.
T Consensus 62 ~~~~~~~~Dv~d~~~~~~~~~~~~~~g~iD~li~nAG~~ 100 (306)
T PRK07792 62 AKAVAVAGDISQRATADELVATAVGLGGLDIVVNNAGIT 100 (306)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3577899999999999988864 79999999853
No 303
>PRK06701 short chain dehydrogenase; Provisional
Probab=75.38 E-value=4.2 Score=32.42 Aligned_cols=32 Identities=6% Similarity=-0.087 Sum_probs=27.3
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
++.++.+|+.|.+++.+++++ .|++||++|..
T Consensus 97 ~~~~~~~Dl~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~ 135 (290)
T PRK06701 97 KCLLIPGDVSDEAFCKDAVEETVRELGRLDILVNNAAFQ 135 (290)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 577899999999999888864 69999999853
No 304
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=75.36 E-value=1.9 Score=36.65 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=28.5
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
++++|+|+.|+|. .....++.+ ++.|+..||++++.
T Consensus 102 ~~~~DvVf~Alp~--~~s~~i~~~-~~~g~~VIDlSs~f 137 (381)
T PLN02968 102 FSDVDAVFCCLPH--GTTQEIIKA-LPKDLKIVDLSADF 137 (381)
T ss_pred hcCCCEEEEcCCH--HHHHHHHHH-HhCCCEEEEcCchh
Confidence 4899999999953 344677777 57899999999874
No 305
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=75.33 E-value=10 Score=31.41 Aligned_cols=33 Identities=6% Similarity=-0.100 Sum_probs=25.2
Q ss_pred cceEEeeCCCHH-----------HHHHHHhcCcEEEecCCCccc
Q psy12849 32 NRTTVVNTINES-----------SILIMAKKCRVILNCVGPYTW 64 (138)
Q Consensus 32 ~~~~~~D~~d~~-----------~L~~~~~~~dvVIn~~GPf~~ 64 (138)
.+....|+.|.. ...+.++++|+||.++|.-..
T Consensus 45 a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVVitAG~~~~ 88 (324)
T TIGR01758 45 LEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRK 88 (324)
T ss_pred cceeEeehhcccchhcCceeccCChHHHhCCCCEEEEcCCCCCC
Confidence 566677776665 446889999999999997544
No 306
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.31 E-value=5 Score=30.04 Aligned_cols=33 Identities=9% Similarity=0.060 Sum_probs=27.5
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|.||+++|..
T Consensus 55 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 94 (248)
T PRK05557 55 GKALAVQGDVSDAESVERAVDEAKAEFGGVDILVNNAGIT 94 (248)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 457788889999999988877 469999999863
No 307
>PRK06500 short chain dehydrogenase; Provisional
Probab=75.22 E-value=5 Score=30.38 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=25.5
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
++.++++|+.|.+++.++++ +.|++||++|.
T Consensus 53 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 90 (249)
T PRK06500 53 SALVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGV 90 (249)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 56788999999988776655 46999999985
No 308
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.06 E-value=2.9 Score=32.96 Aligned_cols=29 Identities=7% Similarity=0.062 Sum_probs=24.6
Q ss_pred ceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 33 RTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++++|+.|++++.++++. .|++||++|-
T Consensus 60 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 60 FVLPCDVEDIASVDAVFEALEKKWGKLDFVVHAIGF 95 (271)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 4688999999998888764 6999999984
No 309
>PRK05872 short chain dehydrogenase; Provisional
Probab=75.02 E-value=3.5 Score=32.85 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=26.0
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++..+++|+.|.+++.++++ ..|+|||++|..
T Consensus 58 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~vI~nAG~~ 96 (296)
T PRK05872 58 RVLTVVADVTDLAAMQAAAEEAVERFGGIDVVVANAGIA 96 (296)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 45566799999999988876 369999999964
No 310
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.91 E-value=4.1 Score=31.79 Aligned_cols=31 Identities=6% Similarity=0.020 Sum_probs=26.0
Q ss_pred cceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 32 NRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
...+++|+.|++++.++++ +.|++||++|..
T Consensus 58 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 58 ELVFRCDVASDDEINQVFADLGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHHhCCCcEEEECCccC
Confidence 4578999999999988875 369999999964
No 311
>PRK07775 short chain dehydrogenase; Provisional
Probab=74.89 E-value=4.3 Score=31.79 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=27.2
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
++.++.+|++|++++.++++ +.|++|+++|-.
T Consensus 60 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~ 98 (274)
T PRK07775 60 EAVAFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAGDT 98 (274)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 56788999999999998887 469999999853
No 312
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=74.81 E-value=6 Score=24.57 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 66 GEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 66 ~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
.+.+++.|.+.|-..+=+|+-..+... .++.+.+++.|+.+++|+=+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~--~~~~~~~~~~gi~~i~G~E~ 63 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGA--VEFYKAAKKAGIKPIIGLEA 63 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCH--HHHHHHHHHcCCeEEEEEEE
Confidence 368999999999999988776533222 24446677789999998743
No 313
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=74.77 E-value=8.7 Score=30.50 Aligned_cols=50 Identities=8% Similarity=0.145 Sum_probs=36.5
Q ss_pred CCcceEEeeCCC------HHHHHHHHhcCcEEEecCCCccch-------------hHHHHHHHHHcCCC
Q psy12849 30 RTNRTTVVNTIN------ESSILIMAKKCRVILNCVGPYTWY-------------GEAVVKACIEAKTH 79 (138)
Q Consensus 30 ~~~~~~~~D~~d------~~~L~~~~~~~dvVIn~~GPf~~~-------------~~~v~~Aci~~g~h 79 (138)
.++.++..|+.+ .+.+..+.+++|+||||+|+.... ...++++|.+.++.
T Consensus 61 ~~v~~~~~D~~~~~~gl~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~ 129 (367)
T TIGR01746 61 ERIEVVAGDLSEPRLGLSDAEWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAK 129 (367)
T ss_pred CCEEEEeCCcCcccCCcCHHHHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCc
Confidence 468888899864 467788889999999999864310 23567888887654
No 314
>PRK06125 short chain dehydrogenase; Provisional
Probab=74.73 E-value=4.8 Score=31.00 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=27.8
Q ss_pred CCcceEEeeCCCHHHHHHHHhc---CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK---CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++. .|++||++|..
T Consensus 57 ~~~~~~~~D~~~~~~~~~~~~~~g~id~lv~~ag~~ 92 (259)
T PRK06125 57 VDVAVHALDLSSPEAREQLAAEAGDIDILVNNAGAI 92 (259)
T ss_pred CceEEEEecCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3578899999999999888774 79999999853
No 315
>PRK09242 tropinone reductase; Provisional
Probab=74.73 E-value=3.2 Score=31.86 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.7
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++.+|+.+++++.++++. .|++||++|.
T Consensus 60 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 60 REVHGLAADVSDDEDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4678889999999988777764 5999999985
No 316
>PRK06057 short chain dehydrogenase; Provisional
Probab=74.73 E-value=3.9 Score=31.39 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=26.0
Q ss_pred ceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 33 RTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++++|+.|++++.++++. .|++||++|..
T Consensus 54 ~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 90 (255)
T PRK06057 54 LFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNAGIS 90 (255)
T ss_pred cEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 5789999999999988874 59999999854
No 317
>PLN02572 UDP-sulfoquinovose synthase
Probab=74.70 E-value=4.4 Score=34.74 Aligned_cols=48 Identities=13% Similarity=-0.055 Sum_probs=37.7
Q ss_pred CcceEEeeCCCHHHHHHHHhc--CcEEEecCCC----ccc-------------h--hHHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK--CRVILNCVGP----YTW-------------Y--GEAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GP----f~~-------------~--~~~v~~Aci~~g~ 78 (138)
+++++..|+.|.+.+.+++++ +|+|||+++. +.. . ...++++|.+.|+
T Consensus 114 ~v~~v~~Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv 182 (442)
T PLN02572 114 EIELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAP 182 (442)
T ss_pred cceEEECCCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999995 7999999954 211 0 2356889988875
No 318
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.59 E-value=2.9 Score=34.60 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=27.8
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
.+..|.+.++++|+||.++|--.......++ ..+..|.+++
T Consensus 194 ~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~ 237 (293)
T PRK14185 194 RSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRV 237 (293)
T ss_pred CCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCccc
Confidence 4456899999999999999966555433333 3444555554
No 319
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=74.56 E-value=9.2 Score=26.88 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=32.0
Q ss_pred HHHHHHHhc--CcEEEecCCC-c----cchhHHHHHHHHHcCCCeeeC
Q psy12849 43 SSILIMAKK--CRVILNCVGP-Y----TWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 43 ~~L~~~~~~--~dvVIn~~GP-f----~~~~~~v~~Aci~~g~hYvDi 83 (138)
..+..+++. .+.|||+-.| - ...+..+.++|++.+++|+..
T Consensus 60 ~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Tt 107 (115)
T cd01422 60 QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATN 107 (115)
T ss_pred hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEc
Confidence 446666664 7999999865 2 234789999999999999876
No 320
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=74.41 E-value=4.1 Score=34.23 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=39.3
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
++......|++.+.=--.+.|+|+-|+|.|.. ...+...+++|+-.||++.-
T Consensus 77 ~i~v~~~~~p~~~~w~~~gvDiVie~tG~~~s--~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 77 PVTVFGIRNPEDIPWGEAGADFVVESTGVFTD--KDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred EEEEEEcCCcccCcccccCCCEEEEcccchhh--HHHHHHHHHCCCEEEEeCCC
Confidence 55566666776654222589999999998854 46788999999999999843
No 321
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=74.41 E-value=18 Score=30.82 Aligned_cols=102 Identities=13% Similarity=0.016 Sum_probs=63.3
Q ss_pred HHHhhhhcCCCCcceEEeeCC---CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC-ChHH-HHHHH
Q psy12849 20 FLQKASWFGVRTNRTTVVNTI---NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG-EPYF-MEYMQ 94 (138)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~D~~---d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg-e~~~-~~~~~ 94 (138)
+++--..+.....+++.+-+. +.+.|....++..+=+=+= .+ |..+++-.|+++|++-+=+.- ...- .+++
T Consensus 44 tv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iPlvAD--IH-Fd~~lAl~a~~~G~~~iRINPGNig~~~~~v- 119 (360)
T PRK00366 44 TVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVPLVAD--IH-FDYRLALAAAEAGADALRINPGNIGKRDERV- 119 (360)
T ss_pred HHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCCEEEe--cC-CCHHHHHHHHHhCCCEEEECCCCCCchHHHH-
Confidence 333333333334455555444 4455677777775322221 22 346899999999999988743 2212 2233
Q ss_pred HHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 95 YEYNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 95 ~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
.+.=+.|+++|+.+..|+-..|.+-++...|
T Consensus 120 ~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~y 150 (360)
T PRK00366 120 REVVEAAKDYGIPIRIGVNAGSLEKDLLEKY 150 (360)
T ss_pred HHHHHHHHHCCCCEEEecCCccChHHHHHHc
Confidence 3555889999999999988778887776643
No 322
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.37 E-value=22 Score=27.77 Aligned_cols=96 Identities=10% Similarity=-0.005 Sum_probs=59.2
Q ss_pred HHHHHHhhhhcCCCCcceEEee---------C--CCHHHHHHHHhcCcEEEecCC-------Cccch-----------hH
Q psy12849 17 IFLFLQKASWFGVRTNRTTVVN---------T--INESSILIMAKKCRVILNCVG-------PYTWY-----------GE 67 (138)
Q Consensus 17 ~~~~~~~a~~~~~~~~~~~~~D---------~--~d~~~L~~~~~~~dvVIn~~G-------Pf~~~-----------~~ 67 (138)
+-..++.++++|.+.+++...+ . .+.+++.+.++...+-|.+.+ |+... -.
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~ 97 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMK 97 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHH
Confidence 3456777888887666654221 1 234668888888877666432 11111 14
Q ss_pred HHHHHHHHcCCCeeeCCCCh--------HHHHHH---HHHhHHHHHhCCCEEEeCC
Q psy12849 68 AVVKACIEAKTHHVDITGEP--------YFMEYM---QYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 68 ~v~~Aci~~g~hYvDisge~--------~~~~~~---~~~~~~~A~~~gv~iv~~~ 112 (138)
+.++.|.+.|+++|=+.|.. ...+.+ ..++-+.|++.|+.+...-
T Consensus 98 ~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 98 KAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 78889999999999875421 122222 2345567888999888753
No 323
>PRK06953 short chain dehydrogenase; Provisional
Probab=74.35 E-value=5.1 Score=30.12 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=26.7
Q ss_pred CcceEEeeCCCHHHHHHHHh-----cCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAK-----KCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-----~~dvVIn~~GPf 62 (138)
.++++.+|+.+.+++.+++. ..|++|+++|++
T Consensus 45 ~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~~ 81 (222)
T PRK06953 45 GAEALALDVADPASVAGLAWKLDGEALDAAVYVAGVY 81 (222)
T ss_pred cceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCcc
Confidence 35689999999999988753 369999999976
No 324
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=73.99 E-value=25 Score=27.79 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=58.9
Q ss_pred HHhhhhcCCCCcceEEeeCCCH---HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHh
Q psy12849 21 LQKASWFGVRTNRTTVVNTINE---SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEY 97 (138)
Q Consensus 21 ~~~a~~~~~~~~~~~~~D~~d~---~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~ 97 (138)
++-++.+-...++.+.+.++.+ ++++.+.+..-=++=-+| +.....-++.++++|..++=.=|-. .++.
T Consensus 28 ~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAG--TVL~~~q~~~a~~aGa~fiVsP~~~---~ev~--- 99 (211)
T COG0800 28 LPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAG--TVLNPEQARQAIAAGAQFIVSPGLN---PEVA--- 99 (211)
T ss_pred HHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccc--cccCHHHHHHHHHcCCCEEECCCCC---HHHH---
Confidence 3334444345677777777655 445555555543333444 4555677899999999987653332 2222
Q ss_pred HHHHHhCCCEEEeCCCCccchHhHHHH
Q psy12849 98 NTRAQESEVCVVSACGIETLPIDMGVL 124 (138)
Q Consensus 98 ~~~A~~~gv~iv~~~G~d~~p~dl~~~ 124 (138)
+.|..+|+.++|||. .|+.++..
T Consensus 100 -~~a~~~~ip~~PG~~---TptEi~~A 122 (211)
T COG0800 100 -KAANRYGIPYIPGVA---TPTEIMAA 122 (211)
T ss_pred -HHHHhCCCcccCCCC---CHHHHHHH
Confidence 457788999999998 78887763
No 325
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=73.94 E-value=12 Score=28.59 Aligned_cols=38 Identities=5% Similarity=-0.084 Sum_probs=31.3
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
..++++++|+||.|..++. .-..+-+.|.+.|++++..
T Consensus 104 ~~~~~~~~dvVi~~~~~~~-~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 104 PEEFFSQFDVVVATELSRA-ELVKINELCRKLGVKFYAT 141 (197)
T ss_pred HHHHHhCCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEE
Confidence 4678899999999997754 3357889999999999876
No 326
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=73.55 E-value=5.8 Score=32.10 Aligned_cols=101 Identities=10% Similarity=0.061 Sum_probs=56.2
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC--CChHHHHHHHHHhHHH
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT--GEPYFMEYMQYEYNTR 100 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis--ge~~~~~~~~~~~~~~ 100 (138)
.++..+.+|+.|.+++.++++ +.|++||-||-+. |.++.++-.+.=-..||+. |--..++.+.- +-.
T Consensus 53 ~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLvNNAGl~~--g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP--~m~ 128 (246)
T COG4221 53 GAALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLAL--GDPLDEADLDDWDRMIDTNVKGLLNGTRAVLP--GMV 128 (246)
T ss_pred CceEEEeeccCCHHHHHHHHHHHHHhhCcccEEEecCCCCc--CChhhhCCHHHHHHHHHHHHHHHHHHHHHhhh--HHH
Confidence 467899999999999777777 4799999999654 3566655444333333321 11111111110 112
Q ss_pred HHhCCCEEEeC--CCCccchHh---HHHHHHHHHhhhhc
Q psy12849 101 AQESEVCVVSA--CGIETLPID---MGVLMLQDSFEGHS 134 (138)
Q Consensus 101 A~~~gv~iv~~--~G~d~~p~d---l~~~~~~~~~~~~~ 134 (138)
+++.|-.+-.+ +|..+.|+. ....+..+.|...|
T Consensus 129 ~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~aV~~fs~~L 167 (246)
T COG4221 129 ERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGL 167 (246)
T ss_pred hcCCceEEEeccccccccCCCCccchhhHHHHHHHHHHH
Confidence 45566333333 455566654 23356666665544
No 327
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.41 E-value=27 Score=28.18 Aligned_cols=53 Identities=15% Similarity=-0.008 Sum_probs=24.6
Q ss_pred CcEEEecCCCccchhHHHHHH---HHHcCCCeeeCCCC-hHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 52 CRVILNCVGPYTWYGEAVVKA---CIEAKTHHVDITGE-PYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 52 ~dvVIn~~GPf~~~~~~v~~A---ci~~g~hYvDisge-~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
+|+|+.|+ |-...-..+++. .+..|.-+||.+.. +...++ +.++++++|+.++
T Consensus 60 ~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~----~~~~~~~~g~~~~ 116 (301)
T PRK09599 60 PRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIR----RAELLAEKGIHFV 116 (301)
T ss_pred CCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHH----HHHHHHHcCCEEE
Confidence 56777777 322111233322 23345667776433 323322 2345555666554
No 328
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=73.37 E-value=7.8 Score=30.25 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=38.2
Q ss_pred CcceEEeeCCCHHHHHHHHhcC-cEEEecCCCccchh-----------------HHHHHHHHHcCC
Q psy12849 31 TNRTTVVNTINESSILIMAKKC-RVILNCVGPYTWYG-----------------EAVVKACIEAKT 78 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~-dvVIn~~GPf~~~~-----------------~~v~~Aci~~g~ 78 (138)
.+.++..|+.|.+.+.+.++.+ |+||++++...... .+++++|.+.|+
T Consensus 43 ~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~ 108 (314)
T COG0451 43 GVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGV 108 (314)
T ss_pred ccceeeecccchHHHHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4678899999999999999999 99999999875332 246788887554
No 329
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=73.29 E-value=28 Score=30.39 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=33.9
Q ss_pred cceEEeeCCCHHHHHHHH-------hcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 32 NRTTVVNTINESSILIMA-------KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~-------~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
.+.+.+=+.+.+.++.++ +.-|++|++.--++....+..+.+.+.|.||||
T Consensus 55 ~~~Ii~mv~~g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvd 112 (459)
T PRK09287 55 PRKILLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIG 112 (459)
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEe
Confidence 445555455554444443 446899998754555566778888889999999
No 330
>PRK07201 short chain dehydrogenase; Provisional
Probab=73.25 E-value=4.9 Score=35.45 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.++++ +.|++||++|.
T Consensus 420 ~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~li~~Ag~ 458 (657)
T PRK07201 420 GTAHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAGR 458 (657)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 357889999999999999888 47999999994
No 331
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=73.23 E-value=4.2 Score=34.12 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=30.3
Q ss_pred hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
+++|+|+.|++ -. ....++..+.+.|+..||.|++.
T Consensus 65 ~~~Dvvf~a~p-~~-~s~~~~~~~~~~g~~VIDlS~~f 100 (336)
T PRK08040 65 SQAQLAFFVAG-RE-ASAAYAEEATNAGCLVIDSSGLF 100 (336)
T ss_pred cCCCEEEECCC-HH-HHHHHHHHHHHCCCEEEECChHh
Confidence 68999999994 33 55688888899999999999874
No 332
>PRK07060 short chain dehydrogenase; Provisional
Probab=73.15 E-value=5.9 Score=29.90 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=27.1
Q ss_pred CcceEEeeCCCHHHHHHHHhc---CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK---CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf 62 (138)
...++.+|+.+++++.++++. .|+|||++|..
T Consensus 54 ~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag~~ 88 (245)
T PRK07060 54 GCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAGIA 88 (245)
T ss_pred CCeEEEecCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence 356889999999999998874 79999999854
No 333
>PLN02438 inositol-3-phosphate synthase
Probab=73.11 E-value=6.3 Score=35.02 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=41.7
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
..+.|.+.++.-+- -+-|...+ +.||+++||.||..+-...+.- .+-+.|+++|+.+.--
T Consensus 246 t~~~l~~ai~~~~~---eispS~~Y----A~AAl~eG~~fVNgsP~~t~vP----~~~elA~~~gvpi~GD 305 (510)
T PLN02438 246 TMENLLASIEKDEA---EISPSTLY----ALACILEGVPFINGSPQNTFVP----GVIELAVKKNSLIGGD 305 (510)
T ss_pred CHHHHHHHHhcCCC---cCChHHHH----HHHHHHcCCCeEecCCccccCh----hhHHHHHHcCCCEecc
Confidence 45677777776543 23355544 7899999999999887656653 3346788899986543
No 334
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=73.10 E-value=43 Score=29.61 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=33.9
Q ss_pred cceEEeeCCCHHHHHHHH-------hcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 32 NRTTVVNTINESSILIMA-------KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~-------~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
.+.+.+=+.+.+.++.++ +.-+++|+|.-=+.....+..+.+.+.|.||+|
T Consensus 73 ~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fld 130 (493)
T PLN02350 73 PRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLG 130 (493)
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 455555555555554443 345788888755455567778888888899988
No 335
>KOG1430|consensus
Probab=72.97 E-value=5.7 Score=33.78 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=41.8
Q ss_pred CCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCccchh---------------HHHHHHHHHcCCCe
Q psy12849 29 VRTNRTTVVNTINESSILIMAKKCRVILNCVGPYTWYG---------------EAVVKACIEAKTHH 80 (138)
Q Consensus 29 ~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~---------------~~v~~Aci~~g~hY 80 (138)
..+++....|+.|...+.+.+.++-||..+++|...+. ..++++|.+.|+.-
T Consensus 54 ~~~v~~~~~D~~~~~~i~~a~~~~~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~ 120 (361)
T KOG1430|consen 54 SGRVTVILGDLLDANSISNAFQGAVVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKR 120 (361)
T ss_pred CCceeEEecchhhhhhhhhhccCceEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCCE
Confidence 46788999999999999999999966666667665432 47899999998864
No 336
>PRK06483 dihydromonapterin reductase; Provisional
Probab=72.95 E-value=4.7 Score=30.53 Aligned_cols=30 Identities=10% Similarity=0.198 Sum_probs=25.5
Q ss_pred cceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 32 NRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
..++.+|+.|++++.+++++ .|++||++|-
T Consensus 48 ~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~ag~ 84 (236)
T PRK06483 48 AQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNASD 84 (236)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECCcc
Confidence 57889999999998887764 6999999984
No 337
>KOG1208|consensus
Probab=72.92 E-value=8.5 Score=31.92 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=31.5
Q ss_pred CCCCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCccch
Q psy12849 28 GVRTNRTTVVNTINESSILIMAKK-------CRVILNCVGPYTWY 65 (138)
Q Consensus 28 ~~~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~~~ 65 (138)
...++.++++|+.+.++++++..+ -|+.||.||=+...
T Consensus 84 ~~~~i~~~~lDLssl~SV~~fa~~~~~~~~~ldvLInNAGV~~~~ 128 (314)
T KOG1208|consen 84 ANQKIRVIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMAPP 128 (314)
T ss_pred CCCceEEEECCCCCHHHHHHHHHHHHhcCCCccEEEeCcccccCC
Confidence 346788899999999999999885 59999999966543
No 338
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=72.85 E-value=2.6 Score=35.02 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=42.5
Q ss_pred HHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHH-------HHHHHhHHHHHhCCCEEEeCCC
Q psy12849 47 IMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFME-------YMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 47 ~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~-------~~~~~~~~~A~~~gv~iv~~~G 113 (138)
..++++|+|..|+ |-. .....+....+.|+.-||+|++.-+-. ++-..+.++.+.+.+...|+|=
T Consensus 46 ~~~~~~DvvFlal-p~~-~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~~~~~IanPgC~ 117 (313)
T PRK11863 46 ELLNAADVAILCL-PDD-AAREAVALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGCY 117 (313)
T ss_pred hhhcCCCEEEECC-CHH-HHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhhcCCeEEcCCcH
Confidence 4557899999999 644 556788888899999999999853321 1101123344555666666554
No 339
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.69 E-value=4.4 Score=30.60 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=26.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++++|+.|++++.++++. .|+|||++|.
T Consensus 54 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 54 TEVRGYAANVTDEEDVEATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred CceEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3577899999999988777764 5999999984
No 340
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.65 E-value=2.8 Score=34.56 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=26.6
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
.+..|.+.++++|+||.++|--.......++ .++..|.+|+
T Consensus 190 ~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~ 233 (287)
T PRK14181 190 QSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRV 233 (287)
T ss_pred CCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccc
Confidence 3456899999999999999965544333332 2344555554
No 341
>PRK08017 oxidoreductase; Provisional
Probab=72.53 E-value=39 Score=25.54 Aligned_cols=31 Identities=13% Similarity=0.036 Sum_probs=24.7
Q ss_pred CcceEEeeCCCHHHHHHHHhc--------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK--------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GP 61 (138)
.+.++++|+.|++++..++++ .+.++|++|.
T Consensus 46 ~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~ag~ 84 (256)
T PRK08017 46 GFTGILLDLDDPESVERAADEVIALTDNRLYGLFNNAGF 84 (256)
T ss_pred CCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEECCCC
Confidence 467899999999988776653 4789999984
No 342
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=72.42 E-value=13 Score=24.82 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=30.5
Q ss_pred cEEEecCCCccchhHHHHHHHH----H-c----------CCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 53 RVILNCVGPYTWYGEAVVKACI----E-A----------KTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 53 dvVIn~~GPf~~~~~~v~~Aci----~-~----------g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
-+|+..-||......+-++..+ . . +++|+|.+|-.... ....+++++|..+..
T Consensus 9 ~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssgi~~L~-----~~~~~~~~~g~~l~l 76 (106)
T TIGR02886 9 VLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSGLGVIL-----GRYKKIKNEGGEVIV 76 (106)
T ss_pred EEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchHHHHHH-----HHHHHHHHcCCEEEE
Confidence 3566777776544333333322 2 1 67788887764433 445667778877764
No 343
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=72.41 E-value=17 Score=30.87 Aligned_cols=102 Identities=9% Similarity=0.007 Sum_probs=62.8
Q ss_pred HHHhhhhcCCCCcceEEeeCC---CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC-ChHHHHHHHH
Q psy12849 20 FLQKASWFGVRTNRTTVVNTI---NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG-EPYFMEYMQY 95 (138)
Q Consensus 20 ~~~~a~~~~~~~~~~~~~D~~---d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg-e~~~~~~~~~ 95 (138)
+++--..+.....+++.+-+- +.+.|....+++.+=+-+= .+ |..+.+..|++.|++-+=+.- ....-+++ .
T Consensus 36 tv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVAD--IH-Fd~~lAl~a~~~g~dkiRINPGNig~~e~v-~ 111 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVAD--IH-FDYRLAALAMAKGVAKVRINPGNIGFRERV-R 111 (346)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEe--eC-CCcHHHHHHHHhccCeEEECCCCCCCHHHH-H
Confidence 333333333334455555454 4455777777776433222 22 225788999999999988742 22222232 2
Q ss_pred HhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 96 EYNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 96 ~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
+.=+.|+++|+.+..|+-..|.+-++.-.|
T Consensus 112 ~vv~~ak~~~ipIRIGVN~GSL~~~~~~ky 141 (346)
T TIGR00612 112 DVVEKARDHGKAMRIGVNHGSLERRLLEKY 141 (346)
T ss_pred HHHHHHHHCCCCEEEecCCCCCcHHHHHHc
Confidence 455789999999999988778887766543
No 344
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=72.38 E-value=4.9 Score=30.76 Aligned_cols=31 Identities=13% Similarity=0.211 Sum_probs=26.6
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.|++++.+++.. .|++||++|.
T Consensus 59 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 59 KAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 567788999999999988864 6999999985
No 345
>PRK07023 short chain dehydrogenase; Provisional
Probab=72.35 E-value=5.2 Score=30.40 Aligned_cols=33 Identities=6% Similarity=0.046 Sum_probs=26.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-----------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-----------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-----------~dvVIn~~GPf 62 (138)
.++.++++|+.|++++.+++.+ .+++||++|..
T Consensus 45 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~ 88 (243)
T PRK07023 45 ERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGTV 88 (243)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceEEEEcCccc
Confidence 3578899999999999986543 57899999864
No 346
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=72.32 E-value=42 Score=25.79 Aligned_cols=106 Identities=8% Similarity=-0.041 Sum_probs=60.1
Q ss_pred HHHhhhhcCCCCcceEE--eeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHH-cCCCeeeC----CCChHHHHH
Q psy12849 20 FLQKASWFGVRTNRTTV--VNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIE-AKTHHVDI----TGEPYFMEY 92 (138)
Q Consensus 20 ~~~~a~~~~~~~~~~~~--~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~-~g~hYvDi----sge~~~~~~ 92 (138)
++++.+.+..-++.|+. +..+|.+.+.++-+...+-|-. +=.. ....-++..++ ..++++-+ +|-..-..
T Consensus 110 a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~L~~~~~~pIa~-dEs~-~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~- 186 (229)
T cd00308 110 AIRLIRALEKYGLAWIEEPCAPDDLEGYAALRRRTGIPIAA-DESV-TTVDDALEALELGAVDILQIKPTRVGGLTESR- 186 (229)
T ss_pred HHHHHHHhhhcCCCeEECCCCccCHHHHHHHHhhCCCCEEe-CCCC-CCHHHHHHHHHcCCCCEEecCccccCCHHHHH-
Confidence 33444444333455555 3445778888888776555443 3211 22223333444 45666543 23222222
Q ss_pred HHHHhHHHHHhCCCEEEeCCCCccchHhHHHHHHHHHhh
Q psy12849 93 MQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQDSFE 131 (138)
Q Consensus 93 ~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~~~~ 131 (138)
+.-+.|++.|+.+++++.+++..+.....+++..+.
T Consensus 187 ---~i~~~a~~~gi~~~~~~~~~s~i~~~a~~hlaa~~~ 222 (229)
T cd00308 187 ---RAADLAEAFGIRVMVHGTLESSIGTAAALHLAAALP 222 (229)
T ss_pred ---HHHHHHHHcCCEEeecCCCCCHHHHHHHHHHHHhCC
Confidence 334678999999999998888777777677765544
No 347
>PRK06101 short chain dehydrogenase; Provisional
Probab=72.16 E-value=6.8 Score=29.88 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=27.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhcC----cEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKC----RVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~----dvVIn~~GP 61 (138)
.++.++++|++|++++.+++++. |++|+++|.
T Consensus 46 ~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag~ 81 (240)
T PRK06101 46 ANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAGD 81 (240)
T ss_pred CCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCcc
Confidence 35788999999999999999873 778888874
No 348
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=72.07 E-value=39 Score=28.10 Aligned_cols=94 Identities=10% Similarity=0.052 Sum_probs=52.5
Q ss_pred CcceEE--eeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHH-cCCCeeeC----CCChHHHHHHHHHhHHHHHh
Q psy12849 31 TNRTTV--VNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIE-AKTHHVDI----TGEPYFMEYMQYEYNTRAQE 103 (138)
Q Consensus 31 ~~~~~~--~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~-~g~hYvDi----sge~~~~~~~~~~~~~~A~~ 103 (138)
++.|+. +..+|.+.+..+-+.+.+=|-. |=. .++..-++..++ .+++++-+ +|-..-.. +....|++
T Consensus 214 ~~~~iEeP~~~~d~~~~~~l~~~~~~pia~-dE~-~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~----~i~~lA~~ 287 (368)
T TIGR02534 214 GVELIEQPTPAENREALARLTRRFNVPIMA-DES-VTGPADALAIAKASAADVFALKTTKSGGLLESK----KIAAIAEA 287 (368)
T ss_pred ChhheECCCCcccHHHHHHHHHhCCCCEEe-Ccc-cCCHHHHHHHHHhCCCCEEEEcccccCCHHHHH----HHHHHHHH
Confidence 444444 3345677777776665544421 211 122222334444 45787665 33322222 44578999
Q ss_pred CCCEEEeCCCCccchHhHHHHHHHHHh
Q psy12849 104 SEVCVVSACGIETLPIDMGVLMLQDSF 130 (138)
Q Consensus 104 ~gv~iv~~~G~d~~p~dl~~~~~~~~~ 130 (138)
.|+.+.++|-+++..+.....+++..+
T Consensus 288 ~gi~~~~~~~~~s~i~~aa~~h~~a~~ 314 (368)
T TIGR02534 288 AGIALYGGTMLEGPIGTIASAHFFATF 314 (368)
T ss_pred cCCceeeecchhhHHHHHHHHHHHHhC
Confidence 999999998776666665555655443
No 349
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=72.03 E-value=10 Score=31.18 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=35.3
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHH---HHH---HcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVK---ACI---EAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci---~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
..+.++++|+||.|+ |....-+.|.. -.+ +.|+.+||+|--.|-.- .++.+.+++.|..++
T Consensus 51 ~~eaa~~aDvVitmv-~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a---~~~a~~~~~~G~~~l 117 (286)
T COG2084 51 PAEAAAEADVVITML-PDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETA---RELAAALAAKGLEFL 117 (286)
T ss_pred HHHHHHhCCEEEEec-CCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHH---HHHHHHHHhcCCcEE
Confidence 346777889999999 44333233332 122 24888899855444332 244466677776655
No 350
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.89 E-value=4.9 Score=31.35 Aligned_cols=30 Identities=7% Similarity=0.037 Sum_probs=25.2
Q ss_pred ceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 33 RTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
....+|+.|++++.++++. .|++||++|-.
T Consensus 59 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~ 95 (260)
T PRK06997 59 LVFPCDVASDEQIDALFASLGQHWDGLDGLVHSIGFA 95 (260)
T ss_pred ceeeccCCCHHHHHHHHHHHHHHhCCCcEEEEccccC
Confidence 4688999999999888863 69999999853
No 351
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.83 E-value=4.6 Score=33.35 Aligned_cols=39 Identities=8% Similarity=0.232 Sum_probs=26.5
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....|.+.++++|+||.++|--.... .-.++.|+-.||+
T Consensus 192 ~T~~L~~~~~~ADIvV~AvGkp~~i~----~~~vk~GavVIDv 230 (288)
T PRK14171 192 KTHNLSSITSKADIVVAAIGSPLKLT----AEYFNPESIVIDV 230 (288)
T ss_pred CCCCHHHHHhhCCEEEEccCCCCccC----HHHcCCCCEEEEe
Confidence 34468999999999999999554433 3344555555554
No 352
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=71.75 E-value=5.3 Score=27.62 Aligned_cols=38 Identities=11% Similarity=0.072 Sum_probs=27.7
Q ss_pred hcCcEEEecCCCccchhHH--HHHHHHHcCCCeeeCCCChH
Q psy12849 50 KKCRVILNCVGPYTWYGEA--VVKACIEAKTHHVDITGEPY 88 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~--v~~Aci~~g~hYvDisge~~ 88 (138)
.++|+|+-|+++- .+.+. .+..+++.|+..||+++...
T Consensus 64 ~~~DvV~~~~~~~-~~~~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHG-VSKEIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcH-HHHHHHHHHHhhhcCCCEEEECCcccc
Confidence 5899999999654 34332 13456789999999998743
No 353
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=71.71 E-value=4.1 Score=32.69 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=27.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
..+...+||+.|.+++++++.. -+++||+||=
T Consensus 50 p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNNAGI 88 (245)
T COG3967 50 PEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINNAGI 88 (245)
T ss_pred cchheeeecccchhhHHHHHHHHHhhCCchheeeecccc
Confidence 5778999999999988888763 5999999994
No 354
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=71.66 E-value=15 Score=27.39 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=36.0
Q ss_pred HHHHHHHhc-CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 43 SSILIMAKK-CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 43 ~~L~~~~~~-~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
+.++.+.+. .++.+.+-+-....+...++.+.++|++++=+-++.+. +.. .++-+.+++.|+.++
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~-~~~-~~~i~~~~~~g~~~~ 107 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPL-STI-KKAVKAAKKYGKEVQ 107 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCH-HHH-HHHHHHHHHcCCeEE
Confidence 445555443 35555554333333344578888889888887555432 111 233355667777776
No 355
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=71.60 E-value=19 Score=29.44 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCe-eeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHH-VDITGEPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hY-vDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
+.....++||+|+-.-|-.. ...++.|++.|+.- |-.||-.+-- +.++.+.+++ +.++.+.-|
T Consensus 63 ~~~~~~~~DV~IDFT~P~~~--~~~l~~~~~~~~~lVIGTTGf~~e~---~~~l~~~a~~--v~vv~a~Nf 126 (266)
T COG0289 63 LLLVKADADVLIDFTTPEAT--LENLEFALEHGKPLVIGTTGFTEEQ---LEKLREAAEK--VPVVIAPNF 126 (266)
T ss_pred hhhcccCCCEEEECCCchhh--HHHHHHHHHcCCCeEEECCCCCHHH---HHHHHHHHhh--CCEEEeccc
Confidence 55666789999999999654 47899999999765 5566654443 3355566666 555555555
No 356
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=71.46 E-value=40 Score=29.51 Aligned_cols=34 Identities=15% Similarity=-0.052 Sum_probs=20.2
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
++.-++||++.--+.....+..+.+.+.|.||||
T Consensus 88 L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvd 121 (467)
T TIGR00873 88 LEKGDIIIDGGNSHYPDTERRYKELKAKGILFVG 121 (467)
T ss_pred CCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEc
Confidence 3345677777642333334556666677777777
No 357
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=71.43 E-value=5.6 Score=32.08 Aligned_cols=33 Identities=6% Similarity=0.053 Sum_probs=27.2
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++.+|+.|.+++.++++. .|++||++|.+
T Consensus 53 ~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~iD~lI~nAG~~ 92 (314)
T TIGR01289 53 DSYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVY 92 (314)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEECCCcc
Confidence 3567889999999998888753 79999999953
No 358
>PRK08618 ornithine cyclodeaminase; Validated
Probab=71.33 E-value=1.8 Score=35.65 Aligned_cols=37 Identities=8% Similarity=0.067 Sum_probs=27.5
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
+.++++++|+||+|. |.. .+++..+++.|+|-.-+..
T Consensus 186 ~~~~~~~aDiVi~aT-~s~---~p~i~~~l~~G~hV~~iGs 222 (325)
T PRK08618 186 ADEAIEEADIIVTVT-NAK---TPVFSEKLKKGVHINAVGS 222 (325)
T ss_pred HHHHHhcCCEEEEcc-CCC---CcchHHhcCCCcEEEecCC
Confidence 456778999999999 644 2444489999999865543
No 359
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.22 E-value=24 Score=28.42 Aligned_cols=36 Identities=14% Similarity=0.153 Sum_probs=26.4
Q ss_pred HHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 48 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 48 ~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
.++.-+++|++..-.......+.+.+.+.|.+|+|.
T Consensus 83 ~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~da 118 (301)
T PRK09599 83 LLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDV 118 (301)
T ss_pred hCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeC
Confidence 344458899986434444567889999999999994
No 360
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.09 E-value=4.7 Score=33.16 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=26.9
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
.+..|...++++|+||.++|--.......+ +.|+-.||+
T Consensus 189 ~T~~l~~~~~~ADIvI~AvG~p~~i~~~~v----k~GavVIDv 227 (282)
T PRK14169 189 KTRNLKQLTKEADILVVAVGVPHFIGADAV----KPGAVVIDV 227 (282)
T ss_pred CCCCHHHHHhhCCEEEEccCCcCccCHHHc----CCCcEEEEe
Confidence 334588999999999999997665544444 344444444
No 361
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=70.98 E-value=9.1 Score=34.29 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=35.4
Q ss_pred eEEeeCCCHHHHHHHHh--cCcEEEecCCCcc---c----------------hhHHHHHHHHHcCCCee
Q psy12849 34 TTVVNTINESSILIMAK--KCRVILNCVGPYT---W----------------YGEAVVKACIEAKTHHV 81 (138)
Q Consensus 34 ~~~~D~~d~~~L~~~~~--~~dvVIn~~GPf~---~----------------~~~~v~~Aci~~g~hYv 81 (138)
+...|++|.+++.+.++ +.|+||||++.-. . -...++++|.+.|++.|
T Consensus 409 ~~~~~l~d~~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v 477 (668)
T PLN02260 409 YGKGRLEDRSSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMM 477 (668)
T ss_pred eeccccccHHHHHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEE
Confidence 34567889999999988 6899999997431 0 12468999999886554
No 362
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=70.89 E-value=7.6 Score=29.91 Aligned_cols=59 Identities=14% Similarity=0.156 Sum_probs=38.0
Q ss_pred cCcEEEecCCCccch-hHHHHHHHHHcCCCeee---------------CCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 51 KCRVILNCVGPYTWY-GEAVVKACIEAKTHHVD---------------ITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 51 ~~dvVIn~~GPf~~~-~~~v~~Aci~~g~hYvD---------------isge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
++-+|||.+|+-..- -..++++|.++||+.+| ++|.+..+..++..+-..-++-|+.++
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~~l~~~~~L~v~ 77 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLPLLGAELDLLVV 77 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhhcccccCCeEEE
Confidence 345899999975421 36899999999999988 455555555554444433333444443
No 363
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.82 E-value=14 Score=30.62 Aligned_cols=24 Identities=8% Similarity=-0.248 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCcEEEecCCCccch
Q psy12849 42 ESSILIMAKKCRVILNCVGPYTWY 65 (138)
Q Consensus 42 ~~~L~~~~~~~dvVIn~~GPf~~~ 65 (138)
..++.+.++++|+||.|+|.....
T Consensus 69 ~~~~~~~l~~aDiVI~tAG~~~~~ 92 (325)
T cd01336 69 TTDPEEAFKDVDVAILVGAMPRKE 92 (325)
T ss_pred cCCHHHHhCCCCEEEEeCCcCCCC
Confidence 456788899999999999976543
No 364
>KOG1209|consensus
Probab=70.78 E-value=10 Score=30.76 Aligned_cols=85 Identities=12% Similarity=0.177 Sum_probs=52.0
Q ss_pred CCcceEEeeCCCHHHHHHHHhc--------CcEEEecCCCccchhHHHHHHHHHc--CCCeeeCCCChHHHHHHHHHhHH
Q psy12849 30 RTNRTTVVNTINESSILIMAKK--------CRVILNCVGPYTWYGEAVVKACIEA--KTHHVDITGEPYFMEYMQYEYNT 99 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~--------~dvVIn~~GPf~~~~~~v~~Aci~~--g~hYvDisge~~~~~~~~~~~~~ 99 (138)
.++...++|+++++++..+... -|+++|-+|-. +..|.+++-+++ .|--+.+-|.....+.+. |.
T Consensus 52 ~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L~NNAG~~--C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~---h~ 126 (289)
T KOG1209|consen 52 FGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLLYNNAGQS--CTFPALDATIAAVEQCFKVNVFGHIRMCRALS---HF 126 (289)
T ss_pred hCCeeEEeccCChHHHHHHHHHHhhCCCCceEEEEcCCCCC--cccccccCCHHHHHhhhccceeeeehHHHHHH---HH
Confidence 4578999999999998887763 48999877632 222444443333 222233456666666554 56
Q ss_pred HHHhCCCEEEeC--CCCccchH
Q psy12849 100 RAQESEVCVVSA--CGIETLPI 119 (138)
Q Consensus 100 ~A~~~gv~iv~~--~G~d~~p~ 119 (138)
..+++|..+-.| +|+-|.|.
T Consensus 127 likaKGtIVnvgSl~~~vpfpf 148 (289)
T KOG1209|consen 127 LIKAKGTIVNVGSLAGVVPFPF 148 (289)
T ss_pred HHHccceEEEecceeEEeccch
Confidence 677777666555 45544443
No 365
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=70.67 E-value=19 Score=30.68 Aligned_cols=108 Identities=14% Similarity=0.112 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcceEEeeCCC---HHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC-CC
Q psy12849 11 TADILKIFLFLQKASWFGVRTNRTTVVNTIN---ESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT-GE 86 (138)
Q Consensus 11 ~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d---~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis-ge 86 (138)
+.|+..-+..++.....|. +++.+.+.+ .+++.+..++.++ =.++=+++. .+++-.|++.|++-+=+. |.
T Consensus 32 T~Dv~aTv~QI~~L~~aG~---dIVRvtv~~~e~A~A~~~Ik~~~~v--PLVaDiHf~-~rla~~~~~~g~~k~RINPGN 105 (361)
T COG0821 32 TADVEATVAQIKALERAGC---DIVRVTVPDMEAAEALKEIKQRLNV--PLVADIHFD-YRLALEAAECGVDKVRINPGN 105 (361)
T ss_pred cccHHHHHHHHHHHHHcCC---CEEEEecCCHHHHHHHHHHHHhCCC--CEEEEeecc-HHHHHHhhhcCcceEEECCcc
Confidence 4466544444444444444 455554444 4556666666643 223445555 789999999999888874 33
Q ss_pred hHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 87 PYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 87 ~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
..+-+++ ...=+.|+++|..+.+|+-+.|..-++.-.|
T Consensus 106 ig~~~~v-~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 106 IGFKDRV-REVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred cCcHHHH-HHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 3333333 3555789999999999999888888887765
No 366
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=70.19 E-value=34 Score=28.36 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=46.2
Q ss_pred CcceEEeeCCCH-----------HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC-CChHHHHHHHHHhH
Q psy12849 31 TNRTTVVNTINE-----------SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT-GEPYFMEYMQYEYN 98 (138)
Q Consensus 31 ~~~~~~~D~~d~-----------~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis-ge~~~~~~~~~~~~ 98 (138)
..+....|+.|. ....+.++++|+||.++|.-...|+. ..|+- .....++++..+..
T Consensus 45 ~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~~~~~g~t-----------R~dll~~N~~i~~~i~~~i~ 113 (323)
T cd00704 45 ALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGME-----------RADLLRKNAKIFKEQGEALN 113 (323)
T ss_pred ccceeeeehhhhcccccCCcEEecChHHHhCCCCEEEEeCCCCCCcCCc-----------HHHHHHHhHHHHHHHHHHHH
Confidence 355666666665 35678999999999999975543322 11111 11222333332222
Q ss_pred HHHHhCCCEEEeCCCCccchHhHHHHHHHHHh
Q psy12849 99 TRAQESEVCVVSACGIETLPIDMGVLMLQDSF 130 (138)
Q Consensus 99 ~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~~~ 130 (138)
+.|...++.++. + -|.|++++.+++..
T Consensus 114 ~~~~~~~iiivv--s---NPvD~~t~~~~k~s 140 (323)
T cd00704 114 KVAKPTVKVLVV--G---NPANTNALIALKNA 140 (323)
T ss_pred HhCCCCeEEEEe--C---CcHHHHHHHHHHHc
Confidence 222223444443 3 78999998876653
No 367
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=70.05 E-value=54 Score=26.15 Aligned_cols=53 Identities=6% Similarity=0.066 Sum_probs=37.1
Q ss_pred CCcceEEeeCCCHHHHHHHH----------hcCcEEEecCCCccchhHHHHHHHHHcCCCeee
Q psy12849 30 RTNRTTVVNTINESSILIMA----------KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~----------~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvD 82 (138)
.+.+++.+=+-+++.+..++ +.-.++|++.+=.......+.+.+.+.|.+|+|
T Consensus 51 ~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 51 EGADRVITMLPAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred hcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 34566666666655555544 234689999865555567888888889999999
No 368
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=69.99 E-value=5.1 Score=29.82 Aligned_cols=32 Identities=3% Similarity=0.074 Sum_probs=22.3
Q ss_pred CcceEEeeCCCHHHHHHHHhcC-------cEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKKC-------RVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~-------dvVIn~~GPf 62 (138)
++.++.+|+.|++++.+++++. +.||+++|..
T Consensus 54 ~v~~~~~Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 54 RVEYVQCDVTDPEAVAAALAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp EEEEEE--TTSHHHHHHHHHTSHTTSS-EEEEEE-----
T ss_pred ceeeeccCccCHHHHHHHHHHHHhccCCcceeeeeeeee
Confidence 7899999999999999999864 5799999864
No 369
>PRK12742 oxidoreductase; Provisional
Probab=69.69 E-value=7.1 Score=29.35 Aligned_cols=31 Identities=6% Similarity=0.208 Sum_probs=26.1
Q ss_pred cceEEeeCCCHHHHHHHHhc---CcEEEecCCCc
Q psy12849 32 NRTTVVNTINESSILIMAKK---CRVILNCVGPY 62 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~---~dvVIn~~GPf 62 (138)
..++.+|+.|.+++.++++. .|++||++|..
T Consensus 53 ~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~~ 86 (237)
T PRK12742 53 ATAVQTDSADRDAVIDVVRKSGALDILVVNAGIA 86 (237)
T ss_pred CeEEecCCCCHHHHHHHHHHhCCCcEEEECCCCC
Confidence 46788999999999888875 69999999853
No 370
>PRK07985 oxidoreductase; Provisional
Probab=69.51 E-value=5.3 Score=31.88 Aligned_cols=31 Identities=6% Similarity=-0.020 Sum_probs=26.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.|++++.++++. .|++||++|.
T Consensus 101 ~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~~Ag~ 138 (294)
T PRK07985 101 KAVLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGK 138 (294)
T ss_pred eEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 567889999999998887764 5999999985
No 371
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=69.50 E-value=5.8 Score=30.79 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=23.4
Q ss_pred CcceEEeeCCCHHHHH----HHH-------hcCcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSIL----IMA-------KKCRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~----~~~-------~~~dvVIn~~GPf 62 (138)
+..++.+|+.|++++. +++ .+.|++||++|-+
T Consensus 53 ~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~g~iD~lv~nAG~~ 95 (267)
T TIGR02685 53 SAVTCQADLSNSATLFSRCEAIIDACFRAFGRCDVLVNNASAF 95 (267)
T ss_pred ceEEEEccCCCchhhHHHHHHHHHHHHHccCCceEEEECCccC
Confidence 4557889999987653 333 2579999999953
No 372
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.46 E-value=6.6 Score=32.30 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=27.5
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
+.+..|.+.++++|+||.++|--.......++ ..++.|++|+
T Consensus 189 s~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~ 233 (281)
T PRK14183 189 IFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRT 233 (281)
T ss_pred CCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeecccc
Confidence 34456889999999999999965544333332 3444555554
No 373
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=69.45 E-value=20 Score=27.01 Aligned_cols=89 Identities=13% Similarity=0.003 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhcCCCCcceEEee--CC---CHHHHHHHHhc---CcEEEec--CCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 16 KIFLFLQKASWFGVRTNRTTVVN--TI---NESSILIMAKK---CRVILNC--VGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~D--~~---d~~~L~~~~~~---~dvVIn~--~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
++-.+++.++.+ ...+.++.+. +. -.+.+..+.+. ..+.++. .+|- .-.++.+.++|++||-+-+
T Consensus 10 ~~~~a~~~~~~l-~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~----~~~~~~~~~~Gad~i~vh~ 84 (206)
T TIGR03128 10 DIEEALELAEKV-ADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAG----EYEAEQAFAAGADIVTVLG 84 (206)
T ss_pred CHHHHHHHHHHc-ccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccch----HHHHHHHHHcCCCEEEEec
Confidence 344455566666 4567777774 21 13445555443 2455432 3332 2258889999999997666
Q ss_pred ChHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 86 EPYFMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 86 e~~~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
+.+-. .+ .+.-+.+++.|..++++
T Consensus 85 ~~~~~-~~-~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 85 VADDA-TI-KGAVKAAKKHGKEVQVD 108 (206)
T ss_pred cCCHH-HH-HHHHHHHHHcCCEEEEE
Confidence 54321 11 23335678888888876
No 374
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=69.44 E-value=9.7 Score=30.96 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=34.7
Q ss_pred CHHHHHHHHh-cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 41 NESSILIMAK-KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 41 d~~~L~~~~~-~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
+++.+..++. ++|+||+|.+++..- ..+.+.|.+.++.+|.+.|
T Consensus 110 ~~e~~~~ll~~~~D~VIdaiD~~~~k-~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 110 TPDNVAEYMSAGFSYVIDAIDSVRPK-AALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred ChhhHHHHhcCCCCEEEEcCCCHHHH-HHHHHHHHHcCCCEEEECC
Confidence 4566777775 699999999976533 4689999999999987655
No 375
>PRK07035 short chain dehydrogenase; Provisional
Probab=69.34 E-value=6.5 Score=29.97 Aligned_cols=31 Identities=6% Similarity=0.042 Sum_probs=26.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
++.++.+|+.|.+++.+++++ .|++||++|.
T Consensus 58 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 58 KAEALACHIGEMEQIDALFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 467889999999998887764 6999999984
No 376
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.33 E-value=7.8 Score=29.78 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=25.7
Q ss_pred CcceEEeeCCCHHHHHHHHh--------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK--------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~--------~~dvVIn~~GP 61 (138)
++...++|+.|++++.++++ ..|++||++|.
T Consensus 55 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 55 NVYSFQLKDFSQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred CeEEEEccCCCHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 46678899999999988764 46999999973
No 377
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=69.22 E-value=25 Score=29.38 Aligned_cols=43 Identities=7% Similarity=-0.086 Sum_probs=35.8
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
.+.+.+.++++++|+|+.|..-+.. -.-+-.+|.+.+..+|+.
T Consensus 97 ~~~~~l~~li~~~DvV~d~tDn~es-R~L~~~~~~~~~k~~I~a 139 (307)
T cd01486 97 KDVKRLEELIKDHDVIFLLTDSRES-RWLPTLLSAAKNKLVINA 139 (307)
T ss_pred cCHHHHHHHHhhCCEEEECCCCHHH-HHHHHHHHHHhCCcEEEE
Confidence 3677899999999999999976543 356789999999999984
No 378
>PRK06484 short chain dehydrogenase; Validated
Probab=69.17 E-value=12 Score=32.05 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=26.8
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
+..++.+|+.|++++.++++. .|++||++|..
T Consensus 316 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~nAg~~ 354 (520)
T PRK06484 316 EHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIA 354 (520)
T ss_pred ceeEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCc
Confidence 456789999999999888874 69999999853
No 379
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=69.16 E-value=8.3 Score=32.17 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
.|++++.=--.+.|+|+-|+|+|.. ...+..++++|+.-||++.-
T Consensus 78 ~~p~~~~w~~~gvDiVie~tG~~~s--~e~a~~~l~aGa~~V~~SaP 122 (325)
T TIGR01532 78 PTPEALPWRALGVDLVLDCTGVYGN--REQGERHIRAGAKRVLFSHP 122 (325)
T ss_pred CChhhccccccCCCEEEEccchhcc--HHHHHHHHHcCCeEEEecCC
Confidence 3666654222589999999999865 46789999999999999853
No 380
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.09 E-value=16 Score=29.89 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=38.9
Q ss_pred CcceEEeeCCCHHHHHHHHhc-----CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-----CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-----~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
..+++.+|-.+++.|.+.++. -.+.|.+.|=- ...-++..++.|++||.++.
T Consensus 202 GaDiI~LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgI---t~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 202 GADIVMCDNMSVEEIKEVVAYRNANYPHVLLEASGNI---TLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CCCEEEECCCCHHHHHHHHHHhhccCCCeEEEEECCC---CHHHHHHHHHcCCCEEEeCh
Confidence 567888898899988888884 26778888743 23456777799999988843
No 381
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.95 E-value=5.6 Score=32.93 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=27.5
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
.+..|.+.++++|+||.++|--......-++ .++.-|++|+
T Consensus 198 ~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~~ 241 (297)
T PRK14168 198 RSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRV 241 (297)
T ss_pred CCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCcc
Confidence 3456889999999999999865554333332 2445566665
No 382
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=68.84 E-value=5.9 Score=29.91 Aligned_cols=32 Identities=6% Similarity=0.014 Sum_probs=27.1
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++.++.+|+.|++++.+++++ .|.+|+++|-
T Consensus 48 ~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~li~~ag~ 86 (239)
T TIGR01831 48 GNARLLQFDVADRVACRTLLEADIAEHGAYYGVVLNAGI 86 (239)
T ss_pred CeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4688999999999999888774 4899999984
No 383
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=68.65 E-value=6.5 Score=33.09 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=39.9
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
.+...--.|+++|.=--.+.|+|+-|+|.|.. ..-+...+++|+--||+|+
T Consensus 72 ~i~~~~~~dp~~lpW~~~gvDiVle~tG~~~s--~~~a~~~l~aGak~V~iSa 122 (337)
T PTZ00023 72 KVHVFFEKDPAAIPWGKNGVDVVCESTGVFLT--KEKAQAHLKGGAKKVIMSA 122 (337)
T ss_pred EEEEEeCCChhhCCccccCCCEEEEecchhcC--HHHHHHHhhCCCEEEEeCC
Confidence 34445556777776444589999999998854 5678899999999999997
No 384
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=68.42 E-value=6.4 Score=33.92 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=38.1
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
++....-.|++++.=--.++|+||-|+|.|.. ...++..+++|+--||+|+
T Consensus 132 ~I~v~~~~dp~~~~w~~~gvDiVie~TG~f~s--~~~a~~hl~aGAkkV~iSa 182 (395)
T PLN03096 132 VIKVVSDRNPLNLPWGELGIDLVIEGTGVFVD--REGAGKHIQAGAKKVLITA 182 (395)
T ss_pred EEEEEEcCCcccccccccCCCEEEECcchhhh--HHHHHHHHHCCCEEEEeCC
Confidence 44445555666655222489999999999854 4678999999999999996
No 385
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=68.24 E-value=11 Score=32.85 Aligned_cols=64 Identities=19% Similarity=0.275 Sum_probs=40.2
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHHHHH
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLMLQD 128 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~~~~ 128 (138)
+.++|+||||+ |... ++ ...+. .-.+|+...+.-+. +-.+|+++|..++.|.+ |+.+.+..
T Consensus 388 l~~~DiVInat-P~g~---~~-~~~l~--~~v~D~~Y~P~~T~-----ll~~A~~~G~~~~~G~~-------Ml~~Qa~~ 448 (477)
T PRK09310 388 LHRIDIIINCL-PPSV---TI-PKAFP--PCVVDINTLPKHSP-----YTQYARSQGSSIIYGYE-------MFAEQALL 448 (477)
T ss_pred cCCCCEEEEcC-CCCC---cc-hhHHh--hhEEeccCCCCCCH-----HHHHHHHCcCEEECcHH-------HHHHHHHH
Confidence 35789999999 5432 22 11222 26889988765432 34678999999987765 44555554
Q ss_pred Hhh
Q psy12849 129 SFE 131 (138)
Q Consensus 129 ~~~ 131 (138)
+|+
T Consensus 449 ~f~ 451 (477)
T PRK09310 449 QFR 451 (477)
T ss_pred HHH
Confidence 444
No 386
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=68.23 E-value=25 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.088 Sum_probs=30.4
Q ss_pred HHHHHHHhc---CcEEEecCCCcc-----chhHHHHHHHHHcCCCeeeC
Q psy12849 43 SSILIMAKK---CRVILNCVGPYT-----WYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 43 ~~L~~~~~~---~dvVIn~~GPf~-----~~~~~v~~Aci~~g~hYvDi 83 (138)
..+..++++ .|+|||.--|.. ..|..+-++|++.+++|+--
T Consensus 57 ~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 57 PTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred cHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 334555544 699999876553 23789999999999999865
No 387
>PRK06153 hypothetical protein; Provisional
Probab=68.20 E-value=24 Score=30.43 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=36.7
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+..+...+ +++.+. .++++|+|+.|+.-+. .-.-+.+.|.+.|.++||+.-.
T Consensus 249 I~~~~~~I-~~~n~~-~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 249 IVPHPEYI-DEDNVD-ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred EEEEeecC-CHHHHH-HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 44444444 555555 6799999999997443 2345779999999999997433
No 388
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=68.15 E-value=15 Score=28.73 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=39.7
Q ss_pred HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
.|.+.++++|+||.++|-..+ .+=.--++.|+-.||+.-...+ ++.+++.-..+.|..|
T Consensus 119 ~l~~~~~~ADIVIsAvG~~~~---~i~~d~ik~GavVIDVGi~~dv--------d~~v~~~as~iTPvVG 177 (197)
T cd01079 119 MTLDCLSQSDVVITGVPSPNY---KVPTELLKDGAICINFASIKNF--------EPSVKEKASIYVPSIG 177 (197)
T ss_pred HHHHHhhhCCEEEEccCCCCC---ccCHHHcCCCcEEEEcCCCcCc--------cHhHHhhcCEeCCCcC
Confidence 488999999999999986544 1334567789999999655321 1334444446677655
No 389
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.01 E-value=5.7 Score=30.68 Aligned_cols=33 Identities=6% Similarity=0.013 Sum_probs=27.3
Q ss_pred CCcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
.++.++++|+.|.+++.+++.. .|++||++|-.
T Consensus 68 ~~~~~~~~D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~ 107 (256)
T PRK12859 68 VKVSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYS 107 (256)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 3677889999999999888863 59999999843
No 390
>PLN02775 Probable dihydrodipicolinate reductase
Probab=67.93 E-value=43 Score=27.66 Aligned_cols=56 Identities=16% Similarity=0.059 Sum_probs=38.9
Q ss_pred cCc-EEEecCCCccchhHHHHHHHHHcCCCeee-CCCChHHHHHHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 51 KCR-VILNCVGPYTWYGEAVVKACIEAKTHHVD-ITGEPYFMEYMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 51 ~~d-vVIn~~GPf~~~~~~v~~Aci~~g~hYvD-isge~~~~~~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
..+ |+|+-.-|-.. ...++.|++.|++.|= .||- .++ .+.+.++++++.++.+--|
T Consensus 79 ~~~~VvIDFT~P~a~--~~~~~~~~~~g~~~VvGTTG~---~~e---~l~~~~~~~~i~vv~apNf 136 (286)
T PLN02775 79 YPNLIVVDYTLPDAV--NDNAELYCKNGLPFVMGTTGG---DRD---RLLKDVEESGVYAVIAPQM 136 (286)
T ss_pred CCCEEEEECCChHHH--HHHHHHHHHCCCCEEEECCCC---CHH---HHHHHHhcCCccEEEECcc
Confidence 478 99999988654 4789999999999974 4553 322 2224455567777776666
No 391
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=67.91 E-value=13 Score=26.02 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=36.1
Q ss_pred hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCC
Q psy12849 50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV-SAC 112 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~ 112 (138)
...|+++=++.| ... ..+++.|.+.|+.++=+... ... .+.-+.|++.|+.++ |+|
T Consensus 54 ~~iDlavv~~~~-~~~-~~~v~~~~~~g~~~v~~~~g-~~~----~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 54 EPIDLAVVCVPP-DKV-PEIVDEAAALGVKAVWLQPG-AES----EELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp ST-SEEEE-S-H-HHH-HHHHHHHHHHT-SEEEE-TT-S------HHHHHHHHHTT-EEEESS-
T ss_pred CCCCEEEEEcCH-HHH-HHHHHHHHHcCCCEEEEEcc-hHH----HHHHHHHHHcCCEEEeCCc
Confidence 568999999954 333 58999999999999877444 222 344577899999998 655
No 392
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=67.88 E-value=7.8 Score=29.33 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=26.2
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|+||+++|..
T Consensus 50 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~a~~~ 89 (255)
T TIGR01963 50 GSVIYLVADVTKEDEIADMIAAAAAEFGGLDILVNNAGIQ 89 (255)
T ss_pred CceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 367889999999997766554 469999999864
No 393
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.86 E-value=6.7 Score=30.93 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=25.9
Q ss_pred cceEEeeCCCHHHHHHHHhc-------CcEEEecCCCc
Q psy12849 32 NRTTVVNTINESSILIMAKK-------CRVILNCVGPY 62 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf 62 (138)
..++++|+.|++++.++++. .|++||++|-+
T Consensus 62 ~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~ 99 (272)
T PRK08159 62 FVAGHCDVTDEASIDAVFETLEKKWGKLDFVVHAIGFS 99 (272)
T ss_pred ceEEecCCCCHHHHHHHHHHHHHhcCCCcEEEECCccc
Confidence 45789999999999988763 59999999843
No 394
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.86 E-value=6.6 Score=30.56 Aligned_cols=29 Identities=14% Similarity=0.109 Sum_probs=24.4
Q ss_pred ceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 33 RTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
.++++|+.|++++.++++. .|++||++|.
T Consensus 61 ~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 61 FVSELDVTNPKSISNLFDDIKEKWGSFDFLLHGMAF 96 (260)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcCCccEEEEcccc
Confidence 3578999999999888863 6999999984
No 395
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=67.76 E-value=69 Score=26.47 Aligned_cols=94 Identities=11% Similarity=0.011 Sum_probs=55.4
Q ss_pred CcceEE--eeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcC-CCeeeC----CCChHHHHHHHHHhHHHHHh
Q psy12849 31 TNRTTV--VNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAK-THHVDI----TGEPYFMEYMQYEYNTRAQE 103 (138)
Q Consensus 31 ~~~~~~--~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g-~hYvDi----sge~~~~~~~~~~~~~~A~~ 103 (138)
.+.|+. ++..|.+.+.++.+++.+-|-. |= ..++..-++..++.| ++++-+ +|-..-..+ .-..|++
T Consensus 215 ~~~~iEeP~~~~~~~~~~~l~~~~~~pia~-dE-~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~----~~~~a~~ 288 (365)
T cd03318 215 GVELIEQPVPRENLDGLARLRSRNRVPIMA-DE-SVSGPADAFELARRGAADVFSLKIAKSGGLRRAQK----VAAIAEA 288 (365)
T ss_pred CcceeeCCCCcccHHHHHHHHhhcCCCEEc-Cc-ccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHH----HHHHHHH
Confidence 455665 4556777788887776554432 21 222333455555554 666554 333333333 3356899
Q ss_pred CCCEEEeCCCCccchHhHHHHHHHHHh
Q psy12849 104 SEVCVVSACGIETLPIDMGVLMLQDSF 130 (138)
Q Consensus 104 ~gv~iv~~~G~d~~p~dl~~~~~~~~~ 130 (138)
.|+.+++++-+++..+...+.+++..+
T Consensus 289 ~gi~~~~~~~~~s~i~~aa~~hlaaa~ 315 (365)
T cd03318 289 AGIALYGGTMLESSIGTAASAHLFATL 315 (365)
T ss_pred cCCceeecCcchhHHHHHHHHHHHHhC
Confidence 999999998777777666666665443
No 396
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=67.52 E-value=8.7 Score=31.65 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCCeeeCCCChHH--HHHHHHHhHHHHHh----CCCEEEeCCCCccch------HhHHHHHHHHHhhhhc
Q psy12849 68 AVVKACIEAKTHHVDITGEPYF--MEYMQYEYNTRAQE----SEVCVVSACGIETLP------IDMGVLMLQDSFEGHS 134 (138)
Q Consensus 68 ~v~~Aci~~g~hYvDisge~~~--~~~~~~~~~~~A~~----~gv~iv~~~G~d~~p------~dl~~~~~~~~~~~~~ 134 (138)
.++++|+++|+.|+|++.-... .+.++ ++.-++ ..+.|..-+|++..+ .++.-.++.+.++.+|
T Consensus 37 ~il~~A~d~Gin~~DTA~~Yg~g~sE~il---G~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL 112 (316)
T COG0667 37 EILDAALDAGINFFDTADVYGDGRSEEIL---GEALKERGRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASL 112 (316)
T ss_pred HHHHHHHHcCCCEEECccccCCCchHHHH---HHHHhccCCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHH
Confidence 4999999999999999776553 33333 333333 347777779987642 3445556666665544
No 397
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=67.35 E-value=8 Score=32.09 Aligned_cols=36 Identities=11% Similarity=0.117 Sum_probs=29.7
Q ss_pred hcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 50 KKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 50 ~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
++.|+|+.++|++. + ...++.++++|+|.||.+.-.
T Consensus 69 ~dIDiVf~AT~a~~-H-~e~a~~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 69 DDIDIVFDATSAGA-H-VRHAAKLREAGIRAIDLTPAA 104 (302)
T ss_pred CCCCEEEECCCHHH-H-HHHHHHHHHcCCeEEECCccc
Confidence 56899999997754 3 478999999999999987653
No 398
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=67.33 E-value=7.6 Score=35.27 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=28.2
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++..+++|+.|++++.++++ +.|++||++|..
T Consensus 465 ~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~ 504 (676)
T TIGR02632 465 GRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIA 504 (676)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCC
Confidence 356788999999999999887 579999999964
No 399
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=67.28 E-value=7.9 Score=33.25 Aligned_cols=48 Identities=6% Similarity=0.003 Sum_probs=33.1
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc--h--------------hHHHHHHHHHcCCCeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW--Y--------------GEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~--~--------------~~~v~~Aci~~g~hYvDi 83 (138)
+++.+..|+.+. .+.++|+|||||++... . ...++++|.+.|+.+|=+
T Consensus 169 ~~~~~~~Di~~~-----~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~ 232 (436)
T PLN02166 169 RFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLT 232 (436)
T ss_pred ceEEEECccccc-----cccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 455666666443 45789999999985321 0 257899999998887644
No 400
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=67.28 E-value=7.8 Score=30.67 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=22.9
Q ss_pred cCcEEEecCCCccc--------------hhHHHHHHHHHcCCCeeeC
Q psy12849 51 KCRVILNCVGPYTW--------------YGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 51 ~~dvVIn~~GPf~~--------------~~~~v~~Aci~~g~hYvDi 83 (138)
++|+||||||-... ....++++|.+.|+..|=+
T Consensus 68 ~~d~Vih~A~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~ 114 (308)
T PRK11150 68 DIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYA 114 (308)
T ss_pred CccEEEECceecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 68999999972111 1236889999998776543
No 401
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=67.25 E-value=16 Score=29.13 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHH---H---HHHHcCCCeeeCCCChHH-HHHHHHHhHHHHHhCCCEEEe
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVV---K---ACIEAKTHHVDITGEPYF-MEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~---~---Aci~~g~hYvDisge~~~-~~~~~~~~~~~A~~~gv~iv~ 110 (138)
..++++++|+||-|+ |....-..++ + ..+..|+..||.+.-.+- .++ +.+..+++|+.++.
T Consensus 49 ~~~~~~~aDivi~~v-p~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~----l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 49 ARQVTEQADVIFTMV-PDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKR----FAKAVKEKGIDYLD 116 (291)
T ss_pred HHHHHhcCCEEEEec-CCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHH----HHHHHHHcCCCEEe
Confidence 456778899999998 5432222332 1 122467888887655443 233 33445556666655
No 402
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=67.25 E-value=7 Score=32.71 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=31.5
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
++++|+|+-|+++ ....+++..+.++|+-.||.|++.
T Consensus 64 ~~~vD~vFla~p~--~~s~~~v~~~~~~G~~VIDlS~~f 100 (336)
T PRK05671 64 FSQVQLAFFAAGA--AVSRSFAEKARAAGCSVIDLSGAL 100 (336)
T ss_pred hcCCCEEEEcCCH--HHHHHHHHHHHHCCCeEEECchhh
Confidence 3799999999954 345689999999999999999885
No 403
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=67.16 E-value=7.7 Score=32.15 Aligned_cols=48 Identities=13% Similarity=0.371 Sum_probs=29.0
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
....|.- .+..|...++++|+||.++|--......-++ ..+..|++|+
T Consensus 184 tVtv~hs-~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~ 234 (297)
T PRK14186 184 TVTIAHS-RTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRL 234 (297)
T ss_pred EEEEeCC-CCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccc
Confidence 3334433 3345889999999999999965544333222 2344555554
No 404
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=67.12 E-value=16 Score=29.94 Aligned_cols=67 Identities=18% Similarity=0.258 Sum_probs=46.8
Q ss_pred HHHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeC--CCChHHHHHHHHHhHHHHHhCCCEEE-eCC-CC
Q psy12849 43 SSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI--TGEPYFMEYMQYEYNTRAQESEVCVV-SAC-GI 114 (138)
Q Consensus 43 ~~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi--sge~~~~~~~~~~~~~~A~~~gv~iv-~~~-G~ 114 (138)
.++.++-.. .|++|-++ |-... ..+++.|.+.|+.-+=+ +|-... .+.++-+.|++.|+.++ |.| |+
T Consensus 53 ~sv~dlp~~~~~Dlavi~v-pa~~v-~~~l~e~~~~Gvk~avIis~Gf~e~---~~~~l~~~a~~~girilGPNc~Gi 125 (286)
T TIGR01019 53 DSVKEAVEETGANASVIFV-PAPFA-ADAIFEAIDAGIELIVCITEGIPVH---DMLKVKRYMEESGTRLIGPNCPGI 125 (286)
T ss_pred CCHHHHhhccCCCEEEEec-CHHHH-HHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHHHHcCCEEECCCCceE
Confidence 356666666 79999999 44433 57899999999988654 332222 23466788999999998 444 54
No 405
>PRK06720 hypothetical protein; Provisional
Probab=67.01 E-value=8.6 Score=28.64 Aligned_cols=60 Identities=5% Similarity=-0.005 Sum_probs=36.4
Q ss_pred CcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHH
Q psy12849 31 TNRTTVVNTINESSILIMAK-------KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEY 92 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~ 92 (138)
+..++.+|+.+.+++.++++ +.|++||++|-+.. ..+..+.-.+. -..+++.+-....+.
T Consensus 66 ~~~~~~~Dl~~~~~v~~~v~~~~~~~G~iDilVnnAG~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~ 132 (169)
T PRK06720 66 EALFVSYDMEKQGDWQRVISITLNAFSRIDMLFQNAGLYKI-DSIFSRQQEND-SNVLCINDVWIEIKQ 132 (169)
T ss_pred cEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCC-CCcccccchhH-hhceeccHHHHHHHH
Confidence 45678999999999888764 47999999984432 22222222112 236666555333333
No 406
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=66.89 E-value=7 Score=32.82 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=33.7
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+++++. .++.|+|+-|+|.|.. ...+...+++|+--||+|+-
T Consensus 80 ~~~~~~--w~gvDiVle~tG~~~s--~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 80 AIADTD--WSGCDVVIEASGVMKT--KALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred ChhhCC--ccCCCEEEEccchhhc--HHHHHHHHHCCCEEEEECCC
Confidence 555543 2499999999999854 46788999999999999864
No 407
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.70 E-value=13 Score=30.66 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=30.1
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....|+- .+..|.+.++++|+||.++|-........+ +-|+-.||+
T Consensus 183 tVtv~hs-~t~~l~~~~~~ADIvV~AvG~p~~i~~~~v----k~GavVIDv 228 (285)
T PRK14191 183 SVSVCHI-LTKDLSFYTQNADIVCVGVGKPDLIKASMV----KKGAVVVDI 228 (285)
T ss_pred EEEEEeC-CcHHHHHHHHhCCEEEEecCCCCcCCHHHc----CCCcEEEEe
Confidence 3344443 456799999999999999986555443333 455555554
No 408
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=66.70 E-value=7.9 Score=32.63 Aligned_cols=51 Identities=18% Similarity=0.147 Sum_probs=38.4
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
++....-.||+++.=---+.|+|+-|+|.|.. ...+...+++|+--||+|+
T Consensus 72 ~I~v~~~~dp~~~~W~~~gvDiV~e~tG~f~s--~~~a~~hl~aGak~V~iSa 122 (337)
T PRK07403 72 TIKCVSDRNPLNLPWKEWGIDLIIESTGVFVT--KEGASKHIQAGAKKVLITA 122 (337)
T ss_pred EEEEEEcCCcccCChhhcCCCEEEeccchhhh--HHHHHHHhhCCcEEEEeCC
Confidence 44455545667666322389999999999854 4678888999999999996
No 409
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=66.67 E-value=9 Score=32.37 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=37.9
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
++....-.|++++.=--.+.|+|+-|+|.|.. ..-++..+++|+--||+|+
T Consensus 71 ~I~v~~~~dp~~~~W~~~gvDiVle~tG~f~s--~~~a~~hl~aGak~V~iSa 121 (343)
T PRK07729 71 KIRLLNNRDPKELPWTDLGIDIVIEATGKFNS--KEKAILHVEAGAKKVILTA 121 (343)
T ss_pred EEEEEEcCChhhCcccccCCCEEEEccchhhh--HhHHHHHHHcCCeEEEeCC
Confidence 33444444776665333589999999999854 4678889999999999995
No 410
>PRK05086 malate dehydrogenase; Provisional
Probab=66.63 E-value=26 Score=28.75 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.1
Q ss_pred HHHHHHhcCcEEEecCCCccc
Q psy12849 44 SILIMAKKCRVILNCVGPYTW 64 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~ 64 (138)
++.+.++++|+||.|+|.-..
T Consensus 62 d~~~~l~~~DiVIitaG~~~~ 82 (312)
T PRK05086 62 DPTPALEGADVVLISAGVARK 82 (312)
T ss_pred CHHHHcCCCCEEEEcCCCCCC
Confidence 456778999999999997554
No 411
>KOG1014|consensus
Probab=66.62 E-value=41 Score=28.21 Aligned_cols=96 Identities=10% Similarity=0.058 Sum_probs=57.9
Q ss_pred CCcceEEeeCCCHHH----HHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC--hHHHHHHHHHhHHHH
Q psy12849 30 RTNRTTVVNTINESS----ILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE--PYFMEYMQYEYNTRA 101 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~----L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge--~~~~~~~~~~~~~~A 101 (138)
-++.++.+|..++.+ |.+.+.+ .-++||++|=++.+.+...+.=-..=..-+.+..- ...++.+. -+-..
T Consensus 99 vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~il--p~M~~ 176 (312)
T KOG1014|consen 99 VEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLIL--PGMVE 176 (312)
T ss_pred cEEEEEEEecCCCchhHHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhh--hhhhc
Confidence 467888999976654 7777776 46899999988766555544433222333444333 23333322 12345
Q ss_pred HhCCCEEEeCCCCccchHhHHHHHHH
Q psy12849 102 QESEVCVVSACGIETLPIDMGVLMLQ 127 (138)
Q Consensus 102 ~~~gv~iv~~~G~d~~p~dl~~~~~~ 127 (138)
+.+|+.+-.|++-...|.-+...|.+
T Consensus 177 r~~G~IvnigS~ag~~p~p~~s~ysa 202 (312)
T KOG1014|consen 177 RKKGIIVNIGSFAGLIPTPLLSVYSA 202 (312)
T ss_pred CCCceEEEeccccccccChhHHHHHH
Confidence 78899888886655566555554433
No 412
>PRK06484 short chain dehydrogenase; Validated
Probab=66.24 E-value=7.7 Score=33.22 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=26.3
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GP 61 (138)
+..++++|+.|++++.++++. .|++||++|.
T Consensus 52 ~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~li~nag~ 89 (520)
T PRK06484 52 DHHALAMDVSDEAQIREGFEQLHREFGRIDVLVNNAGV 89 (520)
T ss_pred ceeEEEeccCCHHHHHHHHHHHHHHhCCCCEEEECCCc
Confidence 466799999999998888764 7999999984
No 413
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.07 E-value=8.2 Score=31.75 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=30.5
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....|+ +.+..|.+.++++|+||.++|--.......+ +-|+-.||+
T Consensus 184 tVt~ch-s~t~~l~~~~~~ADIvI~AvG~p~~i~~~~i----k~gavVIDv 229 (284)
T PRK14190 184 TVTYCH-SKTKNLAELTKQADILIVAVGKPKLITADMV----KEGAVVIDV 229 (284)
T ss_pred EEEEEe-CCchhHHHHHHhCCEEEEecCCCCcCCHHHc----CCCCEEEEe
Confidence 333454 3456799999999999999986655443333 555555555
No 414
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=65.99 E-value=14 Score=30.60 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=41.7
Q ss_pred HHHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeC--CCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 43 SSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI--TGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 43 ~~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi--sge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
.++.++-.. .|++|-++ |.... ..+++.|.+.|++-+=+ +|-.+. .+++.+.+.|++.|+.++
T Consensus 59 ~sv~dlp~~~~~DlAvI~v-Pa~~v-~~al~e~~~~Gvk~~vIisaGf~e~--g~~~~~~~~ar~~girvi 125 (300)
T PLN00125 59 NTVAEAKAETKANASVIYV-PPPFA-AAAILEAMEAELDLVVCITEGIPQH--DMVRVKAALNRQSKTRLI 125 (300)
T ss_pred CCHHHHhhccCCCEEEEec-CHHHH-HHHHHHHHHcCCCEEEEECCCCCcc--cHHHHHHHHHhhcCCEEE
Confidence 355666555 79999999 54444 57899999999997655 222211 133344456888888776
No 415
>PLN02522 ATP citrate (pro-S)-lyase
Probab=65.92 E-value=18 Score=32.88 Aligned_cols=64 Identities=17% Similarity=0.127 Sum_probs=45.0
Q ss_pred HHHHHHh---cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 44 SILIMAK---KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 44 ~L~~~~~---~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
++.+.++ ++++.|+.+ |.....+.++|+|.+.|+..+=+--+..-... +.+..+.|++.|+.++
T Consensus 68 tv~eA~~~~~~~~~~vifv-p~~~a~da~lEa~~a~GIk~~VIiteGfpe~d-~~~l~~~Ar~~g~rlI 134 (608)
T PLN02522 68 SIEAACKAHPTADVFINFA-SFRSAAASSMEALKQPTIRVVAIIAEGVPESD-TKQLIAYARANNKVVI 134 (608)
T ss_pred hHHHHHHhCCCCcEEEEeC-ChHHhHHHHHHHHhhCCCCEEEEECCCCChhh-HHHHHHHHHHcCCEEE
Confidence 5666665 469999999 54555679999999989887665222111122 3467788999999988
No 416
>PRK08324 short chain dehydrogenase; Validated
Probab=65.72 E-value=8.9 Score=34.66 Aligned_cols=33 Identities=6% Similarity=0.124 Sum_probs=28.2
Q ss_pred CCcceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
.++.++.+|+.|++++.++++ +.|+|||++|..
T Consensus 470 ~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 470 DRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 367889999999999988886 579999999953
No 417
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.62 E-value=32 Score=25.62 Aligned_cols=77 Identities=14% Similarity=0.033 Sum_probs=52.2
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe-CCCCccchHh
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS-ACGIETLPID 120 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~-~~G~d~~p~d 120 (138)
.-+.++++.+..=+-..|-+ ...+.+++++++..+|-|=+|+-......+....-+..+++|+--+. -+|=.-.|.|
T Consensus 30 kvia~~l~d~GfeVi~~g~~-~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGvip~~d 107 (143)
T COG2185 30 KVIARALADAGFEVINLGLF-QTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGVIPPGD 107 (143)
T ss_pred HHHHHHHHhCCceEEecCCc-CCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCccCchh
Confidence 34777777643333333334 45589999999999999999988777666666778888888876665 3442234444
No 418
>KOG3923|consensus
Probab=65.60 E-value=6.3 Score=33.18 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=24.4
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCRVILNCVGPYT 63 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~ 63 (138)
..+++.+=-+++-+++.+ .+.|||+||+|-..
T Consensus 164 ~Gvef~~r~v~~l~E~~~--~~~DVivNCtGL~a 195 (342)
T KOG3923|consen 164 NGVEFVQRRVESLEEVAR--PEYDVIVNCTGLGA 195 (342)
T ss_pred cCcEEEEeeeccHHHhcc--CCCcEEEECCcccc
Confidence 456777777777666555 89999999999654
No 419
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=65.57 E-value=8.7 Score=31.84 Aligned_cols=40 Identities=5% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
+.+..|...++++|+||.++|--...... -++.|+-.||+
T Consensus 193 s~T~~l~~~~~~ADIvIsAvGkp~~i~~~----~ik~gaiVIDv 232 (297)
T PRK14167 193 SRTDDLAAKTRRADIVVAAAGVPELIDGS----MLSEGATVIDV 232 (297)
T ss_pred CCCCCHHHHHhhCCEEEEccCCcCccCHH----HcCCCCEEEEc
Confidence 34456899999999999999965544333 33444444444
No 420
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.55 E-value=6.8 Score=29.48 Aligned_cols=31 Identities=6% Similarity=0.115 Sum_probs=24.6
Q ss_pred CcceEEeeCCCH-HHHHHHHhcCcEEEecCCC
Q psy12849 31 TNRTTVVNTINE-SSILIMAKKCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~-~~L~~~~~~~dvVIn~~GP 61 (138)
++.++.+|+.++ +++.+...+.|++||++|.
T Consensus 46 ~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~ 77 (235)
T PRK06550 46 NFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI 77 (235)
T ss_pred cEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence 567889999887 5555556678999999984
No 421
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=65.34 E-value=8 Score=25.94 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=29.1
Q ss_pred HHHHHhc--CcEEEecCCCccc----hhHHHHHHHHHcCCCee
Q psy12849 45 ILIMAKK--CRVILNCVGPYTW----YGEAVVKACIEAKTHHV 81 (138)
Q Consensus 45 L~~~~~~--~dvVIn~~GPf~~----~~~~v~~Aci~~g~hYv 81 (138)
+.++++. .|+|||...|+.. .|..+-++|++.+++++
T Consensus 52 i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 52 IMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 6777775 6999999999875 56788999999999886
No 422
>KOG1611|consensus
Probab=65.06 E-value=9.6 Score=30.84 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=31.1
Q ss_pred CCcceEEeeCCCHHHHHHHHh---------cCcEEEecCCCccch
Q psy12849 30 RTNRTTVVNTINESSILIMAK---------KCRVILNCVGPYTWY 65 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~---------~~dvVIn~~GPf~~~ 65 (138)
+++.++++|+++.+++.++.+ +.+++||.+|=+..+
T Consensus 54 ~rvHii~Ldvt~deS~~~~~~~V~~iVg~~GlnlLinNaGi~~~y 98 (249)
T KOG1611|consen 54 SRVHIIQLDVTCDESIDNFVQEVEKIVGSDGLNLLINNAGIALSY 98 (249)
T ss_pred CceEEEEEecccHHHHHHHHHHHHhhcccCCceEEEeccceeeec
Confidence 789999999999999998876 469999999966544
No 423
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=64.92 E-value=8.3 Score=31.92 Aligned_cols=37 Identities=11% Similarity=0.018 Sum_probs=30.7
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
++++|+|+.|+|-+ ....++...+++|+.-||+|++.
T Consensus 61 ~~~vDvVf~A~g~g--~s~~~~~~~~~~G~~VIDlS~~~ 97 (334)
T PRK14874 61 FSGVDIALFSAGGS--VSKKYAPKAAAAGAVVIDNSSAF 97 (334)
T ss_pred HcCCCEEEECCChH--HHHHHHHHHHhCCCEEEECCchh
Confidence 36899999999643 44688888899999999999874
No 424
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=64.73 E-value=13 Score=29.78 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=0.0
Q ss_pred EEecCCCccchhHHH----------HHHHHHcCCCeeeCCCChH--------------HHHHHHHHhHHH----------
Q psy12849 55 ILNCVGPYTWYGEAV----------VKACIEAKTHHVDITGEPY--------------FMEYMQYEYNTR---------- 100 (138)
Q Consensus 55 VIn~~GPf~~~~~~v----------~~Aci~~g~hYvDisge~~--------------~~~~~~~~~~~~---------- 100 (138)
|||.. |=+++.... ++..++.|+|+||++|+.. .+..+.....+.
T Consensus 6 IlN~t-pdSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~ 84 (257)
T cd00739 6 ILNVT-PDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTF 84 (257)
T ss_pred EEcCC-CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC
Q ss_pred -------HHhCCCEEEeCC
Q psy12849 101 -------AQESEVCVVSAC 112 (138)
Q Consensus 101 -------A~~~gv~iv~~~ 112 (138)
|-+.|..+|++.
T Consensus 85 ~~~v~e~al~~G~~iINdi 103 (257)
T cd00739 85 RAEVARAALEAGADIINDV 103 (257)
T ss_pred CHHHHHHHHHhCCCEEEeC
No 425
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.62 E-value=8.5 Score=28.92 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=27.4
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCCCcc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVGPYT 63 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~GPf~ 63 (138)
++.++.+|+.|++++.+++++ .|.+|+++|.+.
T Consensus 54 ~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ii~~ag~~~ 93 (238)
T PRK05786 54 NIHYVVGDVSSTESARNVIEKAAKVLNAIDGLVVTVGGYV 93 (238)
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEEcCCCcC
Confidence 578899999999999887765 489999998653
No 426
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=64.56 E-value=15 Score=27.72 Aligned_cols=52 Identities=10% Similarity=0.167 Sum_probs=34.9
Q ss_pred CcceEEeeCCCHHHHHHHHh-----cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-----KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITG 85 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-----~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisg 85 (138)
.++.+.+|-.+++.+.++++ +..+.|.++|=.. -+++.+.+ +.|++|+.++.
T Consensus 100 g~d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~--~~ni~~ya-~~gvD~isvg~ 156 (169)
T PF01729_consen 100 GADIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGIT--LENIAEYA-KTGVDVISVGS 156 (169)
T ss_dssp T-SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSS--TTTHHHHH-HTT-SEEEECH
T ss_pred CCCEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCC--HHHHHHHH-hcCCCEEEcCh
Confidence 57888888888888888887 3468888887433 23544444 88888888743
No 427
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=64.55 E-value=7.8 Score=32.54 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=33.3
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
|++++.=---+.|+|+-|+|.|.. ..-+...+++|+--||+|+-
T Consensus 79 dp~~~~w~~~gvDiVle~tG~f~s--~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 79 DPANLKWDEVGVDVVAEATGLFLT--DETARKHITAGAKKVVMTGP 122 (331)
T ss_pred ChhhCcccccCCCEEEEecchhhc--HHHHHHHHHCCCEEEEeCCC
Confidence 555544211289999999999854 46788899999999999853
No 428
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=64.28 E-value=11 Score=31.52 Aligned_cols=37 Identities=11% Similarity=0.004 Sum_probs=30.5
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
++++|+|+.|+| - ....+.+..+.+.|+..||.|++.
T Consensus 67 ~~~~D~vf~a~p-~-~~s~~~~~~~~~~g~~VIDlS~~f 103 (344)
T PLN02383 67 FDGVDIALFSAG-G-SISKKFGPIAVDKGAVVVDNSSAF 103 (344)
T ss_pred HcCCCEEEECCC-c-HHHHHHHHHHHhCCCEEEECCchh
Confidence 378999999995 3 355688888889999999999875
No 429
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=64.01 E-value=75 Score=25.53 Aligned_cols=80 Identities=18% Similarity=0.049 Sum_probs=51.7
Q ss_pred EEeeCCCHHHHHHHHh---cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC----CChHHH---HHHHHHhHHHHHhC
Q psy12849 35 TVVNTINESSILIMAK---KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT----GEPYFM---EYMQYEYNTRAQES 104 (138)
Q Consensus 35 ~~~D~~d~~~L~~~~~---~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis----ge~~~~---~~~~~~~~~~A~~~ 104 (138)
+.+|..+++.+.+.++ +.+ +||-+-.....-+.+++.+.+.|+.+|=+. |.+.-. .++..+.-+.+.+.
T Consensus 72 lsIDT~~~~v~eaaL~~~~G~~-iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~ 150 (261)
T PRK07535 72 LCIDSPNPAAIEAGLKVAKGPP-LINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEY 150 (261)
T ss_pred EEEeCCCHHHHHHHHHhCCCCC-EEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 7999999999999998 555 566653322112478888999999998432 333111 12223445678889
Q ss_pred CC---EEEeCCCCc
Q psy12849 105 EV---CVVSACGIE 115 (138)
Q Consensus 105 gv---~iv~~~G~d 115 (138)
|+ .++.-.|+.
T Consensus 151 GI~~~~IilDPgi~ 164 (261)
T PRK07535 151 GIPPEDIYIDPLVL 164 (261)
T ss_pred CCCHhHEEEeCCCC
Confidence 99 566555554
No 430
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=63.67 E-value=91 Score=26.98 Aligned_cols=95 Identities=18% Similarity=0.179 Sum_probs=55.9
Q ss_pred hhhhcCCCCcceEEeeCCCH--HHHHHHHh-------cCcEEE-ecCCCccchhHHHHHHHHHcCCCeeeCC-CC-----
Q psy12849 23 KASWFGVRTNRTTVVNTINE--SSILIMAK-------KCRVIL-NCVGPYTWYGEAVVKACIEAKTHHVDIT-GE----- 86 (138)
Q Consensus 23 ~a~~~~~~~~~~~~~D~~d~--~~L~~~~~-------~~dvVI-n~~GPf~~~~~~v~~Aci~~g~hYvDis-ge----- 86 (138)
++.++-...++.+.+|..+- ..+.++++ +..++. |++ ...-++.++++|++.|+++ |-
T Consensus 228 r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~------t~~~a~~l~~aGad~i~vg~g~G~~~~ 301 (450)
T TIGR01302 228 RAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA------TAEQAKALIDAGADGLRVGIGPGSICT 301 (450)
T ss_pred HHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHhCCCEEEECCCCCcCCc
Confidence 34433334678899998421 22222222 245555 333 1356899999999999864 11
Q ss_pred h--------HHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHHHHH
Q psy12849 87 P--------YFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGVLM 125 (138)
Q Consensus 87 ~--------~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~~~~ 125 (138)
. |-... ..+..+.+++.++.++..-|+ --|+|+.-.+
T Consensus 302 t~~~~~~g~p~~~~-i~~~~~~~~~~~vpviadGGi-~~~~di~kAl 346 (450)
T TIGR01302 302 TRIVAGVGVPQITA-VYDVAEYAAQSGIPVIADGGI-RYSGDIVKAL 346 (450)
T ss_pred cceecCCCccHHHH-HHHHHHHHhhcCCeEEEeCCC-CCHHHHHHHH
Confidence 0 11122 234556677789999997776 5677765544
No 431
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=63.48 E-value=11 Score=26.34 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=26.4
Q ss_pred CCCeeeCCCChHHHH------HHHHHhHHHHHhCCCEEEeCCCC
Q psy12849 77 KTHHVDITGEPYFME------YMQYEYNTRAQESEVCVVSACGI 114 (138)
Q Consensus 77 g~hYvDisge~~~~~------~~~~~~~~~A~~~gv~iv~~~G~ 114 (138)
++-.||-|+-+++++ .+...-=+.|+++|..++|.|.|
T Consensus 38 ~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~kiiP~Csf 81 (99)
T COG2388 38 NLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKIIPLCSF 81 (99)
T ss_pred CEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeEcccchH
Confidence 445666666666654 33334446799999999999995
No 432
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=63.22 E-value=18 Score=29.25 Aligned_cols=60 Identities=15% Similarity=0.081 Sum_probs=29.3
Q ss_pred HHHhcCcEEEecCCCccchhHHHH------HHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 47 IMAKKCRVILNCVGPYTWYGEAVV------KACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 47 ~~~~~~dvVIn~~GPf~~~~~~v~------~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
++.+++|+||-|+ |-...-+.++ -..+..|.-+||+|.-.|-.- .+..+.++++|+.++-
T Consensus 51 ~~~~~advVi~~v-~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~---~~~~~~~~~~G~~~vd 116 (292)
T PRK15059 51 QVTEASDIIFIMV-PDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIET---KRFARQVNELGGDYLD 116 (292)
T ss_pred HHHhcCCEEEEeC-CChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHH---HHHHHHHHHcCCCEEE
Confidence 3456777777777 4321111221 111234667777765444321 1333555556665544
No 433
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=63.16 E-value=46 Score=26.17 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=58.8
Q ss_pred HHHHHHHhhhhcCCCCcceEEe----------eCCCHHHHHHHHhcC-cEEEecCCCccc-h--------------hHHH
Q psy12849 16 KIFLFLQKASWFGVRTNRTTVV----------NTINESSILIMAKKC-RVILNCVGPYTW-Y--------------GEAV 69 (138)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~~----------D~~d~~~L~~~~~~~-dvVIn~~GPf~~-~--------------~~~v 69 (138)
.+-.+++.+++.|.+.+++..- +-.+.+++.+++++. .+.+.+.+||.. . -...
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 90 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDE 90 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHH
Confidence 3455677888887644433211 113456788888888 777777777641 1 1467
Q ss_pred HHHHHHcCCCeeeC-CCChH------HHHHHH---HHhHHHHHhCCCEEEeCC
Q psy12849 70 VKACIEAKTHHVDI-TGEPY------FMEYMQ---YEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 70 ~~Aci~~g~hYvDi-sge~~------~~~~~~---~~~~~~A~~~gv~iv~~~ 112 (138)
++.|-+.|++|+=+ .|..+ ..+.+. .+.-+.|++.|+++...-
T Consensus 91 i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 91 IERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 88889999999755 23211 122222 244455667899988764
No 434
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=63.08 E-value=53 Score=24.38 Aligned_cols=101 Identities=14% Similarity=0.016 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCcceEEeeCC-------CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCee
Q psy12849 9 KLTADILKIFLFLQKASWFGVRTNRTTVVNTI-------NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHV 81 (138)
Q Consensus 9 ~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~-------d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYv 81 (138)
.+.-|..++...++.+.+.|.+-+++...|.. ..+.+.++.+.++..+.+. =+.......++.|.+.|+++|
T Consensus 6 ~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~-l~~~d~~~~~~~~~~~g~dgv 84 (211)
T cd00429 6 ILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVH-LMVENPERYIEAFAKAGADII 84 (211)
T ss_pred eecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEE-eeeCCHHHHHHHHHHcCCCEE
Confidence 34556667766677666655533333222221 1244555444332222110 011111345888889999997
Q ss_pred eCCCChHHHHHHHHHhHHHHHhCCCEEEeCCC
Q psy12849 82 DITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113 (138)
Q Consensus 82 Disge~~~~~~~~~~~~~~A~~~gv~iv~~~G 113 (138)
-+-+...- .. .++-+..++.|+.+...++
T Consensus 85 ~vh~~~~~--~~-~~~~~~~~~~~~~~g~~~~ 113 (211)
T cd00429 85 TFHAEATD--HL-HRTIQLIKELGMKAGVALN 113 (211)
T ss_pred EECccchh--hH-HHHHHHHHHCCCeEEEEec
Confidence 66555431 11 1222445556666666554
No 435
>PLN02206 UDP-glucuronate decarboxylase
Probab=63.06 E-value=12 Score=32.20 Aligned_cols=48 Identities=4% Similarity=-0.074 Sum_probs=33.7
Q ss_pred CcceEEeeCCCHHHHHHHHhcCcEEEecCCCccc----------------hhHHHHHHHHHcCCCeeeC
Q psy12849 31 TNRTTVVNTINESSILIMAKKCRVILNCVGPYTW----------------YGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~----------------~~~~v~~Aci~~g~hYvDi 83 (138)
+++++..|+.++ .+.++|+||||+++... -...++++|.+.|+.+|=+
T Consensus 168 ~~~~i~~D~~~~-----~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~ 231 (442)
T PLN02206 168 NFELIRHDVVEP-----ILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLT 231 (442)
T ss_pred ceEEEECCccCh-----hhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 456666777554 35689999999985321 0246899999999887743
No 436
>PRK12747 short chain dehydrogenase; Provisional
Probab=62.72 E-value=12 Score=28.55 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=24.2
Q ss_pred CcceEEeeCCCHHHHHHHHh-------------cCcEEEecCCC
Q psy12849 31 TNRTTVVNTINESSILIMAK-------------KCRVILNCVGP 61 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~-------------~~dvVIn~~GP 61 (138)
+.....+|+.+.+++..+++ +.|++||++|.
T Consensus 55 ~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~ 98 (252)
T PRK12747 55 SAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGI 98 (252)
T ss_pred ceEEEecccCCHHHHHHHHHHHHHHhhhhcCCCCCCEEEECCCc
Confidence 45678899999887765553 57999999984
No 437
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.52 E-value=10 Score=31.12 Aligned_cols=40 Identities=10% Similarity=0.269 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 42 ESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 42 ~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
+..|...++++|+||.++|--.......++ .++..|++|+
T Consensus 191 T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~ 233 (282)
T PRK14166 191 TKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRL 233 (282)
T ss_pred CCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeccccc
Confidence 345899999999999999966655433332 2344455554
No 438
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=62.50 E-value=23 Score=29.08 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=47.3
Q ss_pred CHHHHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeC--CCChHHHHHHHHHhHHHHHhCCCEEE-eC-CCC
Q psy12849 41 NESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI--TGEPYFMEYMQYEYNTRAQESEVCVV-SA-CGI 114 (138)
Q Consensus 41 d~~~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi--sge~~~~~~~~~~~~~~A~~~gv~iv-~~-~G~ 114 (138)
-..++..+-.. .|++|-++.| ... ..+++.|.+.|+..+=+ +|- + .++. .++-+.|++.|+.++ |+ .|+
T Consensus 53 ~y~sv~dlp~~~~~DlAvi~vp~-~~v-~~~l~e~~~~gvk~avI~s~Gf-~-~~~~-~~l~~~a~~~girvlGPNc~Gi 127 (291)
T PRK05678 53 VFNTVAEAVEATGANASVIYVPP-PFA-ADAILEAIDAGIDLIVCITEGI-P-VLDM-LEVKAYLERKKTRLIGPNCPGI 127 (291)
T ss_pred ccCCHHHHhhccCCCEEEEEcCH-HHH-HHHHHHHHHCCCCEEEEECCCC-C-HHHH-HHHHHHHHHcCCEEECCCCCcc
Confidence 33466777676 8999999944 333 57899999999998554 332 2 2211 266688999999998 44 454
No 439
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=62.49 E-value=15 Score=23.93 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHHH--HHcCCCeeeCC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKAC--IEAKTHHVDIT 84 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~Ac--i~~g~hYvDis 84 (138)
..++++.+|+|+-|+-|.. . ..+++.. ...+..+||++
T Consensus 55 ~~~~~~~advvilav~p~~-~-~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 55 NEEAAQEADVVILAVKPQQ-L-PEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp HHHHHHHTSEEEE-S-GGG-H-HHHHHHHHHHHTTSEEEEES
T ss_pred hHHhhccCCEEEEEECHHH-H-HHHHHHHhhccCCCEEEEeC
Confidence 3456668999999995544 4 2455554 66888888874
No 440
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=62.38 E-value=73 Score=24.81 Aligned_cols=97 Identities=11% Similarity=-0.062 Sum_probs=60.8
Q ss_pred HHHHHHHhhhhcCCCCcceEE---------eeCCCHHHHHHHHhcCcEEEecCCCc------c-c------------hhH
Q psy12849 16 KIFLFLQKASWFGVRTNRTTV---------VNTINESSILIMAKKCRVILNCVGPY------T-W------------YGE 67 (138)
Q Consensus 16 ~~~~~~~~a~~~~~~~~~~~~---------~D~~d~~~L~~~~~~~dvVIn~~GPf------~-~------------~~~ 67 (138)
.+...++.+++.|.+.++... .+..+.+.+.+.++.+.+-|...+|. . . .-.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 93 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK 93 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence 456677888888876665421 22235678899998888777655432 1 0 112
Q ss_pred HHHHHHHHcCCCeeeCCCC-----------hHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849 68 AVVKACIEAKTHHVDITGE-----------PYFMEYMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 68 ~v~~Aci~~g~hYvDisge-----------~~~~~~~~~~~~~~A~~~gv~iv~~~ 112 (138)
..++.|.+.|+.++=+..- ..++.+....+-+.|++.|+++...-
T Consensus 94 ~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 94 LAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 4567889999999755221 12222333466778899999988664
No 441
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=62.33 E-value=17 Score=26.62 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=30.9
Q ss_pred HHHHHHHhc--CcEEEecCCCcc-----chhHHHHHHHHHcCCCeeeC
Q psy12849 43 SSILIMAKK--CRVILNCVGPYT-----WYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 43 ~~L~~~~~~--~dvVIn~~GPf~-----~~~~~v~~Aci~~g~hYvDi 83 (138)
..+..+++. .+.|||+..|.. ..+..+.++|++.+++|+..
T Consensus 65 ~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~ 112 (142)
T PRK05234 65 QQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATN 112 (142)
T ss_pred hhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcC
Confidence 446666664 799999873332 23668999999999999876
No 442
>PRK08303 short chain dehydrogenase; Provisional
Probab=62.25 E-value=8.5 Score=31.11 Aligned_cols=30 Identities=10% Similarity=0.288 Sum_probs=25.5
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecC-C
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCV-G 60 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~-G 60 (138)
++.++++|+.|++++.++++. .|++||++ |
T Consensus 68 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnnA~g 105 (305)
T PRK08303 68 RGIAVQVDHLVPEQVRALVERIDREQGRLDILVNDIWG 105 (305)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 456889999999999888764 59999999 6
No 443
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=62.20 E-value=41 Score=27.08 Aligned_cols=53 Identities=21% Similarity=0.021 Sum_probs=27.0
Q ss_pred CcEEEecCCCccchhHHHHHHH---HHcCCCeeeCCCC-hHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 52 CRVILNCVGPYTWYGEAVVKAC---IEAKTHHVDITGE-PYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 52 ~dvVIn~~GPf~~~~~~v~~Ac---i~~g~hYvDisge-~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
+|+|+-|+ |-...-+.+++.. +..|.-+||+|.. +...+++ .++++++|+.++
T Consensus 60 advVi~~v-p~~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~----~~~~~~~g~~~v 116 (299)
T PRK12490 60 PRTIWVMV-PAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRR----AEELAERGIHYV 116 (299)
T ss_pred CCEEEEEe-cCchHHHHHHHHHhccCCCCCEEEECCCCCchhHHHH----HHHHHHcCCeEE
Confidence 57888887 4332223443332 3456777887544 3344433 234445565543
No 444
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=62.16 E-value=9.1 Score=32.03 Aligned_cols=34 Identities=18% Similarity=0.411 Sum_probs=29.5
Q ss_pred cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 51 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 51 ~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+.|+|+-|+|.|.. ..-+.+.+++|+--||+|+-
T Consensus 90 gvDiVle~tG~~~s--~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 90 GVDIVIECTGKFRD--KEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred CCCEEEEccchhhc--HHHHHHHhhCCCEEEEeCCC
Confidence 89999999999854 46788999999999999854
No 445
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=62.07 E-value=35 Score=26.75 Aligned_cols=74 Identities=15% Similarity=-0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHHh---cCcEEEecCCCccchhHHHHHHHH
Q psy12849 8 QKLTADILKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMAK---KCRVILNCVGPYTWYGEAVVKACI 74 (138)
Q Consensus 8 ~~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~~---~~dvVIn~~GPf~~~~~~v~~Aci 74 (138)
+.+.+|..++-..++..++. .++++.+|+.| +..+..+-+ ..-+-++.- |. .....++.+.
T Consensus 12 Si~~~d~~~l~~~~~~l~~~---~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm-~~--~p~~~i~~~~ 85 (228)
T PTZ00170 12 SILAADFSKLADEAQDVLSG---GADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLM-VS--NPEKWVDDFA 85 (228)
T ss_pred hHhhcCHHHHHHHHHHHHHc---CCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEEC-CC--CHHHHHHHHH
Confidence 45777877775555555553 35777788776 122333333 233445555 32 3356789999
Q ss_pred HcCCCeeeCCCCh
Q psy12849 75 EAKTHHVDITGEP 87 (138)
Q Consensus 75 ~~g~hYvDisge~ 87 (138)
++|++|+-+=+|.
T Consensus 86 ~~Gad~itvH~ea 98 (228)
T PTZ00170 86 KAGASQFTFHIEA 98 (228)
T ss_pred HcCCCEEEEeccC
Confidence 9999999986663
No 446
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=61.98 E-value=21 Score=22.87 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=38.6
Q ss_pred cEEEecCCCccchh--HHHHHHHHHcCCCeeeC---------------CCChHHHHHHHHHhHHHHHhCCCEEE
Q psy12849 53 RVILNCVGPYTWYG--EAVVKACIEAKTHHVDI---------------TGEPYFMEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 53 dvVIn~~GPf~~~~--~~v~~Aci~~g~hYvDi---------------sge~~~~~~~~~~~~~~A~~~gv~iv 109 (138)
.+||+..||=. .| ..+.+...+.|++-+|+ ++.+.-...+...+.+.+++-|+.+.
T Consensus 2 ~~vItv~G~Dr-pGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l~~~~~l~v~ 74 (76)
T PF13740_consen 2 QLVITVVGPDR-PGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEELAEELGLDVS 74 (76)
T ss_dssp EEEEEEEEE---TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHHHHTT-EEE
T ss_pred EEEEEEEecCC-CcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHHHHHCCcEEE
Confidence 36888888843 33 58889999999999883 34455566677788888888887653
No 447
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=61.88 E-value=36 Score=30.09 Aligned_cols=73 Identities=14% Similarity=0.027 Sum_probs=45.2
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHH---HHHHHcCCCeeeCCCCh-HHHHHHHHHhHHHHHhCCCEEEeCCCCc
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVV---KACIEAKTHHVDITGEP-YFMEYMQYEYNTRAQESEVCVVSACGIE 115 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~---~Aci~~g~hYvDisge~-~~~~~~~~~~~~~A~~~gv~iv~~~G~d 115 (138)
.+++++.+-++++|+||-|+ |-...-+.|+ -..++.|.-+||.+-.. .-.++ ..++++++|+.+ .++|..
T Consensus 61 ~s~~e~v~~l~~~dvIi~~v-~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~----~~~~l~~~Gi~f-ldapVS 134 (493)
T PLN02350 61 KDPEDFVLSIQKPRSVIILV-KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTER----RIKEAAEKGLLY-LGMGVS 134 (493)
T ss_pred CCHHHHHhcCCCCCEEEEEC-CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHH----HHHHHHHcCCeE-EeCCCc
Confidence 35555555555699999999 6554444553 23456799999996653 34433 346677778874 455654
Q ss_pred cch
Q psy12849 116 TLP 118 (138)
Q Consensus 116 ~~p 118 (138)
.+|
T Consensus 135 GG~ 137 (493)
T PLN02350 135 GGE 137 (493)
T ss_pred CCH
Confidence 443
No 448
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=61.84 E-value=9.3 Score=32.13 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=34.6
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
|++.+.=--.++|+|+-|+|.|.. ...+...+++|+--||+|+-
T Consensus 81 ~p~~~~w~~~gvDiVle~tG~~~s--~~~a~~~l~aGAk~V~iSap 124 (336)
T PRK13535 81 DIASLPWRELGVDVVLDCTGVYGS--REDGEAHIAAGAKKVLFSHP 124 (336)
T ss_pred CcccCcccccCCCEEEEccchhhh--HHHHHHHHHcCCEEEEecCC
Confidence 555554222589999999998854 57789999999999999865
No 449
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=61.25 E-value=22 Score=24.20 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=31.4
Q ss_pred CHHHHHHHHhc--CcEEEecCCCcc--chhHHHHHHHHHcCCCeee
Q psy12849 41 NESSILIMAKK--CRVILNCVGPYT--WYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 41 d~~~L~~~~~~--~dvVIn~~GPf~--~~~~~v~~Aci~~g~hYvD 82 (138)
....+.+++++ .|+|||...+.. ..|..+-+.|++.|++|+-
T Consensus 55 ~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 34567777774 799999864332 2367899999999999994
No 450
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=61.15 E-value=19 Score=26.96 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.0
Q ss_pred hhhhcCCCCcceEEeeCCCHHHHHHHHhcC-----cEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHH
Q psy12849 23 KASWFGVRTNRTTVVNTINESSILIMAKKC-----RVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFME 91 (138)
Q Consensus 23 ~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~-----dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~ 91 (138)
+|.+.+. .++++|.+ .+.+|...+.++ -+|||.+ -|+.++-.+..|....+.++|-+==...+.|
T Consensus 38 ~a~~~g~-~v~~~QSN--~EGelId~I~~a~~~~dgiiINpg-a~THtSiAl~DAl~~~~~P~VEVHiSNi~aR 107 (146)
T PRK05395 38 EAAELGV-ELEFFQSN--HEGELIDRIHEARDGADGIIINPG-AYTHTSVALRDALAAVSIPVIEVHLSNIHAR 107 (146)
T ss_pred HHHHcCC-EEEEEeeC--cHHHHHHHHHhcccCCcEEEECch-HHHHHHHHHHHHHHcCCCCEEEEecCCcccc
Confidence 4555555 56777765 666777777664 2888887 4777777788888888999998755544444
No 451
>PRK06924 short chain dehydrogenase; Provisional
Probab=61.15 E-value=8.7 Score=29.17 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=25.5
Q ss_pred CCcceEEeeCCCHHHHHHHHhcCc-----------EEEecCCC
Q psy12849 30 RTNRTTVVNTINESSILIMAKKCR-----------VILNCVGP 61 (138)
Q Consensus 30 ~~~~~~~~D~~d~~~L~~~~~~~d-----------vVIn~~GP 61 (138)
.++.++++|+.|++++.++++++. ++|+++|-
T Consensus 48 ~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ag~ 90 (251)
T PRK06924 48 SNLTFHSLDLQDVHELETNFNEILSSIQEDNVSSIHLINNAGM 90 (251)
T ss_pred CceEEEEecCCCHHHHHHHHHHHHHhcCcccCCceEEEEccee
Confidence 467889999999999998887531 68888763
No 452
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.81 E-value=15 Score=30.97 Aligned_cols=31 Identities=6% Similarity=0.108 Sum_probs=26.0
Q ss_pred cceEEeeCCCHHHHHHHHh-------cCcEEEecCCCc
Q psy12849 32 NRTTVVNTINESSILIMAK-------KCRVILNCVGPY 62 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~-------~~dvVIn~~GPf 62 (138)
..++.+|+.|++++.++++ +.|+|||++|..
T Consensus 258 ~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~vi~~AG~~ 295 (450)
T PRK08261 258 GTALALDITAPDAPARIAEHLAERHGGLDIVVHNAGIT 295 (450)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHhCCCCCEEEECCCcC
Confidence 3578999999999888877 469999999954
No 453
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.80 E-value=39 Score=26.74 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 90 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~ 90 (138)
..+.+.+.+..++-=..+.-.....++++++++.|...+-++-..+-.
T Consensus 6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a 53 (222)
T PRK07114 6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFA 53 (222)
T ss_pred HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcH
Confidence 345566666666555555555667899999999999999887755443
No 454
>PRK08005 epimerase; Validated
Probab=60.44 E-value=40 Score=26.41 Aligned_cols=71 Identities=14% Similarity=0.018 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHHhcCc----EEEecCCCccchhHHHHHHH
Q psy12849 8 QKLTADILKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMAKKCR----VILNCVGPYTWYGEAVVKAC 73 (138)
Q Consensus 8 ~~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~~~~d----vVIn~~GPf~~~~~~v~~Ac 73 (138)
|.+.+|..++-..++..++. .++++.+|+.| ++.++.+-+..+ +=+-.-- .+.-++..
T Consensus 6 Sil~ad~~~l~~el~~l~~~---g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~-----P~~~i~~~ 77 (210)
T PRK08005 6 SLASADPLRYAEALTALHDA---PLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSS-----PQRWLPWL 77 (210)
T ss_pred ehhhCCHHHHHHHHHHHHHC---CCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCC-----HHHHHHHH
Confidence 45677777765555544443 45788888877 223444433333 2222222 35678999
Q ss_pred HHcCCCeeeCCCC
Q psy12849 74 IEAKTHHVDITGE 86 (138)
Q Consensus 74 i~~g~hYvDisge 86 (138)
+++|+++|-+=-|
T Consensus 78 ~~~gad~It~H~E 90 (210)
T PRK08005 78 AAIRPGWIFIHAE 90 (210)
T ss_pred HHhCCCEEEEccc
Confidence 9999999998666
No 455
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=60.21 E-value=21 Score=32.40 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=42.7
Q ss_pred CCCcceEEeeCCCHHHHHHHHhc--CcEEEecCCCccc---------------h-hHHHHHHHHHcCCCee
Q psy12849 29 VRTNRTTVVNTINESSILIMAKK--CRVILNCVGPYTW---------------Y-GEAVVKACIEAKTHHV 81 (138)
Q Consensus 29 ~~~~~~~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~---------------~-~~~v~~Aci~~g~hYv 81 (138)
..++.....|+.|.+.+.+.+++ .|+|.++|---+. + ...+++||+++|+..+
T Consensus 301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~ 371 (588)
T COG1086 301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKF 371 (588)
T ss_pred CcceEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEE
Confidence 45778899999999999999999 9999999942211 1 1478999999999874
No 456
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.19 E-value=15 Score=26.86 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=54.7
Q ss_pred HhhhhcCCCCcceEEeeCC-------CHHHHHHHHhcCcEEEecCCCccc--------------------hhHHHHHHHH
Q psy12849 22 QKASWFGVRTNRTTVVNTI-------NESSILIMAKKCRVILNCVGPYTW--------------------YGEAVVKACI 74 (138)
Q Consensus 22 ~~a~~~~~~~~~~~~~D~~-------d~~~L~~~~~~~dvVIn~~GPf~~--------------------~~~~v~~Aci 74 (138)
+++++.|.+.+++..-+.. +.+++.+.+++..+-|....|+.. .-...++.|-
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~ 81 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAK 81 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHH
Confidence 4455555544444333332 245788888888887666555332 1246788888
Q ss_pred HcCCCeeeCC-C------------ChHHHHHHHHHhHHHHHhCCCEEEeCC
Q psy12849 75 EAKTHHVDIT-G------------EPYFMEYMQYEYNTRAQESEVCVVSAC 112 (138)
Q Consensus 75 ~~g~hYvDis-g------------e~~~~~~~~~~~~~~A~~~gv~iv~~~ 112 (138)
+.|+.|+=+. | ....+.+.+.++-+.|++.|+++...-
T Consensus 82 ~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~ 132 (213)
T PF01261_consen 82 RLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALEN 132 (213)
T ss_dssp HHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-
T ss_pred HhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEec
Confidence 8899987763 3 111222333466777888899888663
No 457
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=59.79 E-value=16 Score=30.72 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=33.5
Q ss_pred eeCCCHHHHHHHHhcCcEEEecCCCc-----cchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 37 VNTINESSILIMAKKCRVILNCVGPY-----TWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 37 ~D~~d~~~L~~~~~~~dvVIn~~GPf-----~~~~~~v~~Aci~~g~hYvDisge 86 (138)
.+..+++.+.+.++++|+||||++.. .......++. ++.|.-.||++-+
T Consensus 216 ~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~-mk~g~vIvDva~d 269 (370)
T TIGR00518 216 TRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQ-MKPGAVIVDVAID 269 (370)
T ss_pred eccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhc-CCCCCEEEEEecC
Confidence 34556788999999999999998321 1123444433 5788889998644
No 458
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=59.45 E-value=48 Score=26.13 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHHhc-C----cEEEecCCCccchhHHHHHH
Q psy12849 8 QKLTADILKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMAKK-C----RVILNCVGPYTWYGEAVVKA 72 (138)
Q Consensus 8 ~~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~~~-~----dvVIn~~GPf~~~~~~v~~A 72 (138)
|.+.+|..++-..++..++. .++++.+|+.| ++.+..+-+. + |+=+-+.-| +.-++.
T Consensus 9 Sil~ad~~~l~~~i~~l~~~---g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P-----~~~i~~ 80 (223)
T PRK08745 9 SILSADFARLGEEVDNVLKA---GADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPV-----DRIVPD 80 (223)
T ss_pred ehhhcCHHHHHHHHHHHHHc---CCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCH-----HHHHHH
Confidence 56788888876666655553 35788888877 2223333232 2 333333333 456889
Q ss_pred HHHcCCCeeeCCCC
Q psy12849 73 CIEAKTHHVDITGE 86 (138)
Q Consensus 73 ci~~g~hYvDisge 86 (138)
++++|+++|-+=-|
T Consensus 81 ~~~~gad~I~~H~E 94 (223)
T PRK08745 81 FADAGATTISFHPE 94 (223)
T ss_pred HHHhCCCEEEEccc
Confidence 99999999998766
No 459
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=59.45 E-value=12 Score=30.97 Aligned_cols=27 Identities=4% Similarity=0.153 Sum_probs=20.1
Q ss_pred eEEeeCCCHHHHHHHHh--cCcEEEecCC
Q psy12849 34 TTVVNTINESSILIMAK--KCRVILNCVG 60 (138)
Q Consensus 34 ~~~~D~~d~~~L~~~~~--~~dvVIn~~G 60 (138)
.+..|+.|.+.|..+++ +.|+|+|+|-
T Consensus 58 ~vigDvrd~~~l~~~~~~~~pdiVfHaAA 86 (293)
T PF02719_consen 58 PVIGDVRDKERLNRIFEEYKPDIVFHAAA 86 (293)
T ss_dssp --CTSCCHHHHHHHHTT--T-SEEEE---
T ss_pred ceeecccCHHHHHHHHhhcCCCEEEEChh
Confidence 34779999999999999 8999999994
No 460
>PRK07340 ornithine cyclodeaminase; Validated
Probab=59.25 E-value=1.7 Score=35.54 Aligned_cols=43 Identities=9% Similarity=-0.004 Sum_probs=30.8
Q ss_pred HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHH
Q psy12849 44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFM 90 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~ 90 (138)
++.+.++++|+||+|. |.. +|++.+-++-|+|-.=+..+.|..
T Consensus 181 ~~~~av~~aDiVitaT-~s~---~Pl~~~~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 181 DGEAIPEAVDLVVTAT-TSR---TPVYPEAARAGRLVVAVGAFTPDM 223 (304)
T ss_pred CHHHHhhcCCEEEEcc-CCC---CceeCccCCCCCEEEecCCCCCCc
Confidence 3566778999999999 433 367777788898887776554443
No 461
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=59.23 E-value=51 Score=28.35 Aligned_cols=66 Identities=15% Similarity=0.037 Sum_probs=42.9
Q ss_pred CHHHHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEe
Q psy12849 41 NESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 41 d~~~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
-.+.+.++++. .|+|+++.+= ..|.....+|+++|.+-.=..=|.-.... ...-+.+++.|..++|
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G--~aGl~ptl~Ai~aGK~VaLANKEslV~aG--~~i~~~a~~~g~~i~P 146 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVG--AAGLLPTLAAIRAGKRIALANKESLVCAG--ELVMDAAKKSGAQILP 146 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcC--cccHHHHHHHHHCCCcEEEeCHHHHHhhH--HHHHHHHHHcCCeEEE
Confidence 45567777774 6999999953 33445688999999997664333222211 1333567778888877
No 462
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=59.08 E-value=56 Score=25.60 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCCH----------HHHHHHHhc-CcEEEecCCCccchhHHHHHHHHHc
Q psy12849 8 QKLTADILKIFLFLQKASWFGVRTNRTTVVNTINE----------SSILIMAKK-CRVILNCVGPYTWYGEAVVKACIEA 76 (138)
Q Consensus 8 ~~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d~----------~~L~~~~~~-~dvVIn~~GPf~~~~~~v~~Aci~~ 76 (138)
|.+.+|.+++-..+++.++. .++++.+|+.|- +.+..+-+. +++-+++= =-....++-++..+++
T Consensus 5 Sil~ad~~~l~~~i~~l~~~---g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvH-LMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 5 SILSADFARLGEDVEKVLAA---GADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVH-LMVKPVDRIIPDFAKA 80 (220)
T ss_pred hhhhcCHHHHHHHHHHHHHc---CCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEE-eccCCHHHHHHHHHHh
Confidence 56778887876666655553 457888888772 223333222 23322221 0011235678899999
Q ss_pred CCCeeeCCCC
Q psy12849 77 KTHHVDITGE 86 (138)
Q Consensus 77 g~hYvDisge 86 (138)
|++||-+=-|
T Consensus 81 gad~i~~H~E 90 (220)
T PRK08883 81 GASMITFHVE 90 (220)
T ss_pred CCCEEEEccc
Confidence 9999998666
No 463
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=58.98 E-value=28 Score=24.64 Aligned_cols=46 Identities=4% Similarity=0.122 Sum_probs=32.3
Q ss_pred EeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 36 VVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 36 ~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
.+.-...+++.++++.+|++++... ...+|..+++ |+..|++.|=.
T Consensus 77 ~~~~~~~~~l~~~~~~~di~v~~s~-~e~~~~~~~E-a~~~g~pvI~~ 122 (172)
T PF00534_consen 77 FLGYVPDDELDELYKSSDIFVSPSR-NEGFGLSLLE-AMACGCPVIAS 122 (172)
T ss_dssp EEESHSHHHHHHHHHHTSEEEE-BS-SBSS-HHHHH-HHHTT-EEEEE
T ss_pred ccccccccccccccccceecccccc-cccccccccc-ccccccceeec
Confidence 3444447899999999999999984 4555656555 78999999843
No 464
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=58.83 E-value=21 Score=29.72 Aligned_cols=37 Identities=11% Similarity=0.033 Sum_probs=30.7
Q ss_pred HhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCCh
Q psy12849 49 AKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEP 87 (138)
Q Consensus 49 ~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~ 87 (138)
++++|+|+-|+|.+ .....+...++.|+.-||.+++.
T Consensus 59 ~~~~D~v~~a~g~~--~s~~~a~~~~~~G~~VID~ss~~ 95 (339)
T TIGR01296 59 FEGIDIALFSAGGS--VSKEFAPKAAKCGAIVIDNTSAF 95 (339)
T ss_pred hcCCCEEEECCCHH--HHHHHHHHHHHCCCEEEECCHHH
Confidence 37999999999654 44678888899999999999864
No 465
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.72 E-value=14 Score=30.62 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=29.3
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHH---HHHHcCCCee
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVK---ACIEAKTHHV 81 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~---Aci~~g~hYv 81 (138)
....|+- .+..|...++++|+||.++|--......-++ ..+..|++|+
T Consensus 186 TVt~chs-~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~ 236 (294)
T PRK14187 186 TVTTVHS-ATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSI 236 (294)
T ss_pred EEEEeCC-CCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccc
Confidence 3334443 3345889999999999999965554333332 2344555554
No 466
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=57.98 E-value=44 Score=30.69 Aligned_cols=67 Identities=9% Similarity=-0.047 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhhhcCCCCcceEEeeCCCHHHHHHHHhcCcEEEecCCCcc-chhHHHHHHHHHcCCCee
Q psy12849 14 ILKIFLFLQKASWFGVRTNRTTVVNTINESSILIMAKKCRVILNCVGPYT-WYGEAVVKACIEAKTHHV 81 (138)
Q Consensus 14 ~~~~~~~~~~a~~~~~~~~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~-~~~~~v~~Aci~~g~hYv 81 (138)
..+|-...+.|+++.. .+.+..++....+.+.+++++.|+||..+.=|. ..-..+-++|++.|++.+
T Consensus 168 lnRIgEl~e~A~~~n~-~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~I 235 (637)
T TIGR03693 168 LDRIHELAEIAEETDD-ALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFI 235 (637)
T ss_pred hhHHHHHHHHHHHhCC-CCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeE
Confidence 3333333455666444 666777777888999999999999999997443 234688999999996653
No 467
>KOG1201|consensus
Probab=57.84 E-value=20 Score=29.87 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=34.2
Q ss_pred CcceEEeeCCCHHHHHHHHhc-------CcEEEecCC-----CccchhHHHHHHHHHc
Q psy12849 31 TNRTTVVNTINESSILIMAKK-------CRVILNCVG-----PYTWYGEAVVKACIEA 76 (138)
Q Consensus 31 ~~~~~~~D~~d~~~L~~~~~~-------~dvVIn~~G-----Pf~~~~~~v~~Aci~~ 76 (138)
++...+||+++.+++.++.++ .+++||-|| |+....+..++-|.+-
T Consensus 87 ~~~~y~cdis~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~v 144 (300)
T KOG1201|consen 87 EAKAYTCDISDREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDV 144 (300)
T ss_pred ceeEEEecCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHH
Confidence 688999999999998887774 699999998 3333445556665543
No 468
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=57.77 E-value=9.9 Score=28.99 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=26.1
Q ss_pred ceEEeeCCCHHHHHHHHh--------cCcEEEecCCCccc
Q psy12849 33 RTTVVNTINESSILIMAK--------KCRVILNCVGPYTW 64 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~--------~~dvVIn~~GPf~~ 64 (138)
+++.+|+.+++++.++++ +.|++||++|....
T Consensus 47 ~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~ 86 (241)
T PF13561_consen 47 EVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPP 86 (241)
T ss_dssp EEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTG
T ss_pred ceEeecCcchHHHHHHHHHHHhhcCCCeEEEEeccccccc
Confidence 369999999999988855 35999999986553
No 469
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=57.61 E-value=15 Score=32.13 Aligned_cols=50 Identities=16% Similarity=0.126 Sum_probs=37.8
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDIT 84 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDis 84 (138)
++......|+.++.=--.+.|+||-|+|.|.. ..-+...+++|+--||+|
T Consensus 147 ~I~V~~~~dp~~l~W~~~gVDiViE~TG~f~s--~e~a~~hl~aGAkkV~iS 196 (442)
T PLN02237 147 PIKVVSNRDPLKLPWAELGIDIVIEGTGVFVD--GPGAGKHIQAGAKKVIIT 196 (442)
T ss_pred EEEEEEcCCchhCChhhcCCCEEEEccChhhh--HHHHHHHHhCCCEEEEEC
Confidence 44445555666655323589999999999854 467889999999999998
No 470
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=57.58 E-value=14 Score=28.60 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=23.3
Q ss_pred CCCcceEEeeCCCH------HHHHHHHhcCcEEEecCCCcc
Q psy12849 29 VRTNRTTVVNTINE------SSILIMAKKCRVILNCVGPYT 63 (138)
Q Consensus 29 ~~~~~~~~~D~~d~------~~L~~~~~~~dvVIn~~GPf~ 63 (138)
.+++.++.-|++++ +....+.+++++||||++...
T Consensus 59 ~~ri~~v~GDl~~~~lGL~~~~~~~L~~~v~~IiH~Aa~v~ 99 (249)
T PF07993_consen 59 LSRIEVVEGDLSQPNLGLSDEDYQELAEEVDVIIHCAASVN 99 (249)
T ss_dssp TTTEEEEE--TTSGGGG--HHHHHHHHHH--EEEE--SS-S
T ss_pred hccEEEEeccccccccCCChHHhhccccccceeeecchhhh
Confidence 47899999999874 678888899999999998654
No 471
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=56.71 E-value=10 Score=26.21 Aligned_cols=40 Identities=8% Similarity=-0.008 Sum_probs=29.2
Q ss_pred HHHHHHHhc--CcEEEecCCCcc----chhHHHHHHHHHcCCCeee
Q psy12849 43 SSILIMAKK--CRVILNCVGPYT----WYGEAVVKACIEAKTHHVD 82 (138)
Q Consensus 43 ~~L~~~~~~--~dvVIn~~GPf~----~~~~~v~~Aci~~g~hYvD 82 (138)
..+.+++++ .|+|||...... ..|..+-++|++.|++|+.
T Consensus 61 ~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 61 PSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred hhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 456666664 799999854332 2367889999999999973
No 472
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=56.58 E-value=40 Score=27.14 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=56.5
Q ss_pred cceEEeeCCCHHHH---HHHHhcCcEEEecCCCccch--hH----HHHHHHHHcCCCeeeCCCC-hHHHHHHHHHhHHHH
Q psy12849 32 NRTTVVNTINESSI---LIMAKKCRVILNCVGPYTWY--GE----AVVKACIEAKTHHVDITGE-PYFMEYMQYEYNTRA 101 (138)
Q Consensus 32 ~~~~~~D~~d~~~L---~~~~~~~dvVIn~~GPf~~~--~~----~v~~Aci~~g~hYvDisge-~~~~~~~~~~~~~~A 101 (138)
+.|-+.-+..++.| .++.++++|-+..-|.++.+ .. .-++.|-+.|..+|-+|.- .++-.+...+|=+++
T Consensus 30 fg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~ 109 (237)
T TIGR03849 30 FGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERA 109 (237)
T ss_pred ecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHH
Confidence 34444455564444 44556789999999966533 12 3345999999999998654 333333334666789
Q ss_pred HhCCCEEEeCCCCc
Q psy12849 102 QESEVCVVSACGIE 115 (138)
Q Consensus 102 ~~~gv~iv~~~G~d 115 (138)
+++|..+++.+|.-
T Consensus 110 ~~~g~~v~~EvG~K 123 (237)
T TIGR03849 110 KDNGFMVLSEVGKK 123 (237)
T ss_pred HhCCCeEecccccc
Confidence 99999999999963
No 473
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.53 E-value=9.2 Score=31.45 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=28.8
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....|+- .+..|...++++|+||.++|--....... ++.|+-.||+
T Consensus 184 TVt~chs-~T~dl~~~~k~ADIvIsAvGkp~~i~~~~----vk~gavVIDv 229 (282)
T PRK14180 184 TVTTCHR-FTTDLKSHTTKADILIVAVGKPNFITADM----VKEGAVVIDV 229 (282)
T ss_pred EEEEEcC-CCCCHHHHhhhcCEEEEccCCcCcCCHHH----cCCCcEEEEe
Confidence 3444443 23458889999999999999655544333 3444444444
No 474
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=56.44 E-value=18 Score=28.85 Aligned_cols=66 Identities=20% Similarity=0.101 Sum_probs=39.7
Q ss_pred cCcEEEecCCCcc----ch----hHHHHHHHHHcC-CCeeeCCCChHHHHHHHHHhHHHHHhCCCEEEeCC-CCccch
Q psy12849 51 KCRVILNCVGPYT----WY----GEAVVKACIEAK-THHVDITGEPYFMEYMQYEYNTRAQESEVCVVSAC-GIETLP 118 (138)
Q Consensus 51 ~~dvVIn~~GPf~----~~----~~~v~~Aci~~g-~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv~~~-G~d~~p 118 (138)
+.-+++.+--+.. .. -..+++.+++.| ++|||+=-..+ ......+-..+++.|..+|.+- =|+..|
T Consensus 74 ~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~--~~~~~~l~~~~~~~~~kvI~S~H~f~~tP 149 (253)
T PRK02412 74 GKPLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG--KDVVKEMVAFAHEHGVKVVLSYHDFEKTP 149 (253)
T ss_pred CCcEEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC--hHHHHHHHHHHHHcCCEEEEeeCCCCCCc
Confidence 4577887763320 11 125788899999 99999932111 1122344456777888888775 455666
No 475
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=56.25 E-value=9.6 Score=31.62 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=28.8
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....|+- .+..|...++++|+||.++|--.... .--++.|+-.||+
T Consensus 193 TVtvchs-~T~nl~~~~~~ADIvv~AvGk~~~i~----~~~vk~gavVIDv 238 (299)
T PLN02516 193 TVTVVHS-RTPDPESIVREADIVIAAAGQAMMIK----GDWIKPGAAVIDV 238 (299)
T ss_pred EEEEeCC-CCCCHHHHHhhCCEEEEcCCCcCccC----HHHcCCCCEEEEe
Confidence 3344433 33458999999999999999654433 2334455555554
No 476
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.22 E-value=13 Score=30.29 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=34.1
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
.....++- ....|.+.++++|+||||+|--. ++-..-++.|+--+|+...
T Consensus 184 atVtv~~~-~t~~L~~~~~~aDIvI~AtG~~~----~v~~~~lk~gavViDvg~n 233 (283)
T PRK14192 184 ATVTICHS-RTQNLPELVKQADIIVGAVGKPE----LIKKDWIKQGAVVVDAGFH 233 (283)
T ss_pred CEEEEEeC-CchhHHHHhccCCEEEEccCCCC----cCCHHHcCCCCEEEEEEEe
Confidence 34445554 56779999999999999997221 3334457788888887433
No 477
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=55.97 E-value=14 Score=30.25 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=28.2
Q ss_pred cCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 51 KCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 51 ~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
+.|+|+.|++++. + ...+..|+++|+|.+|.+.-
T Consensus 64 dIDaV~iaTp~~~-H-~e~a~~al~aGk~VIdekPa 97 (285)
T TIGR03215 64 DIDIVFDATSAKA-H-ARHARLLAELGKIVIDLTPA 97 (285)
T ss_pred CCCEEEECCCcHH-H-HHHHHHHHHcCCEEEECCcc
Confidence 6899999997654 4 47789999999999998664
No 478
>PRK06091 membrane protein FdrA; Validated
Probab=55.93 E-value=46 Score=30.03 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=49.6
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChHHHHHHHHHhHHHHHhCCCEEE-eCCCC
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVV-SACGI 114 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~~~~~~~~~~~~~A~~~gv~iv-~~~G~ 114 (138)
...+..+-+.+.|++|-++ |-. +...+++.|++.|.+-+=+|+..+ ...+.++-+.|+++|+.++ |.||+
T Consensus 107 t~~~a~~~lpe~DLAvIsV-Pa~-~v~~al~ea~~~G~~viI~S~gfg--~~~E~~L~e~Ar~~GlrvmGPNCG~ 177 (555)
T PRK06091 107 RWDSACQKLPDANLALISV-AGE-YAAELAEQALDRNLNVMMFSDNVT--LEDEIRLKTRAREKGLLVMGPDCGT 177 (555)
T ss_pred cHHHHHhcCCCCCEEEEec-CHH-HHHHHHHHHHHcCCeEEEEcCCCC--HHHHHHHHHHHHHcCCEEECCCChh
Confidence 3344444455679999999 533 335789999999988776566554 3345678899999999887 56763
No 479
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=55.72 E-value=21 Score=27.58 Aligned_cols=32 Identities=6% Similarity=0.019 Sum_probs=25.3
Q ss_pred HHhcCcEEEecCCCccchhHHHHHHHHHcCCCe
Q psy12849 48 MAKKCRVILNCVGPYTWYGEAVVKACIEAKTHH 80 (138)
Q Consensus 48 ~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hY 80 (138)
.+.++++||-|.|= .....++.+.|.+.|+.+
T Consensus 66 dl~~~~lVi~at~d-~~ln~~i~~~a~~~~ilv 97 (205)
T TIGR01470 66 ILEGAFLVIAATDD-EELNRRVAHAARARGVPV 97 (205)
T ss_pred HhCCcEEEEECCCC-HHHHHHHHHHHHHcCCEE
Confidence 35688999988864 335679999999999887
No 480
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=55.60 E-value=55 Score=23.87 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=33.1
Q ss_pred eEEeeCCCHHH--HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCC
Q psy12849 34 TTVVNTINESS--ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGE 86 (138)
Q Consensus 34 ~~~~D~~d~~~--L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge 86 (138)
.+.-|.||... +..+++..-.=+=..|+.. ..+.++++|.+.+++-|=+|.-
T Consensus 8 tv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v-~~e~~v~aa~~~~adiVglS~l 61 (134)
T TIGR01501 8 VIGSDCHAVGNKILDHAFTNAGFNVVNLGVLS-PQEEFIKAAIETKADAILVSSL 61 (134)
T ss_pred EecCChhhHhHHHHHHHHHHCCCEEEECCCCC-CHHHHHHHHHHcCCCEEEEecc
Confidence 34456666543 5556665544444556654 3478888888888888887663
No 481
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=55.48 E-value=33 Score=27.63 Aligned_cols=58 Identities=10% Similarity=0.117 Sum_probs=28.7
Q ss_pred HHHHhcCcEEEecCCCccchhHHHHH------HHHHcCCCeeeCC-CChHHHHHHHHHhHHHHHhCCCEE
Q psy12849 46 LIMAKKCRVILNCVGPYTWYGEAVVK------ACIEAKTHHVDIT-GEPYFMEYMQYEYNTRAQESEVCV 108 (138)
Q Consensus 46 ~~~~~~~dvVIn~~GPf~~~~~~v~~------Aci~~g~hYvDis-ge~~~~~~~~~~~~~~A~~~gv~i 108 (138)
.++++++|+||-|+ |-...-+.++. ..+..|+-+||.+ +.+...+++. +..+++|+.+
T Consensus 52 ~~~~~~aDvVi~~v-p~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~----~~l~~~g~~~ 116 (296)
T PRK15461 52 AQAAAGAEFVITML-PNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLI----ADMQAKGFSM 116 (296)
T ss_pred HHHHhcCCEEEEec-CCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHH----HHHHHcCCcE
Confidence 44566778888887 33321122321 1234566777764 3444444433 3344445443
No 482
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=55.22 E-value=48 Score=27.73 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=28.8
Q ss_pred HHHHhcCcEEEecCCCccchhHHHHHH---HHHcCCCeeeCCCChHH
Q psy12849 46 LIMAKKCRVILNCVGPYTWYGEAVVKA---CIEAKTHHVDITGEPYF 89 (138)
Q Consensus 46 ~~~~~~~dvVIn~~GPf~~~~~~v~~A---ci~~g~hYvDisge~~~ 89 (138)
.+.++++|+||-|+ |+...-+.+++. .+..|+..+|+|.-.+.
T Consensus 76 ~eaa~~ADvVIlaV-P~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~ 121 (342)
T PRK12557 76 AEAAKHGEIHILFT-PFGKKTVEIAKNILPHLPENAVICNTCTVSPV 121 (342)
T ss_pred HHHHhCCCEEEEEC-CCcHHHHHHHHHHHhhCCCCCEEEEecCCCHH
Confidence 34668999999999 766523455543 34568889998654443
No 483
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=55.12 E-value=92 Score=25.34 Aligned_cols=85 Identities=9% Similarity=0.043 Sum_probs=50.1
Q ss_pred HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC-CCChHHHHHHHHHhHHHHHhCCCEEEeCCCCccchHhHH
Q psy12849 44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI-TGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMG 122 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi-sge~~~~~~~~~~~~~~A~~~gv~iv~~~G~d~~p~dl~ 122 (138)
++-+.++.--=++|+++--..-=..++..+.+.|...+=+ |||+...-.+.+.- ++-++.|+ .|+.+||-..
T Consensus 42 elL~~~~~~aei~nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm-~~L~~~gI------~yevvPGVss 114 (254)
T COG2875 42 ELLEYCRPDAEIVNSASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQM-RELEALGI------PYEVVPGVSS 114 (254)
T ss_pred HHHhhcCCCCEEEecCcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHH-HHHHHcCC------CeEEeCCchH
Confidence 3444444444566777533222346677778888888776 88888776654332 22344444 4556666666
Q ss_pred HHHHHHHhhhhcC
Q psy12849 123 VLMLQDSFEGHSG 135 (138)
Q Consensus 123 ~~~~~~~~~~~~~ 135 (138)
..-++..|...||
T Consensus 115 ~~AAAA~L~~ELT 127 (254)
T COG2875 115 FAAAAAALGIELT 127 (254)
T ss_pred HHHHHHHhCceee
Confidence 6666666665554
No 484
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=54.97 E-value=17 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=29.2
Q ss_pred EEecCCCccch-hHHHHHHHHHcCCCeeeCCCChHHHHHH
Q psy12849 55 ILNCVGPYTWY-GEAVVKACIEAKTHHVDITGEPYFMEYM 93 (138)
Q Consensus 55 VIn~~GPf~~~-~~~v~~Aci~~g~hYvDisge~~~~~~~ 93 (138)
||+-.--|-.. -.++++||-..|..|||+..+++.++..
T Consensus 17 VIsGLnNFd~~~V~~i~~AA~~ggAt~vDIAadp~LV~~~ 56 (242)
T PF04481_consen 17 VISGLNNFDAESVAAIVKAAEIGGATFVDIAADPELVKLA 56 (242)
T ss_pred heeCccccCHHHHHHHHHHHHccCCceEEecCCHHHHHHH
Confidence 45555444322 3588999999999999999999988754
No 485
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=54.97 E-value=90 Score=24.01 Aligned_cols=92 Identities=13% Similarity=0.167 Sum_probs=59.6
Q ss_pred HHHHhhhhcCCCCcceEE-----eeCCCHHHHHHHHhcCcEEEecCCCccc--hh-HH------------HHHHHHHcCC
Q psy12849 19 LFLQKASWFGVRTNRTTV-----VNTINESSILIMAKKCRVILNCVGPYTW--YG-EA------------VVKACIEAKT 78 (138)
Q Consensus 19 ~~~~~a~~~~~~~~~~~~-----~D~~d~~~L~~~~~~~dvVIn~~GPf~~--~~-~~------------v~~Aci~~g~ 78 (138)
..++++.+.|.+.++... .+..+.+++.+.++...+.+...+|+.. .. .+ +++.|.+.|+
T Consensus 19 ~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~ 98 (274)
T COG1082 19 EILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGA 98 (274)
T ss_pred HHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCC
Confidence 456677777754444442 2222378999999999999988778876 22 22 8888999998
Q ss_pred CeeeC-CC----C----------hHHHHHHHHHhHHHHHhCCCEEEeC
Q psy12849 79 HHVDI-TG----E----------PYFMEYMQYEYNTRAQESEVCVVSA 111 (138)
Q Consensus 79 hYvDi-sg----e----------~~~~~~~~~~~~~~A~~~gv~iv~~ 111 (138)
.++=+ +| . ..|.+.+ .++.+.|++.|+.+-..
T Consensus 99 ~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l-~~l~~~a~~~~i~l~~e 145 (274)
T COG1082 99 KVVVVHPGLGAGADDPDSPEEARERWAEAL-EELAEIAEELGIGLALE 145 (274)
T ss_pred CeEEeecccCCcCCCCCCCcccHHHHHHHH-HHHHHHHHHhCCceEEe
Confidence 86652 22 1 1244444 47777777777766555
No 486
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=54.73 E-value=1.2e+02 Score=24.78 Aligned_cols=94 Identities=6% Similarity=-0.017 Sum_probs=52.0
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCC-Ce--eeCC--CChHHHHHHHHHhHHHHHhCCC
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKT-HH--VDIT--GEPYFMEYMQYEYNTRAQESEV 106 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~-hY--vDis--ge~~~~~~~~~~~~~~A~~~gv 106 (138)
+.++.=-+...+.+.++.+...+=| |+|=. .+...=++..++.+. ++ +|++ |-..-.. +.-+.|++.|+
T Consensus 185 i~~iEqP~~~~~~~~~l~~~~~~Pi-a~dEs-~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~----~i~~~a~~~gi 258 (307)
T TIGR01927 185 IAFLEEPLPDADEMSAFSEATGTAI-ALDES-LWELPQLADEYGPGWRGALVIKPAIIGSPAKLR----DLAQKAHRLGL 258 (307)
T ss_pred ceEEeCCCCCHHHHHHHHHhCCCCE-EeCCC-cCChHHHHHHHhcCCCceEEECchhcCCHHHHH----HHHHHHHHcCC
Confidence 4444433333355666655554433 22211 122233444455443 44 3433 3333332 34467899999
Q ss_pred EEEeCCCCccchHhHHHHHHHHHhh
Q psy12849 107 CVVSACGIETLPIDMGVLMLQDSFE 131 (138)
Q Consensus 107 ~iv~~~G~d~~p~dl~~~~~~~~~~ 131 (138)
.++++|.+++..+...+.+++..+.
T Consensus 259 ~~~~~~~~es~i~~aa~~hlaa~~~ 283 (307)
T TIGR01927 259 QAVFSSVFESSIALGQLARLAAKLS 283 (307)
T ss_pred CEEEECccchHHHHHHHHHHHHHhC
Confidence 9999999988888877777776553
No 487
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.71 E-value=78 Score=22.75 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=29.9
Q ss_pred eCCCHHH--HHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeCCCChH
Q psy12849 38 NTINESS--ILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPY 88 (138)
Q Consensus 38 D~~d~~~--L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDisge~~ 88 (138)
|.+|... +..+++..-.-|--.|.+. ..+.+++++.+.+.+.|=+|+-..
T Consensus 13 D~Hd~g~~iv~~~l~~~GfeVi~lg~~~-s~e~~v~aa~e~~adii~iSsl~~ 64 (132)
T TIGR00640 13 DGHDRGAKVIATAYADLGFDVDVGPLFQ-TPEEIARQAVEADVHVVGVSSLAG 64 (132)
T ss_pred CccHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHHcCCCEEEEcCchh
Confidence 5555432 4555554433333344553 346788888888888888877543
No 488
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.52 E-value=18 Score=29.76 Aligned_cols=26 Identities=4% Similarity=0.138 Sum_probs=20.6
Q ss_pred CHHHHHHHHhcCcEEEecCCCccchh
Q psy12849 41 NESSILIMAKKCRVILNCVGPYTWYG 66 (138)
Q Consensus 41 d~~~L~~~~~~~dvVIn~~GPf~~~~ 66 (138)
.+..|...++++|+||.++|-.....
T Consensus 190 ~T~nl~~~~~~ADIvI~AvGk~~~i~ 215 (282)
T PRK14182 190 RTADLAGEVGRADILVAAIGKAELVK 215 (282)
T ss_pred CCCCHHHHHhhCCEEEEecCCcCccC
Confidence 34568899999999999999655443
No 489
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=54.45 E-value=51 Score=26.56 Aligned_cols=65 Identities=17% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCHHHHHHHHhcCcEEEecCCCccchhHHHHHH---HHHcCCCeeeCCCChH-HHHHHHHHhHHHHHhCCCEEEe
Q psy12849 40 INESSILIMAKKCRVILNCVGPYTWYGEAVVKA---CIEAKTHHVDITGEPY-FMEYMQYEYNTRAQESEVCVVS 110 (138)
Q Consensus 40 ~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~A---ci~~g~hYvDisge~~-~~~~~~~~~~~~A~~~gv~iv~ 110 (138)
.+.+++.+.++++|+|+-|+ |.. .-+.+++. .++.|.-+||.+...+ -.. +..++.+++|+.++-
T Consensus 48 ~s~~~~~~~~~~~dvIi~~v-p~~-~~~~v~~~l~~~l~~g~ivid~st~~~~~t~----~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 48 ANLRELSQRLSAPRVVWVMV-PHG-IVDAVLEELAPTLEKGDIVIDGGNSYYKDSL----RRYKLLKEKGIHLLD 116 (298)
T ss_pred CCHHHHHhhcCCCCEEEEEc-Cch-HHHHHHHHHHhhCCCCCEEEECCCCCcccHH----HHHHHHHhcCCeEEe
Confidence 35556666677899999999 554 33455443 3456888999866543 232 333456677876553
No 490
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.35 E-value=75 Score=26.19 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=31.7
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....++ ++...|.+.++++|+||.++|--.......+ +-|+-.||+
T Consensus 187 tVt~~h-s~t~~l~~~~~~ADIVI~AvG~p~li~~~~v----k~GavVIDV 232 (286)
T PRK14184 187 TVTVCH-SRTPDLAEECREADFLFVAIGRPRFVTADMV----KPGAVVVDV 232 (286)
T ss_pred EEEEEe-CCchhHHHHHHhCCEEEEecCCCCcCCHHHc----CCCCEEEEe
Confidence 334444 3556799999999999999986655544433 566666665
No 491
>PLN02996 fatty acyl-CoA reductase
Probab=54.30 E-value=16 Score=31.83 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=27.6
Q ss_pred CCcceEEeeCC-------CHHHHHHHHhcCcEEEecCCCc
Q psy12849 30 RTNRTTVVNTI-------NESSILIMAKKCRVILNCVGPY 62 (138)
Q Consensus 30 ~~~~~~~~D~~-------d~~~L~~~~~~~dvVIn~~GPf 62 (138)
.++.++..|+. +.+.+.++++++|+|||||+..
T Consensus 84 ~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v 123 (491)
T PLN02996 84 EKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATT 123 (491)
T ss_pred cCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECcccc
Confidence 57888899987 5566788999999999999863
No 492
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.17 E-value=10 Score=31.11 Aligned_cols=46 Identities=13% Similarity=0.327 Sum_probs=30.0
Q ss_pred ceEEeeCCCHHHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 33 RTTVVNTINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 33 ~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
....|+- ....|...++++|+||.++|--...... -++.|+-.||+
T Consensus 184 tVt~chs-~T~~l~~~~~~ADIvIsAvGkp~~i~~~----~ik~gavVIDv 229 (278)
T PRK14172 184 TVTICHS-KTKNLKEVCKKADILVVAIGRPKFIDEE----YVKEGAIVIDV 229 (278)
T ss_pred EEEEeCC-CCCCHHHHHhhCCEEEEcCCCcCccCHH----HcCCCcEEEEe
Confidence 3444443 3456999999999999999965554333 34555555554
No 493
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=53.94 E-value=7.8 Score=29.13 Aligned_cols=33 Identities=9% Similarity=0.290 Sum_probs=21.1
Q ss_pred cceEEeeCCCHHHHHHHHhcCcEEEecCCCccch
Q psy12849 32 NRTTVVNTINESSILIMAKKCRVILNCVGPYTWY 65 (138)
Q Consensus 32 ~~~~~~D~~d~~~L~~~~~~~dvVIn~~GPf~~~ 65 (138)
.....++-. ...+.+.++++|+||.++|-....
T Consensus 61 atVt~~h~~-T~~l~~~~~~ADIVVsa~G~~~~i 93 (160)
T PF02882_consen 61 ATVTICHSK-TKNLQEITRRADIVVSAVGKPNLI 93 (160)
T ss_dssp -EEEEE-TT-SSSHHHHHTTSSEEEE-SSSTT-B
T ss_pred CeEEeccCC-CCcccceeeeccEEeeeecccccc
Confidence 344445443 356899999999999999965443
No 494
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=53.82 E-value=14 Score=31.29 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=24.8
Q ss_pred HHHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
..+.+.++++|+||.++|--...... -++-|+-.||+
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~~d----~vk~GavVIDV 285 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVRGS----WLKPGAVVIDV 285 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHH----HcCCCCEEEEc
Confidence 44888999999999999965554333 33444444444
No 495
>PRK08291 ectoine utilization protein EutC; Validated
Probab=53.73 E-value=3.4 Score=34.07 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=24.4
Q ss_pred HHHHHhcCcEEEecCCCccchhHHHHHH-HHHcCCCeeeC
Q psy12849 45 ILIMAKKCRVILNCVGPYTWYGEAVVKA-CIEAKTHHVDI 83 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~~~~~v~~A-ci~~g~hYvDi 83 (138)
+.+.++++|+|++|. |.. +|++++ -++.|+|-..+
T Consensus 191 ~~~al~~aDiVi~aT-~s~---~p~i~~~~l~~g~~v~~v 226 (330)
T PRK08291 191 VHEAVAGADIIVTTT-PSE---EPILKAEWLHPGLHVTAM 226 (330)
T ss_pred HHHHHccCCEEEEee-CCC---CcEecHHHcCCCceEEee
Confidence 566778999999998 543 356655 36777776554
No 496
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=53.64 E-value=23 Score=29.30 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=28.2
Q ss_pred HHHHHhcCcEEEecCCCccc-hhHHHHHHHHHcCCCee
Q psy12849 45 ILIMAKKCRVILNCVGPYTW-YGEAVVKACIEAKTHHV 81 (138)
Q Consensus 45 L~~~~~~~dvVIn~~GPf~~-~~~~v~~Aci~~g~hYv 81 (138)
+.++++++|+||.|..=|.. +-..+=++|.+.|+++|
T Consensus 145 ~~~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV 182 (318)
T TIGR03603 145 LKDLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNT 182 (318)
T ss_pred HHHHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEE
Confidence 56789999999999964431 11226699999999986
No 497
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=53.50 E-value=18 Score=27.97 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=26.9
Q ss_pred HHHHHHHhcCcEEEecCCCccch------------------hHHHHHHHHHcCC
Q psy12849 43 SSILIMAKKCRVILNCVGPYTWY------------------GEAVVKACIEAKT 78 (138)
Q Consensus 43 ~~L~~~~~~~dvVIn~~GPf~~~------------------~~~v~~Aci~~g~ 78 (138)
..+...++++|+||||+|..... ...++++|.+.|+
T Consensus 49 ~~~~~~~~~~D~Vvh~a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~ 102 (292)
T TIGR01777 49 LAESEALEGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQ 102 (292)
T ss_pred cchhhhcCCCCEEEECCCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCC
Confidence 45567788999999999864310 3578899999886
No 498
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=53.48 E-value=37 Score=29.29 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=43.5
Q ss_pred HHHHHHhcCcEEEecCCCccchhHHHHHHHHHcCCCeeeC-C-C--ChHH-HHHHHHHhHHHHHhCCCEEE
Q psy12849 44 SILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDI-T-G--EPYF-MEYMQYEYNTRAQESEVCVV 109 (138)
Q Consensus 44 ~L~~~~~~~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi-s-g--e~~~-~~~~~~~~~~~A~~~gv~iv 109 (138)
++.++=...|++|-|+.| ... ..+++.|++.|++.+=+ + | |..- -..++.++.+.|++.|+.++
T Consensus 57 sl~~lp~~~Dlavi~vp~-~~~-~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 57 SVLEIPDPVDLAVIVVPA-KYV-PQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred CHHHCCCCCCEEEEecCH-HHH-HHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 455555678999999954 333 58999999999998743 1 1 1110 11234566788999999988
No 499
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=53.46 E-value=30 Score=29.67 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=36.7
Q ss_pred EEeeCCCHHHHHHHHhc--CcEEEecCCCccchhHHHHHHHHHcCCCeeeC
Q psy12849 35 TVVNTINESSILIMAKK--CRVILNCVGPYTWYGEAVVKACIEAKTHHVDI 83 (138)
Q Consensus 35 ~~~D~~d~~~L~~~~~~--~dvVIn~~GPf~~~~~~v~~Aci~~g~hYvDi 83 (138)
..+|..|.++|.++++. .|+|+ .||-...-..+++.|-+.|..++..
T Consensus 50 ~~~~~~d~~~l~~~a~~~~iD~Vv--~g~E~~l~~glad~~~~~Gip~~Gp 98 (426)
T PRK13789 50 DSFSILDKSSVQSFLKSNPFDLIV--VGPEDPLVAGFADWAAELGIPCFGP 98 (426)
T ss_pred cCcCcCCHHHHHHHHHHcCCCEEE--ECCchHHHHHHHHHHHHcCCCcCCC
Confidence 34788999999999997 78888 4665544456788888999998744
No 500
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=53.27 E-value=10 Score=29.42 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCcceEEeeCCC----------HHHHHHHHhcC----cEEEecCCCccchhHHHHHHHH
Q psy12849 9 KLTADILKIFLFLQKASWFGVRTNRTTVVNTIN----------ESSILIMAKKC----RVILNCVGPYTWYGEAVVKACI 74 (138)
Q Consensus 9 ~~~~d~~~~~~~~~~a~~~~~~~~~~~~~D~~d----------~~~L~~~~~~~----dvVIn~~GPf~~~~~~v~~Aci 74 (138)
.+.+|.+++-..++..++.+ ++++.+|+.| ++.+..+-+.+ |+=+-..-| ...++.+.
T Consensus 6 il~ad~~~l~~~i~~l~~~g---~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P-----~~~i~~~~ 77 (201)
T PF00834_consen 6 ILSADFLNLEEEIKRLEEAG---ADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENP-----ERYIEEFA 77 (201)
T ss_dssp GGGS-GGGHHHHHHHHHHTT----SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSG-----GGHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHcC---CCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccH-----HHHHHHHH
Confidence 45567666666666555543 5788888877 55566655544 333444444 35788999
Q ss_pred HcCCCeeeCCCC
Q psy12849 75 EAKTHHVDITGE 86 (138)
Q Consensus 75 ~~g~hYvDisge 86 (138)
++|++||-+=-|
T Consensus 78 ~~g~~~i~~H~E 89 (201)
T PF00834_consen 78 EAGADYITFHAE 89 (201)
T ss_dssp HHT-SEEEEEGG
T ss_pred hcCCCEEEEccc
Confidence 999999886443
Done!