RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12849
(138 letters)
>gnl|CDD|225807 COG3268, COG3268, Uncharacterized conserved protein [Function
unknown].
Length = 382
Score = 99.1 bits (247), Expect = 1e-25
Identities = 35/92 (38%), Positives = 53/92 (57%)
Query: 39 TINESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYN 98
+++ MA + +V+LNCVGPYT YGE +V AC A T + DITGE F E Y+
Sbjct: 59 LGVPAALEAMASRTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYH 118
Query: 99 TRAQESEVCVVSACGIETLPIDMGVLMLQDSF 130
+A ++ ++ CG +++P D+GV L
Sbjct: 119 AQAADAGARIIPGCGFDSIPSDLGVYALLKQA 150
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms this
enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 380
Score = 55.0 bits (133), Expect = 8e-10
Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 17/126 (13%)
Query: 21 LQKASWFGVRTNRTTVVNTI-NESSILIMAKKCRVILNCVGPYTWYGEAVVKACIEAKTH 79
Q + + + N +++ + K+ +++N P+ V+KACIE H
Sbjct: 35 AQALAAPKLGLRFIAIAVDADNYEALVALLKEGDLVINLAPPF--LSLTVLKACIETGVH 92
Query: 80 HVDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLPIDMGV----------LMLQDS 129
+VD + ++ Q + +A+++ V V CG + + + L S
Sbjct: 93 YVDTS----YLREAQLALHEKAKDAGVTAVLGCGFDPGLVSLFAKYALDDLADELAKVLS 148
Query: 130 FEGHSG 135
+ H G
Sbjct: 149 VKIHCG 154
>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 41.9 bits (99), Expect = 3e-05
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 54 VILNCVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYNTRAQESEVCVVSACG 113
+++N P+ ++KACI+ +VD + + E ++ + A+++ + V CG
Sbjct: 71 LVINAAPPF--VDLTILKACIKTGVDYVDTS----YYEEPPWKLDEEAKKAGITAVLGCG 124
Query: 114 I 114
Sbjct: 125 F 125
>gnl|CDD|236307 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 32.1 bits (74), Expect = 0.063
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 12/44 (27%)
Query: 66 GEAVVKACIE-----AKTHH--VDITGEPYFMEYMQYEYNTRAQ 102
GEA VKA A T + GE YF+E M NTR Q
Sbjct: 256 GEAAVKAAKAIGYRGAGTIEFLYEKNGEFYFIE-M----NTRIQ 294
>gnl|CDD|223516 COG0439, AccC, Biotin carboxylase [Lipid metabolism].
Length = 449
Score = 31.1 bits (71), Expect = 0.13
Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 66 GEAVVKACIE-----AKTHH--VDITGEPYFMEYMQYEYNTRAQESEVCVVSACGIETLP 118
GEA V+A A T D GE YF+E M NTR Q E V
Sbjct: 256 GEAAVRAAKLIGYRGAGTVEFLYDSNGEFYFIE-M----NTRLQ-VEHPVTE----MVTG 305
Query: 119 IDMGVLMLQ 127
ID+ ++
Sbjct: 306 IDLVKEQIR 314
>gnl|CDD|224418 COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl
hydrolases [Carbohydrate transport and metabolism].
Length = 772
Score = 28.1 bits (63), Expect = 1.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 81 VDITGEPYFM------EYMQYEYNTRAQESEVCVVSACGIETLPIDMGVL 124
D+TG+P Y ++ + + +P+D+ VL
Sbjct: 252 TDLTGKPPLPPKWALGWLWTSRYTYYDEDEVLEFIDEMRERDIPLDVFVL 301
>gnl|CDD|193121 pfam12643, MazG-like, MazG-like family. This family of short
proteins are distantly related to the MazG enzyme. This
suggests that these proteins are enzymes that catalyze
a related reaction.
Length = 98
Score = 25.6 bits (57), Expect = 5.1
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 1 MQNVNVNQKLTADILKIFLFLQKASWFGVRTNRTTVVNTINESSILI----MAKK 51
M+N+ + + L A++L I L KA G + +++ + + I+I +A++
Sbjct: 2 MKNIKIIEWLKAELLCIVGELFKALTKGSEVAQEAILDCL--AGIIIILYLLARR 54
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 26.0 bits (58), Expect = 6.2
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 92 YMQYEYNTRAQESEV-CVVSACG 113
Y +YE + ES + V A G
Sbjct: 161 YWKYENWLKRAESRLGSTVGANG 183
>gnl|CDD|220420 pfam09815, XK-related, XK-related protein. Members of this family
comprise various XK-related proteins, that are involved
in sodium-dependent transport of neutral amino acids or
oligopeptides. These proteins are responsible for the Kx
blood group system - defects results in McLeod syndrome,
an X-linked multi-system disorder characterized by late
onset abnormalities in the neuromuscular and
hematopoietic systems.
Length = 334
Score = 26.1 bits (58), Expect = 6.8
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 58 CVGPYTWYGEAVVKACIEAKTHHVDITGEPYFMEYMQYEYN 98
+G Y A+ + + EPYF Y+ +E
Sbjct: 80 QLGILIRYLHALRLGLRVWRREE---SEEPYFYRYLVFEEA 117
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.404
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,509,123
Number of extensions: 536915
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 11
Length of query: 138
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 51
Effective length of database: 7,078,804
Effective search space: 361019004
Effective search space used: 361019004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.5 bits)