BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1285
(118 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + V L GHR + +D D ++++S S D+TIK+W
Sbjct: 226 MVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 281
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
+ VR NG + S D TI+LWD+
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 323
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 28/101 (27%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD+ TL +L GH + + + D R +I+ S D T+++WDV
Sbjct: 157 IWDKNTLECKR-----ILTGHTGSVLCL--QYDERVIITGSSDSTVRVWDVNTGEMLNTL 209
Query: 67 ----------KFNGAAN---SKDQTIKLWDVRKFSNKTAQR 94
+FN SKD++I +WD+ ++ T +R
Sbjct: 210 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 25/86 (29%)
Query: 47 DSRHLISNSKDQTIKLWD------VRKFNG---------------AANSKDQTIKLWDVR 85
D + ++S +D TIK+WD R G S D T+++WDV
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDV- 200
Query: 86 KFSNKTAQRNTFRAVCEQNWEYRREN 111
N NT CE R N
Sbjct: 201 ---NTGEMLNTLIHHCEAVLHLRFNN 223
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 145 LIVSGSFDESVRIWDVK 161
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 157 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 211
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 212 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 109 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 103 LLVSASDDKTLKIWDV 118
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 143 LIVSGSFDESVRIWDVK 159
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 155 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 210 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 107 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 101 LLVSASDDKTLKIWDV 116
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 124 LIVSGSFDESVRIWDVK 140
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 --AANSKDQTIKLWDVR 85
+ S D+T+K+WDV
Sbjct: 82 LLVSASDDKTLKIWDVS 98
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T + L H D ++ + D ++S+S D ++WD
Sbjct: 136 IWDVKT-----GMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 138 LIVSGSFDESVRIWDVK 154
Score = 28.5 bits (62), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 150 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 204
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 205 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 102 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 96 LLVSASDDKTLKIWDV 111
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 121 LIVSGSFDESVRIWDVK 137
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 133 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 79 LLVSASDDKTLKIWDV 94
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 124 LIVSGSFDESVRIWDVK 140
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 82 LLVSASDDKTLKIWDV 97
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 127 LIVSGSFDESVRIWDVK 143
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 139 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 85 LLVSASDDKTLKIWDV 100
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 127 LIVSGSFDESVRIWDVK 143
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 139 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 85 LLVSASDDKTLKIWDV 100
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 127 LIVSGSFDESVRIWDVK 143
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 139 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 193
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 194 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 91 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 85 LLVSASDDKTLKIWDV 100
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 126 LIVSGSFDESVRIWDVK 142
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 138 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 192
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 193 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 90 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 84 LLVSASDDKTLKIWDV 99
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 121 LIVSGSFDESVRIWDVK 137
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 133 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 188 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 85 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 79 LLVSASDDKTLKIWDV 94
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 122 LIVSGSFDESVRIWDVK 138
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 134 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 188
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 189 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 86 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 80 LLVSASDDKTLKIWDV 95
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 117 LIVSGSFDESVRIWDVK 133
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 129 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 183
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 184 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 81 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 75 LLVSASDDKTLKIWDV 90
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 120 LIVSGSFDESVRIWDVK 136
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 132 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 186
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 187 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 84 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 78 LLVSASDDKTLKIWDV 93
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 124 LIVSGSFDESVRIWDVK 140
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 136 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 82 LLVSASDDKTLKIWDV 97
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 124 LIVSGSFDESVRIWDVK 140
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 136 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
LAGH ++ + + L S+S D+ IK+W + +G
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 71 --AANSKDQTIKLWDV 84
+ S D+T+K+WDV
Sbjct: 82 LLVSASDDKTLKIWDV 97
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
++GH+ GI+ + DS L+S S D+T+K+WDV FN +N
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDV+
Sbjct: 124 LIVSGSFDESVRIWDVK 140
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD +T K + L H D ++ + D ++S+S D ++WD
Sbjct: 136 IWDVKT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 190
Query: 67 -----------KF--NG---AANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 191 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 17 DRRTL---NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D +TL + ++ K + L GH + + + S ++S S D+++++WDV+
Sbjct: 88 DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF--------------------NG- 70
L GH D + I + L S S D TIKLWD + F NG
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 71 --AANSKDQTIKLWDVR 85
+ S+D+TIK+W+V+
Sbjct: 206 HIVSASRDKTIKMWEVQ 222
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 27/78 (34%)
Query: 32 LAGHRDGITFID--PKGDSRHLISNSKDQTIKLWD------VRKFNG------------- 70
+ GH ++ + P GD H++S S+D+TIK+W+ V+ F G
Sbjct: 188 MHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 71 ----AANSKDQTIKLWDV 84
A+ S DQT+++W V
Sbjct: 246 GTLIASCSNDQTVRVWVV 263
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 23/79 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
L+GHR +T + ++S S+D TIK+WD R G
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 71 --AANSKDQTIKLWDVRKF 87
A+ S D TIKLWD + F
Sbjct: 164 LLASCSADMTIKLWDFQGF 182
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
VWD + + + L H +T +D + ++++ S DQT+K+W+ R
Sbjct: 364 VWDYKN-----KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 14/15 (93%)
Query: 51 LISNSKDQTIKLWDV 65
L+S S+D+TIK+WDV
Sbjct: 311 LLSGSRDKTIKMWDV 325
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---------------- 67
+T + L GH + + + + ++S + D+T+++WD +
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTS 385
Query: 68 --FNGAA-----NSKDQTIKLWDVR 85
F+ A S DQT+K+W+ R
Sbjct: 386 LDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 32/124 (25%)
Query: 1 MVTKPQVASLV-------TCFVWDRRTLNETT-AKPVGVLAGHRDGITFIDPKGDSRHLI 52
+ T PQ ++ T +W + T +ET P L GH ++ + D + +
Sbjct: 44 IATTPQFPDMILSASRDKTIIMW-KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102
Query: 53 SNSKDQTIKLWDV------RKFNG-----------------AANSKDQTIKLWDVRKFSN 89
S S D T++LWD+ R+F G + S+D+TIKLW+
Sbjct: 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 162
Query: 90 KTAQ 93
T Q
Sbjct: 163 YTVQ 166
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 32/124 (25%)
Query: 1 MVTKPQVASLV-------TCFVWDRRTLNETT-AKPVGVLAGHRDGITFIDPKGDSRHLI 52
+ T PQ ++ T +W + T +ET P L GH ++ + D + +
Sbjct: 21 IATTPQFPDMILSASRDKTIIMW-KLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 79
Query: 53 SNSKDQTIKLWDV------RKFNG-----------------AANSKDQTIKLWDVRKFSN 89
S S D T++LWD+ R+F G + S+D+TIKLW+
Sbjct: 80 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCK 139
Query: 90 KTAQ 93
T Q
Sbjct: 140 YTVQ 143
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 15 VWDRRT--LNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
VWD T L E GH+D + + D + ++S S D+++KLW+++ N +
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Query: 73 NSK 75
+SK
Sbjct: 293 DSK 295
Score = 33.9 bits (76), Expect = 0.023, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 27 KPVGVLAGHRDGITFID--PKGDSRHLISNSKDQTIKLWDVR 66
K V +L GH I +D P GD L+S S D+T+++WD+R
Sbjct: 156 KIVMILQGHEQDIYSLDYFPSGDK--LVSGSGDRTVRIWDLR 195
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 37/122 (30%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFID-PKGDSRHLISNSKDQTIKLWD------ 64
T +WD RT + + DG+T + GD +++ + S D+ +++WD
Sbjct: 188 TVRIWDLRTGQCSLTLSI------EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 65 VRKFNG------------------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAV 100
V + + + S D+++KLW+++ +NK+ +
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 101 CE 102
CE
Sbjct: 302 CE 303
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 17 DRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
D +T N T + + GH+D + + + +++S SKD+ + WD + N
Sbjct: 293 DSKTPNSGTCEVTYI--GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.3 bits (72), Expect = 0.074, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLW 82
+G L GH I ID +++ ++ S D +IKLWDV S Q + W
Sbjct: 67 LGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV--------SNGQCVATW 112
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 0.13, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR----- 66
T VWD + K + +L+GH D I + + IS S D TI++WD+
Sbjct: 291 TLIVWDVAQM-----KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345
Query: 67 -----------------KFNGAANSKDQTIKLWDVRKFSNKTAQRNT 96
KF +A + D +I+ WD +S K + +T
Sbjct: 346 YTLQGHTALVGLLRLSDKFLVSA-AADGSIRGWDANDYSRKFSYHHT 391
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAANSKDQTIKLWDVR 85
L+GH DG + L+S S D+T+++WD++K F G + T++ D+
Sbjct: 158 LSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG----HNSTVRCLDIV 212
Query: 86 KFSN 89
++ N
Sbjct: 213 EYKN 216
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 25/79 (31%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAAN--------- 73
VGVL GH + + G+ ++S S D T+ +WDV + +G +
Sbjct: 263 VGVLRGHMASVRTVSGHGNI--VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
Query: 74 --------SKDQTIKLWDV 84
S D TI++WD+
Sbjct: 321 ERKRCISASMDTTIRIWDL 339
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
VWD N+T + GH DG + ID D L + D T++ WD+R+
Sbjct: 167 VWDLH--NQTLVRQ---FQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE 214
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 31 VLAGHRDGITFID--PKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQ 77
+L GHR I + P+ D L + S D +KLWDVR+ +G + DQ
Sbjct: 181 ILQGHRQEILAVSWSPRYDYI-LATASADSRVKLWDVRRASGCLITLDQ 228
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 46 GDSRHLISNSKDQTIKL-WDVR-KFNGAANSKDQTIKLWDVRKFS 88
G H++ + + + + W R + A S D +KLWDVR+ S
Sbjct: 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
WD+ R + T + GH+ + +D + +IS S+D+TIK+W ++
Sbjct: 79 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T W ++ PV GH + D + +S S D+T++LWDV
Sbjct: 35 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 94
Query: 66 RKFNG-----------------AANSKDQTIKLWDVR 85
++F G + S+D+TIK+W ++
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
WD+ R + T + GH+ + +D + +IS S+D+TIK+W ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T W ++ PV GH + D + +S S D+T++LWDV
Sbjct: 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 66 RKFNG-----------------AANSKDQTIKLWDVR 85
++F G + S+D+TIK+W ++
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
WD+ R + T + GH+ + +D + +IS S+D+TIK+W ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T W ++ PV GH + D + +S S D+T++LWDV
Sbjct: 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 66 RKFNG-----------------AANSKDQTIKLWDVR 85
++F G + S+D+TIK+W ++
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
WD+ R + T + GH+ + +D + +IS S+D+TIK+W ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T W ++ PV GH + D + +S S D+T++LWDV
Sbjct: 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 66 RKFNG-----------------AANSKDQTIKLWDVR 85
++F G + S+D+TIK+W ++
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
WD+ R + T + GH+ + +D + +IS S+D+TIK+W ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T W ++ PV GH + D + +S S D+T++LWDV
Sbjct: 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 66 RKFNG-----------------AANSKDQTIKLWDVR 85
++F G + S+D+TIK+W ++
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
WD+ R + T + GH+ + +D + +IS S+D+TIK+W ++
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T W ++ PV GH + D + +S S D+T++LWDV
Sbjct: 41 TLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETY 100
Query: 66 RKFNG-----------------AANSKDQTIKLWDVR 85
++F G + S+D+TIK+W ++
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 21/72 (29%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWD---------------VRKFNGAANSK--- 75
GH+ + I D + LIS+S+D I++W+ V+ F +S+
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1067
Query: 76 ---DQTIKLWDV 84
D T+K+W+V
Sbjct: 1068 WSFDGTVKVWNV 1079
Score = 30.0 bits (66), Expect = 0.29, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
+WD LN+ + + GH + + D L S S D T++LWDVR N
Sbjct: 734 LWD---LNQKECR--NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 30/103 (29%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI--SNSKDQTIKLWDVR------ 66
+WD T K V H + + S HL+ + S D +KLWD+
Sbjct: 690 IWD-----SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 67 ------------KFNG-----AANSKDQTIKLWDVRKFSNKTA 92
+F+ A+ S D T++LWDVR + + +
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 787
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 21/72 (29%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWD---------------VRKFNGAANSK--- 75
GH+ + I D + LIS+S+D I++W+ V+ F +S+
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLS 1060
Query: 76 ---DQTIKLWDV 84
D T+K+W+V
Sbjct: 1061 WSFDGTVKVWNV 1072
Score = 30.0 bits (66), Expect = 0.31, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
+WD LN+ + + GH + + D L S S D T++LWDVR N
Sbjct: 727 LWD---LNQKECR--NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 30/103 (29%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI--SNSKDQTIKLWDVR------ 66
+WD T K V H + + S HL+ + S D +KLWD+
Sbjct: 683 IWD-----SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 67 ------------KFNG-----AANSKDQTIKLWDVRKFSNKTA 92
+F+ A+ S D T++LWDVR + + +
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKS 780
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 28/107 (26%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR----- 66
T VWD K + +L+GH D I + + IS S D TI++WD+
Sbjct: 291 TLIVWD-----VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELX 345
Query: 67 -----------------KFNGAANSKDQTIKLWDVRKFSNKTAQRNT 96
KF +A + D +I+ WD +S K + +T
Sbjct: 346 YTLQGHTALVGLLRLSDKFLVSA-AADGSIRGWDANDYSRKFSYHHT 391
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 11/64 (17%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAANSKDQTIKLWDVR 85
L+GH DG + L+S S D+T+++WD++K F G + T++ D+
Sbjct: 158 LSGH-DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG----HNSTVRCLDIV 212
Query: 86 KFSN 89
++ N
Sbjct: 213 EYKN 216
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 25/79 (31%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAAN--------- 73
VGVL GH + + G+ ++S S D T+ +WDV + +G +
Sbjct: 263 VGVLRGHXASVRTVSGHGNI--VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH 320
Query: 74 --------SKDQTIKLWDV 84
S D TI++WD+
Sbjct: 321 ERKRCISASXDTTIRIWDL 339
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 11 VTCFVWDRRTLNETT-------------AKPVGVLAGHRDGITFIDPKGDSRHLISNSKD 57
V C W+R L+ + +G L GH + + + D L S D
Sbjct: 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238
Query: 58 QTIKLWDVRK 67
+++WD R
Sbjct: 239 NVVQIWDARS 248
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 31/95 (32%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
VWD T N + L GH+ + ++ K + L+S + D T+K+WD++
Sbjct: 303 VWDVETGN-----CIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTL 355
Query: 67 -------------KFNG---AANSKDQTIKLWDVR 85
+FN +S D T+KLWD++
Sbjct: 356 QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 28/92 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG---- 70
VWD T ET + L GH + + + + D H++S S D +I++WDV N
Sbjct: 263 VWDPET--ETC---LHTLQGHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTL 315
Query: 71 -----------------AANSKDQTIKLWDVR 85
+ + D T+K+WD++
Sbjct: 316 TGHQSLTSGMELKDNILVSGNADSTVKIWDIK 347
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 28/91 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
VWD T + + VL GH + + + D R ++S + D +K+WD
Sbjct: 223 VWDIET-----GQCLHVLMGHVAAVRCV--QYDGRRVVSGAYDFMVKVWDPETETCLHTL 275
Query: 67 ----------KFNG---AANSKDQTIKLWDV 84
+F+G + S D +I++WDV
Sbjct: 276 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV 306
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 22 NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
N T + + L GH + + + ++S S+D T+++WD+
Sbjct: 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 34 GHRDGITFID--PKGDSRHLISNSKDQTIKLWDVR 66
G G+ ++D P D ++I+ S D TIK+WD +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
R N T + V H D I I +++S S D T+KLW+
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 34 GHRDGITFID--PKGDSRHLISNSKDQTIKLWDVR 66
G G+ ++D P D ++I+ S D TIK+WD +
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
R N T + V H D I I +++S S D T+KLW+
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2P0R|A Chain A, Structure Of Human Calpain 9 In Complex With Leupeptin
pdb|2P0R|B Chain B, Structure Of Human Calpain 9 In Complex With Leupeptin
Length = 333
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 8 ASLVTCFVWDRRTLNETTAK-PVGVLAGHRDGITFID 43
SL+ CF+ D R+ E+ A+ P G++ GH +T ID
Sbjct: 220 GSLLGCFI-DTRSAAESEARTPFGLIKGHAYSVTGID 255
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 34 GHRDGITFID--PKGDSRHLISNSKDQTIKLWD 64
G G+ ++D P D ++I+ S D TIK+WD
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
R N T + V H D I I +++S S D T+KLW+
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|1ZIV|A Chain A, Catalytic Domain Of Human Calpain-9
Length = 339
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 8 ASLVTCFVWDRRTLNETTAK-PVGVLAGHRDGITFID 43
SL+ CF+ D R+ E+ A+ P G++ GH +T ID
Sbjct: 219 GSLLGCFI-DTRSAAESEARTPFGLIKGHAYSVTGID 254
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
GH + + D+R ++S S+D+TIKLW+
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 23/75 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
L GH + + D + +S S D ++LWD+ R+F G
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 71 --AANSKDQTIKLWD 83
+ S+D+TIKLW+
Sbjct: 486 QIVSASRDRTIKLWN 500
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 16 WDR--RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
WD+ + N + K LAGH ++ + D S KD + LWD+
Sbjct: 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 30 GVLAGHRDGITFI-DPKGDSRHLISNSKDQTIKLWDVRKFNGA 71
G + H D +T I P ++ ++S S+D++I LW + K + A
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA 418
Score = 25.0 bits (53), Expect = 9.8, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 34 GHRDGITFI--DPKGDSRHLISNSKDQTIKLWDV 65
GHRD ++ + P ++S S D+T+K+W++
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 29.6 bits (65), Expect = 0.38, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 34 GHRDGITFID--PKGDSRHLISNSKDQTIKLWD 64
G G+ ++D P D ++I+ S D TIK+WD
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
R N T + V H D I I +++S S D T+KLW+
Sbjct: 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal
Subunit In Complex With Initiation Factor 1. This File
Contains The 40s Subunit And Initiation Factor For
Molecule 2
Length = 343
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 30 GVLAGHRDGITFI------DPKGDSRHLISNSKDQTIKLWDVRK 67
G+L GH D +T I DS LIS S+D+T+ +W + +
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE 58
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 28 PVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
P L GH ++ + ++ IS+S D+T++LWD+R
Sbjct: 68 PHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLR 106
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
+WD RT TT K GH+ + + D+R ++S ++ IKLW++
Sbjct: 102 LWDLRT--GTTYKR---FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 12 TCFVWDRRTLNETTAKPVGVL-AGHRDGITFID-PKGDSRHLISNSKDQTIKLWD 64
+ +WD R N P+ L GH+ GI +D D L+S+ +D T+ LW+
Sbjct: 241 SILIWDLRNAN----TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNGAANSKD 76
L GHR +T I R+++S S D TI+LW+ + FN N D
Sbjct: 177 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD 227
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 0.46, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNGAANSKD 76
L GHR +T I R+++S S D TI+LW+ + FN N D
Sbjct: 174 LIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHD 224
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.6 bits (65), Expect = 0.49, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKD 76
T P G L GH I+ ++ ++ L+S S D T+++W G NS++
Sbjct: 235 TEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH----GGNGNSQN 283
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFI--DPKGDSRHLISNSKDQTIKLWDVRK------FNG 70
R +N T + + GH + I + P+ D L+S SKD ++LW+++ F G
Sbjct: 134 RIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 71 AANSKDQTI 79
+D+ +
Sbjct: 193 VEGHRDEVL 201
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV---RKFNGA 71
+W+ +T +T G + GHRD + D ++S D ++KLW + R N
Sbjct: 178 LWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Query: 72 ANSKD 76
S D
Sbjct: 236 KESYD 240
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
C VWD A GVLAGH + ++ + D + + S D +K+W+
Sbjct: 305 CNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 28.9 bits (63), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
TC +WD T +TT H + + D+R +S + D + KLWDVR+
Sbjct: 176 TCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 230
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G A S D T +L+D+R
Sbjct: 231 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 267
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGH-RDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
TC +WD T + +GH D ++ ++ IS S D T++LWD+R
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLR 236
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
C VWD A GVLAGH + ++ + D + + S D +K+W+
Sbjct: 294 CNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
TC +WD T +TT H + + D+R +S + D + KLWDVR+
Sbjct: 165 TCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G A S D T +L+D+R
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
C VWD A GVLAGH + ++ + D + + S D +K+W+
Sbjct: 294 CNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
TC +WD T +TT H + + D+R +S + D + KLWDVR+
Sbjct: 165 TCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G A S D T +L+D+R
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
C VWD A GVLAGH + ++ + D + + S D +K+W+
Sbjct: 294 CNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
TC +WD T +TT H + + D+R +S + D + KLWDVR+
Sbjct: 165 TCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G A S D T +L+D+R
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
C VWD A GVLAGH + ++ + D + + S D +K+W+
Sbjct: 294 CNVWD-----ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
TC +WD T +TT H + + D+R +S + D + KLWDVR+
Sbjct: 165 TCALWDIETGQQTTTFTG-----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G A S D T +L+D+R
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.5 bits (62), Expect = 0.89, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 13 CFV--WDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
CF+ WD LN+ + + GH + + D + L S S D T+KLWD N
Sbjct: 729 CFLKLWD---LNQKECR--NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 38 GITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
G+ F P G S +++S DQTI+LW+ +K
Sbjct: 893 GVMF-SPDGSS--FLTSSDDQTIRLWETKK 919
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 21/71 (29%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWD---------------VRKFNGAANSK---- 75
H+ + I D + LIS+S D I++W+ V+ F NS+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSW 1067
Query: 76 --DQTIKLWDV 84
D T+K+W++
Sbjct: 1068 SFDGTVKVWNI 1078
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 51 LISNSKDQTIKLWDVRKFNGAAN 73
L + S DQT+K+WD+R+ G A+
Sbjct: 267 LATASVDQTVKIWDLRQVRGKAS 289
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 71 AANSKDQTIKLWDVRKFSNKTA------QRNTFRAVC 101
A S DQT+K+WD+R+ K + R+ A C
Sbjct: 268 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 304
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 51 LISNSKDQTIKLWDVRKFNGAAN 73
L + S DQT+K+WD+R+ G A+
Sbjct: 266 LATASVDQTVKIWDLRQVRGKAS 288
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 71 AANSKDQTIKLWDVRKFSNKTA------QRNTFRAVC 101
A S DQT+K+WD+R+ K + R+ A C
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 51 LISNSKDQTIKLWDVRKFNGAAN 73
L + S DQT+K+WD+R+ G A+
Sbjct: 266 LATASVDQTVKIWDLRQVRGKAS 288
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 71 AANSKDQTIKLWDVRKFSNKTA------QRNTFRAVC 101
A S DQT+K+WD+R+ K + R+ A C
Sbjct: 267 ATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAAC 303
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + + D + + S S D+T+KLW+ ++ G
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 317
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 318 IASASDDKTVKLWN 331
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------------VRKFNG--------- 70
L GH + + D + + S S D+T+KLW+ NG
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQT 276
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 277 IASASDDKTVKLWN 290
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + D + + S S D+T+KLW+ ++ G
Sbjct: 504 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 563
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 564 IASASSDKTVKLWN 577
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + D + + S S D+T+KLW+ ++ G
Sbjct: 94 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 153
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 154 IASASDDKTVKLWN 167
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + D + + S S D+T+KLW+ ++ G
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQT 440
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 441 IASASDDKTVKLWN 454
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + D + + S S D+T+KLW+ ++ G
Sbjct: 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 522
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 523 IASASDDKTVKLWN 536
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 28/94 (29%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VR 66
T +W+R + + L GH + + D + + S S D+T+KLW+ ++
Sbjct: 326 TVKLWNRN------GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 379
Query: 67 KFNG-----------------AANSKDQTIKLWD 83
G A+ S D+T+KLW+
Sbjct: 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN 413
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + D + + S S D+T+KLW+ ++ G
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 113 IASASDDKTVKLWN 126
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH + + D + + S S D+T+KLW+ ++ G
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 71 -AANSKDQTIKLWD 83
A+ S D+T+KLW+
Sbjct: 236 IASASDDKTVKLWN 249
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
T K + L GH I + DS+ L++ S D IK++DV+ N A
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFID--PKGDSRHLISNSKDQTIKLWDVRK------FNG 70
R +N T + + GH + I + P+ D L+S SKD ++LW+++ F G
Sbjct: 97 RIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 71 AANSKDQTI 79
+D+ +
Sbjct: 156 VEGHRDEVL 164
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV---RKFNGA 71
+W+ +T +T G + GHRD + D ++S D ++KLW + R N
Sbjct: 141 LWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Query: 72 ANSKD 76
S D
Sbjct: 199 KESYD 203
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFID--PKGDSRHLISNSKDQTIKLWDVRK------FNG 70
R +N T + + GH + I + P+ D L+S SKD ++LW+++ F G
Sbjct: 98 RIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 71 AANSKDQTI 79
+D+ +
Sbjct: 157 VEGHRDEVL 165
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV---RKFNGA 71
+W+ +T +T G + GHRD + D ++S D ++KLW + R N
Sbjct: 142 LWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Query: 72 ANSKD 76
S D
Sbjct: 200 KESYD 204
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFID--PKGDSRHLISNSKDQTIKLWDVRK------FNG 70
R +N T + + GH + I + P+ D L+S SKD ++LW+++ F G
Sbjct: 93 RIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 71 AANSKDQTI 79
+D+ +
Sbjct: 152 VEGHRDEVL 160
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV---RKFNGA 71
+W+ +T +T G + GHRD + D ++S D ++KLW + R N
Sbjct: 137 LWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Query: 72 ANSKD 76
S D
Sbjct: 195 KESYD 199
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFID--PKGDSRHLISNSKDQTIKLWDVRK------FNG 70
R +N T + + GH + I + P+ D L+S SKD ++LW+++ F G
Sbjct: 97 RIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 71 AANSKDQTI 79
+D+ +
Sbjct: 156 VEGHRDEVL 164
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV---RKFNGA 71
+W+ +T +T G + GHRD + D ++S D ++KLW + R N
Sbjct: 141 LWNIQT--DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Query: 72 ANSKD 76
S D
Sbjct: 199 KESYD 203
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
VWD T + V L GH + +T + D S+ KD +LWD+ K
Sbjct: 180 VWDL-----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
>pdb|2L3F|A Chain A, Solution Nmr Structure Of A Putative Uracil Dna
Glycosylase From Methanosarcina Acetivorans, Northeast
Structural Genomics Consortium Target Mvr76
Length = 166
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKT 91
L GH G D + + + K I LWDV K S+D I ++ FS
Sbjct: 44 LVGHAIGENLQDMAYEKK--LKTLKHNRIGLWDVFKAGSREGSQDSKIGDEEINDFSGLK 101
Query: 92 AQRNTFRAVC 101
R +C
Sbjct: 102 EMVPKLRLIC 111
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM
ITS CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM
ITS CRYSTAL Structure
Length = 354
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
L GH + + +D D R ++S+S+D + +WD
Sbjct: 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWD 92
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 48 SRHLISNSKDQTIKLWDV 65
S HL+S S D TI LWD+
Sbjct: 190 SGHLLSASDDHTICLWDI 207
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA 71
V L+GH + + D RHL S D + +W G
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 48 SRHLISNSKDQTIKLWDV 65
S HL+S S D T+ LWD+
Sbjct: 192 SGHLLSASDDHTVCLWDI 209
Score = 25.4 bits (54), Expect = 9.2, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
+WD R+ TT+KP ++ H + + S ++ A S
Sbjct: 256 IWDTRS--NTTSKPSHLVDAHTAEVNCLSFNPYSEFIL------------------ATGS 295
Query: 75 KDQTIKLWDVRKFSNKTAQRNTFR-AVCEQNWEYRRENVPRQLGT 118
D+T+ LWD+R K + + + + +W E + GT
Sbjct: 296 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 48 SRHLISNSKDQTIKLWDV 65
S HL+S S D T+ LWD+
Sbjct: 192 SGHLLSASDDHTVCLWDI 209
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
V L+GH + + D RHL S D + +W
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
V L+GH + + D RHL S D + +W
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 71 AANSKDQTIKLWDVRKFSNKTA 92
A +S D T+KLWD+R +K +
Sbjct: 220 ATSSVDATVKLWDLRNIKDKNS 241
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 71 AANSKDQTIKLWDVRKFSNKTA 92
A +S D T+KLWD+R +K +
Sbjct: 221 ATSSVDATVKLWDLRNIKDKNS 242
>pdb|2PV3|A Chain A, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
pdb|2PV3|B Chain B, Crystallographic Structure Of Sura Fragment Lacking The
Second Peptidyl-prolyl Isomerase Domain Complexed With
Peptide Nftlkfwdifrk
Length = 299
Score = 25.0 bits (53), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 24 TTAKPVGVLAGHRDGITFI-----DPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
+TAK ++ R G+ F D +G+S+++ + KD+ ++ RKF+ A S
Sbjct: 228 STAKKGDIVGPIRSGVGFHILKVNDLRGESKNISAAQKDRAYRMLMNRKFSEEAAS 283
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,492,139
Number of Sequences: 62578
Number of extensions: 124060
Number of successful extensions: 678
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 290
length of query: 118
length of database: 14,973,337
effective HSP length: 81
effective length of query: 37
effective length of database: 9,904,519
effective search space: 366467203
effective search space used: 366467203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)