BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1285
(118 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8TEB1|DCA11_HUMAN DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1
SV=1
Length = 546
Score = 108 bits (270), Expect = 9e-24, Method: Composition-based stats.
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRRT+ E KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381
Query: 73 NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
WD+R+FS++ + +A +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415
>sp|Q5E9I8|DCA11_BOVIN DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2
SV=1
Length = 546
Score = 108 bits (270), Expect = 9e-24, Method: Composition-based stats.
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRRT+ E KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381
Query: 73 NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
WD+R+FS++ + +A +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415
>sp|Q5R7H5|DCA11_PONAB DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2
SV=2
Length = 546
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/103 (50%), Positives = 67/103 (65%), Gaps = 19/103 (18%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRRT+ E KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381
Query: 73 NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
WD+R+FS++ + +A +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRQAATQQNWDYRWQQVPKK 415
>sp|Q5M9G8|DCA11_RAT DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11
PE=2 SV=1
Length = 549
Score = 107 bits (268), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/103 (50%), Positives = 66/103 (64%), Gaps = 19/103 (18%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRRT+ E KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381
Query: 73 NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQ 115
WD+R+FS++ + A +QNW+YR + VP++
Sbjct: 382 ---------WDIRRFSSREGMEASRLAATQQNWDYRWQQVPKK 415
>sp|Q91VU6|DCA11_MOUSE DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1
SV=1
Length = 549
Score = 107 bits (266), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/102 (50%), Positives = 65/102 (63%), Gaps = 19/102 (18%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRRT+ E KPVG LAGH+DGITFID KGD+R+LISNSKDQTIKL
Sbjct: 332 CKVWDRRTMREDDPKPVGALAGHQDGITFIDSKGDARYLISNSKDQTIKL---------- 381
Query: 73 NSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPR 114
WD+R+FS++ + A +QNW+YR + VP+
Sbjct: 382 ---------WDIRRFSSREGMEASRLAATQQNWDYRWQQVPK 414
>sp|Q40153|LE14B_LITER LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1
Length = 473
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/74 (55%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRR N KP G+L GH +GITFID +GD R+ ISN KDQTIKLWD+RK + A
Sbjct: 281 CKVWDRRCFN-AKGKPAGILMGHLEGITFIDSRGDGRYFISNGKDQTIKLWDIRKMSSNA 339
Query: 73 NSKDQTIKL-WDVR 85
Q+ WD R
Sbjct: 340 GGTIQSRNSEWDYR 353
>sp|P90794|DCA11_CAEEL DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis
elegans GN=wdr-23 PE=2 SV=1
Length = 571
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 19/102 (18%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
VWD+R ++ +PVGV AGHRDG+T +D + D R+L+SNSKDQTIK+
Sbjct: 338 VWDKRAWSDGDVEPVGVFAGHRDGVTHVDSRQDERYLLSNSKDQTIKV------------ 385
Query: 75 KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
WD+RKFSN + T V Q+W+YR + P L
Sbjct: 386 -------WDLRKFSNMSGVEATRACVQSQHWDYRWQPAPPGL 420
>sp|A8XEN7|DCA11_CAEBR DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis
briggsae GN=wdr-23 PE=3 SV=2
Length = 554
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 19/102 (18%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
VWD+R ++ PVGV AGHRDG+T++D + D R+L+SNSKDQTIK+
Sbjct: 317 VWDKRAWSDGDVIPVGVFAGHRDGVTYVDSRQDERYLLSNSKDQTIKV------------ 364
Query: 75 KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
WD+RKFS + T V Q+W+YR + P L
Sbjct: 365 -------WDLRKFSCQGGVEATRACVQSQHWDYRWQPAPPGL 399
>sp|O24467|LE14B_PRUAR LEC14B homolog OS=Prunus armeniaca PE=2 SV=1
Length = 475
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAA 72
C VWDRR N +P GVL GH +G+TFID +GD R+ ISN KDQT +LWD+RK + A
Sbjct: 279 CKVWDRRCFNHK-GQPAGVLMGHLEGVTFIDSRGDGRYFISNGKDQTTQLWDIRKMSSRA 337
>sp|Q3ULA2|FBW1A_MOUSE F-box/WD repeat-containing protein 1A OS=Mus musculus GN=Btrc PE=1
SV=2
Length = 605
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + V L GHR + +D D ++++S S D+TIK+W
Sbjct: 396 MVTCSKDRSIAVWDMASPTDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 451
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
+ VR NG + S D TI+LWD+
Sbjct: 452 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 493
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 28/104 (26%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR----- 66
T +WD+ TL +L GH + + + D R +I+ S D T+++WDV
Sbjct: 324 TIKIWDKSTLECKR-----ILTGHTGSVLCL--QYDERVIITGSSDSTVRVWDVNAGEML 376
Query: 67 -------------KFNGA---ANSKDQTIKLWDVRKFSNKTAQR 94
+FN SKD++I +WD+ ++ T +R
Sbjct: 377 NTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 420
>sp|Q55AR8|SNR40_DICDI U5 small nuclear ribonucleoprotein 40 kDa protein OS=Dictyostelium
discoideum GN=snrnp40 PE=3 SV=1
Length = 355
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
VWD R + P+ LA H+D IT D +L+SNS D + K+WD+R
Sbjct: 215 VWDIRNQED----PLYTLASHQDTITSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRN 270
Query: 67 --KFNGAANSKDQTI 79
FNGA N+ ++ +
Sbjct: 271 IKTFNGAQNNFEKNL 285
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 23 ETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK--------------- 67
+T +K L H+ +T + S LI+ D I++WD+R
Sbjct: 176 DTRSKGSTHLFQHKYPVTSVCFSDASDQLITGGIDNVIRVWDIRNQEDPLYTLASHQDTI 235
Query: 68 ------FNGA---ANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWE 106
+GA +NS D + K+WD+R ++ TF + N+E
Sbjct: 236 TSTSVSKDGAYLLSNSMDNSCKIWDIRPYAPPNRNIKTFNGA-QNNFE 282
>sp|Q91854|TRCB_XENLA Beta-TrCP OS=Xenopus laevis GN=fbxw1 PE=2 SV=1
Length = 518
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + V L GHR + +D D ++++S S D+TIK+W
Sbjct: 325 MVTCSKDRSIAVWDMASATDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 380
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
+ VR NG + S D TI+LWD+
Sbjct: 381 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 422
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 28/101 (27%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD+ TL VL GH + + + D R +I+ S D T+++WDV
Sbjct: 256 IWDKNTLECKR-----VLMGHTGSVLCL--QYDERVIITGSSDSTVRVWDVNTGEMLNTL 308
Query: 67 ----------KFNGAAN---SKDQTIKLWDVRKFSNKTAQR 94
+FN SKD++I +WD+ ++ T +R
Sbjct: 309 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASATDITLRR 349
>sp|Q9Y297|FBW1A_HUMAN F-box/WD repeat-containing protein 1A OS=Homo sapiens GN=BTRC PE=1
SV=1
Length = 605
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + VL GHR + +D D ++++S S D+TIK+W
Sbjct: 396 MVTCSKDRSIAVWDMASPTDITLR--RVLVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 451
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
+ VR NG + S D TI+LWD+
Sbjct: 452 NTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 493
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 28/101 (27%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD+ TL +L GH + + + D R +I+ S D T+++WDV
Sbjct: 327 IWDKNTLECKR-----ILTGHTGSVLCL--QYDERVIITGSSDSTVRVWDVNTGEMLNTL 379
Query: 67 ----------KFNGA---ANSKDQTIKLWDVRKFSNKTAQR 94
+FN SKD++I +WD+ ++ T +R
Sbjct: 380 IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 420
>sp|Q5SRY7|FBW1B_MOUSE F-box/WD repeat-containing protein 11 OS=Mus musculus GN=Fbxw11
PE=1 SV=1
Length = 542
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + V L GHR + +D D ++++S S D+TIK+W
Sbjct: 333 MVTCSKDRSIAVWDMASATDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 388
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
VR NG + S D TI+LWD+
Sbjct: 389 STSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 430
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 28/101 (27%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV--------- 65
+WD+ +L + + VL GH + + + D R +++ S D T+++WDV
Sbjct: 264 IWDKSSL-----ECLKVLTGHTGSVLCL--QYDERVIVTGSSDSTVRVWDVNTGEVLNTL 316
Query: 66 ----------RKFNG--AANSKDQTIKLWDVRKFSNKTAQR 94
R NG SKD++I +WD+ ++ T +R
Sbjct: 317 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRR 357
>sp|Q9UKB1|FBW1B_HUMAN F-box/WD repeat-containing protein 11 OS=Homo sapiens GN=FBXW11
PE=1 SV=1
Length = 542
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + V L GHR + +D D ++++S S D+TIK+W
Sbjct: 333 MVTCSKDRSIAVWDMASATDITLRRV--LVGHRAAVNVVD--FDDKYIVSASGDRTIKVW 388
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
VR NG + S D TI+LWD+
Sbjct: 389 STSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 430
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 28/101 (27%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV--------- 65
+WD+ T+ + + VL GH + + + D R +++ S D T+++WDV
Sbjct: 264 IWDK-----TSLECLKVLTGHTGSVLCL--QYDERVIVTGSSDSTVRVWDVNTGEVLNTL 316
Query: 66 ----------RKFNG--AANSKDQTIKLWDVRKFSNKTAQR 94
R NG SKD++I +WD+ ++ T +R
Sbjct: 317 IHHNEAVLHLRFSNGLMVTCSKDRSIAVWDMASATDITLRR 357
>sp|A6ZZZ8|CAF4_YEAS7 CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain
YJM789) GN=CAF4 PE=3 SV=2
Length = 645
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+WD R KPV +L GH DGIT + K DS L++ S D ++++WD+R
Sbjct: 515 LWDLRV-----GKPVRLLEGHTDGITSL--KFDSEKLVTGSMDNSVRIWDLR 559
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFID-PKGDSRHLISNSKDQTIKLWDV 65
VWD LN VG L GH + + K + LI+ SKD T+KLWD+
Sbjct: 348 VWD---LNHGIQ--VGELPGHLATVNCMQIDKKNYNMLITGSKDATLKLWDL 394
>sp|P36130|CAF4_YEAST CCR4-associated factor 4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CAF4 PE=1 SV=3
Length = 643
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 7/52 (13%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+WD R KPV +L GH DGIT + K DS L++ S D ++++WD+R
Sbjct: 513 LWDLRV-----GKPVRLLEGHTDGITSL--KFDSEKLVTGSMDNSVRIWDLR 557
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFID-PKGDSRHLISNSKDQTIKLWDV 65
VWD LN VG L GH + + K + LI+ SKD T+KLWD+
Sbjct: 346 VWD---LNHGIQ--VGELPGHLATVNCMQIDKKNYNMLITGSKDATLKLWDL 392
>sp|Q6BU94|PRP46_DEBHA Pre-mRNA-splicing factor PRP46 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PRP46 PE=3 SV=2
Length = 417
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
VWD R+ E + VL+GHR IT I + +I++S D TI+LWD+RK
Sbjct: 237 VWDLRSRTE-----IMVLSGHRSDITSIASQIGDPQIITSSMDATIRLWDIRK 284
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGA 71
T +WD + N + GH G+ + +L S S+D+T+K WD+ + N +
Sbjct: 145 TIKIWDLASSNLK-----ATITGHIMGVRSLAVSSRYPYLFSGSEDKTVKCWDLERTNSS 199
Query: 72 A 72
+
Sbjct: 200 S 200
>sp|P41318|LST8_YEAST Target of rapamycin complex subunit LST8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LST8 PE=1
SV=1
Length = 303
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 25/92 (27%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
++D RT N PV GHR +T + + D+R ++++S+D TIK+WDVR
Sbjct: 57 LYDIRTTN---PNPVASFEGHRGNVTSVSFQQDNRWMVTSSEDGTIKVWDVRSPSIPRNY 113
Query: 67 KFNGAANS--------------KDQTIKLWDV 84
K N N +D I++WD+
Sbjct: 114 KHNAPVNEVVIHPNQGELISCDRDGNIRIWDL 145
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 13 CFVWDRRTLNETT-AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
C+VW+ + + KPV H IT I D +HL + S D T ++W +
Sbjct: 183 CYVWEMPNHTDASHLKPVTKFRAHSTYITRILLSSDVKHLATCSADHTARVWSI 236
>sp|Q8W1K8|MUT11_CHLRE Protein Mut11 OS=Chlamydomonas reinhardtii GN=Mut11 PE=2 SV=1
Length = 370
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 29/98 (29%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR----- 66
T +WD T V LAGH G++ + + R+L + + D ++KLWD
Sbjct: 63 TVALWD-----AATGARVNTLAGHSCGVSDVAWNPNGRYLATAADDHSLKLWDAETGACL 117
Query: 67 -------------KFNGAA------NSKDQTIKLWDVR 85
F+GAA S D+T++LWDVR
Sbjct: 118 RTLTGHTNYVFCCNFDGAAGHLLASGSFDETLRLWDVR 155
>sp|P25382|NLE1_YEAST Ribosome assembly protein 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSA4 PE=1 SV=3
Length = 515
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 27/97 (27%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
T F+W+ L T KP+ + GH+ + + D R+++S S D +IKLWD R
Sbjct: 382 TMFLWN--PLKST--KPIARMTGHQKLVNHVAFSPDGRYIVSASFDNSIKLWDGRDGKFI 437
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G + SKD T+K+WDVR
Sbjct: 438 STFRGHVASVYQVAWSSDCRLLVSCSKDTTLKVWDVR 474
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 10 LVTCF------VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
LV+C VWD RT + P GH+D + +D D + + S KD+ ++LW
Sbjct: 459 LVSCSKDTTLKVWDVRTRKLSVDLP-----GHKDEVYTVDWSVDGKRVCSGGKDKMVRLW 513
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 32/109 (29%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------------------ 66
T P+ L GH + + + D + + S D TI+LWD +
Sbjct: 175 TQTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITS 234
Query: 67 -------------KFNGAANSKDQTIKLWD-VRKFSNKTAQRNTFRAVC 101
K A++SKD TIK+WD V + T +T C
Sbjct: 235 LSWEPIHLVKPGSKPRLASSSKDGTIKIWDTVSRVCQYTMSGHTNSVSC 283
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus
GN=Taf5 PE=2 SV=1
Length = 801
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQT 78
R ++E TA + +L GH + D +L+S+S+D T++LW ++ F K
Sbjct: 527 RIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHN 586
Query: 79 IKLWDVR 85
+WD +
Sbjct: 587 YPVWDTQ 593
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
VG L GH D + + D L S S D T++LWD K
Sbjct: 705 VGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVK 743
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG---------- 70
+P+ + AGH + +S ++ + S D+T++LWD VR F G
Sbjct: 619 QPLRIFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 678
Query: 71 -------AANSKDQTIKLWDV 84
A + D + LWD+
Sbjct: 679 SPNGRFLATGATDGRVLLWDI 699
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens
GN=TAF5 PE=1 SV=3
Length = 800
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQT 78
R ++E TA + +L GH + D +L+S+S+D T++LW ++ F K
Sbjct: 526 RIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHN 585
Query: 79 IKLWDVR 85
+WD +
Sbjct: 586 YPVWDTQ 592
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
VG L GH D + + D L S S D T++LWD K
Sbjct: 704 VGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAIK 742
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG---------- 70
+P+ + AGH + +S ++ + S D+T++LWD VR F G
Sbjct: 618 QPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTF 677
Query: 71 -------AANSKDQTIKLWDV 84
A + D + LWD+
Sbjct: 678 SPNGRFLATGATDGRVLLWDI 698
>sp|Q09990|LIN23_CAEEL F-box/WD repeat-containing protein lin-23 OS=Caenorhabditis elegans
GN=lin-23 PE=1 SV=2
Length = 665
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 31/102 (30%)
Query: 10 LVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+VTC VWD + + T + V L GHR + +D D R+++S S D+TIK+W
Sbjct: 315 MVTCSKDRSIAVWDMVSPRDITIRRV--LVGHRAAVNVVD--FDDRYIVSASGDRTIKVW 370
Query: 64 D------VRKFNG---------------AANSKDQTIKLWDV 84
VR G + S D TI+LWD+
Sbjct: 371 SMDTLEFVRTLAGHRRGIACLQYRGRLVVSGSSDNTIRLWDI 412
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 28/104 (26%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------ 65
T +WDR+ + + +L+GH + + + D+R +IS S D T+++WDV
Sbjct: 243 TIKIWDRKDYSCSR-----ILSGHTGSVLCL--QYDNRVIISGSSDATVRVWDVETGECI 295
Query: 66 -------------RKFNG--AANSKDQTIKLWDVRKFSNKTAQR 94
R NG SKD++I +WD+ + T +R
Sbjct: 296 KTLIHHCEAVLHLRFANGIMVTCSKDRSIAVWDMVSPRDITIRR 339
>sp|Q8SQS4|TAF5_ENCCU Transcription initiation factor TFIID subunit 5 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=TAF5 PE=1 SV=1
Length = 556
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 23/88 (26%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------KFNGAA 72
R + +TA V + GH D +T +D + L S SKD+T+ LWD++ K+ G
Sbjct: 431 RMHDISTASVVRIFCGHTDTVTCMDVSHCGKFLASGSKDRTVLLWDIQSSKLLGKYVGHE 490
Query: 73 NS-----------------KDQTIKLWD 83
N+ D +++LWD
Sbjct: 491 NTVFSVSFCFYGSVLASCGADNSVRLWD 518
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 23/84 (27%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG-------- 70
T+KP ++ +T + +S +L + S D +++ D VR F G
Sbjct: 395 TSKPERLIISSLSDVTAVKFHPNSSYLFTGSSDHRVRMHDISTASVVRIFCGHTDTVTCM 454
Query: 71 ---------AANSKDQTIKLWDVR 85
A+ SKD+T+ LWD++
Sbjct: 455 DVSHCGKFLASGSKDRTVLLWDIQ 478
>sp|P74442|Y143_SYNY3 Uncharacterized WD repeat-containing protein slr0143
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0143 PE=4 SV=1
Length = 1191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 22/76 (28%)
Query: 31 VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG--------------- 70
VL GHRDG+T + + S S+D T+ LW +R+F G
Sbjct: 555 VLTGHRDGVTSVAISSHKNLIASASRDGTVHLWTPQGEFLREFTGHTGSIYRVDFSPNGK 614
Query: 71 --AANSKDQTIKLWDV 84
A +DQT+K+WD+
Sbjct: 615 IFATAGQDQTVKIWDL 630
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
L GH+D + + D L S S+D+T++LW R
Sbjct: 638 LKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWR 672
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 22/80 (27%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKF----------- 68
+ K + VL GH + D + L+S +D I+LWD +R+F
Sbjct: 673 SGKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLDGNLIRQFGLPEVAFFGVN 732
Query: 69 ---NG---AANSKDQTIKLW 82
NG A + D T++LW
Sbjct: 733 WHPNGNLLAVAADDGTVRLW 752
>sp|A7S338|LIS1_NEMVE Lissencephaly-1 homolog OS=Nematostella vectensis GN=v1g242515 PE=3
SV=1
Length = 409
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 27/99 (27%)
Query: 32 LAGHRDGITFID--PKGDSRHLISNSKDQTIKLWD------VRKFNG------------- 70
L GH ++ I P GD HL+S S+D+TIK+W+ V+ F G
Sbjct: 186 LHGHDHNVSSISFLPSGD--HLVSASRDKTIKMWEIATGYCVKTFQGHGEWVRRVRPNAD 243
Query: 71 ----AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW 105
A+ S DQTI++W V K R+ + + NW
Sbjct: 244 GSLIASCSNDQTIRVWVVASRECKCDLRDHDHVIEDLNW 282
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 33/108 (30%)
Query: 1 MVTKPQVASLVTCFVWDRRTLN-ETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT 59
MVT + A T VWD T + E T L GH D + + + L S+S D T
Sbjct: 121 MVTSSEDA---TVKVWDYETGDFERT------LKGHTDAVQDLAFDHTGKFLASSSADMT 171
Query: 60 IKLWD------VRKFNG-----------------AANSKDQTIKLWDV 84
IKLWD +R +G + S+D+TIK+W++
Sbjct: 172 IKLWDFQGFECIRTLHGHDHNVSSISFLPSGDHLVSASRDKTIKMWEI 219
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 23/79 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG--------------- 70
L GHR IT + ++++S+D T+K+WD R G
Sbjct: 102 LTGHRSPITKVLFHPVYSVMVTSSEDATVKVWDYETGDFERTLKGHTDAVQDLAFDHTGK 161
Query: 71 --AANSKDQTIKLWDVRKF 87
A++S D TIKLWD + F
Sbjct: 162 FLASSSADMTIKLWDFQGF 180
>sp|Q8JZX3|POC1A_MOUSE POC1 centriolar protein homolog A OS=Mus musculus GN=Poc1a PE=2
SV=2
Length = 405
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 27/89 (30%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------KFNG----------------- 70
GHRD +T +D +++HL S S D T+ +W ++ +F G
Sbjct: 17 GHRDAVTCVDFSLNTKHLASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLL 76
Query: 71 AANSKDQTIKLWDVRKFSNKTAQRNTFRA 99
A+ S+D+T+++W N + FRA
Sbjct: 77 ASGSRDKTVRIW----VPNVKGESTVFRA 101
>sp|Q6PH57|GBB1_DANRE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Danio rerio GN=gnb1 PE=2 SV=1
Length = 340
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 28/97 (28%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---- 67
TC +WD T +TT AGH + + D+R +S + D + KLWDVR+
Sbjct: 165 TCALWDIETGQQTT-----TFAGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR 219
Query: 68 --FNG-----------------AANSKDQTIKLWDVR 85
F G A S D T +L+D+R
Sbjct: 220 QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
>sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1
Length = 361
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------------------KFNGAAN 73
++GH+ GI+ + DSR L+S S D+T+K+W++ FN +N
Sbjct: 110 ISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSN 169
Query: 74 -----SKDQTIKLWDVR 85
S D+++++WDVR
Sbjct: 170 LIVSGSFDESVRIWDVR 186
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+T K + L GH + + + S ++S S D+++++WDVR
Sbjct: 144 STGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVR 186
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR-------- 66
+WD RT K + L H D ++ + D ++S+S D ++WD
Sbjct: 182 IWDVRT-----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 236
Query: 67 -----------KF--NGA---ANSKDQTIKLWDVRK 86
KF NG A + D T+KLWD K
Sbjct: 237 IDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 272
>sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa protein OS=Pongo abelii
GN=SNRNP40 PE=2 SV=1
Length = 357
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF 68
VWD R N+ T + GH D +T + + +L+SN+ D T+++WDVR F
Sbjct: 219 VWDLRQ-NKLTY----TMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPF 267
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG--------------- 70
L G+ + + D L S S D+T+ +WD V++ G
Sbjct: 105 LKGYSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 164
Query: 71 ---AANSKDQTIKLWDVRKFSNKTAQRNTFRAV 100
S D T+KLWD+RK + +NT++ +
Sbjct: 165 QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVL 197
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 26/75 (34%)
Query: 39 ITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAA-----------------NSK 75
+TF D S +IS D IK+WD+R+ G A N+
Sbjct: 199 VTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAM 255
Query: 76 DQTIKLWDVRKFSNK 90
D T+++WDVR F+ K
Sbjct: 256 DNTVRVWDVRPFAPK 270
>sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Bos taurus
GN=SNRNP40 PE=2 SV=1
Length = 358
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF 68
VWD R N+ T + GH D +T + + +L+SN+ D T+++WDVR F
Sbjct: 220 VWDLRQ-NKLTY----TMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPF 268
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG--------------- 70
L GH + + D L S S D+T+ +WD V++ G
Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 165
Query: 71 ---AANSKDQTIKLWDVRKFSNKTAQRNTFRAV 100
S D T+KLWD+RK + +NT++ +
Sbjct: 166 QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVL 198
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 38 GITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAA-----------------NS 74
+TF D S +IS D IK+WD+R+ G A N+
Sbjct: 199 AVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNA 255
Query: 75 KDQTIKLWDVRKFSNK 90
D T+++WDVR F+ K
Sbjct: 256 MDNTVRVWDVRPFAPK 271
>sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa protein OS=Homo sapiens
GN=SNRNP40 PE=1 SV=1
Length = 357
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF 68
VWD R N+ T + GH D +T + + +L+SN+ D T+++WDVR F
Sbjct: 219 VWDLRQ-NKLTY----TMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPF 267
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG--------------- 70
L GH + + D L S S D+T+ +WD V++ G
Sbjct: 105 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 164
Query: 71 ---AANSKDQTIKLWDVRKFSNKTAQRNTFRAV 100
S D T+KLWD+RK + +NT++ +
Sbjct: 165 QLVCTGSDDGTVKLWDIRKKAAIQTFQNTYQVL 197
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 26/75 (34%)
Query: 39 ITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAA-----------------NSK 75
+TF D S +IS D IK+WD+R+ G A N+
Sbjct: 199 VTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAM 255
Query: 76 DQTIKLWDVRKFSNK 90
D T+++WDVR F+ K
Sbjct: 256 DNTVRVWDVRPFAPK 270
>sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus
GN=Snrnp40 PE=2 SV=1
Length = 358
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF 68
VWD R N+ T + GH D +T + + +L+SN+ D T+++WDVR F
Sbjct: 220 VWDLRQ-NKLTY----TMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDVRPF 268
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 24/93 (25%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG--------------- 70
L GH + + D L S S D+T+ +WD V++ G
Sbjct: 106 LKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGP 165
Query: 71 ---AANSKDQTIKLWDVRKFSNKTAQRNTFRAV 100
S D T+KLWD+RK + +NT++ +
Sbjct: 166 QLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVL 198
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 26/76 (34%)
Query: 38 GITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNGAA-----------------NS 74
+TF D S +IS D IK+WD+R+ G A N+
Sbjct: 199 AVTFND---TSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNA 255
Query: 75 KDQTIKLWDVRKFSNK 90
D T+++WDVR F+ K
Sbjct: 256 MDNTVRVWDVRPFAPK 271
>sp|Q19124|A16L1_CAEEL Autophagic-related protein 16.1 OS=Caenorhabditis elegans
GN=atg-16.1 PE=3 SV=1
Length = 578
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 25/93 (26%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV----------------------R 66
+G LAG T ID + D +H I++S D+ +++W++ +
Sbjct: 329 IGTLAGSNAAFTRIDYERDRKHFIASSNDKNVRIWNLDNSRLLSTLSGHSDQVTCVKFYQ 388
Query: 67 KFNGAANSKDQTIKLWDVRKFSNKTAQRNTFRA 99
+ + S D+ IK+WD++ N+ R+ F A
Sbjct: 389 SHSAVSGSADRVIKIWDIQ---NQRCSRSLFPA 418
>sp|Q6FT96|MDV1_CANGA Mitochondrial division protein 1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=MDV1 PE=3 SV=1
Length = 711
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
+WD RT + V VL GH D IT + K D+ +IS S D TI+LWD+R N
Sbjct: 588 LWDMRT-----GEVVRVLEGHMDAITSL--KFDATTIISGSLDGTIRLWDLRSNN 635
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 23/83 (27%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG-------- 70
T K + GH + + D + L S S DQT++LWD+ + F G
Sbjct: 895 TGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSV 954
Query: 71 ---------AANSKDQTIKLWDV 84
A+ S DQT++LWD+
Sbjct: 955 VFSPNSLMLASGSSDQTVRLWDI 977
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 23/85 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNG------- 70
++ K + L GH + + I D L S S DQT++LW++ +G
Sbjct: 1398 SSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRS 1457
Query: 71 ----------AANSKDQTIKLWDVR 85
A+ S D+TIKLWDV+
Sbjct: 1458 VAFSSDGLILASGSDDETIKLWDVK 1482
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 23/84 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNG------- 70
+++K + +L GH + + D L S S DQT++LW++ F G
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNS 1247
Query: 71 ----------AANSKDQTIKLWDV 84
A+ S D+T++LWD+
Sbjct: 1248 VVFNPDGSMLASGSSDKTVRLWDI 1271
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 23/84 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---------------- 67
++ K + L GH + + + D L S S DQT++LWD+
Sbjct: 1146 SSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNS 1205
Query: 68 --FNG-----AANSKDQTIKLWDV 84
FN A+ S DQT++LW++
Sbjct: 1206 VVFNPDGSTLASGSSDQTVRLWEI 1229
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 23/84 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNG------- 70
++ + + + GH + + D L + S DQT++LWD+ F G
Sbjct: 978 SSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRS 1037
Query: 71 ----------AANSKDQTIKLWDV 84
A+ S DQT++LWD+
Sbjct: 1038 VVFSSDGAMLASGSDDQTVRLWDI 1061
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 23/84 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG------- 70
+++K + GH + + + D L S S DQT++LW++ F G
Sbjct: 1272 SSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSS 1331
Query: 71 ----------AANSKDQTIKLWDV 84
A+ S DQT++LW +
Sbjct: 1332 VTFSPDGTMLASGSDDQTVRLWSI 1355
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
R N ++ + + L GH + + + D L S S D+TIKLWDV+
Sbjct: 1435 RLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLWDVK 1482
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 23/77 (29%)
Query: 31 VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------------- 70
+ GH + + D L S S DQT++LWD+ N
Sbjct: 1027 IFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDG 1086
Query: 71 ---AANSKDQTIKLWDV 84
A+ DQ ++LWD+
Sbjct: 1087 AMLASGGDDQIVRLWDI 1103
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 23/84 (27%)
Query: 24 TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------FNG------- 70
+++K + GH ++ + D L S S DQT++LW + F G
Sbjct: 1314 SSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGS 1373
Query: 71 ----------AANSKDQTIKLWDV 84
A+ S DQT++LW +
Sbjct: 1374 VIFSPDGAILASGSGDQTVRLWSI 1397
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 23/76 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------------- 70
L GH + + D L S DQ ++LWD+ N
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV 1129
Query: 71 --AANSKDQTIKLWDV 84
A S DQ ++LWD+
Sbjct: 1130 TLANGSSDQIVRLWDI 1145
>sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY
PE=1 SV=1
Length = 647
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 30/118 (25%)
Query: 12 TCFVWD-RRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR---- 66
T VWD + ++E++ L GH + +D L+S KDQ +KLWD R
Sbjct: 230 TVKVWDFTKCVDESS------LTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRE 283
Query: 67 --------------KFNGAAN-----SKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNW 105
K+N N SKDQ IKL+D+R + R + V W
Sbjct: 284 LCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAW 341
>sp|Q4ICM0|LIS1_GIBZE Nuclear distribution protein PAC1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PAC1 PE=3
SV=2
Length = 460
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG 70
VT +WD TT V + GH D I + P D ++L+S D+T++LWD+ N
Sbjct: 231 VTVRIWDV-----TTGYCVKTIRGHADWIRDVSPSLDGKYLLSTGNDRTVRLWDISVPNP 285
Query: 71 AA 72
A
Sbjct: 286 EA 287
>sp|C7Z6H2|LIS1_NECH7 Nuclear distribution protein PAC1 OS=Nectria haematococca (strain
77-13-4 / ATCC MYA-4622 / FGSC 9596 / MPVI) GN=PAC1 PE=3
SV=1
Length = 448
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
VT +WD TT + + GH D I + P D ++L+S D+T++LWD+
Sbjct: 221 VTVRIWD-----VTTGYCLKTIRGHSDWIRDVSPSLDGKYLLSTGNDRTLRLWDI 270
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 29/109 (26%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------KFNG-- 70
R + AK + L GH+ I+ +D +L S S D IKLWDVR ++ G
Sbjct: 88 RLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHT 147
Query: 71 ---------------AANSKDQTIKLWD------VRKFSNKTAQRNTFR 98
A+ S D T+KLWD + +F++ T+ N +
Sbjct: 148 QAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQ 196
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 23/78 (29%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG----------------- 70
GH + + D + L S S D T+KLWD + +F
Sbjct: 145 GHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLL 204
Query: 71 AANSKDQTIKLWDVRKFS 88
A+ S D+T+KLWD+ KF+
Sbjct: 205 ASGSADRTVKLWDLEKFN 222
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 16 WDRRTLNETTAKPVGVLAG--------HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
W +++T K ++AG H + + + L S S D+T+KLWD+ K
Sbjct: 161 WLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEK 220
Query: 68 FNGAANSKDQT 78
FN +S+ +T
Sbjct: 221 FNMIGSSEGET 231
>sp|P54313|GBB2_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Rattus norvegicus GN=Gnb2 PE=1 SV=4
Length = 340
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
TC +WD T +T AGH + + D R +S + D +IKLWDVR
Sbjct: 165 TCALWDIETGQQTVG-----FAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVR 214
>sp|P62880|GBB2_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Mus musculus GN=Gnb2 PE=1 SV=3
Length = 340
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
TC +WD T +T AGH + + D R +S + D +IKLWDVR
Sbjct: 165 TCALWDIETGQQTVG-----FAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVR 214
>sp|P62879|GBB2_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Homo sapiens GN=GNB2 PE=1 SV=3
Length = 340
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
TC +WD T +T AGH + + D R +S + D +IKLWDVR
Sbjct: 165 TCALWDIETGQQTVG-----FAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVR 214
>sp|P11017|GBB2_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2
OS=Bos taurus GN=GNB2 PE=2 SV=3
Length = 340
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
TC +WD T +T AGH + + D R +S + D +IKLWDVR
Sbjct: 165 TCALWDIETGQQTVG-----FAGHSGDVMSLSLAPDGRTFVSGACDASIKLWDVR 214
>sp|Q5GIS3|GBB_PINFU Guanine nucleotide-binding protein subunit beta OS=Pinctada fucata
PE=1 SV=1
Length = 341
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 28/98 (28%)
Query: 11 VTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK--- 67
++C +WD T +TTA GH + + D R +S + D + KLWD+R
Sbjct: 165 MSCALWDIETGQQTTA-----FTGHTGDVMSLSLSPDMRTFVSGACDASAKLWDIRDGMC 219
Query: 68 ---FNG-----------------AANSKDQTIKLWDVR 85
F+G A S D T +L+D+R
Sbjct: 220 KQTFSGHESDINAITYFPNGYAFATGSDDATCRLFDIR 257
>sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sapiens GN=WDR5B PE=2 SV=1
Length = 330
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 23/77 (29%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNGAAN 73
L GH I+ + DS L+S S D+T+KLWDVR FN +N
Sbjct: 79 LYGHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSN 138
Query: 74 -----SKDQTIKLWDVR 85
S D+T+K+W+V+
Sbjct: 139 LIISGSFDETVKIWEVK 155
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+WD R+ K + L GH + + + S +IS S D+T+K+W+V+
Sbjct: 109 LWDVRS-----GKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVK 155
>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1
Length = 1683
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 22/73 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD-----VRKFNG---------------- 70
L GH+DG+ I D + + S S D+TIKLW R NG
Sbjct: 1068 LEGHKDGVISISISRDGQTIASGSLDKTIKLWSRDGRLFRTLNGHEDAVYSVSFSPDGQT 1127
Query: 71 -AANSKDQTIKLW 82
A+ D+TIKLW
Sbjct: 1128 IASGGSDKTIKLW 1140
Score = 35.8 bits (81), Expect = 0.077, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 23/81 (28%)
Query: 26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR--KFNG------------- 70
K + L GH + + ++ D + L S S+D T+KLW+V KF
Sbjct: 1436 GKALKTLIGHDNEVNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVS 1495
Query: 71 --------AANSKDQTIKLWD 83
A+ S D+TI+LWD
Sbjct: 1496 FSPDGKIIASASADKTIRLWD 1516
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 22/79 (27%)
Query: 26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW-----DVRKFNG---------- 70
K V L GH D + ++ D + + S S+D TIKLW ++ F G
Sbjct: 1271 GKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNF 1330
Query: 71 -------AANSKDQTIKLW 82
A+ S D TI+LW
Sbjct: 1331 LPDSNIIASASLDNTIRLW 1349
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------V 65
T +W R+ K + L GH+D + + D + L S S D+TIKLW V
Sbjct: 1220 TVKLWHRQD-----GKLLKTLNGHQDWVNSLSFSPDGKTLASASADKTIKLWRIADGKLV 1274
Query: 66 RKFNG-----------------AANSKDQTIKLWD 83
+ G A+ S+D TIKLW+
Sbjct: 1275 KTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWN 1309
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 28/93 (30%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKF 68
+WD T+ + + L GH G+ + D + + + S+D+T+KLW ++
Sbjct: 1181 LWD-----TTSGQLLMTLTGHSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQDGKLLKTL 1235
Query: 69 NG-----------------AANSKDQTIKLWDV 84
NG A+ S D+TIKLW +
Sbjct: 1236 NGHQDWVNSLSFSPDGKTLASASADKTIKLWRI 1268
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 27/86 (31%)
Query: 22 NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----------- 70
N + K L GH D + ++ D + + S S D+TI+LWD F+G
Sbjct: 1474 NVSDGKFKKTLKGHTDEVFWVSFSPDGKIIASASADKTIRLWD--SFSGNLIKSLPAHND 1531
Query: 71 --------------AANSKDQTIKLW 82
A+ S D+T+KLW
Sbjct: 1532 LVYSVNFNPDGSMLASTSADKTVKLW 1557
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------------------KFNG--- 70
+ GH + + D ++L S S D +IKLWD +F+
Sbjct: 1151 ITGHEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQ 1210
Query: 71 --AANSKDQTIKLW 82
AA S+D+T+KLW
Sbjct: 1211 TIAAGSEDKTVKLW 1224
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 28/96 (29%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------V 65
T +WD + N + P H D + ++ D L S S D+T+KLW +
Sbjct: 1511 TIRLWDSFSGNLIKSLP-----AHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLL 1565
Query: 66 RKFNGAAN-----------------SKDQTIKLWDV 84
F+G +N S+D+T+K+W +
Sbjct: 1566 HTFSGHSNVVYSSSFSPDGRYIASASEDKTVKIWQI 1601
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 23/87 (26%)
Query: 22 NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNGAAN-- 73
N T + + GH + + I DS+ L+S S D+TIKLWD ++ +G N
Sbjct: 838 NYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEV 897
Query: 74 ---------------SKDQTIKLWDVR 85
S DQ+++LW+ R
Sbjct: 898 CSVAFSPDGQTLACVSLDQSVRLWNCR 924
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 23/81 (28%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV------RKFNG------------ 70
+ L GH + + D L S S D+TIKLWD+ + G
Sbjct: 719 IKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSP 778
Query: 71 -----AANSKDQTIKLWDVRK 86
A+++ D TIKLWDV +
Sbjct: 779 DGNTLASSAADHTIKLWDVSQ 799
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 27/85 (31%)
Query: 25 TAKPVGVLAGHRDGI--TFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG------ 70
T + VG+L GH + + P G+ + + S DQT+K+WD ++ G
Sbjct: 1093 TGRCVGILRGHSNRVYSAIFSPNGEI--IATCSTDQTVKIWDWQQGKCLKTLTGHTNWVF 1150
Query: 71 -----------AANSKDQTIKLWDV 84
A+ S DQT+++WDV
Sbjct: 1151 DIAFSPDGKILASASHDQTVRIWDV 1175
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 23/85 (27%)
Query: 22 NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNGAAN-- 73
N +T + + L+ H D I + D + L S S DQ+++LWD V G +N
Sbjct: 1048 NISTGQCLKTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRV 1107
Query: 74 ---------------SKDQTIKLWD 83
S DQT+K+WD
Sbjct: 1108 YSAIFSPNGEIIATCSTDQTVKIWD 1132
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 23/83 (27%)
Query: 26 AKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG--------------- 70
K + L GH + + I D + L S S DQT+++WDV
Sbjct: 1136 GKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVA 1195
Query: 71 --------AANSKDQTIKLWDVR 85
A+ S+DQT+++W+V+
Sbjct: 1196 FSPDGEVVASGSQDQTVRIWNVK 1218
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 23/75 (30%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK------------------FNG--- 70
L GH D + + D L S++ D TIKLWDV + F+
Sbjct: 764 LTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQ 823
Query: 71 --AANSKDQTIKLWD 83
A+ S D+TIK+W+
Sbjct: 824 TLASGSGDRTIKIWN 838
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 34/111 (30%)
Query: 4 KPQVASLVTC------FVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKD 57
P+ L TC VW+ ++ K + + GH + + F+ D L S D
Sbjct: 651 SPEGQLLATCDTDCHVRVWEVKS-----GKLLLICRGHSNWVRFVVFSPDGEILASCGAD 705
Query: 58 QTIKLWDVR------KFNG-----------------AANSKDQTIKLWDVR 85
+ +KLW VR G A+ S D+TIKLWD++
Sbjct: 706 ENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQ 756
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 23/83 (27%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------------- 70
T K + L GH D I I DS+ L S S D +++LW++
Sbjct: 967 TGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAV 1026
Query: 71 ---------AANSKDQTIKLWDV 84
A S D T+KLW++
Sbjct: 1027 VFHPQGKIIATGSADCTVKLWNI 1049
>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b
PE=2 SV=1
Length = 470
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 23/72 (31%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR------KFNG----------------- 70
GH+D +T++D D + L S+S D + +W+ + K+ G
Sbjct: 16 GHKDAVTYVDFSPDGKQLASSSADACVMIWNFKPQSRAYKYPGHKEAVTCVQFSPSGHLV 75
Query: 71 AANSKDQTIKLW 82
A++SKD+T++LW
Sbjct: 76 ASSSKDRTVRLW 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,532,347
Number of Sequences: 539616
Number of extensions: 1486648
Number of successful extensions: 8999
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 328
Number of HSP's that attempted gapping in prelim test: 5041
Number of HSP's gapped (non-prelim): 3704
length of query: 118
length of database: 191,569,459
effective HSP length: 85
effective length of query: 33
effective length of database: 145,702,099
effective search space: 4808169267
effective search space used: 4808169267
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)