RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1285
(118 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 45.5 bits (106), Expect = 2e-07
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
C VWD A GVLAGH + ++ + D + + S D +K+W+
Sbjct: 293 NCNVWDALK-----ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 35.9 bits (81), Expect = 4e-04
Identities = 18/102 (17%), Positives = 26/102 (25%), Gaps = 30/102 (29%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG- 70
+ +WD R GH I I + + S D T +L+D+R
Sbjct: 207 SAKLWDVRE-----GMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL 261
Query: 71 ------------------------AANSKDQTIKLWDVRKFS 88
A D +WD K
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 34.7 bits (78), Expect = 0.001
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 23/72 (31%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------A 71
GIT + R L++ D +WD K + A
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 72 ANSKDQTIKLWD 83
S D +K+W+
Sbjct: 329 TGSWDSFLKIWN 340
Score = 32.4 bits (72), Expect = 0.009
Identities = 14/67 (20%), Positives = 24/67 (35%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQT 78
+ + L GH I + DSR L+S S+D + +WD N ++
Sbjct: 38 DPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRS 97
Query: 79 IKLWDVR 85
+
Sbjct: 98 SWVMTCA 104
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 43.6 bits (101), Expect = 1e-06
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKG------DSRHLISNSKDQTIKLWDV 65
WD+++ P+ +L GHR+ + + + + S D ++W
Sbjct: 331 GVLFWDKKS-----GNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Query: 66 RK 67
+K
Sbjct: 386 KK 387
Score = 35.5 bits (80), Expect = 6e-04
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 29/81 (35%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG------------------ 70
H+D + + + +++S SKD+ + WD + G
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366
Query: 71 -----AANSKDQTIKLWDVRK 86
A S D ++W +K
Sbjct: 367 EYNVFATGSGDCKARIWKYKK 387
Score = 34.4 bits (77), Expect = 0.002
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 37/114 (32%)
Query: 12 TCFVWDRRT--LNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
VWD T L E GH+D + + D + ++S S D+++KLW+++ N
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 70 G-----------------------------------AANSKDQTIKLWDVRKFS 88
+ SKD+ + WD + +
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 42.4 bits (98), Expect = 2e-06
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 28/95 (29%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD------V 65
T +WD T + L GH + + + + ++S + D+T+++WD +
Sbjct: 228 TIKMWDVST-----GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 282
Query: 66 RKFNG-----------------AANSKDQTIKLWD 83
+ N S DQT+K+W+
Sbjct: 283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 41.3 bits (95), Expect = 6e-06
Identities = 18/92 (19%), Positives = 36/92 (39%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDV 84
L+GHR +T + ++S S+D TIK+WD + K T + D+
Sbjct: 6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 85 RKFSNKTAQRNTFRAVCEQNWEYRRENVPRQL 116
+ + + + W+++ R +
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTM 97
Score = 28.6 bits (62), Expect = 0.15
Identities = 16/84 (19%), Positives = 30/84 (35%)
Query: 25 TAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDV 84
T V GHR+ + + P D + S S DQT+++W V A ++ + +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 85 RKFSNKTAQRNTFRAVCEQNWEYR 108
+ + E +
Sbjct: 192 SWAPESSYSSISEATGSETKKSGK 215
Score = 27.8 bits (60), Expect = 0.31
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 23/76 (30%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWD------VRKFNG----------------- 70
G L+S S+D+TIK+WD + G
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262
Query: 71 AANSKDQTIKLWDVRK 86
+ + D+T+++WD +
Sbjct: 263 LSCADDKTLRVWDYKN 278
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 41.0 bits (94), Expect = 7e-06
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
+ V + +D I+ I L+ S D ++ ++
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDI 42
Score = 27.1 bits (58), Expect = 0.48
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
+ I+ + L + D I W+++
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 41.0 bits (94), Expect = 8e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 12 TCFVWDRRTLNE----TTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
VWD + + L H + + D ++S+S D TI +WD
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 35.6 bits (80), Expect = 6e-04
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
+ + + G+ + D + ++S +D TIK+WD
Sbjct: 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE 46
Score = 30.2 bits (66), Expect = 0.040
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 28/107 (26%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG- 70
T VW+ T + V L GH+ GI + R ++S S D TI+LWD+
Sbjct: 159 TIKVWNTST-----CEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 211
Query: 71 --------------------AANSKDQTIKLWDVRKFSNKTAQRNTF 97
+ + D IK+WD+ + A T
Sbjct: 212 RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Score = 25.2 bits (53), Expect = 2.6
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 21/84 (25%)
Query: 47 DSRHLISNSKDQTIKLWDVRKFN---------------------GAANSKDQTIKLWDVR 85
D ++++S S D+TIK+W+ + S D TI+LWD+
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206
Query: 86 KFSNKTAQRNTFRAVCEQNWEYRR 109
+ V ++ +R
Sbjct: 207 CGACLRVLEGHEELVRCIRFDNKR 230
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 39.8 bits (91), Expect = 2e-05
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 8/93 (8%)
Query: 16 WDRRTLNETTAKPVGVLAGHRDGI-TFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANS 74
W R L K VL GH D + T + ++S S D T+K+W
Sbjct: 1 WRRGEL-----KSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTL 53
Query: 75 KDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY 107
T +W + N +T R + N E
Sbjct: 54 VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 86
Score = 31.3 bits (69), Expect = 0.019
Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 23/116 (19%)
Query: 19 RTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-------- 70
+ + T + L GH + + + D H++S S D +I++WDV N
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217
Query: 71 -------------AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEYRRENVP 113
+ + D T+K+WD++ + + +N
Sbjct: 218 SLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV 273
Score = 30.9 bits (68), Expect = 0.029
Identities = 9/57 (15%), Positives = 16/57 (28%), Gaps = 4/57 (7%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT----IKLWD 64
T +WD +T G + I S++ T + + D
Sbjct: 281 TVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
Score = 29.0 bits (63), Expect = 0.13
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 31/98 (31%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG- 70
+ VWD T + L GH+ + ++ K + L+S + D T+K+WD++
Sbjct: 198 SIRVWDVET-----GNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCL 250
Query: 71 -----------------------AANSKDQTIKLWDVR 85
+S D T+KLWD++
Sbjct: 251 QTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 39.6 bits (90), Expect = 3e-05
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 31 VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
V GH IT + D + L S + I WD+
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 43
Score = 36.1 bits (81), Expect = 4e-04
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
+ VW+ ++ P+ + H + ++S +D IK W+V
Sbjct: 247 SVIVWNMNKPSD---HPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 28.4 bits (61), Expect = 0.17
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 25/60 (41%)
Query: 50 HLISNSKDQTIKLWDVRKFNG-------------------------AANSKDQTIKLWDV 84
L + S D ++ +W++ K + + +D IK W+V
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 23.4 bits (48), Expect = 9.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 63 WDVRKFNGAANSKDQTIKLWDVRKFSNK 90
W A S D ++ +W++ K S+
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDH 259
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 39.0 bits (89), Expect = 4e-05
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDV 65
W + + D D +++++ S D+ +++V
Sbjct: 288 LLNAWRTPYGASI------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 34.4 bits (77), Expect = 0.001
Identities = 8/72 (11%), Positives = 18/72 (25%), Gaps = 22/72 (30%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKF-------------------NG---AA 72
H + + + +S KD + W +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323
Query: 73 NSKDQTIKLWDV 84
S D+ +++V
Sbjct: 324 GSGDKKATVYEV 335
Score = 24.0 bits (50), Expect = 7.1
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 20/58 (34%)
Query: 34 GHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRKFSNKT 91
H + + + +RH+ + +K+WD+ NK+
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG--------------------KGCVKVWDISHPGNKS 86
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 37.9 bits (86), Expect = 9e-05
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
++++ V L H +T +D DS +++ D+ +W
Sbjct: 30 EVHIYEKSG---NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Score = 34.4 bits (77), Expect = 0.002
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 16 WDRRTLNETTAKP-VGVLAGHRDGITFI----DPKGDSRHLISNSKDQTIKLWDVR 66
D++ +E +A G+ + H++ ++ I K + D + +WDVR
Sbjct: 304 LDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359
Score = 27.5 bits (59), Expect = 0.37
Identities = 6/98 (6%), Positives = 22/98 (22%), Gaps = 25/98 (25%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWD--------VRKFNG---------------- 70
+ I+ D + + + +++ V +
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNR 65
Query: 71 -AANSKDQTIKLWDVRKFSNKTAQRNTFRAVCEQNWEY 107
D+ +W ++ + K + +
Sbjct: 66 IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 103
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 37.1 bits (84), Expect = 2e-04
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 29 VGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFN 69
H I + + +S S D +K+WD + +
Sbjct: 7 ANAGKAHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLD 45
Score = 31.0 bits (68), Expect = 0.028
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
++ +++ H + + L S D ++ WDV+
Sbjct: 266 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320
Score = 29.4 bits (64), Expect = 0.10
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 8/64 (12%)
Query: 12 TCFVWDRRTLNETTAKPVGV-LAGHRDGITFID-------PKGDSRHLISNSKDQTIKLW 63
VWD + L+ K H+ G+ +D + + + S + +
Sbjct: 35 YLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY 94
Query: 64 DVRK 67
+ +
Sbjct: 95 RITR 98
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 35.7 bits (80), Expect = 6e-04
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 27 KPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
+ + ++GH GIT + LIS S D I W
Sbjct: 4 EVLKTISGHNKGITALT----VNPLISGSYDGRIMEWSSSS 40
Score = 33.0 bits (73), Expect = 0.005
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 23/73 (31%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG-----------------------A 71
+ + + + + S D I ++ V++
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLV 273
Query: 72 ANSKDQTIKLWDV 84
++ D IK W+V
Sbjct: 274 SSGADACIKRWNV 286
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 33.7 bits (75), Expect = 0.003
Identities = 7/56 (12%), Positives = 19/56 (33%), Gaps = 9/56 (16%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
+D +T + ++ +T + D + ++ D I + + K
Sbjct: 299 VLLKYDVKT---------RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Score = 29.1 bits (63), Expect = 0.12
Identities = 6/90 (6%), Positives = 19/90 (21%), Gaps = 19/90 (21%)
Query: 16 WDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNG----- 70
++ + + L + + + + + +DV+
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN 315
Query: 71 --------------AANSKDQTIKLWDVRK 86
D I + + K
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 32.6 bits (72), Expect = 0.006
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 31 VLAGHRDG-ITFIDPKGDSRHLISNSKDQTIKLWDVRK 67
L GH IT + + ++I+ + D+ I+++D
Sbjct: 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN 42
Score = 27.2 bits (58), Expect = 0.52
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 24/65 (36%)
Query: 47 DSRHLISNSKDQTIKLWDVR-------------------KFNG----AANSKDQTIKLWD 83
S +++ + + ++++R F G AA KD L
Sbjct: 292 VSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLE- 350
Query: 84 VRKFS 88
+ FS
Sbjct: 351 ILDFS 355
Score = 26.0 bits (55), Expect = 1.3
Identities = 14/135 (10%), Positives = 34/135 (25%), Gaps = 36/135 (26%)
Query: 9 SLVTCFVWDRRTL------------NETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK 56
S++TC ++ + + K + L+GH G+ + + ++
Sbjct: 14 SVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTD 73
Query: 57 DQTIKLWDVRKFNG------------------------AANSKDQTIKLWDVRKFSNKTA 92
+ S+D T+ +W + K S+
Sbjct: 74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPD 133
Query: 93 QRNTFRAVCEQNWEY 107
+
Sbjct: 134 HGEEHDYPLVFHTPE 148
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 32.2 bits (71), Expect = 0.009
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 26/64 (40%)
Query: 47 DSRHLISNSKDQTIKLWDVR------KFNG--------------------AANSKDQTIK 80
DS+ + D TI++WDV K+ + S D T+
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 81 LWDV 84
+++
Sbjct: 322 FYEL 325
Score = 23.7 bits (49), Expect = 6.9
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 71 AANSKDQTIKLWDVRK 86
A D TI++WDV
Sbjct: 267 ATVGADATIRVWDVTT 282
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 32.2 bits (71), Expect = 0.009
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 24/73 (32%)
Query: 35 HRDGITFIDPKGDSRHLISNSKDQTIKLWDVRK---------------------FNG--- 70
H + + D + S S D+TIK+W+V +
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296
Query: 71 AANSKDQTIKLWD 83
+ S + I +
Sbjct: 297 VSISANGFINFVN 309
Score = 30.3 bits (66), Expect = 0.039
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGH-RDGITFIDPKGDSRHLISNSKDQTIKLWD 64
T +W+ T K + R + + L+S S + I +
Sbjct: 261 TIKIWNVAT-----LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 28.7 bits (62), Expect = 0.17
Identities = 5/57 (8%), Positives = 14/57 (24%), Gaps = 5/57 (8%)
Query: 7 VASLVTCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLW 63
+ + + +L + H T + S +++W
Sbjct: 34 YCNGTSVYTVPVGSL-----TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85
Score = 25.2 bits (53), Expect = 2.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 71 AANSKDQTIKLWDVRKFS 88
A+ S D+TIK+W+V
Sbjct: 254 ASASADKTIKIWNVATLK 271
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 31.3 bits (70), Expect = 0.020
Identities = 7/58 (12%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKF 68
+ D TT + + + R T + ++ I + D
Sbjct: 84 KVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 141
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 30.1 bits (66), Expect = 0.045
Identities = 9/55 (16%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
V D +T +G D I ++ D+T+ + D
Sbjct: 281 FVVVLDAKTGERLAKFEMG---HEIDSINV-SQDEKPLLYALSTGDKTLYIHDAE 331
Score = 26.3 bits (56), Expect = 0.90
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 3/58 (5%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAG---HRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
FV D G L DG + + ++++D
Sbjct: 29 QQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86
Score = 25.1 bits (53), Expect = 3.0
Identities = 9/105 (8%), Positives = 21/105 (20%), Gaps = 31/105 (29%)
Query: 12 TCFVWDRRTLNETTAKPVG-------VLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWD 64
+ G +A HR + + + + D
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286
Query: 65 V------------------------RKFNGAANSKDQTIKLWDVR 85
+ A ++ D+T+ + D
Sbjct: 287 AKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 29.3 bits (64), Expect = 0.11
Identities = 3/55 (5%), Positives = 11/55 (20%), Gaps = 6/55 (10%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+D + A + + L + +++
Sbjct: 273 RLAKYDLKQRKLIKAANLD------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 27.9 bits (60), Expect = 0.25
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 13 CFVWDRRTLNETTAKPVGVLAGHRD--GITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+ ++ T K + D GI P G + ++ S T+ + D
Sbjct: 221 KYFNTVSMIDTGTNKITARIPVGPDPAGIAV-TPDG-KKVYVALSFCNTVSVIDTA 274
Score = 25.6 bits (54), Expect = 1.6
Identities = 9/79 (11%), Positives = 16/79 (20%), Gaps = 23/79 (29%)
Query: 52 ISNSKDQTIKLWDVR-----------------------KFNGAANSKDQTIKLWDVRKFS 88
I+NS+ I + DV AN+ + + D +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 89 NKTAQRNTFRAVCEQNWEY 107
Sbjct: 66 VIATVPAGSSPQGVAVSPD 84
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 27.5 bits (59), Expect = 0.38
Identities = 4/52 (7%), Positives = 11/52 (21%), Gaps = 6/52 (11%)
Query: 15 VWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+D P+ ++ D + + +D
Sbjct: 264 SFDLEKNASIKRVPLP------HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309
Score = 25.5 bits (54), Expect = 1.8
Identities = 6/55 (10%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
V D + + P G + +K +++ D+
Sbjct: 12 KLVVIDTEKMAVDKVITIADAGPTPMVPMV-APGG-RIAYATVNKSESLVKIDLV 64
Score = 24.4 bits (51), Expect = 4.4
Identities = 4/36 (11%), Positives = 15/36 (41%), Gaps = 5/36 (13%)
Query: 49 RHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDV 84
++++ ++ + + D + D+ I + D
Sbjct: 2 DYILAPARPDKLVVIDT-----EKMAVDKVITIADA 32
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 27.6 bits (60), Expect = 0.38
Identities = 6/56 (10%), Positives = 14/56 (25%), Gaps = 3/56 (5%)
Query: 14 FVWDRRTLNETTAKPVGVLAG---HRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
+V+D G G D + ++ +++ D
Sbjct: 1 YVYDADAKKLLGQIDGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNT 56
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 79
Score = 25.4 bits (56), Expect = 0.89
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 21 LNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSKDQT 59
L+ T + GV+ G F++ + I + +
Sbjct: 12 LHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQMKK 50
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 25.2 bits (53), Expect = 2.2
Identities = 4/59 (6%), Positives = 17/59 (28%), Gaps = 26/59 (44%)
Query: 52 ISNSKDQTIKLWDV--------------------------RKFNGAANSKDQTIKLWDV 84
I++ + Q I +W++ +++ + + + +
Sbjct: 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 24.9 bits (54), Expect = 3.1
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 18 RRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLISNSK-DQTIKLWDVRKF 68
+ L G H I+ D + D ++L N K + + +
Sbjct: 55 KEILGGDQQYLNG--DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIM 104
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 24.5 bits (52), Expect = 3.8
Identities = 6/59 (10%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 12 TCFVWDRRTLNETTAKPVGVLAGHRDGITFIDPKGDSRHLI-SNSKDQTIKLWDVRKFN 69
+ D T + + R + + R+ I + D
Sbjct: 84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 23.7 bits (50), Expect = 8.1
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 33 AGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVRKFNGAANSKDQTIKLWDVRK 86
G + DPK DS L+ Q L +R + + ++L + K
Sbjct: 28 MGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLR-------EEGEDVELDSILK 74
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 23.3 bits (49), Expect = 9.7
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 32 LAGHRDGITFIDPKGDSRHLISNSKDQTIKLWDVR 66
D + +DP GD KD + +D R
Sbjct: 74 GLLRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQR 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.410
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 412,439
Number of extensions: 15649
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 76
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.8 bits)