Query psy12851
Match_columns 148
No_of_seqs 144 out of 1171
Neff 11.2
Searched_HMMs 46136
Date Fri Aug 16 21:23:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 100.0 2E-32 4.3E-37 165.5 17.5 145 2-147 11-155 (160)
2 KOG0027|consensus 100.0 4.1E-29 8.9E-34 153.6 17.2 143 5-147 2-148 (151)
3 PTZ00184 calmodulin; Provision 100.0 6.5E-27 1.4E-31 143.7 18.2 147 1-147 1-147 (149)
4 KOG0028|consensus 100.0 4.4E-27 9.6E-32 139.7 16.0 146 3-148 25-170 (172)
5 PTZ00183 centrin; Provisional 100.0 3.1E-26 6.6E-31 142.1 18.5 145 3-147 9-153 (158)
6 KOG0031|consensus 99.9 1.4E-24 3E-29 128.2 16.0 141 3-147 24-164 (171)
7 KOG0034|consensus 99.9 7.1E-22 1.5E-26 123.6 15.0 140 4-147 26-174 (187)
8 KOG0030|consensus 99.9 1.2E-21 2.5E-26 114.1 13.2 143 4-147 4-150 (152)
9 KOG0037|consensus 99.9 8.1E-20 1.8E-24 114.3 14.8 130 10-146 56-186 (221)
10 KOG0044|consensus 99.8 4.9E-19 1.1E-23 111.0 14.2 142 3-147 21-174 (193)
11 KOG0036|consensus 99.8 8.5E-19 1.8E-23 118.8 15.1 136 5-146 8-144 (463)
12 PLN02964 phosphatidylserine de 99.6 2.8E-14 6.1E-19 103.9 14.6 104 4-112 136-243 (644)
13 KOG4223|consensus 99.6 6.3E-14 1.4E-18 92.8 10.1 136 9-144 161-301 (325)
14 KOG0037|consensus 99.5 1.9E-13 4.1E-18 86.1 11.2 92 10-108 123-216 (221)
15 KOG0027|consensus 99.5 1.9E-13 4.2E-18 84.1 11.0 101 46-147 7-112 (151)
16 cd05022 S-100A13 S-100A13: S-1 99.5 4.4E-14 9.6E-19 78.7 7.1 64 84-147 8-74 (89)
17 PF13499 EF-hand_7: EF-hand do 99.5 7.2E-14 1.6E-18 74.2 7.4 61 86-146 2-66 (66)
18 KOG4223|consensus 99.5 2.1E-13 4.5E-18 90.4 9.9 138 9-146 75-226 (325)
19 KOG0044|consensus 99.5 1.2E-12 2.6E-17 82.4 12.5 119 27-147 8-127 (193)
20 KOG0038|consensus 99.5 1.1E-12 2.4E-17 77.6 11.4 139 5-147 22-176 (189)
21 COG5126 FRQ1 Ca2+-binding prot 99.5 2.1E-12 4.5E-17 78.8 11.9 98 48-147 21-119 (160)
22 cd05027 S-100B S-100B: S-100B 99.5 4.1E-13 8.9E-18 74.9 8.1 64 84-147 8-78 (88)
23 KOG0377|consensus 99.5 9.9E-13 2.1E-17 90.7 11.4 136 10-147 463-614 (631)
24 PTZ00183 centrin; Provisional 99.5 4E-12 8.7E-17 78.7 12.5 100 47-147 17-117 (158)
25 PF13499 EF-hand_7: EF-hand do 99.5 4E-13 8.7E-18 71.3 6.8 62 12-73 1-66 (66)
26 cd05022 S-100A13 S-100A13: S-1 99.4 1.3E-12 2.7E-17 72.8 8.0 70 7-76 4-76 (89)
27 cd05027 S-100B S-100B: S-100B 99.4 4.1E-12 8.9E-17 70.9 8.7 69 8-76 5-80 (88)
28 smart00027 EH Eps15 homology d 99.4 4.5E-12 9.7E-17 72.2 8.9 70 4-75 3-72 (96)
29 PTZ00184 calmodulin; Provision 99.4 1.6E-11 3.4E-16 75.2 11.9 99 48-147 12-111 (149)
30 cd05031 S-100A10_like S-100A10 99.4 6E-12 1.3E-16 71.4 7.6 64 84-147 8-78 (94)
31 cd05025 S-100A1 S-100A1: S-100 99.4 9.6E-12 2.1E-16 70.2 8.0 65 83-147 8-79 (92)
32 cd05029 S-100A6 S-100A6: S-100 99.3 1.2E-11 2.5E-16 69.0 7.9 64 84-147 10-78 (88)
33 PF13833 EF-hand_8: EF-hand do 99.3 6.2E-12 1.3E-16 64.0 6.2 51 97-147 1-52 (54)
34 cd05029 S-100A6 S-100A6: S-100 99.3 2.2E-11 4.7E-16 67.9 8.8 70 7-76 6-80 (88)
35 cd05026 S-100Z S-100Z: S-100Z 99.3 1.1E-11 2.4E-16 70.0 7.5 64 84-147 10-80 (93)
36 cd00052 EH Eps15 homology doma 99.3 1.2E-11 2.5E-16 65.7 6.7 59 87-147 2-60 (67)
37 smart00027 EH Eps15 homology d 99.3 2.7E-11 5.9E-16 68.9 7.9 63 83-147 9-71 (96)
38 cd05025 S-100A1 S-100A1: S-100 99.3 5.5E-11 1.2E-15 67.1 9.1 69 8-76 6-81 (92)
39 cd05026 S-100Z S-100Z: S-100Z 99.3 5.7E-11 1.2E-15 67.1 9.0 69 8-76 7-82 (93)
40 KOG0028|consensus 99.3 1.5E-10 3.3E-15 69.7 11.0 99 47-146 33-132 (172)
41 cd00213 S-100 S-100: S-100 dom 99.3 4.5E-11 9.8E-16 67.0 8.3 70 7-76 4-80 (88)
42 PLN02964 phosphatidylserine de 99.3 4.9E-11 1.1E-15 87.4 10.5 119 26-147 119-242 (644)
43 cd05031 S-100A10_like S-100A10 99.3 5.6E-11 1.2E-15 67.4 8.5 68 8-75 5-79 (94)
44 cd00213 S-100 S-100: S-100 dom 99.3 3.4E-11 7.3E-16 67.5 7.4 65 83-147 7-78 (88)
45 cd00051 EFh EF-hand, calcium b 99.3 6E-11 1.3E-15 61.7 7.8 62 86-147 2-63 (63)
46 KOG2562|consensus 99.3 1.6E-10 3.5E-15 80.2 11.5 136 5-144 272-420 (493)
47 PF14658 EF-hand_9: EF-hand do 99.3 3.4E-11 7.3E-16 62.4 6.3 60 88-147 2-63 (66)
48 KOG0040|consensus 99.3 3.7E-10 8.1E-15 87.6 14.4 136 3-146 2245-2396(2399)
49 KOG0034|consensus 99.3 1.2E-10 2.5E-15 73.4 9.8 100 14-113 69-176 (187)
50 cd00052 EH Eps15 homology doma 99.2 7E-11 1.5E-15 62.7 7.2 60 14-75 2-61 (67)
51 cd05023 S-100A11 S-100A11: S-1 99.2 1.8E-10 4E-15 64.3 8.0 64 84-147 9-79 (89)
52 cd00252 SPARC_EC SPARC_EC; ext 99.2 2.1E-10 4.6E-15 67.0 7.7 60 83-146 47-106 (116)
53 cd00051 EFh EF-hand, calcium b 99.2 2.6E-10 5.7E-15 59.2 7.4 61 13-73 2-62 (63)
54 PF13833 EF-hand_8: EF-hand do 99.2 1.3E-10 2.9E-15 59.0 6.0 51 24-74 1-52 (54)
55 cd05023 S-100A11 S-100A11: S-1 99.1 9.7E-10 2.1E-14 61.4 8.7 70 7-76 5-81 (89)
56 KOG4251|consensus 99.1 5E-10 1.1E-14 72.2 7.6 67 8-74 98-167 (362)
57 cd00252 SPARC_EC SPARC_EC; ext 99.1 1.6E-09 3.5E-14 63.3 8.2 62 44-110 45-106 (116)
58 PF14658 EF-hand_9: EF-hand do 99.1 9.1E-10 2E-14 57.1 6.3 62 15-76 2-65 (66)
59 cd05030 calgranulins Calgranul 99.1 1.3E-09 2.8E-14 60.9 6.8 64 84-147 8-78 (88)
60 cd05030 calgranulins Calgranul 99.0 3.6E-09 7.9E-14 59.1 7.9 70 7-76 4-80 (88)
61 KOG2643|consensus 99.0 4.1E-09 8.9E-14 73.0 9.1 127 15-147 322-452 (489)
62 KOG0041|consensus 99.0 6.5E-09 1.4E-13 65.0 7.9 76 66-147 87-162 (244)
63 KOG0036|consensus 98.9 2.6E-08 5.6E-13 68.7 10.3 96 47-147 14-109 (463)
64 KOG0041|consensus 98.9 3.3E-08 7.2E-13 61.9 9.8 106 4-109 92-200 (244)
65 KOG0031|consensus 98.9 2.2E-08 4.8E-13 60.1 7.6 44 84-127 32-75 (171)
66 KOG0030|consensus 98.9 1.2E-08 2.7E-13 60.2 6.0 68 80-147 7-76 (152)
67 KOG2643|consensus 98.8 8.2E-08 1.8E-12 66.7 10.5 129 12-146 234-382 (489)
68 PF12763 EF-hand_4: Cytoskelet 98.8 2.3E-08 5E-13 57.3 6.1 68 4-74 3-70 (104)
69 KOG1029|consensus 98.8 2.3E-07 4.9E-12 68.7 11.9 137 5-146 10-255 (1118)
70 PF00036 EF-hand_1: EF hand; 98.8 2.3E-08 5E-13 43.8 3.8 27 86-112 2-28 (29)
71 cd05024 S-100A10 S-100A10: A s 98.7 2.5E-07 5.5E-12 51.4 8.1 63 84-147 8-75 (91)
72 cd05024 S-100A10 S-100A10: A s 98.7 5.5E-07 1.2E-11 50.1 9.2 68 8-76 5-77 (91)
73 PF00036 EF-hand_1: EF hand; 98.7 3.8E-08 8.2E-13 43.1 3.1 27 13-39 2-28 (29)
74 KOG0751|consensus 98.7 6.2E-07 1.3E-11 63.5 10.6 106 6-114 28-138 (694)
75 PF12763 EF-hand_4: Cytoskelet 98.6 4E-07 8.7E-12 52.2 7.3 63 81-146 7-69 (104)
76 PF13405 EF-hand_6: EF-hand do 98.6 9.3E-08 2E-12 42.6 3.2 30 12-41 1-31 (31)
77 PF13405 EF-hand_6: EF-hand do 98.6 1.5E-07 3.3E-12 41.9 3.8 30 85-114 1-31 (31)
78 KOG0169|consensus 98.5 5.4E-06 1.2E-10 61.5 13.2 137 7-148 132-274 (746)
79 PRK12309 transaldolase/EF-hand 98.5 1.4E-06 3.1E-11 61.2 9.5 56 79-147 329-384 (391)
80 KOG0377|consensus 98.5 1.2E-06 2.5E-11 61.4 7.4 62 13-74 549-614 (631)
81 KOG0038|consensus 98.4 3.6E-06 7.9E-11 50.4 8.3 100 14-113 74-178 (189)
82 KOG0046|consensus 98.4 1.7E-06 3.6E-11 61.7 7.8 74 2-76 10-86 (627)
83 KOG4666|consensus 98.4 1.2E-06 2.6E-11 59.0 6.1 99 47-146 259-357 (412)
84 KOG0751|consensus 98.4 2.6E-06 5.6E-11 60.5 8.1 78 62-144 162-240 (694)
85 KOG2562|consensus 98.4 1.7E-06 3.6E-11 60.8 6.7 129 13-145 227-376 (493)
86 PF14788 EF-hand_10: EF hand; 98.3 3E-06 6.4E-11 41.6 5.4 47 101-147 2-48 (51)
87 PF14788 EF-hand_10: EF hand; 98.3 3.2E-06 7E-11 41.5 5.3 48 28-75 2-49 (51)
88 KOG1707|consensus 98.3 1.1E-05 2.3E-10 58.6 10.2 143 2-146 186-375 (625)
89 PF13202 EF-hand_5: EF hand; P 98.3 1.2E-06 2.5E-11 36.9 3.2 23 87-109 2-24 (25)
90 PRK12309 transaldolase/EF-hand 98.2 1.3E-05 2.8E-10 56.5 8.1 60 40-113 327-386 (391)
91 PF13202 EF-hand_5: EF hand; P 98.2 2E-06 4.2E-11 36.2 2.6 24 13-36 1-24 (25)
92 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.4E-06 3E-11 50.9 1.6 61 82-144 52-112 (113)
93 KOG0040|consensus 98.1 1.1E-05 2.3E-10 64.1 6.5 64 84-147 2253-2323(2399)
94 PF10591 SPARC_Ca_bdg: Secrete 97.9 3.7E-06 8E-11 49.1 0.5 65 41-108 48-112 (113)
95 PF09279 EF-hand_like: Phospho 97.8 9.9E-05 2.1E-09 40.7 5.5 62 86-148 2-69 (83)
96 KOG4666|consensus 97.8 0.00015 3.2E-09 49.3 6.8 102 11-114 259-361 (412)
97 KOG0046|consensus 97.7 0.00023 5.1E-09 51.2 6.8 62 84-146 19-83 (627)
98 KOG0035|consensus 97.7 0.0013 2.8E-08 50.6 11.0 105 3-108 739-848 (890)
99 PF05042 Caleosin: Caleosin re 97.6 0.0013 2.8E-08 40.9 8.2 133 11-144 7-162 (174)
100 KOG4065|consensus 97.5 0.00045 9.7E-09 39.9 5.2 58 89-146 72-143 (144)
101 smart00054 EFh EF-hand, calciu 97.4 0.00025 5.4E-09 30.0 3.0 27 13-39 2-28 (29)
102 smart00054 EFh EF-hand, calciu 97.4 0.00019 4.2E-09 30.3 2.5 23 124-146 4-26 (29)
103 KOG4065|consensus 97.4 0.0015 3.2E-08 37.8 6.5 66 4-71 62-141 (144)
104 PF09279 EF-hand_like: Phospho 97.3 0.0011 2.4E-08 36.5 5.4 62 13-75 2-69 (83)
105 KOG1955|consensus 97.3 0.0012 2.6E-08 47.5 6.6 70 4-75 224-293 (737)
106 KOG1955|consensus 97.1 0.0016 3.5E-08 46.9 5.7 63 83-147 230-292 (737)
107 KOG4251|consensus 97.0 0.00043 9.4E-09 45.4 2.1 62 83-144 100-164 (362)
108 KOG0998|consensus 96.8 0.0016 3.4E-08 50.7 4.0 136 5-145 123-342 (847)
109 PLN02952 phosphoinositide phos 96.8 0.037 8E-07 41.6 10.5 85 62-147 15-109 (599)
110 KOG1029|consensus 96.7 0.0041 8.9E-08 47.2 4.9 66 6-73 190-255 (1118)
111 KOG0042|consensus 96.7 0.0061 1.3E-07 44.8 5.6 73 4-76 586-658 (680)
112 PF05517 p25-alpha: p25-alpha 96.6 0.019 4.2E-07 35.5 6.7 64 13-76 1-70 (154)
113 KOG3555|consensus 96.5 0.013 2.8E-07 40.5 6.0 98 12-114 212-312 (434)
114 KOG2243|consensus 96.4 0.0073 1.6E-07 49.0 5.1 56 90-146 4063-4118(5019)
115 KOG0998|consensus 96.4 0.0037 7.9E-08 48.7 3.5 137 5-146 5-188 (847)
116 KOG1265|consensus 96.2 0.33 7.3E-06 38.1 12.4 121 21-148 158-299 (1189)
117 KOG0169|consensus 96.2 0.092 2E-06 40.1 9.3 97 45-146 134-230 (746)
118 PF05517 p25-alpha: p25-alpha 96.1 0.06 1.3E-06 33.3 7.0 51 96-146 14-67 (154)
119 KOG4578|consensus 95.5 0.012 2.6E-07 40.4 2.3 64 49-112 335-398 (421)
120 KOG1707|consensus 95.4 0.06 1.3E-06 40.0 5.8 67 3-75 307-377 (625)
121 KOG4347|consensus 95.2 0.049 1.1E-06 40.8 4.7 56 49-106 557-612 (671)
122 KOG1264|consensus 95.1 0.19 4.2E-06 39.1 7.8 142 5-147 137-292 (1267)
123 KOG0042|consensus 94.9 0.07 1.5E-06 39.6 4.8 63 85-147 594-656 (680)
124 KOG4347|consensus 94.9 0.047 1E-06 40.9 4.0 76 64-140 535-610 (671)
125 PLN02952 phosphoinositide phos 94.8 0.82 1.8E-05 34.7 10.3 87 24-111 13-109 (599)
126 KOG4578|consensus 94.7 0.026 5.6E-07 38.9 2.3 64 13-76 335-399 (421)
127 KOG2243|consensus 94.6 0.082 1.8E-06 43.5 4.9 56 17-73 4063-4118(5019)
128 KOG3555|consensus 94.6 0.11 2.3E-06 36.2 4.9 62 82-147 248-309 (434)
129 PF05042 Caleosin: Caleosin re 94.5 0.38 8.3E-06 30.2 6.9 30 10-39 95-124 (174)
130 PF09069 EF-hand_3: EF-hand; 94.5 0.44 9.6E-06 26.7 7.8 61 84-147 3-74 (90)
131 PF08726 EFhand_Ca_insen: Ca2+ 94.1 0.033 7.1E-07 29.5 1.3 57 82-146 4-67 (69)
132 PF14513 DAG_kinase_N: Diacylg 93.6 0.21 4.5E-06 30.3 4.3 70 26-97 6-82 (138)
133 cd07313 terB_like_2 tellurium 93.2 0.76 1.6E-05 26.2 6.2 83 24-108 12-96 (104)
134 KOG3866|consensus 92.2 0.46 9.9E-06 32.8 4.9 60 86-145 246-321 (442)
135 PF09069 EF-hand_3: EF-hand; 91.8 1.4 3E-05 24.7 7.3 62 11-75 3-75 (90)
136 KOG0035|consensus 91.2 0.96 2.1E-05 35.8 6.2 65 83-147 746-815 (890)
137 PLN02222 phosphoinositide phos 89.8 2.6 5.7E-05 32.0 7.2 67 43-111 21-89 (581)
138 PF07308 DUF1456: Protein of u 89.6 1.7 3.6E-05 23.0 4.6 46 101-146 14-59 (68)
139 PLN02228 Phosphoinositide phos 89.4 3.6 7.8E-05 31.2 7.7 67 42-110 19-90 (567)
140 KOG2301|consensus 88.9 1 2.2E-05 38.1 5.0 71 4-75 1410-1484(1592)
141 PF12174 RST: RCD1-SRO-TAF4 (R 88.8 0.49 1.1E-05 25.1 2.2 48 62-113 7-54 (70)
142 PLN02230 phosphoinositide phos 88.7 4.2 9.2E-05 31.1 7.7 27 85-112 30-56 (598)
143 KOG3077|consensus 88.6 5.8 0.00013 26.9 11.1 105 10-114 63-187 (260)
144 KOG2871|consensus 88.4 0.55 1.2E-05 33.2 2.8 60 83-142 308-368 (449)
145 KOG0039|consensus 86.7 2.4 5.2E-05 32.8 5.6 78 61-146 2-87 (646)
146 PF08414 NADPH_Ox: Respiratory 86.7 4.1 8.8E-05 23.2 5.1 24 10-35 29-52 (100)
147 PF08976 DUF1880: Domain of un 85.6 0.83 1.8E-05 26.8 2.1 33 43-75 3-35 (118)
148 KOG1265|consensus 85.1 19 0.00041 29.2 9.9 78 32-112 209-299 (1189)
149 PLN02228 Phosphoinositide phos 84.6 11 0.00025 28.7 8.0 62 10-73 23-90 (567)
150 PTZ00373 60S Acidic ribosomal 84.4 6.2 0.00014 23.1 6.6 45 86-130 5-49 (112)
151 PF01023 S_100: S-100/ICaBP ty 84.1 3.3 7.2E-05 19.7 4.1 32 8-39 3-36 (44)
152 PF03672 UPF0154: Uncharacteri 83.6 4.4 9.6E-05 21.1 4.0 32 26-57 30-61 (64)
153 PF03672 UPF0154: Uncharacteri 82.6 4.9 0.00011 20.9 4.0 32 98-129 29-60 (64)
154 PF11116 DUF2624: Protein of u 82.4 6.4 0.00014 21.8 7.1 68 26-93 13-82 (85)
155 PRK00523 hypothetical protein; 82.4 5.2 0.00011 21.3 4.1 31 26-56 38-68 (72)
156 PF07308 DUF1456: Protein of u 82.3 5.6 0.00012 21.0 5.3 46 28-73 14-59 (68)
157 PF09068 EF-hand_2: EF hand; 82.2 8.6 0.00019 23.1 7.6 28 85-112 98-125 (127)
158 PF05099 TerB: Tellurite resis 82.1 1.9 4.2E-05 25.9 2.9 80 24-105 36-117 (140)
159 PF12174 RST: RCD1-SRO-TAF4 (R 81.5 2.5 5.5E-05 22.4 2.8 48 27-77 8-55 (70)
160 KOG3866|consensus 81.5 5.7 0.00012 27.7 5.1 82 30-111 226-323 (442)
161 PLN02230 phosphoinositide phos 80.8 15 0.00033 28.3 7.5 65 10-75 28-102 (598)
162 KOG4004|consensus 80.7 0.63 1.4E-05 30.0 0.4 49 96-146 200-248 (259)
163 PRK00523 hypothetical protein; 80.2 6.6 0.00014 21.0 4.0 32 98-129 37-68 (72)
164 COG3763 Uncharacterized protei 80.2 6.9 0.00015 20.7 5.1 32 26-57 37-68 (71)
165 KOG2871|consensus 79.9 1.9 4.1E-05 30.7 2.5 64 10-73 308-372 (449)
166 KOG4301|consensus 79.3 9.3 0.0002 27.1 5.5 74 4-78 101-176 (434)
167 KOG4403|consensus 78.7 14 0.00031 27.1 6.5 96 23-122 40-140 (575)
168 TIGR01639 P_fal_TIGR01639 Plas 78.1 7.6 0.00016 20.0 4.0 33 25-57 7-39 (61)
169 PLN02223 phosphoinositide phos 78.0 19 0.0004 27.4 7.1 13 135-147 79-91 (537)
170 cd05833 Ribosomal_P2 Ribosomal 77.7 12 0.00025 21.9 6.6 44 87-130 4-47 (109)
171 PRK01844 hypothetical protein; 76.7 9.4 0.0002 20.4 4.0 30 27-56 38-67 (72)
172 cd07313 terB_like_2 tellurium 76.5 6 0.00013 22.4 3.6 53 61-113 13-66 (104)
173 KOG4286|consensus 76.4 30 0.00065 27.5 7.8 129 13-146 422-578 (966)
174 KOG3449|consensus 76.2 13 0.00028 21.6 6.7 55 14-73 4-58 (112)
175 PLN02222 phosphoinositide phos 76.1 24 0.00052 27.2 7.3 63 11-75 25-90 (581)
176 PF00404 Dockerin_1: Dockerin 75.7 4.4 9.5E-05 16.0 2.5 16 21-36 1-16 (21)
177 PRK01844 hypothetical protein; 75.0 11 0.00023 20.2 3.9 31 99-129 37-67 (72)
178 KOG3449|consensus 73.9 15 0.00033 21.4 5.3 44 87-130 4-47 (112)
179 TIGR00624 tag DNA-3-methyladen 73.6 21 0.00046 22.9 6.0 101 10-115 52-168 (179)
180 PF11116 DUF2624: Protein of u 73.6 13 0.00029 20.6 5.9 49 64-113 15-63 (85)
181 COG3763 Uncharacterized protei 73.1 12 0.00026 19.8 3.8 32 98-129 36-67 (71)
182 KOG1954|consensus 72.7 11 0.00024 27.3 4.7 56 85-143 445-500 (532)
183 cd00086 homeodomain Homeodomai 71.4 11 0.00023 18.6 6.4 47 3-56 5-51 (59)
184 KOG4004|consensus 70.7 1.8 3.9E-05 28.0 0.5 47 61-110 202-248 (259)
185 PLN02223 phosphoinositide phos 70.4 38 0.00082 25.9 7.1 66 9-75 14-92 (537)
186 PF08461 HTH_12: Ribonuclease 69.4 13 0.00028 19.4 3.5 37 24-60 10-46 (66)
187 TIGR03573 WbuX N-acetyl sugar 68.3 18 0.00038 25.7 5.1 44 97-146 299-342 (343)
188 cd04411 Ribosomal_P1_P2_L12p R 67.9 21 0.00046 20.7 7.0 30 101-130 17-46 (105)
189 PF00046 Homeobox: Homeobox do 67.7 13 0.00029 18.2 6.0 46 3-55 5-50 (57)
190 PF04157 EAP30: EAP30/Vps36 fa 67.5 33 0.00072 22.7 7.1 113 11-129 97-214 (223)
191 PF09336 Vps4_C: Vps4 C termin 67.2 10 0.00022 19.5 2.8 26 100-125 29-54 (62)
192 PF02761 Cbl_N2: CBL proto-onc 67.2 20 0.00042 19.9 6.6 70 43-114 3-72 (85)
193 COG5069 SAC6 Ca2+-binding acti 67.1 26 0.00055 26.3 5.6 100 6-110 480-583 (612)
194 TIGR01565 homeo_ZF_HD homeobox 66.6 16 0.00034 18.6 4.8 35 3-42 6-44 (58)
195 PLN00138 large subunit ribosom 64.8 26 0.00057 20.6 5.8 43 88-130 5-47 (113)
196 PRK10353 3-methyl-adenine DNA 63.6 28 0.00061 22.5 4.8 103 10-115 53-171 (187)
197 PF14513 DAG_kinase_N: Diacylg 62.8 33 0.00071 21.0 6.0 35 98-132 46-81 (138)
198 PF12419 DUF3670: SNF2 Helicas 62.8 23 0.0005 21.6 4.2 49 97-145 80-138 (141)
199 PF07499 RuvA_C: RuvA, C-termi 62.1 17 0.00037 17.4 4.4 37 104-144 4-40 (47)
200 KOG4070|consensus 61.5 18 0.00039 22.5 3.5 85 10-94 11-108 (180)
201 TIGR02675 tape_meas_nterm tape 61.4 15 0.00032 19.7 2.9 13 61-73 28-40 (75)
202 TIGR01848 PHA_reg_PhaR polyhyd 60.4 32 0.00069 20.0 4.5 70 55-135 11-84 (107)
203 PF12486 DUF3702: ImpA domain 60.3 39 0.00084 21.0 6.0 42 8-49 66-111 (148)
204 PF06163 DUF977: Bacterial pro 60.1 36 0.00077 20.5 5.2 50 1-56 1-50 (127)
205 cd07316 terB_like_DjlA N-termi 58.8 31 0.00067 19.4 7.2 82 24-107 12-96 (106)
206 PRK06402 rpl12p 50S ribosomal 58.4 35 0.00075 19.9 6.7 31 100-130 16-46 (106)
207 PF03250 Tropomodulin: Tropomo 57.8 28 0.00061 21.5 3.9 22 3-24 22-43 (147)
208 PF03979 Sigma70_r1_1: Sigma-7 57.1 16 0.00034 19.9 2.6 14 61-74 19-32 (82)
209 KOG1954|consensus 57.1 32 0.00069 25.2 4.5 56 13-71 446-501 (532)
210 PF07879 PHB_acc_N: PHB/PHA ac 57.0 27 0.00059 18.2 3.2 37 92-128 11-57 (64)
211 cd07176 terB tellurite resista 56.7 30 0.00065 19.6 3.9 80 24-106 15-99 (111)
212 COG4103 Uncharacterized protei 56.7 45 0.00097 20.6 7.6 92 15-110 34-127 (148)
213 KOG0506|consensus 56.5 48 0.001 25.0 5.4 60 87-146 89-156 (622)
214 PF05872 DUF853: Bacterial pro 56.1 76 0.0016 23.9 6.4 36 5-40 122-157 (502)
215 PF11829 DUF3349: Protein of u 56.0 37 0.00079 19.4 6.3 47 28-74 20-66 (96)
216 KOG3077|consensus 54.7 67 0.0015 22.0 6.1 60 85-144 65-125 (260)
217 PTZ00373 60S Acidic ribosomal 54.4 43 0.00093 19.7 6.8 52 16-72 8-59 (112)
218 COG2818 Tag 3-methyladenine DN 53.9 5.8 0.00013 25.5 0.6 43 82-124 53-95 (188)
219 KOG4286|consensus 53.8 1.1E+02 0.0023 24.7 7.0 94 44-137 417-523 (966)
220 PRK00819 RNA 2'-phosphotransfe 53.3 46 0.001 21.4 4.5 31 97-127 30-60 (179)
221 KOG0506|consensus 53.1 60 0.0013 24.5 5.4 59 15-73 90-156 (622)
222 TIGR02787 codY_Gpos GTP-sensin 53.0 70 0.0015 21.8 5.7 46 5-56 177-222 (251)
223 PF06648 DUF1160: Protein of u 52.7 49 0.0011 19.8 4.7 43 11-56 37-80 (122)
224 PF01885 PTS_2-RNA: RNA 2'-pho 52.6 39 0.00084 21.8 4.2 36 95-130 27-62 (186)
225 COG2818 Tag 3-methyladenine DN 52.2 17 0.00036 23.4 2.4 43 10-52 54-96 (188)
226 PF13623 SurA_N_2: SurA N-term 51.6 49 0.0011 20.4 4.3 42 105-146 94-145 (145)
227 PF09107 SelB-wing_3: Elongati 50.4 31 0.00068 16.9 3.1 31 98-133 8-38 (50)
228 PF13551 HTH_29: Winged helix- 50.1 46 0.00099 18.8 6.5 51 5-55 58-110 (112)
229 PHA02105 hypothetical protein 48.5 37 0.0008 17.2 3.5 46 101-146 5-55 (68)
230 COG5562 Phage envelope protein 48.4 15 0.00032 22.3 1.7 46 97-146 53-98 (137)
231 PRK09430 djlA Dna-J like membr 48.0 73 0.0016 21.9 5.1 51 61-112 69-120 (267)
232 PF07128 DUF1380: Protein of u 47.8 52 0.0011 20.2 3.9 31 101-131 27-57 (139)
233 PF13608 Potyvirid-P3: Protein 47.4 38 0.00082 25.2 3.9 31 8-39 286-316 (445)
234 PF15144 DUF4576: Domain of un 47.3 11 0.00024 20.4 0.9 41 24-65 37-77 (88)
235 PF04157 EAP30: EAP30/Vps36 fa 46.7 84 0.0018 20.8 11.0 40 96-135 109-151 (223)
236 KOG0148|consensus 45.9 2.7 5.7E-05 28.7 -1.9 73 42-115 16-88 (321)
237 PF04558 tRNA_synt_1c_R1: Glut 45.3 78 0.0017 20.0 6.8 47 82-129 83-129 (164)
238 COG2058 RPP1A Ribosomal protei 44.8 63 0.0014 18.9 6.2 41 89-130 6-46 (109)
239 PRK14981 DNA-directed RNA poly 44.7 62 0.0013 18.9 3.9 28 102-129 80-107 (112)
240 PF01885 PTS_2-RNA: RNA 2'-pho 44.4 51 0.0011 21.3 3.8 35 22-56 27-61 (186)
241 COG1460 Uncharacterized protei 43.8 54 0.0012 19.4 3.4 30 101-130 80-109 (114)
242 KOG0488|consensus 43.7 1E+02 0.0022 21.8 5.4 45 4-55 178-222 (309)
243 cd07177 terB_like tellurium re 43.3 58 0.0012 17.9 5.0 79 24-107 12-95 (104)
244 cd04411 Ribosomal_P1_P2_L12p R 42.6 68 0.0015 18.6 6.8 43 28-75 17-59 (105)
245 PF02037 SAP: SAP domain; Int 42.3 35 0.00075 15.1 2.3 18 100-117 3-20 (35)
246 cd05833 Ribosomal_P2 Ribosomal 42.2 71 0.0015 18.7 6.8 55 16-75 6-60 (109)
247 PRK09430 djlA Dna-J like membr 42.1 1.1E+02 0.0025 21.0 11.5 98 24-128 68-174 (267)
248 PF04433 SWIRM: SWIRM domain; 42.0 33 0.00072 18.7 2.4 39 52-95 42-80 (86)
249 PF09373 PMBR: Pseudomurein-bi 41.0 36 0.00078 14.9 2.1 15 98-112 2-16 (33)
250 PF07199 DUF1411: Protein of u 40.2 1E+02 0.0023 20.1 6.7 59 15-73 126-184 (194)
251 COG4103 Uncharacterized protei 39.7 92 0.002 19.3 4.4 58 51-112 34-94 (148)
252 PF05788 Orbi_VP1: Orbivirus R 39.7 40 0.00086 28.0 3.2 37 24-60 1134-1170(1301)
253 TIGR00135 gatC glutamyl-tRNA(G 38.6 72 0.0016 17.7 4.1 28 101-128 1-28 (93)
254 TIGR03573 WbuX N-acetyl sugar 38.4 1.4E+02 0.0029 21.4 5.5 65 33-110 276-342 (343)
255 PF14771 DUF4476: Domain of un 37.9 75 0.0016 17.7 8.8 13 63-75 39-51 (95)
256 cd03521 Link_domain_KIAA0527_l 37.5 62 0.0013 18.3 2.9 36 93-128 6-42 (95)
257 PF07862 Nif11: Nitrogen fixat 36.6 54 0.0012 15.7 2.9 21 29-49 28-48 (49)
258 KOG2301|consensus 36.5 44 0.00095 29.2 3.1 34 81-114 1414-1447(1592)
259 cd04790 HTH_Cfa-like_unk Helix 36.5 1.1E+02 0.0024 19.4 5.2 33 98-130 113-146 (172)
260 PRK00819 RNA 2'-phosphotransfe 36.4 1.1E+02 0.0023 19.8 4.2 43 22-67 28-70 (179)
261 TIGR02574 stabl_TIGR02574 puta 36.1 65 0.0014 16.5 4.4 56 4-71 2-58 (63)
262 PF03352 Adenine_glyco: Methyl 35.5 34 0.00074 22.0 1.9 43 11-53 49-91 (179)
263 smart00513 SAP Putative DNA-bi 35.1 47 0.001 14.6 2.7 18 27-44 3-20 (35)
264 PF06384 ICAT: Beta-catenin-in 34.7 82 0.0018 17.2 3.0 23 105-127 21-43 (78)
265 KOG4718|consensus 34.6 1.4E+02 0.0031 19.9 4.7 56 1-56 89-146 (235)
266 cd05831 Ribosomal_P1 Ribosomal 34.4 96 0.0021 17.9 5.4 33 98-130 15-47 (103)
267 KOG0039|consensus 34.3 1.5E+02 0.0033 23.4 5.5 26 86-111 63-88 (646)
268 PF02885 Glycos_trans_3N: Glyc 33.9 73 0.0016 16.4 3.8 41 83-126 17-58 (66)
269 PRK08181 transposase; Validate 33.6 1.1E+02 0.0024 21.0 4.3 45 99-146 5-49 (269)
270 KOG0843|consensus 33.4 1.4E+02 0.003 19.4 4.5 47 3-56 107-153 (197)
271 cd07894 Adenylation_RNA_ligase 32.2 1.9E+02 0.0042 20.8 5.6 38 21-58 135-182 (342)
272 COG3877 Uncharacterized protei 31.9 64 0.0014 18.8 2.4 40 105-147 77-121 (122)
273 PF09851 SHOCT: Short C-termin 31.7 53 0.0011 14.1 3.7 14 25-38 14-27 (31)
274 PRK00034 gatC aspartyl/glutamy 31.6 99 0.0021 17.2 4.1 28 101-128 3-30 (95)
275 COG4359 Uncharacterized conser 31.2 1.6E+02 0.0034 19.4 4.4 15 24-38 10-24 (220)
276 PF01316 Arg_repressor: Argini 30.2 94 0.002 16.5 3.8 32 99-130 18-49 (70)
277 PLN00138 large subunit ribosom 30.1 1.2E+02 0.0027 17.8 6.6 50 17-71 7-56 (113)
278 TIGR03685 L21P_arch 50S riboso 29.7 1.2E+02 0.0026 17.6 5.9 31 100-130 16-46 (105)
279 KOG0871|consensus 29.6 1.5E+02 0.0032 18.5 4.2 27 90-116 56-82 (156)
280 TIGR03798 ocin_TIGR03798 bacte 29.1 90 0.002 16.0 3.8 25 101-125 25-49 (64)
281 PF08100 Dimerisation: Dimeris 28.6 38 0.00082 16.7 1.1 23 89-111 11-33 (51)
282 KOG4301|consensus 28.3 1.2E+02 0.0027 21.8 3.8 53 91-144 117-169 (434)
283 PF08671 SinI: Anti-repressor 28.0 61 0.0013 14.0 1.6 11 101-111 17-27 (30)
284 PF11020 DUF2610: Domain of un 28.0 77 0.0017 17.4 2.2 32 114-145 43-74 (82)
285 COG4465 CodY Pleiotropic trans 27.7 2E+02 0.0043 19.4 4.5 48 5-58 183-230 (261)
286 PF02337 Gag_p10: Retroviral G 27.6 1.2E+02 0.0027 17.0 3.7 8 132-139 69-76 (90)
287 PF12426 DUF3674: RNA dependen 27.3 64 0.0014 15.1 1.6 15 5-19 2-16 (41)
288 PF04814 HNF-1_N: Hepatocyte n 27.3 52 0.0011 21.2 1.7 34 1-41 1-34 (180)
289 PF06902 Fer4_19: Divergent 4F 27.3 31 0.00068 17.9 0.7 38 89-140 25-62 (64)
290 cd05832 Ribosomal_L12p Ribosom 27.3 1.4E+02 0.003 17.5 6.7 31 100-130 16-46 (106)
291 PF00627 UBA: UBA/TS-N domain; 27.0 71 0.0015 14.1 1.9 20 110-131 9-28 (37)
292 PF12207 DUF3600: Domain of un 26.5 1.7E+02 0.0037 18.3 3.7 54 58-113 63-118 (162)
293 KOG1264|consensus 26.4 3.8E+02 0.0083 22.3 7.1 87 60-147 157-248 (1267)
294 PF03732 Retrotrans_gag: Retro 26.3 1.2E+02 0.0025 16.3 6.6 58 63-121 26-85 (96)
295 PF11848 DUF3368: Domain of un 26.1 90 0.0019 15.0 3.8 32 98-129 15-47 (48)
296 PF02758 PYRIN: PAAD/DAPIN/Pyr 26.1 98 0.0021 16.8 2.6 33 3-35 10-42 (83)
297 PRK14074 rpsF 30S ribosomal pr 26.0 2.1E+02 0.0046 19.5 4.4 68 4-74 13-80 (257)
298 PF06226 DUF1007: Protein of u 25.7 86 0.0019 20.6 2.7 23 17-39 56-78 (212)
299 PF12631 GTPase_Cys_C: Catalyt 25.7 1.2E+02 0.0025 16.1 3.6 45 85-129 24-72 (73)
300 PF09312 SurA_N: SurA N-termin 25.7 1.3E+02 0.0029 17.5 3.2 13 25-37 10-22 (118)
301 PF09862 DUF2089: Protein of u 25.6 1.5E+02 0.0033 17.5 4.6 22 122-146 91-112 (113)
302 CHL00185 ycf59 magnesium-proto 25.6 2.3E+02 0.005 20.4 4.7 90 37-132 31-122 (351)
303 PF08355 EF_assoc_1: EF hand a 25.3 64 0.0014 17.5 1.7 18 129-146 11-28 (76)
304 PRK13654 magnesium-protoporphy 25.3 2.3E+02 0.005 20.5 4.6 90 37-132 35-126 (355)
305 TIGR02029 AcsF magnesium-proto 25.2 1.6E+02 0.0035 20.9 3.9 90 37-132 25-116 (337)
306 PF13624 SurA_N_3: SurA N-term 25.0 1.3E+02 0.0028 18.2 3.3 20 109-128 92-111 (154)
307 PRK04158 transcriptional repre 24.6 1.1E+02 0.0023 21.1 2.9 49 4-58 179-227 (256)
308 KOG4403|consensus 24.6 3.1E+02 0.0067 20.7 5.4 59 11-73 68-127 (575)
309 PF10437 Lip_prot_lig_C: Bacte 24.2 1.3E+02 0.0029 16.3 4.8 42 103-146 44-86 (86)
310 smart00389 HOX Homeodomain. DN 23.8 1E+02 0.0022 14.7 6.1 45 4-55 6-50 (56)
311 PF13592 HTH_33: Winged helix- 23.6 1.1E+02 0.0025 15.3 3.6 32 26-57 3-35 (60)
312 PHA02771 hypothetical protein; 23.6 1.5E+02 0.0033 16.7 4.0 10 118-127 33-42 (90)
313 cd08313 Death_TNFR1 Death doma 23.6 1.4E+02 0.003 16.3 3.2 24 101-126 9-32 (80)
314 PF05383 La: La domain; Inter 23.4 80 0.0017 16.2 1.8 19 125-143 20-38 (61)
315 PF05256 UPF0223: Uncharacteri 23.3 1.2E+02 0.0026 17.0 2.5 52 6-57 12-64 (88)
316 PF12949 HeH: HeH/LEM domain; 23.1 71 0.0015 14.4 1.3 18 100-117 3-20 (35)
317 PF10982 DUF2789: Protein of u 23.0 1.4E+02 0.0031 16.1 2.7 30 105-134 7-36 (74)
318 PF09682 Holin_LLH: Phage holi 23.0 1.7E+02 0.0036 16.9 3.9 40 90-129 57-100 (108)
319 PF13373 DUF2407_C: DUF2407 C- 23.0 86 0.0019 19.3 2.1 20 2-21 8-27 (140)
320 PRK10945 gene expression modul 22.9 1.4E+02 0.003 16.0 3.6 40 65-112 7-46 (72)
321 KOG0113|consensus 22.6 2.8E+02 0.0062 19.7 4.6 39 90-128 85-124 (335)
322 PF07492 Trehalase_Ca-bi: Neut 22.6 20 0.00044 15.5 -0.5 16 125-140 4-19 (30)
323 COG1859 KptA RNA:NAD 2'-phosph 22.6 2.3E+02 0.0049 18.9 4.0 38 94-131 53-90 (211)
324 PHA02681 ORF089 virion membran 22.6 1.3E+02 0.0027 16.7 2.4 17 4-20 51-67 (92)
325 PF08044 DUF1707: Domain of un 22.5 1.2E+02 0.0026 15.1 2.7 29 98-126 21-49 (53)
326 PF08730 Rad33: Rad33; InterP 22.4 2.2E+02 0.0048 18.2 11.7 42 4-46 7-48 (170)
327 PF10281 Ish1: Putative stress 22.2 96 0.0021 13.9 3.5 15 102-116 5-19 (38)
328 COG0721 GatC Asp-tRNAAsn/Glu-t 22.1 1.7E+02 0.0036 16.6 3.9 29 100-128 2-30 (96)
329 PF04361 DUF494: Protein of un 22.0 2.1E+02 0.0047 17.9 5.6 42 86-129 5-47 (155)
330 cd07357 HN_L-whirlin_R2_like S 21.9 1.2E+02 0.0025 16.7 2.2 29 117-145 16-44 (81)
331 PF10548 P22_AR_C: P22AR C-ter 21.8 1.5E+02 0.0032 16.0 2.7 42 2-46 5-46 (74)
332 PF13720 Acetyltransf_11: Udp 21.8 1.6E+02 0.0034 16.2 5.1 33 4-39 27-59 (83)
333 PF08006 DUF1700: Protein of u 21.6 1.5E+02 0.0032 18.8 3.1 29 28-56 1-29 (181)
334 KOG4629|consensus 21.0 3.4E+02 0.0073 22.0 5.2 55 50-112 407-461 (714)
335 cd01047 ACSF Aerobic Cyclase S 21.0 3.2E+02 0.0069 19.5 5.1 89 38-132 16-106 (323)
336 KOG4629|consensus 20.9 3.3E+02 0.007 22.1 5.1 56 84-146 404-459 (714)
337 PRK00441 argR arginine repress 20.5 2.3E+02 0.0049 17.6 4.2 33 98-130 16-48 (149)
338 cd00076 H4 Histone H4, one of 20.5 1.7E+02 0.0038 16.2 7.4 66 43-116 13-81 (85)
339 COG4476 Uncharacterized protei 20.5 1.7E+02 0.0038 16.3 3.6 52 6-57 12-64 (90)
340 PF14848 HU-DNA_bdg: DNA-bindi 20.3 2.1E+02 0.0045 17.0 4.4 33 24-56 25-57 (124)
341 cd07909 YciF YciF bacterial st 20.2 1.4E+02 0.0031 18.5 2.7 21 6-26 45-65 (147)
342 PRK09389 (R)-citramalate synth 20.2 3E+02 0.0065 21.0 4.8 46 30-75 320-367 (488)
343 PF08485 Polysacc_syn_2C: Poly 20.1 1.3E+02 0.0029 14.7 2.3 22 19-40 23-44 (48)
344 PRK12821 aspartyl/glutamyl-tRN 20.1 3.9E+02 0.0084 20.3 5.1 53 4-56 357-417 (477)
345 cd03035 ArsC_Yffb Arsenate Red 20.0 1.2E+02 0.0026 17.4 2.2 12 101-112 72-83 (105)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=100.00 E-value=2e-32 Score=165.53 Aligned_cols=145 Identities=52% Similarity=0.888 Sum_probs=139.6
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCC
Q psy12851 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPD 81 (148)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 81 (148)
.++++++++++|++.|..+|++++|.|+..+|..+++.+|+.++.+++.+++..++. +++.|+|.+|+.++........
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 467999999999999999999999999999999999999999999999999999998 8999999999999998887788
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+++..+|+.||.+++|.|+..+++.++..+|..+++++++.+++.++.+++|.|+|++|.+.+.
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~ 155 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIK 155 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHh
Confidence 889999999999999999999999999999999999999999999999999999999999998764
No 2
>KOG0027|consensus
Probab=99.97 E-value=4.1e-29 Score=153.59 Aligned_cols=143 Identities=53% Similarity=0.953 Sum_probs=134.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCC---
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPD--- 81 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~--- 81 (148)
++.++...+..+|..+|++++|+|+..++..+++.+|..++..++..++..++.+++|.|++.+|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~ 81 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE 81 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999999999986554333
Q ss_pred -CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 82 -STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 82 -~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+.++.+|+.+|.+++|.|+..+|+.++..+|.+.+.+++..+++.+|.+++|.|+|.+|++++.
T Consensus 82 ~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 82 ASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred ccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 245899999999999999999999999999999999999999999999999999999999999875
No 3
>PTZ00184 calmodulin; Provisional
Probab=99.96 E-value=6.5e-27 Score=143.72 Aligned_cols=147 Identities=66% Similarity=1.075 Sum_probs=136.3
Q ss_pred CCccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCC
Q psy12851 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTP 80 (148)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~ 80 (148)
|+..++++++..++..|..+|++++|.|+..+|..++..++..+..+.+..++..++.+++|.|+|++|+..+.......
T Consensus 1 ~~~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT 80 (149)
T ss_pred CCCccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC
Confidence 57789999999999999999999999999999999999999888999999999999999999999999999987654444
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.....+..+|..+|.+++|.|+.++|..++...+..++..++..++..+|.+++|.|+|++|..++.
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4567789999999999999999999999999999889999999999999999999999999998875
No 4
>KOG0028|consensus
Probab=99.96 E-value=4.4e-27 Score=139.68 Aligned_cols=146 Identities=43% Similarity=0.746 Sum_probs=139.2
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCC
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDS 82 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 82 (148)
..+++++.++++..|..+|++++|+|+..+|.-+++++|+.+..+++.+++..+++++.|.|+|++|...+.........
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt 104 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDT 104 (172)
T ss_pred ccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCc
Confidence 35788999999999999999999999999999999999999999999999999999999999999999998887777778
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhcC
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~ 148 (148)
.+++..+|+.+|.+++|.|+..+|+.+...+|.+++++++..++..+|.+++|.|+-++|..++++
T Consensus 105 ~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 105 KEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999998763
No 5
>PTZ00183 centrin; Provisional
Probab=99.95 E-value=3.1e-26 Score=142.08 Aligned_cols=145 Identities=43% Similarity=0.748 Sum_probs=134.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCC
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDS 82 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 82 (148)
.+++++++..+..+|..+|++++|.|+..+|..+++.+|..++.+.+..++..++.+++|.|+|.+|+..+.........
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~ 88 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDP 88 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCc
Confidence 46789999999999999999999999999999999999988899999999999999999999999999987765444455
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.+.++.+|..+|.+++|.|+..+|..++...|..+++.++..++..++.+++|.|++++|..++.
T Consensus 89 ~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 153 (158)
T PTZ00183 89 REEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMK 153 (158)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHh
Confidence 67899999999999999999999999999999999999999999999999999999999999875
No 6
>KOG0031|consensus
Probab=99.94 E-value=1.4e-24 Score=128.24 Aligned_cols=141 Identities=37% Similarity=0.653 Sum_probs=132.8
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCC
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDS 82 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 82 (148)
+.+++.|++++++.|+.+|.|++|.|..++++..+.++|..++.+++..++.. ..|.|+|.-|+.++...+..-..
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCH
Confidence 35789999999999999999999999999999999999999999999999864 46899999999999988877777
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
++.+..+|..+|++++|+|..+.++.+|...|..+++++++.+++.+..+..|.++|..|+.++.
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998875
No 7
>KOG0034|consensus
Probab=99.90 E-value=7.1e-22 Score=123.61 Aligned_cols=140 Identities=28% Similarity=0.576 Sum_probs=116.3
Q ss_pred cccHHHHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCc-cchHHHHHHHHhhcCCCC
Q psy12851 4 QLTEEQINDFKEAFSFFNRQ-GDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT-IDFPEFLTVMARKLNTPD 81 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~ef~~~~~~~~~~~~ 81 (148)
.++..++.++...|.+++.+ +.|+|+.+||..+. .+..++- ..+++..++.+++|. |++++|++.+........
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~---~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~ 101 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPL---ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKAS 101 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcH---HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCcc
Confidence 48899999999999999999 99999999999987 3333333 346777777777777 999999999997766665
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCC--HHH----HHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLS--EDE----VNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-~~~~--~~~----~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+.++.+|+.||.+++|.|+.+++.+++..+- ...+ ++. ++..+..+|.+++|.|+++||.+++.
T Consensus 102 ~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 102 KREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 666999999999999999999999999998863 3344 333 55668889999999999999999874
No 8
>KOG0030|consensus
Probab=99.89 E-value=1.2e-21 Score=114.10 Aligned_cols=143 Identities=40% Similarity=0.711 Sum_probs=127.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcC--CCCccchHHHHHHHHhhcC--C
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVN--QRGTIDFPEFLTVMARKLN--T 79 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~~~~~~~--~ 79 (148)
..++++..+++++|..+|..++|.|+..+...+|+.+|.+++.+++.+....+.++ +-.+++|++|+..+..... .
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccc
Confidence 35778889999999999999999999999999999999999999999999888766 3478999999998876543 3
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 80 PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
....+.+...++.+|++++|.|...+++.+|..+|..+++++++.++.-.. |.+|.|.|+.|++.+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHHh
Confidence 445678888999999999999999999999999999999999999987655 8899999999998764
No 9
>KOG0037|consensus
Probab=99.86 E-value=8.1e-20 Score=114.33 Aligned_cols=130 Identities=28% Similarity=0.427 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCC-CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL-TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQ 88 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 88 (148)
-..+...|...|+++.|.|+.+|+..+|...+. ..+.+-++.+...+|.+..|+|++.||..++... ..++.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~Wr~ 128 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQWRN 128 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHHHH
Confidence 347888999999999999999999999986655 4567778889999999999999999999999853 67999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 89 AFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
+|+.+|.|++|.|+..||+++|..+|..++++-.+.+++.+|..++|.|.+++|++++
T Consensus 129 vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 129 VFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHH
Confidence 9999999999999999999999999999999999999999998889999999999875
No 10
>KOG0044|consensus
Probab=99.83 E-value=4.9e-19 Score=110.99 Aligned_cols=142 Identities=23% Similarity=0.432 Sum_probs=116.8
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC-CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCC
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG-LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPD 81 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~ 81 (148)
+++++.++..+++-|..-. .+|.++..+|+.+++.+. ..-+..-...+|+.+|.+++|.|++.||+..++... ...
T Consensus 21 t~f~~~ei~~~Yr~Fk~~c--P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~-rGt 97 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNEC--PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTS-RGT 97 (193)
T ss_pred cCCCHHHHHHHHHHhcccC--CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHc-CCc
Confidence 3567777777777776643 479999999999999875 345556678899999999999999999999988544 355
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTL----GE-------RLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~----~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+.++.+|+.+|.+++|.|+..|+..++.+. +. ....+.+..+|+.+|.|++|.||++||+...+
T Consensus 98 ~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 66788999999999999999999999988763 31 12456788999999999999999999998654
No 11
>KOG0036|consensus
Probab=99.83 E-value=8.5e-19 Score=118.78 Aligned_cols=136 Identities=22% Similarity=0.401 Sum_probs=126.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCC-CCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCH
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLT-PTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDST 83 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~ 83 (148)
.+++.-.+++.+|..+|.+++|.++..++.+.+..+..+ +..+....+++.+|.+.+|+|+|.+|.+.+.. .+
T Consensus 8 ~~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~E 81 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------KE 81 (463)
T ss_pred CcHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------hH
Confidence 456677889999999999999999999999999999887 77777889999999999999999999999984 35
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
..+..+|..+|.+.+|.|+..|+.+.|+.+|.++++++...++++.|+++++.|+++||.+.+
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ 144 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHL 144 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhh
Confidence 678999999999999999999999999999999999999999999999999999999998765
No 12
>PLN02964 phosphatidylserine decarboxylase
Probab=99.63 E-value=2.8e-14 Score=103.93 Aligned_cols=104 Identities=16% Similarity=0.360 Sum_probs=93.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC-CCCCHHH---HHHHHHHhCcCCCCccchHHHHHHHHhhcCC
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG-LTPTEAE---LLDLIREIDVNQRGTIDFPEFLTVMARKLNT 79 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~---~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~ 79 (148)
.++..|++++++.|..+|++++|.+ +..+++.+| ..++..+ +..++..+|.+++|.|+++||+.++... ..
T Consensus 136 ~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-g~ 210 (644)
T PLN02964 136 DFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-GN 210 (644)
T ss_pred hccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-cc
Confidence 5678899999999999999999997 788888899 5888887 7999999999999999999999999854 34
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 80 PDSTEEIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
....+++..+|+.+|++++|.|+.+||..++..
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 456778999999999999999999999999987
No 13
>KOG4223|consensus
Probab=99.56 E-value=6.3e-14 Score=92.85 Aligned_cols=136 Identities=23% Similarity=0.349 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCC-CHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCC----CCCH
Q psy12851 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP-TEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNT----PDST 83 (148)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~----~~~~ 83 (148)
.+.+-++.|+..|.|++|.+|.+||..+|.--.++. ..-.|..-+..+|.|++|.|+++||+.-+-..... .-..
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~ 240 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVL 240 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccc
Confidence 445668899999999999999999999875544443 33346778889999999999999999877654331 1112
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
.+-.+.+...|.|++|+++.+|++..+...+......+...++...|.|++|++|++|.+.
T Consensus 241 ~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 241 TEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred ccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 3455788888999999999999998887777777888999999999999999999999764
No 14
>KOG0037|consensus
Probab=99.55 E-value=1.9e-13 Score=86.06 Aligned_cols=92 Identities=27% Similarity=0.435 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQA 89 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (148)
+.+|+.+|..+|+|++|.|+..||.++|..+|+.++.+....+++.++..++|.|.|++|+.+|..+ ..+..+
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L-------~~lt~~ 195 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL-------QRLTEA 195 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH-------HHHHHH
Confidence 4667888888888888888888888888888888888888888888887778888888888888754 467888
Q ss_pred HHhhcCCCCCcc--cHHHHHH
Q psy12851 90 FQVFDKHKQGYI--CADELRH 108 (148)
Q Consensus 90 f~~~d~~~~g~I--~~~e~~~ 108 (148)
|+..|++..|.| +.++|.+
T Consensus 196 Fr~~D~~q~G~i~~~y~dfl~ 216 (221)
T KOG0037|consen 196 FRRRDTAQQGSITISYDDFLQ 216 (221)
T ss_pred HHHhccccceeEEEeHHHHHH
Confidence 888888888874 4445544
No 15
>KOG0027|consensus
Probab=99.55 E-value=1.9e-13 Score=84.09 Aligned_cols=101 Identities=26% Similarity=0.362 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC-----CHH
Q psy12851 46 EAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERL-----SED 120 (148)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~-----~~~ 120 (148)
..++..+|..+|.+++|.|+..++..+++..- .......+..++..+|.+++|.|+.++|..++...+... +.+
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 35678899999999999999999999998554 445678899999999999999999999999998865432 355
Q ss_pred HHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 121 EVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 121 ~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
++..+|+.+|.+++|.||..++..+|.
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~ 112 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLT 112 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHH
Confidence 999999999999999999999998875
No 16
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.54 E-value=4.4e-14 Score=78.67 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=59.4
Q ss_pred HHHHHHHHhhcC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDK-HKQGYICADELRHVMTT-LGERLSE-DEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~-~~~g~I~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+..+|..||+ +++|.|+..||+.++.. +|..++. +++..+++.+|.|++|.|+|+||+.++.
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~ 74 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIG 74 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 568889999999 99999999999999998 8877887 9999999999999999999999998864
No 17
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.53 E-value=7.2e-14 Score=74.18 Aligned_cols=61 Identities=41% Similarity=0.908 Sum_probs=53.7
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH----HHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE----VNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
++.+|+.+|.+++|.|+.+||..++..++...++.. +..+++.+|.+++|.|+++||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 678999999999999999999999999987665554 4555999999999999999999874
No 18
>KOG4223|consensus
Probab=99.52 E-value=2.1e-13 Score=90.44 Aligned_cols=138 Identities=18% Similarity=0.290 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC------CCCC
Q psy12851 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN------TPDS 82 (148)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~------~~~~ 82 (148)
...++..++.++|.+++|.|+..++...+..........+..+-|..++.+.+|.|+|+++......... ....
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4467889999999999999999999998877656677777888899999999999999999887664211 1111
Q ss_pred -------HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 83 -------TEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 83 -------~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
...-..-|+..|.|++|.++++||..++..-- ..+.+-.+..-+...|+|++|.|+++||+.-+
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~ 226 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDL 226 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHH
Confidence 12334569999999999999999999997543 34666778888999999999999999998643
No 19
>KOG0044|consensus
Probab=99.51 E-value=1.2e-12 Score=82.39 Aligned_cols=119 Identities=19% Similarity=0.309 Sum_probs=100.7
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCC-CCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHH
Q psy12851 27 RIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ-RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADE 105 (148)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e 105 (148)
.++...+..+... -..+..++..+++.+-.+. +|.++..+|..++...............+|+.+|.+++|.|+..|
T Consensus 8 ~~~~~~~e~l~~~--t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~E 85 (193)
T KOG0044|consen 8 KLQPESLEQLVQQ--TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLE 85 (193)
T ss_pred cCCcHHHHHHHHh--cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHH
Confidence 3444555554433 4678899999999997665 899999999999998777677778899999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 106 LRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 106 ~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
|...+.-+.....++-+..+++.+|.|++|.|+++|++++++
T Consensus 86 fi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~ 127 (193)
T KOG0044|consen 86 FICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQ 127 (193)
T ss_pred HHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHH
Confidence 999888877777888889999999999999999999999875
No 20
>KOG0038|consensus
Probab=99.51 E-value=1.1e-12 Score=77.59 Aligned_cols=139 Identities=24% Similarity=0.455 Sum_probs=102.6
Q ss_pred ccHHHHHHHHHHHHHhcCCC-----------CCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 5 LTEEQINDFKEAFSFFNRQG-----------DGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~-----------~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
++..++.++...|..+.++- .-.++.+.+.+ +..+.-++... ++...+..+|.|.+++++|+..+
T Consensus 22 FtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~k-MPELkenpfk~---ri~e~FSeDG~GnlsfddFlDmf 97 (189)
T KOG0038|consen 22 FTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEK-MPELKENPFKR---RICEVFSEDGRGNLSFDDFLDMF 97 (189)
T ss_pred ccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhh-ChhhhcChHHH---HHHHHhccCCCCcccHHHHHHHH
Confidence 56778888888888876531 12344444443 33344444444 44555567899999999999998
Q ss_pred HhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHH----HHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 74 ARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLSEDEV----NEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 74 ~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
+.....-..+-.+..+|+.+|-++++.|...++...+..+. ..++++++ +.++..+|.|++|++++.+|..++.
T Consensus 98 SV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ 176 (189)
T KOG0038|consen 98 SVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVIL 176 (189)
T ss_pred HHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 87655444555678899999999999999999999998864 45777764 4567889999999999999988653
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=2.1e-12 Score=78.82 Aligned_cols=98 Identities=23% Similarity=0.286 Sum_probs=87.1
Q ss_pred HHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q psy12851 48 ELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLSEDEVNEMI 126 (148)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~ 126 (148)
++...|..+|++++|.|++.++..+++ .+........+..++..+|. +.|.|+..+|..+|...- ...+.+++..+|
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr-~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF 98 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILR-SLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAF 98 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHH-HcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 356788888999999999999999998 55666677899999999999 999999999999997754 566799999999
Q ss_pred HhhCcCCCCcccHHHHHHHhc
Q psy12851 127 QEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~ 147 (148)
+.+|.|++|.|+..++..+++
T Consensus 99 ~~fD~d~dG~Is~~eL~~vl~ 119 (160)
T COG5126 99 KLFDKDHDGYISIGELRRVLK 119 (160)
T ss_pred HHhCCCCCceecHHHHHHHHH
Confidence 999999999999999998875
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.48 E-value=4.1e-13 Score=74.88 Aligned_cols=64 Identities=17% Similarity=0.478 Sum_probs=59.2
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFD-KHKQG-YICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d-~~~~g-~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+..+|..+| ++++| .|+.++|+.+|+. +|..++++++..+++.+|.|++|.|+|++|+.++.
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~ 78 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVA 78 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 46889999998 79999 6999999999999 88888999999999999999999999999998764
No 23
>KOG0377|consensus
Probab=99.48 E-value=9.9e-13 Score=90.66 Aligned_cols=136 Identities=21% Similarity=0.401 Sum_probs=106.1
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCC---------
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRF-LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNT--------- 79 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~--------- 79 (148)
...+..-|.++|+..+|+|+..+++.++.. .|+.++.--+.- .....+.+|.|.|......+......
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~--kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRP--KLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhh--hccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 345788899999999999999999998876 467776544432 23345667889988877665431110
Q ss_pred --CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 80 --PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL----GERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 80 --~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
......+..+|+.+|.|++|.|+.+||+++++-+ ...++.+++..+.+.+|.|++|.|++.||+++++
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 0112457788999999999999999999998765 4568899999999999999999999999999864
No 24
>PTZ00183 centrin; Provisional
Probab=99.47 E-value=4e-12 Score=78.68 Aligned_cols=100 Identities=27% Similarity=0.340 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHH
Q psy12851 47 AELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL-GERLSEDEVNEM 125 (148)
Q Consensus 47 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~ 125 (148)
.++..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+.++|..++... ....+...+..+
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~ 95 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKA 95 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 346778999999999999999999988744 323456789999999999999999999999987654 344567789999
Q ss_pred HHhhCcCCCCcccHHHHHHHhc
Q psy12851 126 IQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 126 ~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
|+.+|.+++|.|+..+|..++.
T Consensus 96 F~~~D~~~~G~i~~~e~~~~l~ 117 (158)
T PTZ00183 96 FRLFDDDKTGKISLKNLKRVAK 117 (158)
T ss_pred HHHhCCCCCCcCcHHHHHHHHH
Confidence 9999999999999999998764
No 25
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.46 E-value=4e-13 Score=71.27 Aligned_cols=62 Identities=39% Similarity=0.683 Sum_probs=51.7
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHH----HHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 12 DFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAE----LLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
+++++|..+|++++|+|+..||..++..++...+... +..+++.+|.+++|.|++.||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4788999999999999999999999999887665444 4555888888888889888888764
No 26
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.44 E-value=1.3e-12 Score=72.84 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHH-cCCCCCH-HHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 7 EEQINDFKEAFSFFNR-QGDGRIPIHELGTVMRF-LGLTPTE-AELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~~~g~i~~~e~~~~l~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
+..+..+..+|+.+|+ +++|+|+..+|+.++.. +|..++. +++..+++.+|.+++|.|+|+||+.++...
T Consensus 4 E~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 3457789999999999 99999999999999998 8877777 899999999999999999999999888753
No 27
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.41 E-value=4.1e-12 Score=70.86 Aligned_cols=69 Identities=20% Similarity=0.396 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhc-CCCCC-CcCHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 8 EQINDFKEAFSFFN-RQGDG-RIPIHELGTVMRF-----LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 8 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
..+..+.++|..+| ++++| .|+..+|+.+++. +|...+.+++..+++.+|.+++|.|+|.+|+.++...
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678999999998 79999 5999999999998 8888999999999999999999999999999887643
No 28
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.41 E-value=4.5e-12 Score=72.16 Aligned_cols=70 Identities=17% Similarity=0.314 Sum_probs=64.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
.+|.+++..+..+|..+|++++|.|+..++..+++..+ .+.+++..++..++.+++|.|++++|+.++..
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 47889999999999999999999999999999999865 67889999999999999999999999988764
No 29
>PTZ00184 calmodulin; Provisional
Probab=99.40 E-value=1.6e-11 Score=75.19 Aligned_cols=99 Identities=25% Similarity=0.319 Sum_probs=82.8
Q ss_pred HHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHH
Q psy12851 48 ELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL-GERLSEDEVNEMI 126 (148)
Q Consensus 48 ~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~-~~~~~~~~~~~~~ 126 (148)
.+...|..+|.+++|.|++.+|..++... ......+.+..+|..+|.+++|.|+.++|..++... ........+..++
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F 90 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSL-GQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAF 90 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHh-CCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 35678888999999999999999988643 333346789999999999999999999999998765 3334567789999
Q ss_pred HhhCcCCCCcccHHHHHHHhc
Q psy12851 127 QEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+|.+++|.|+.++|..++.
T Consensus 91 ~~~D~~~~g~i~~~e~~~~l~ 111 (149)
T PTZ00184 91 KVFDRDGNGFISAAELRHVMT 111 (149)
T ss_pred HhhCCCCCCeEeHHHHHHHHH
Confidence 999999999999999988763
No 30
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.36 E-value=6e-12 Score=71.35 Aligned_cols=64 Identities=25% Similarity=0.540 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDK-HK-QGYICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~-~~-~g~I~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+..+|..+|. ++ +|.|+..|++.++.. +|..++.+++..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 468889999997 87 699999999999986 46678999999999999999999999999998764
No 31
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.35 E-value=9.6e-12 Score=70.25 Aligned_cols=65 Identities=28% Similarity=0.587 Sum_probs=57.2
Q ss_pred HHHHHHHHHhhc-CCCCC-cccHHHHHHHHHH-hC----CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFD-KHKQG-YICADELRHVMTT-LG----ERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d-~~~~g-~I~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.+.++.+|..+| .+++| .|+..+++.+|.. +| ..++++++..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~ 79 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVA 79 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 457889999997 99999 5999999999986 44 346889999999999999999999999998764
No 32
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.34 E-value=1.2e-11 Score=69.02 Aligned_cols=64 Identities=19% Similarity=0.522 Sum_probs=56.9
Q ss_pred HHHHHHHHhhcC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDK-HK-QGYICADELRHVMTT---LGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~-~~-~g~I~~~e~~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+-.+|..++. ++ +|.|+.+||+.++.. +|.+++++++..+++.+|.+++|.|+|++|+.++.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~ 78 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLG 78 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Confidence 356678999997 66 899999999999973 68889999999999999999999999999998764
No 33
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.34 E-value=6.2e-12 Score=63.96 Aligned_cols=51 Identities=39% Similarity=0.819 Sum_probs=47.9
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 97 KQGYICADELRHVMTTLGER-LSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 97 ~~g~I~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.+|.|+.++|+.++..+|.. ++++++..++..+|.+++|.|+|+||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 36999999999999888999 9999999999999999999999999999875
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.34 E-value=2.2e-11 Score=67.95 Aligned_cols=70 Identities=20% Similarity=0.449 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhcC-CC-CCCcCHHHHHHHHH---HcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 7 EEQINDFKEAFSFFNR-QG-DGRIPIHELGTVMR---FLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 7 ~~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
++.+..+..+|+++|. ++ +|+|+..||+.++. .+|...+.+++..+++.+|.+++|.|+|.+|+.++...
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4567789999999997 66 89999999999996 36888999999999999999999999999999888753
No 35
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.33 E-value=1.1e-11 Score=70.00 Aligned_cols=64 Identities=17% Similarity=0.421 Sum_probs=55.2
Q ss_pred HHHHHHHHhhc-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFD-KHKQG-YICADELRHVMTTL-----GERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d-~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+..+|..+| .+++| .|+..||+.++... +...++.++..+++.+|.+++|.|+|+||+.++.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 46788899999 78998 59999999999762 3345788999999999999999999999998874
No 36
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.32 E-value=1.2e-11 Score=65.73 Aligned_cols=59 Identities=29% Similarity=0.509 Sum_probs=54.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 87 KQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 87 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
+.+|..+|++++|.|+.+|+..++...| .+.+++..++..++.+++|.|++++|+.++.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 5689999999999999999999999887 4888999999999999999999999998763
No 37
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.30 E-value=2.7e-11 Score=68.94 Aligned_cols=63 Identities=22% Similarity=0.479 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
...+..+|..+|.+++|.|+.++++.++...+ ++.+++..++..+|.+++|.|++++|+.++.
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~ 71 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMH 71 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Confidence 45788999999999999999999999999876 7888999999999999999999999998764
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.30 E-value=5.5e-11 Score=67.12 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhc-CCCCCC-cCHHHHHHHHHH-cC----CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 8 EQINDFKEAFSFFN-RQGDGR-IPIHELGTVMRF-LG----LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 8 ~~~~~l~~~f~~~d-~~~~g~-i~~~e~~~~l~~-~~----~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
..+..+.++|..+| .+++|+ |+..++..++.. +| ..++.+++..+++.+|.+++|.|+|.+|+.++...
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 34577999999997 999995 999999999975 43 45688999999999999999999999999887753
No 39
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.30 E-value=5.7e-11 Score=67.10 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhc-CCCCC-CcCHHHHHHHHHH-c----CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 8 EQINDFKEAFSFFN-RQGDG-RIPIHELGTVMRF-L----GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 8 ~~~~~l~~~f~~~d-~~~~g-~i~~~e~~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
..+..+.++|+.+| ++++| +|+..||+.++.. + +...+..++..+++.+|.+++|.|+|.||+.++...
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 45678899999998 78998 5999999999966 2 344578899999999999999999999999988754
No 40
>KOG0028|consensus
Probab=99.29 E-value=1.5e-10 Score=69.66 Aligned_cols=99 Identities=27% Similarity=0.406 Sum_probs=85.6
Q ss_pred HHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HhCCCCCHHHHHHH
Q psy12851 47 AELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT-TLGERLSEDEVNEM 125 (148)
Q Consensus 47 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~-~~~~~~~~~~~~~~ 125 (148)
+++...|..+++++.|.|++.++...+. .+......+.+..+..-+|+++.|.|+.++|+.++. .++..-+.+++..+
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmr-alGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMR-ALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHH-HcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 5688899999999999999999976666 344445567889999999999999999999999974 46766699999999
Q ss_pred HHhhCcCCCCcccHHHHHHHh
Q psy12851 126 IQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 126 ~~~~d~~~~g~i~~~ef~~~l 146 (148)
|+.+|.|++|.|++.+|..+.
T Consensus 112 frl~D~D~~Gkis~~~lkrva 132 (172)
T KOG0028|consen 112 FRLFDDDKTGKISQRNLKRVA 132 (172)
T ss_pred HHcccccCCCCcCHHHHHHHH
Confidence 999999999999999998764
No 41
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.29 E-value=4.5e-11 Score=66.96 Aligned_cols=70 Identities=21% Similarity=0.441 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhcC--CCCCCcCHHHHHHHHHH-cCCC----CCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 7 EEQINDFKEAFSFFNR--QGDGRIPIHELGTVMRF-LGLT----PTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 7 ~~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
++++..++.+|..+|+ +++|.|+..++..++.. +|.. .+.+++..++..++.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 5678889999999999 89999999999999875 4543 458999999999999999999999999988753
No 42
>PLN02964 phosphatidylserine decarboxylase
Probab=99.29 E-value=4.9e-11 Score=87.36 Aligned_cols=119 Identities=16% Similarity=0.351 Sum_probs=88.8
Q ss_pred CCcCHHHHHHHHHH--cC-CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHH--HHHHHHHhhcCCCCCc
Q psy12851 26 GRIPIHELGTVMRF--LG-LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTE--EIKQAFQVFDKHKQGY 100 (148)
Q Consensus 26 g~i~~~e~~~~l~~--~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~--~~~~~f~~~d~~~~g~ 100 (148)
..++.+++...... .. .....+++...|..+|++++|.+ +......+.. ..+...+ .+..+|..+|.+++|.
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i-Lg~ilrslG~--~~pte~e~~fi~~mf~~~D~DgdG~ 195 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV-VGSIFVSCSI--EDPVETERSFARRILAIVDYDEDGQ 195 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC-HHHHHHHhCC--CCCCHHHHHHHHHHHHHhCCCCCCe
Confidence 45666666653322 01 12233557788999999999987 3333333321 1233332 3899999999999999
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
|+.+||..++..++...+++++..+|+.+|.|++|.|+++||..++.
T Consensus 196 IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~ 242 (644)
T PLN02964 196 LSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLA 242 (644)
T ss_pred EcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHH
Confidence 99999999999988778999999999999999999999999998875
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.28 E-value=5.6e-11 Score=67.36 Aligned_cols=68 Identities=19% Similarity=0.412 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcC-CC-CCCcCHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 8 EQINDFKEAFSFFNR-QG-DGRIPIHELGTVMRF-----LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 8 ~~~~~l~~~f~~~d~-~~-~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
.....+..+|..+|. ++ +|.|+..++..++.. +|..++.+++..++..++.+++|.|+|.+|+.++..
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 345778999999997 87 699999999999876 567889999999999999999999999999988764
No 44
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.28 E-value=3.4e-11 Score=67.48 Aligned_cols=65 Identities=22% Similarity=0.541 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhcC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFDK--HKQGYICADELRHVMTT-LGER----LSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d~--~~~g~I~~~e~~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
...+..+|..+|+ +++|.|+..+|..++.. +|.+ ++..++..++..+|.+++|.|+|++|+.++.
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 4568889999999 89999999999999976 4533 4589999999999999999999999998764
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.27 E-value=6e-11 Score=61.68 Aligned_cols=62 Identities=50% Similarity=0.952 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
+..+|..+|.+++|.|+.+++..++..++.+.+.+.+..++..++.+++|.|++++|..++.
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~~ 63 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELMA 63 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHhC
Confidence 46789999999999999999999999999999999999999999999999999999998763
No 46
>KOG2562|consensus
Probab=99.27 E-value=1.6e-10 Score=80.20 Aligned_cols=136 Identities=18% Similarity=0.271 Sum_probs=105.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh----CcCCCCccchHHHHHHHHhhcCCC
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI----DVNQRGTIDFPEFLTVMARKLNTP 80 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~ef~~~~~~~~~~~ 80 (148)
+|.++-..+...|..+|+|++|.|+.+++...- ...++.-.+.++|..+ -...+|+++|++|+.++.. ....
T Consensus 272 FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~---d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA-~e~k 347 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYG---DHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA-EEDK 347 (493)
T ss_pred eeHHHHHHHHHHHhhhccccccccCHHHHHHHh---ccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH-hccC
Confidence 345555556666999999999999999997642 2456666788899833 3345789999999999884 4445
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C--CCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTL-------G--ERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~-------~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
.....+...|+.+|.+++|.++..|++.+++.. + ..+-+..+..++.-+.+...++|++.+|..
T Consensus 348 ~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 348 DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 566789999999999999999999999987652 2 223356677788888888899999999875
No 47
>PF14658 EF-hand_9: EF-hand domain
Probab=99.26 E-value=3.4e-11 Score=62.37 Aligned_cols=60 Identities=28% Similarity=0.585 Sum_probs=56.9
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHHHhhCcCCC-CcccHHHHHHHhc
Q psy12851 88 QAFQVFDKHKQGYICADELRHVMTTLGE-RLSEDEVNEMIQEADINGD-GRINYEDFVTLMT 147 (148)
Q Consensus 88 ~~f~~~d~~~~g~I~~~e~~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~l~ 147 (148)
.+|..||+++.|.|...++..+|++++. .+++++++.+...+|+++. |.|+++.|+.+|+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4799999999999999999999999998 8999999999999999998 9999999999886
No 48
>KOG0040|consensus
Probab=99.26 E-value=3.7e-10 Score=87.60 Aligned_cols=136 Identities=25% Similarity=0.521 Sum_probs=109.6
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCC-------CHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP-------TEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
+.+|++++.++.-+|..||++.+|.++..+|..+|+.+|+.+ +.+++..++..+|++.+|.|+..+|+.++..
T Consensus 2245 ~GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2245 NGVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 467999999999999999999999999999999999999865 3447899999999999999999999999875
Q ss_pred hc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh----Cc----CCCCcccHHHHHHHh
Q psy12851 76 KL-NTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA----DI----NGDGRINYEDFVTLM 146 (148)
Q Consensus 76 ~~-~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~----d~----~~~g~i~~~ef~~~l 146 (148)
.- ......+.+..+|+.+|. +..+|+.+++.. ++|+++...++..+ ++ .-.+.+.|.+|...+
T Consensus 2325 ~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~-------~ltreqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2325 KETENILSSEEIEDAFRALDA-GKPYVTKEELYQ-------NLTREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred cccccccchHHHHHHHHHhhc-CCccccHHHHHh-------cCCHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 43 234445689999999998 778899888765 35666666555544 33 223468999998754
No 49
>KOG0034|consensus
Probab=99.26 E-value=1.2e-10 Score=73.44 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=83.5
Q ss_pred HHHHHHhcCCCCCC-cCHHHHHHHHHHcCCCCCHH-HHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCC------HHH
Q psy12851 14 KEAFSFFNRQGDGR-IPIHELGTVMRFLGLTPTEA-ELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDS------TEE 85 (148)
Q Consensus 14 ~~~f~~~d~~~~g~-i~~~e~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~------~~~ 85 (148)
.+++..++++++|. |+.++|...+.-+.-..... .+..+|+.+|.+++|.|+.+++...+......... ...
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 57788889888888 99999999988765554444 78999999999999999999999998876653332 345
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTTL 113 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 113 (148)
+...|..+|.++||.|+.+||..++...
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 6678999999999999999999999754
No 50
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.25 E-value=7e-11 Score=62.69 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
+++|..+|++++|.|+..++..++..+|. +.+++..++..++.+++|.|+|.+|+..+..
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHL 61 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHH
Confidence 57899999999999999999999988764 8888999999999999999999999988764
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.21 E-value=1.8e-10 Score=64.32 Aligned_cols=64 Identities=22% Similarity=0.451 Sum_probs=54.8
Q ss_pred HHHHHHHHh-hcCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQV-FDKHKQG-YICADELRHVMTTL-----GERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~-~d~~~~g-~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+..+|.. .|.+++| .|+.+||+.++... +...++.++..+++.+|.|++|.|+|+||+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~ 79 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIG 79 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 457788998 6777876 99999999999875 3356778999999999999999999999998764
No 52
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.18 E-value=2.1e-10 Score=66.97 Aligned_cols=60 Identities=17% Similarity=0.355 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
...+..+|..+|.|++|.|+.+|+..++ .......+..++..+|.|++|.||++||...+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4578889999999999999999999877 23567788999999999999999999999876
No 53
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.18 E-value=2.6e-10 Score=59.18 Aligned_cols=61 Identities=43% Similarity=0.782 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
+..+|..+|.+++|.|+..++..++..++...+.+.+..++..++.+++|.|++.+|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.18 E-value=1.3e-10 Score=59.00 Aligned_cols=51 Identities=35% Similarity=0.603 Sum_probs=47.1
Q ss_pred CCCCcCHHHHHHHHHHcCCC-CCHHHHHHHHHHhCcCCCCccchHHHHHHHH
Q psy12851 24 GDGRIPIHELGTVMRFLGLT-PTEAELLDLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
.+|.|+.++|..++..+|.. ++.+++..++..+|.+++|.|+|.||+.++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 36899999999999888999 9999999999999999999999999998876
No 55
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.14 E-value=9.7e-10 Score=61.41 Aligned_cols=70 Identities=23% Similarity=0.392 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHH-hcCCCCC-CcCHHHHHHHHHHc-----CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 7 EEQINDFKEAFSF-FNRQGDG-RIPIHELGTVMRFL-----GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 7 ~~~~~~l~~~f~~-~d~~~~g-~i~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
+..+..+..+|+. +|++++| .|+..||..++... +......++..+++.+|.+++|.|+|+||+.++...
T Consensus 5 e~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 5 ERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3567889999999 6787876 99999999998774 335667899999999999999999999999887643
No 56
>KOG4251|consensus
Probab=99.11 E-value=5e-10 Score=72.17 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHc---CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHH
Q psy12851 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFL---GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
.-..+++.+|.+.|.+.+|+||+.++++.+..- -+.-...+-..-|+.+|++++|.|+|++|..-+.
T Consensus 98 rsrrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 98 RSRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 445779999999999999999999999977542 1223344456688999999999999999986553
No 57
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.08 E-value=1.6e-09 Score=63.31 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy12851 44 PTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVM 110 (148)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l 110 (148)
.....+...|..+|.+++|.|+..|+..+.. ......+..+|..+|.+++|.||.+||...+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l-----~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIRL-----DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHHc-----cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3444455566666666666666666555441 1223445556666666666666666666655
No 58
>PF14658 EF-hand_9: EF-hand domain
Probab=99.08 E-value=9.1e-10 Score=57.08 Aligned_cols=62 Identities=40% Similarity=0.693 Sum_probs=57.4
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHcCC-CCCHHHHHHHHHHhCcCCC-CccchHHHHHHHHhh
Q psy12851 15 EAFSFFNRQGDGRIPIHELGTVMRFLGL-TPTEAELLDLIREIDVNQR-GTIDFPEFLTVMARK 76 (148)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~i~~~ef~~~~~~~ 76 (148)
.+|..+|+++.|.|...++..+|+..+. .+.+++++.+.+.+|+++. |.|++++|+..++.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 4689999999999999999999999988 8999999999999999998 999999999988743
No 59
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.05 E-value=1.3e-09 Score=60.93 Aligned_cols=64 Identities=20% Similarity=0.518 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDKH--KQGYICADELRHVMT-TLGERLS----EDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~~--~~g~I~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+...|..++.. .+|.|+.+||+.++. .+|..++ +.++..++..+|.+++|.|+|++|+.++.
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~ 78 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVI 78 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 4566788888865 478999999999997 5565566 89999999999999999999999998764
No 60
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.03 E-value=3.6e-09 Score=59.11 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhcCC--CCCCcCHHHHHHHHH-HcCCCCC----HHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 7 EEQINDFKEAFSFFNRQ--GDGRIPIHELGTVMR-FLGLTPT----EAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 7 ~~~~~~l~~~f~~~d~~--~~g~i~~~e~~~~l~-~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
+..+..+..+|+.++.. ++|.|+..+|..++. .++..++ .+++..+++.+|.+++|.|+|++|+.++...
T Consensus 4 e~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34567888999999865 478999999999996 5555555 8999999999999999999999999888753
No 61
>KOG2643|consensus
Probab=99.01 E-value=4.1e-09 Score=72.96 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=94.0
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHc-CCCCC--HHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHH
Q psy12851 15 EAFSFFNRQGDGRIPIHELGTVMRFL-GLTPT--EAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQ 91 (148)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~ 91 (148)
--|..+|+..+|.|+..+|..++-.. +.+.. ...+.++-+.+... +..|++.||..++..... ...+..+..
T Consensus 322 lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~----l~dfd~Al~ 396 (489)
T KOG2643|consen 322 LEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNN----LNDFDIALR 396 (489)
T ss_pred HHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhh----hhHHHHHHH
Confidence 34888999888999999999976443 32222 22355566666554 556999999999875422 334445544
Q ss_pred hhcCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 92 VFDKHKQGYICADELRHVMTT-LGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 92 ~~d~~~~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.+-. ..+.|+..+|+++... .|..+++..++.+|+.||.|+||.++++||+.+++
T Consensus 397 fy~~-Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk 452 (489)
T KOG2643|consen 397 FYHM-AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMK 452 (489)
T ss_pred HHHH-cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHH
Confidence 4432 3467999999998865 57889989999999999999999999999999875
No 62
>KOG0041|consensus
Probab=98.96 E-value=6.5e-09 Score=65.04 Aligned_cols=76 Identities=24% Similarity=0.543 Sum_probs=65.3
Q ss_pred hHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q psy12851 66 FPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTL 145 (148)
Q Consensus 66 ~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (148)
|.+|..+-+. ....+...|..+|.+.||+|+..|++.+|+.+|.+-|-=-+..++++.|.|.+|+||+.+|+=+
T Consensus 87 yteF~eFsrk------qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLI 160 (244)
T KOG0041|consen 87 YTEFSEFSRK------QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLI 160 (244)
T ss_pred hhhhhHHHHH------HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHH
Confidence 6677755543 3467888999999999999999999999999998777777889999999999999999999866
Q ss_pred hc
Q psy12851 146 MT 147 (148)
Q Consensus 146 l~ 147 (148)
++
T Consensus 161 fr 162 (244)
T KOG0041|consen 161 FR 162 (244)
T ss_pred HH
Confidence 53
No 63
>KOG0036|consensus
Probab=98.92 E-value=2.6e-08 Score=68.71 Aligned_cols=96 Identities=19% Similarity=0.356 Sum_probs=83.8
Q ss_pred HHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12851 47 AELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMI 126 (148)
Q Consensus 47 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (148)
-.++.+|..+|.+++|.|++.+....+...-.+....+..+.+|+.+|.+.+|.++.+||+..+.. .+.++..+|
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~F 88 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRIF 88 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHHH
Confidence 347889999999999999999999888766555466788999999999999999999999999974 446789999
Q ss_pred HhhCcCCCCcccHHHHHHHhc
Q psy12851 127 QEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l~ 147 (148)
...|.+++|.|+..|..+.++
T Consensus 89 ~~iD~~hdG~i~~~Ei~~~l~ 109 (463)
T KOG0036|consen 89 QSIDLEHDGKIDPNEIWRYLK 109 (463)
T ss_pred hhhccccCCccCHHHHHHHHH
Confidence 999999999999999887765
No 64
>KOG0041|consensus
Probab=98.92 E-value=3.3e-08 Score=61.94 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=84.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCC-CCC
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNT-PDS 82 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~-~~~ 82 (148)
.++..++..++.+|..+|.+.+|+|+..|++.++.++|.+.+.--+..++..+|.|.+|+++|.+|+-++...... ...
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagEL~~ 171 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGELQE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhcccccc
Confidence 4688999999999999999999999999999999999999888889999999999999999999999888754331 112
Q ss_pred HHHHHHHH--HhhcCCCCCcccHHHHHHH
Q psy12851 83 TEEIKQAF--QVFDKHKQGYICADELRHV 109 (148)
Q Consensus 83 ~~~~~~~f--~~~d~~~~g~I~~~e~~~~ 109 (148)
...+..+= ...|...-|+-....|-..
T Consensus 172 ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 172 DSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred chHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 22233332 3367777777776666554
No 65
>KOG0031|consensus
Probab=98.87 E-value=2.2e-08 Score=60.11 Aligned_cols=44 Identities=32% Similarity=0.761 Sum_probs=23.1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQ 127 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (148)
++++.+|..+|+|+||.|..++++.++.++|..+++++++.|+.
T Consensus 32 qEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~ 75 (171)
T KOG0031|consen 32 QEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK 75 (171)
T ss_pred HHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44555555555555555555555555555554455444444443
No 66
>KOG0030|consensus
Probab=98.85 E-value=1.2e-08 Score=60.18 Aligned_cols=68 Identities=28% Similarity=0.579 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC--CCCcccHHHHHHHhc
Q psy12851 80 PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADIN--GDGRINYEDFVTLMT 147 (148)
Q Consensus 80 ~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~l~ 147 (148)
++...+++.+|..||..+||.|+..+.-.+++++|.++++.++...+..+..+ +-..|+|++|+.+++
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q 76 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQ 76 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999887 456789999887764
No 67
>KOG2643|consensus
Probab=98.84 E-value=8.2e-08 Score=66.73 Aligned_cols=129 Identities=20% Similarity=0.363 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHH------cCCC---------CCHHHHH--HHHHHhCcCCCCccchHHHHHHHH
Q psy12851 12 DFKEAFSFFNRQGDGRIPIHELGTVMRF------LGLT---------PTEAELL--DLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~------~~~~---------~~~~~~~--~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
.+.-.|..+|.|++|.|+.+||..+..- +|.. ....++. ....-+.+++++.+++++|+.++.
T Consensus 234 ~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 234 NFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred cceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 3456789999999999999999875532 1210 0111222 244566889999999999999998
Q ss_pred hhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-CCCHH--HHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 75 RKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE-RLSED--EVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 75 ~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~-~~~~~--~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.+ ..+..+.-|..+|+...|.|+..+|..++-.... +.... .+..+-+.++.+ +..||++||..+.
T Consensus 314 ~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff 382 (489)
T KOG2643|consen 314 NL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFF 382 (489)
T ss_pred HH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHH
Confidence 65 3466777899999988899999999998876542 22221 244555666654 6679999998764
No 68
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.81 E-value=2.3e-08 Score=57.28 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
++++++.+.+..+|..+++ ++|.|+..+...++... +++.+.+..||...|.+++|.+++.||+..+.
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 5788999999999999986 68999999999988875 57789999999999999999999999998765
No 69
>KOG1029|consensus
Probab=98.79 E-value=2.3e-07 Score=68.73 Aligned_cols=137 Identities=20% Similarity=0.392 Sum_probs=113.4
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC------
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN------ 78 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~------ 78 (148)
++.++..+-...|..+ +.+.|+|+-.+-+.++-.. .++...+..||..-|.|++|+++..||...|.....
T Consensus 10 vT~~Er~K~~~qF~~L-kp~~gfitg~qArnfflqS--~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~~ 86 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQL-KPGQGFITGDQARNFFLQS--GLPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGIQ 86 (1118)
T ss_pred cchHHHHHHHHHHhcc-CCCCCccchHhhhhhHHhc--CCChHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCCc
Confidence 5788888888889888 4588999999999987664 467788999999999999999999999877643210
Q ss_pred --------------------------------------------------------------------------------
Q psy12851 79 -------------------------------------------------------------------------------- 78 (148)
Q Consensus 79 -------------------------------------------------------------------------------- 78 (148)
T Consensus 87 lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl~ 166 (1118)
T KOG1029|consen 87 LPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPLP 166 (1118)
T ss_pred CCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred -----------------------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCC
Q psy12851 79 -----------------------TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDG 135 (148)
Q Consensus 79 -----------------------~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g 135 (148)
+....-.++.+|+.+|+..+|.++-..-+.+|...+ ++...+..++...|.|+||
T Consensus 167 ~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DG 244 (1118)
T KOG1029|consen 167 HDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDG 244 (1118)
T ss_pred CCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCC
Confidence 011123567789999999999999999999998777 6777899999999999999
Q ss_pred cccHHHHHHHh
Q psy12851 136 RINYEDFVTLM 146 (148)
Q Consensus 136 ~i~~~ef~~~l 146 (148)
+++-+||+=.+
T Consensus 245 kL~~dEfilam 255 (1118)
T KOG1029|consen 245 KLSADEFILAM 255 (1118)
T ss_pred cccHHHHHHHH
Confidence 99999997543
No 70
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.75 E-value=2.3e-08 Score=43.75 Aligned_cols=27 Identities=37% Similarity=0.646 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
++.+|+.+|+|++|.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455666666666666666666666654
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.72 E-value=2.5e-07 Score=51.37 Aligned_cols=63 Identities=21% Similarity=0.497 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTL-----GERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+-.+|..+.. +.+.++..||+.++..- +..-.+..++.+++.+|.|++|.|+|.||+.++.
T Consensus 8 ~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~ 75 (91)
T cd05024 8 EKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIA 75 (91)
T ss_pred HHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 346667888874 45799999999999652 3344688899999999999999999999998763
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.70 E-value=5.5e-07 Score=50.06 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH-----cCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRF-----LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
..+..+..+|+++. .+.+.++..||+.++.. ++-...+..+..++..+|.+++|.|+|.||+.++...
T Consensus 5 ~ai~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 5 HSMEKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999997 45679999999998854 2345567789999999999999999999999988753
No 73
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.66 E-value=3.8e-08 Score=43.05 Aligned_cols=27 Identities=41% Similarity=0.764 Sum_probs=19.7
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHH
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRF 39 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (148)
++.+|+.+|+|++|+|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 566777777777777777777777654
No 74
>KOG0751|consensus
Probab=98.66 E-value=6.2e-07 Score=63.53 Aligned_cols=106 Identities=15% Similarity=0.326 Sum_probs=78.1
Q ss_pred cHHHHHHHHHHHHHh---cCCCCCCcCHHHHHHH-HHHcCCCCCHHHHHHHHH-HhCcCCCCccchHHHHHHHHhhcCCC
Q psy12851 6 TEEQINDFKEAFSFF---NRQGDGRIPIHELGTV-MRFLGLTPTEAELLDLIR-EIDVNQRGTIDFPEFLTVMARKLNTP 80 (148)
Q Consensus 6 ~~~~~~~l~~~f~~~---d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~ef~~~~~~~~~~~ 80 (148)
...+..+++.+|.++ +.++.-+++.++|... +.-++.+...+++..+.. ..|..++|.|+|.||..+-..... +
T Consensus 28 kra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~-p 106 (694)
T KOG0751|consen 28 KRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCA-P 106 (694)
T ss_pred ccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccC-c
Confidence 334455666666554 6678889999999874 333455555566555554 446778899999999987764433 2
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
+.....+|..+|+.+.|.++.+++..++..+.
T Consensus 107 --Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~ 138 (694)
T KOG0751|consen 107 --DALFEVAFQLFDRLGNGEVSFEDVADIFGQTN 138 (694)
T ss_pred --hHHHHHHHHHhcccCCCceehHHHHHHHhccc
Confidence 45788899999999999999999999998753
No 75
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.62 E-value=4e-07 Score=52.22 Aligned_cols=63 Identities=30% Similarity=0.598 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.....+..+|...++ ++|.|+.++.+.++...+ ++.+.+..++...|.+++|.++.+||+-++
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm 69 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAM 69 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHH
Confidence 445678889999986 689999999999999887 788999999999999999999999998765
No 76
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.57 E-value=9.3e-08 Score=42.62 Aligned_cols=30 Identities=43% Similarity=0.854 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHH-HcC
Q psy12851 12 DFKEAFSFFNRQGDGRIPIHELGTVMR-FLG 41 (148)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~-~~~ 41 (148)
+++.+|..+|++++|+|+..||..++. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 564
No 77
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.57 E-value=1.5e-07 Score=41.90 Aligned_cols=30 Identities=40% Similarity=0.860 Sum_probs=24.6
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHH-HhC
Q psy12851 85 EIKQAFQVFDKHKQGYICADELRHVMT-TLG 114 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g~I~~~e~~~~l~-~~~ 114 (148)
+++.+|..+|.+++|.|+.+||+.++. ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 367889999999999999999999998 554
No 78
>KOG0169|consensus
Probab=98.54 E-value=5.4e-06 Score=61.55 Aligned_cols=137 Identities=18% Similarity=0.336 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHH
Q psy12851 7 EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEI 86 (148)
Q Consensus 7 ~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~ 86 (148)
.....-+..+|...|++++|.++..+...++..++..+....+..+++..+..+++.+.+.+|..+.......+ ++
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp----ev 207 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP----EV 207 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc----hH
Confidence 34455678899999999999999999999999999999999999999999888899999999998887554332 57
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhC--CCCCHHHHHHHHHhhCcC----CCCcccHHHHHHHhcC
Q psy12851 87 KQAFQVFDKHKQGYICADELRHVMTTLG--ERLSEDEVNEMIQEADIN----GDGRINYEDFVTLMTS 148 (148)
Q Consensus 87 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~--~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 148 (148)
..+|..+-.+ .+.++..++..++...+ .+.+......+++.+... ..+.++++.|..+|.+
T Consensus 208 ~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 208 YFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 7788887754 89999999999998864 457778888888877543 4567999999998854
No 79
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.52 E-value=1.4e-06 Score=61.19 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 79 ~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.......++.+|..+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||...++
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 344567889999999999999999999942 57889999999999999999998775
No 80
>KOG0377|consensus
Probab=98.45 E-value=1.2e-06 Score=61.45 Aligned_cols=62 Identities=29% Similarity=0.594 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHc----CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHH
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRFL----GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
++.+|+.+|+|++|.|+.+||..+..-+ ....+.+++.++-+.+|-+++|.|++.||+..+.
T Consensus 549 LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 549 LETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 4555555555555555555555544332 2344555555555555555555555555555544
No 81
>KOG0038|consensus
Probab=98.44 E-value=3.6e-06 Score=50.38 Aligned_cols=100 Identities=14% Similarity=0.254 Sum_probs=76.2
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHcCC-CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHH----HH
Q psy12851 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGL-TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEI----KQ 88 (148)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~----~~ 88 (148)
+++...+..+|.|.+|..+|..++.-+.- .+..-.+...|+.+|-++++.|.-.+....+....+..-..++. ..
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 35566777899999999999998876543 23333455677888999999999999888887766555555444 44
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh
Q psy12851 89 AFQVFDKHKQGYICADELRHVMTTL 113 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~~~ 113 (148)
+....|.+|+|.++..+|..+..+.
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHhC
Confidence 5666799999999999999988654
No 82
>KOG0046|consensus
Probab=98.43 E-value=1.7e-06 Score=61.74 Aligned_cols=74 Identities=24% Similarity=0.501 Sum_probs=65.6
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCC---CHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP---TEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
..++|++++..+.+.|...| +++|+++..++..++.+.+... ..+++..+....+.+.+|.|+|++|+..+...
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 35789999999999999999 9999999999999998876543 57889999999999999999999999976544
No 83
>KOG4666|consensus
Probab=98.39 E-value=1.2e-06 Score=59.05 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12851 47 AELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMI 126 (148)
Q Consensus 47 ~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (148)
..+..+|..+|.+++|.++|.+....+.....++.....++.+|+.|+.+.||.+...+|..+|+... ++..=.+-.++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 45678999999999999999999998888888888888999999999999999999999999997643 23444466778
Q ss_pred HhhCcCCCCcccHHHHHHHh
Q psy12851 127 QEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 127 ~~~d~~~~g~i~~~ef~~~l 146 (148)
...+...+|+|++++|.++.
T Consensus 338 ~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 338 PSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred hhhhcccCcceeHHHHHHHH
Confidence 88888999999999998864
No 84
>KOG0751|consensus
Probab=98.39 E-value=2.6e-06 Score=60.50 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=50.4
Q ss_pred CccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHH-hhCcCCCCcccHH
Q psy12851 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQ-EADINGDGRINYE 140 (148)
Q Consensus 62 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~-~~d~~~~g~i~~~ 140 (148)
..++|.+|.+++... ..+....+|+..|+.++|.|+.=+|+.++.....++....++..+- ....+...++|+.
T Consensus 162 r~~ny~~f~Q~lh~~-----~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~ 236 (694)
T KOG0751|consen 162 RHLNYAEFTQFLHEF-----QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFS 236 (694)
T ss_pred HhccHHHHHHHHHHH-----HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchH
Confidence 344555554444432 1244677899999999999999999999987765554445555444 3444555567777
Q ss_pred HHHH
Q psy12851 141 DFVT 144 (148)
Q Consensus 141 ef~~ 144 (148)
.|..
T Consensus 237 yf~a 240 (694)
T KOG0751|consen 237 YFNA 240 (694)
T ss_pred HHHH
Confidence 6653
No 85
>KOG2562|consensus
Probab=98.37 E-value=1.7e-06 Score=60.81 Aligned_cols=129 Identities=18% Similarity=0.288 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHH--HHHcCC------------CCCHHHHHHH---HHHhCcCCCCccchHHHHHHHHh
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTV--MRFLGL------------TPTEAELLDL---IREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~--l~~~~~------------~~~~~~~~~~---~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
++++|..+++.++|.|+.+++... +..+-. -.+.+-...+ |..+|.+.+|.++-++.......
T Consensus 227 i~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~ 306 (493)
T KOG2562|consen 227 IQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH 306 (493)
T ss_pred hhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc
Confidence 578899999999999999998662 222211 1111122233 56668888999999988877665
Q ss_pred hcCCCCCHHHHHHHHH----hhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q psy12851 76 KLNTPDSTEEIKQAFQ----VFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTL 145 (148)
Q Consensus 76 ~~~~~~~~~~~~~~f~----~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (148)
.+. ...+.++|+ ..-...+|.++.++|..++-++...-++.-+..+|+.+|.+++|.++..|...+
T Consensus 307 tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~f 376 (493)
T KOG2562|consen 307 TLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYF 376 (493)
T ss_pred chh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHH
Confidence 432 456788888 334457889999999999988877778888999999999999999998887554
No 86
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.35 E-value=3e-06 Score=41.63 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
++..|++.+|+.+.+.+++..+..+|+.+|.+++|.+.-+||..+++
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYK 48 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHH
Confidence 57788888888888888888888888888888888888888877654
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.33 E-value=3.2e-06 Score=41.51 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=36.8
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 28 IPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
++.+|+..+|+.++..+....+..+|..+|.+++|.+.-+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678888888888888888888888999998888899988888888764
No 88
>KOG1707|consensus
Probab=98.33 E-value=1.1e-05 Score=58.60 Aligned_cols=143 Identities=17% Similarity=0.287 Sum_probs=97.1
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHH-HHHcCCCCCHHHHHHHHHHhCcC---C--CCccchHHHHHHHHh
Q psy12851 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTV-MRFLGLTPTEAELLDLIREIDVN---Q--RGTIDFPEFLTVMAR 75 (148)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~~~ef~~~~~~ 75 (148)
.+.+.+.-++.|.++|...|.|++|.++-.|+..+ .++++.++...++..+-...+.. + ++.++...|+-+...
T Consensus 186 ~qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 186 EQELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred cccccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 45678888999999999999999999999999885 45678888888877666555322 1 334556666544322
Q ss_pred hcC-----------------------------------------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 76 KLN-----------------------------------------TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 76 ~~~-----------------------------------------~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
... .+...+.+..+|..+|.|+||.++-.|+..++...+
T Consensus 266 fiergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 266 FIERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred HHHhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 110 011135678889999999999999999999998876
Q ss_pred CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 115 ERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 115 ~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
..+--+-. ....--.+..|.++|..|+..+
T Consensus 346 ~~pW~~~~--~~~~t~~~~~G~ltl~g~l~~W 375 (625)
T KOG1707|consen 346 GSPWTSSP--YKDSTVKNERGWLTLNGFLSQW 375 (625)
T ss_pred CCCCCCCc--ccccceecccceeehhhHHHHH
Confidence 43300000 0001112368889998887754
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.32 E-value=1.2e-06 Score=36.93 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=14.3
Q ss_pred HHHHHhhcCCCCCcccHHHHHHH
Q psy12851 87 KQAFQVFDKHKQGYICADELRHV 109 (148)
Q Consensus 87 ~~~f~~~d~~~~g~I~~~e~~~~ 109 (148)
+.+|+.+|.|++|.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34566666666666666666654
No 90
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.20 E-value=1.3e-05 Score=56.52 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=52.6
Q ss_pred cCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12851 40 LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113 (148)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 113 (148)
.|.....+.+..+|+.+|.+++|.|+..||.. ...+|..+|.|++|.|+.+||...+...
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 36677888899999999999999999999842 4668999999999999999999998753
No 91
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.20 E-value=2e-06 Score=36.22 Aligned_cols=24 Identities=38% Similarity=0.797 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHH
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTV 36 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~ 36 (148)
++..|..+|.|++|.|+..||..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456777788888888888777764
No 92
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.11 E-value=1.4e-06 Score=50.89 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=45.4
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
....+...|..+|.+++|.++..|+..+...+ ...+..+..++...|.|++|.||..|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34567778999999999999999998887655 45666789999999999999999999875
No 93
>KOG0040|consensus
Probab=98.10 E-value=1.1e-05 Score=64.11 Aligned_cols=64 Identities=30% Similarity=0.562 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCC-------HHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS-------EDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.++..+|+.||.+.+|.++..+|+.+|+.+|+.++ +.++..++..+|++.+|+|+..+|+.+|-
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHH
Confidence 46778999999999999999999999999997652 34799999999999999999999999874
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.88 E-value=3.7e-06 Score=49.11 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy12851 41 GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRH 108 (148)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~ 108 (148)
....-...+.-.|..+|.+++|.++..|+..+.... ...+..++..++.+|.|+||.||..|...
T Consensus 48 ~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l---~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 48 SYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL---MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp TGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT---STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred chhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH---hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 445666777888999999999999988877766533 22344678889999999999999888753
No 95
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.81 E-value=9.9e-05 Score=40.67 Aligned_cols=62 Identities=24% Similarity=0.569 Sum_probs=47.6
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHHHhhCcC----CCCcccHHHHHHHhcC
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTTLG-E-RLSEDEVNEMIQEADIN----GDGRINYEDFVTLMTS 148 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~l~~ 148 (148)
+..+|..+.. +.+.|+.++|..+|.... . ..+.+.+..++..+.++ ..+.+++++|..+|.+
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5678888865 678889999988887653 2 35788888888887655 4788999999988854
No 96
>KOG4666|consensus
Probab=97.78 E-value=0.00015 Score=49.31 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC-CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHH
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFLG-LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQA 89 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~ 89 (148)
..+..+|..||.+++|.++..+-...+.-+. -..+...|+..|..++.+.+|.+.-.+|.-++...+.-.. -.+...
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~--l~v~~l 336 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEV--LRVPVL 336 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcce--eecccc
Confidence 5678899999999999999999888777664 4556777888999999999999998888888876655332 357778
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 90 FQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 90 f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
|..++...+|+|+.++|+++....+
T Consensus 337 f~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 337 FPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred chhhhcccCcceeHHHHHHHHHhCc
Confidence 9999999999999999999987654
No 97
>KOG0046|consensus
Probab=97.67 E-value=0.00023 Score=51.23 Aligned_cols=62 Identities=27% Similarity=0.640 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGER---LSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~---~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
..++..|...| +++|.|+..++..++...+.. ...+++..++...+.|.+|.|++++|+.++
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~ 83 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIF 83 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHH
Confidence 45777899999 899999999999999887643 358889999999999999999999999854
No 98
>KOG0035|consensus
Probab=97.67 E-value=0.0013 Score=50.60 Aligned_cols=105 Identities=19% Similarity=0.273 Sum_probs=83.5
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHH-----HHHHHHHHhCcCCCCccchHHHHHHHHhhc
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEA-----ELLDLIREIDVNQRGTIDFPEFLTVMARKL 77 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 77 (148)
...++....+++..|+.+++...|.++..++..+|-.+|...-.+ ++..+....++...|.|++.+|...+....
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 456788899999999999999999999999999999999877642 344455555666668999999999998776
Q ss_pred CCCCCHHHHHHHHHhhcCCCCCcccHHHHHH
Q psy12851 78 NTPDSTEEIKQAFQVFDKHKQGYICADELRH 108 (148)
Q Consensus 78 ~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~ 108 (148)
........+-.+|+.+-++.. .|..+|+.+
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 666666777778888876544 688888777
No 99
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.57 E-value=0.0013 Score=40.92 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcC---CCCccchHHHHHHHH---hhcC------
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVN---QRGTIDFPEFLTVMA---RKLN------ 78 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~ef~~~~~---~~~~------ 78 (148)
..|++...-+|+|++|.|.+-|-...++.+|+.+..+-+..++-...-. ..+.+.-.-|.-.+. ...+
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 3467777889999999999999999999999988777755444322111 111111100100000 0001
Q ss_pred ----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC-------CCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 79 ----TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE-------RLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 79 ----~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~-------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
-.-..+.+..+|..++..+.+.+|..|+..+++.... ..+.-|...+.. +..+++|.+..++.-.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~iR~ 162 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKEDIRG 162 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHHHhh
Confidence 0112468999999999988899999999999987421 112222322322 3457899998887544
No 100
>KOG4065|consensus
Probab=97.49 E-value=0.00045 Score=39.88 Aligned_cols=58 Identities=31% Similarity=0.550 Sum_probs=42.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHh------C---CC-CCHHH----HHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 89 AFQVFDKHKQGYICADELRHVMTTL------G---ER-LSEDE----VNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~~~------~---~~-~~~~~----~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
-|++.|-|+++.++--|+.+.+.-+ | .+ +++.+ ++.+++.-|.|++|.|+|.||++..
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~q 143 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKRQ 143 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhhc
Confidence 4788899999999988888876432 2 12 23444 4445666789999999999998754
No 101
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.44 E-value=0.00025 Score=29.95 Aligned_cols=27 Identities=37% Similarity=0.834 Sum_probs=18.3
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHH
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRF 39 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (148)
++.+|..+|.+++|.|+..+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777766543
No 102
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.42 E-value=0.00019 Score=30.32 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=11.0
Q ss_pred HHHHhhCcCCCCcccHHHHHHHh
Q psy12851 124 EMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 124 ~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.++..+|.+++|.|++.+|..++
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHH
Confidence 34444444444555555544443
No 103
>KOG4065|consensus
Probab=97.40 E-value=0.0015 Score=37.78 Aligned_cols=66 Identities=32% Similarity=0.414 Sum_probs=38.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH------cCCC----CCHHHHHHH----HHHhCcCCCCccchHHH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRF------LGLT----PTEAELLDL----IREIDVNQRGTIDFPEF 69 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~------~~~~----~~~~~~~~~----~~~~~~~~~~~i~~~ef 69 (148)
++++++.+- ..|+..|-++++.++--|+..++.- .|.. +++.++..+ ++.-|.+++|.|+|.||
T Consensus 62 ~mtpeqlqf--HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQF--HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHhh--hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 456666543 5677888888888888887776643 2321 233333333 33335566677777776
Q ss_pred HH
Q psy12851 70 LT 71 (148)
Q Consensus 70 ~~ 71 (148)
+.
T Consensus 140 lK 141 (144)
T KOG4065|consen 140 LK 141 (144)
T ss_pred Hh
Confidence 54
No 104
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.33 E-value=0.0011 Score=36.46 Aligned_cols=62 Identities=16% Similarity=0.288 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHcCC--CCCHHHHHHHHHHhCcC----CCCccchHHHHHHHHh
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRFLGL--TPTEAELLDLIREIDVN----QRGTIDFPEFLTVMAR 75 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~----~~~~i~~~ef~~~~~~ 75 (148)
+..+|..+.. +.+.||..+|..+|..-.. ..+.+.+..++..+.++ ..+.+++.+|..++..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 5677888844 6788888888888866432 34677788887777544 3577888888887764
No 105
>KOG1955|consensus
Probab=97.31 E-value=0.0012 Score=47.53 Aligned_cols=70 Identities=20% Similarity=0.218 Sum_probs=62.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
++++++.+.+..-|+.+-+|-.|+|+-.--+.++.+ .+++-.|+..||...|.+.+|.+++.||+..+..
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtK--Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTK--SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhh--ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 478999999999999999999999998888887766 4678889999999999999999999999988754
No 106
>KOG1955|consensus
Probab=97.12 E-value=0.0016 Score=46.88 Aligned_cols=63 Identities=17% Similarity=0.396 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
++.+...|+.+.+|-.|.|+-.--+.++.+.. ++-.++..+|+..|.+.+|.+++.||+.++.
T Consensus 230 ReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 230 REYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 46777889999999999999999999998765 6778899999999999999999999998763
No 107
>KOG4251|consensus
Probab=97.03 E-value=0.00043 Score=45.35 Aligned_cols=62 Identities=18% Similarity=0.405 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHH-HHhCCCC--CHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVM-TTLGERL--SEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l-~~~~~~~--~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
.+.+..+|...|.+.+|+|+..|+++.+ +.+..++ +-++-...|+..|+|++|.|+++||.-
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykv 164 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKV 164 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhh
Confidence 3556677888888888888888886654 3332221 122344566777888888888888753
No 108
>KOG0998|consensus
Probab=96.84 E-value=0.0016 Score=50.66 Aligned_cols=136 Identities=18% Similarity=0.335 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC------
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN------ 78 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~------ 78 (148)
++..+..++..+|..+.+ +.|.++....+.+|.. -.++...+.++|...|.+.+|.++..+|...+.....
T Consensus 123 ~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~--s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~ 199 (847)
T KOG0998|consen 123 ITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLN--SKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNS 199 (847)
T ss_pred CCHHHHHHHHHHHhccCC-CCCccccchhhhhhhc--CCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhccc
Confidence 577888899999999976 5889999888887754 4677778889999999999999999999765432100
Q ss_pred ------------------------------------------------------------------------------CC
Q psy12851 79 ------------------------------------------------------------------------------TP 80 (148)
Q Consensus 79 ------------------------------------------------------------------------------~~ 80 (148)
.+
T Consensus 200 ~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp 279 (847)
T KOG0998|consen 200 EPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSP 279 (847)
T ss_pred CCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccCh
Confidence 00
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q psy12851 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTL 145 (148)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (148)
.....+..+|...|.+.+|.|+..+.+.++...| ++...+..++...+..+.|.+++.+|.-.
T Consensus 280 ~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~ 342 (847)
T KOG0998|consen 280 SDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALA 342 (847)
T ss_pred HHHHHHHHHHHhccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchh
Confidence 1123556689999999999999999999997755 78888999999999999999999987643
No 109
>PLN02952 phosphoinositide phospholipase C
Probab=96.79 E-value=0.037 Score=41.58 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=38.9
Q ss_pred CccchHHHHHHHHhhcC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHHHhhC-------c
Q psy12851 62 GTIDFPEFLTVMARKLN-TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE--RLSEDEVNEMIQEAD-------I 131 (148)
Q Consensus 62 ~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~--~~~~~~~~~~~~~~d-------~ 131 (148)
|.++|++|..+...... ......++..+|..+..+ .+.++.++|..+|..... ..+.+.+..++..+- .
T Consensus 15 g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~ 93 (599)
T PLN02952 15 GSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTR 93 (599)
T ss_pred CCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccc
Confidence 45566666555443321 111344555566655432 245666666666654331 233344444433221 1
Q ss_pred CCCCcccHHHHHHHhc
Q psy12851 132 NGDGRINYEDFVTLMT 147 (148)
Q Consensus 132 ~~~g~i~~~ef~~~l~ 147 (148)
...+.++++.|..+|.
T Consensus 94 ~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 94 YTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccCcCHHHHHHHHc
Confidence 1223466666666653
No 110
>KOG1029|consensus
Probab=96.66 E-value=0.0041 Score=47.21 Aligned_cols=66 Identities=14% Similarity=0.270 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
+.....++..+|+.+|+..+|++|-.+-+.+|-.. .++...+..||..-|.|++|.++-+||+-.+
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 34456678899999999999999999999988764 4677788999999999999999999998654
No 111
>KOG0042|consensus
Probab=96.66 E-value=0.0061 Score=44.79 Aligned_cols=73 Identities=25% Similarity=0.350 Sum_probs=66.6
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
.++++++......|..+|.++.|+++..++..+++..+...+...+..+.+..+...+|.+...+|..+++..
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred ccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 4689999999999999999999999999999999998888999999999999988889999999999888754
No 112
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.56 E-value=0.019 Score=35.52 Aligned_cols=64 Identities=14% Similarity=0.320 Sum_probs=47.9
Q ss_pred HHHHHHHhc---CCCCCCcCHHHHHHHHHHcCC---CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 13 FKEAFSFFN---RQGDGRIPIHELGTVMRFLGL---TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 13 l~~~f~~~d---~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
|+.+|..|. +.+...|+...|..+++..++ ..+...+..+|..+...+...|+|++|+.++...
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 355666663 445667999999999988643 6889999999999877777789999999888643
No 113
>KOG3555|consensus
Probab=96.50 E-value=0.013 Score=40.54 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHc---CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHH
Q psy12851 12 DFKEAFSFFNRQGDGRIPIHELGTVMRFL---GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQ 88 (148)
Q Consensus 12 ~l~~~f~~~d~~~~g~i~~~e~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~ 88 (148)
+|+..|..+-.+.++......+...-..+ -.+.-..++.-+|..+|.+.++.++..|...+.. ...+..++.
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~Cikp 286 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKP 286 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc-----cCchhHHHH
Confidence 45666776655555555555555443322 2346677889999999999999999999776655 345678999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 89 AFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
+|.++|...||.|+..|....+....
T Consensus 287 FfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 287 FFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred HHhhhcccccCccccchhhhhhccCC
Confidence 99999999999999999999998776
No 114
>KOG2243|consensus
Probab=96.42 E-value=0.0073 Score=48.98 Aligned_cols=56 Identities=21% Similarity=0.479 Sum_probs=50.4
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 90 FQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 90 f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
|+.+|+||.|.|+..+|...++... ..+.++++-++.....|.+.-.+|++|++-+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 7788999999999999999998765 4788999999999999999999999998754
No 115
>KOG0998|consensus
Probab=96.41 E-value=0.0037 Score=48.73 Aligned_cols=137 Identities=20% Similarity=0.326 Sum_probs=105.9
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC------
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN------ 78 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~------ 78 (148)
++...-..+..+|..+|..++|.|+..+...++.. ..+....+.++|...+..+.|..+..+|...++....
T Consensus 5 ~~~~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~--s~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~ 82 (847)
T KOG0998|consen 5 LSPPGQPLFDQYFKSADPQGDGRITGAEAVAFLSK--SGLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRE 82 (847)
T ss_pred CCCCccchHHHhhhccCcccCCcccHHHhhhhhhc--cccchhhhhccccccccccCCccccccccccchHhhhhhcccC
Confidence 33344466788999999999999999999888765 4577888899999999998899998888765543210
Q ss_pred -----------------------------------------CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCC
Q psy12851 79 -----------------------------------------TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERL 117 (148)
Q Consensus 79 -----------------------------------------~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~ 117 (148)
.......+..+|..+.+ +.|.++....+.++..-+ +
T Consensus 83 ~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p-~~g~~sg~~~~pil~~s~--L 159 (847)
T KOG0998|consen 83 LSAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSP-SNGLLSGDKAKPILLNSK--L 159 (847)
T ss_pred cCccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCC-CCCccccchhhhhhhcCC--C
Confidence 00011345556888887 488999999999887655 6
Q ss_pred CHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 118 SEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 118 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
+...+..++...|.+.+|.++..+|.-.+
T Consensus 160 p~~~l~~iw~l~d~d~~g~Ld~~ef~~am 188 (847)
T KOG0998|consen 160 PSDVLGRIWELSDIDKDGNLDRDEFAVAM 188 (847)
T ss_pred ChhhhccccccccccccCCCChhhhhhhh
Confidence 77778899999999999999999997654
No 116
>KOG1265|consensus
Probab=96.19 E-value=0.33 Score=38.13 Aligned_cols=121 Identities=15% Similarity=0.324 Sum_probs=86.1
Q ss_pred cCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhC--cCCCCcc-----chHHHHHHHHhhcCCCCCHHHHHHHHHhh
Q psy12851 21 NRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREID--VNQRGTI-----DFPEFLTVMARKLNTPDSTEEIKQAFQVF 93 (148)
Q Consensus 21 d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i-----~~~ef~~~~~~~~~~~~~~~~~~~~f~~~ 93 (148)
-.+.+|.|..+.+...+.. ......+...+..+. .+++..| +++.|..++.... ...++..+|..+
T Consensus 158 qvn~~grip~knI~k~F~~---~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klc----pR~eie~iF~ki 230 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSA---DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLC----PRPEIEEIFRKI 230 (1189)
T ss_pred cccccccccHHHHHHHhhc---CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcC----CchhHHHHHHHh
Confidence 3467889998888776543 233355555555553 2233444 4555666665432 346799999999
Q ss_pred cCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCcCC----CCcccHHHHHHHhcC
Q psy12851 94 DKHKQGYICADELRHVMTTL----------GERLSEDEVNEMIQEADING----DGRINYEDFVTLMTS 148 (148)
Q Consensus 94 d~~~~g~I~~~e~~~~l~~~----------~~~~~~~~~~~~~~~~d~~~----~g~i~~~ef~~~l~~ 148 (148)
..++.-.+|.++|..++... -....+..+..+++.+.++. .|.++-+.|+.++++
T Consensus 231 ~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 231 SGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred ccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 98888999999999999652 24567888999999998774 789999999998864
No 117
>KOG0169|consensus
Probab=96.15 E-value=0.092 Score=40.12 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy12851 45 TEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124 (148)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~ 124 (148)
....+..++...|.+++|.+++.+-..++.... ..-....++..|+..+..+++.+...++..+....+..+ ++..
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~ 209 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYF 209 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHH
Confidence 344578899999999999999998888776432 233456778888888888999999999999988776433 5666
Q ss_pred HHHhhCcCCCCcccHHHHHHHh
Q psy12851 125 MIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 125 ~~~~~d~~~~g~i~~~ef~~~l 146 (148)
++..+..+ .+.++..++..++
T Consensus 210 ~f~~~s~~-~~~ls~~~L~~Fl 230 (746)
T KOG0169|consen 210 LFVQYSHG-KEYLSTDDLLRFL 230 (746)
T ss_pred HHHHHhCC-CCccCHHHHHHHH
Confidence 66666544 6666666666554
No 118
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.07 E-value=0.06 Score=33.35 Aligned_cols=51 Identities=14% Similarity=0.391 Sum_probs=33.3
Q ss_pred CCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 96 HKQGYICADELRHVMTTLG---ERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 96 ~~~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.+...++-..|..+|+..+ ..++..+++.+|..+-..+...|+|++|..+|
T Consensus 14 ~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL 67 (154)
T PF05517_consen 14 KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEAL 67 (154)
T ss_dssp STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHH
T ss_pred CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHH
Confidence 3455677777777777654 34677777777777666666667888777765
No 119
>KOG4578|consensus
Probab=95.45 E-value=0.012 Score=40.38 Aligned_cols=64 Identities=19% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 49 LLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
+...|..+|.+.++.|+-.||..+=.............+.+|+.+|.|+|.+|+..|++..+..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4556778888888888766665554444333445567788888889999999998888887754
No 120
>KOG1707|consensus
Probab=95.41 E-value=0.06 Score=40.03 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=51.5
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCC----CHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP----TEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
..+++..+..+..+|.++|.+++|.++..|+..++....-.+ +..+... .+..|.+++..|+..+..
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~------~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTV------KNERGWLTLNGFLSQWSL 377 (625)
T ss_pred eeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccce------ecccceeehhhHHHHHHH
Confidence 357889999999999999999999999999999988764433 1111111 235789999999987764
No 121
>KOG4347|consensus
Probab=95.16 E-value=0.049 Score=40.81 Aligned_cols=56 Identities=20% Similarity=0.336 Sum_probs=30.2
Q ss_pred HHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHH
Q psy12851 49 LLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADEL 106 (148)
Q Consensus 49 ~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~ 106 (148)
+.++|+..|.+.+|.++|.+++..+.... ....-+.+..+|+.+|++++ ....++.
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 44555555555566666666655555332 23333455555666666555 5555555
No 122
>KOG1264|consensus
Probab=95.13 E-value=0.19 Score=39.09 Aligned_cols=142 Identities=13% Similarity=0.252 Sum_probs=85.1
Q ss_pred ccHHHHHHH-HHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHH-HHHHHhCcCCCCccchHHHHHHHHhhcCCCCC
Q psy12851 5 LTEEQINDF-KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELL-DLIREIDVNQRGTIDFPEFLTVMARKLNTPDS 82 (148)
Q Consensus 5 l~~~~~~~l-~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~ 82 (148)
.++-++..| ++.+...|......|+..++..+|...++.++..... .-+-. +....+.++|++|..+....+-....
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~ 215 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQK 215 (1267)
T ss_pred CChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccch
Confidence 355566554 5667777776777799999999988877776655432 22221 22346779999999887765543322
Q ss_pred HHHHH--H--HHHhhcCCCCCcccHHHHHHHHHHhCCCCCH---HHHHHHHHhhCcC-----CCCcccHHHHHHHhc
Q psy12851 83 TEEIK--Q--AFQVFDKHKQGYICADELRHVMTTLGERLSE---DEVNEMIQEADIN-----GDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~--~--~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~---~~~~~~~~~~d~~-----~~g~i~~~ef~~~l~ 147 (148)
...+. . +...-+...-.+|+..+|.++|..-...... ..+..+++.|-.| ....+++.||+.+|-
T Consensus 216 a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~fLF 292 (1267)
T KOG1264|consen 216 AILLEFKKDFILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTFLF 292 (1267)
T ss_pred hhhhcccchhhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHHHh
Confidence 11111 1 1122233334689999999999653221111 1344445444222 355789999999874
No 123
>KOG0042|consensus
Probab=94.87 E-value=0.07 Score=39.59 Aligned_cols=63 Identities=29% Similarity=0.463 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 85 EIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+.-|..+|.++.|.++..++..+|+..+.+++.+.++..+...+.+.+|.+...||.+++.
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s 656 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMS 656 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHH
Confidence 445568999999999999999999999998889999999999999999999999999988764
No 124
>KOG4347|consensus
Probab=94.87 E-value=0.047 Score=40.87 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=55.2
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHH
Q psy12851 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYE 140 (148)
Q Consensus 64 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 140 (148)
++|..|...+..............++|+.+|.+++|.++..++..-+..+...-.-+.+..+++.+++.++ ..+.+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e 610 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDRE 610 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccc
Confidence 56777777776544434445567889999999999999999998888877655555667777888877766 54443
No 125
>PLN02952 phosphoinositide phospholipase C
Probab=94.83 E-value=0.82 Score=34.74 Aligned_cols=87 Identities=9% Similarity=0.148 Sum_probs=60.8
Q ss_pred CCCCcCHHHHHHHHHHcCC--CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCC-CCHHHHHHHHHhh----c--
Q psy12851 24 GDGRIPIHELGTVMRFLGL--TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTP-DSTEEIKQAFQVF----D-- 94 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~----d-- 94 (148)
+.|.++.++|..+.+.+.. ..++.++..+|..+.. +.+.++.++|..++....... ...+....++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888777643 3478999999999964 446899999999998765433 2233444444332 1
Q ss_pred -CCCCCcccHHHHHHHHH
Q psy12851 95 -KHKQGYICADELRHVMT 111 (148)
Q Consensus 95 -~~~~g~I~~~e~~~~l~ 111 (148)
..+.+.++.+.|..+|.
T Consensus 92 ~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ccccccCcCHHHHHHHHc
Confidence 11234589999988885
No 126
>KOG4578|consensus
Probab=94.75 E-value=0.026 Score=38.86 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhh
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRFL-GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARK 76 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~ 76 (148)
+.=.|..+|+|+++.|...|++.+-.-+ .......=..++++.+|.+++..|++.||...+...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 4446899999999999999987654332 233444446789999999999999999999988754
No 127
>KOG2243|consensus
Probab=94.62 E-value=0.082 Score=43.50 Aligned_cols=56 Identities=18% Similarity=0.324 Sum_probs=48.0
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 17 FSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 17 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
|..+|+++.|.|+.++|..++... ...+.+++..++.....+.+...+|++|+.-+
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 567899999999999999988653 35788889999999999999999999998754
No 128
>KOG3555|consensus
Probab=94.60 E-value=0.11 Score=36.23 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=53.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
-...+-..|..+|.+.||.++..|++.+.. .-.+..+..+|...|...+|.|+-.|++..+.
T Consensus 248 CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 356788899999999999999999998764 24567899999999999999999999987653
No 129
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.55 E-value=0.38 Score=30.24 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRF 39 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (148)
.++++++|.++++.+.+.+|..|+..+++.
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 356777788887777777777777776654
No 130
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.47 E-value=0.44 Score=26.67 Aligned_cols=61 Identities=15% Similarity=0.280 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHh-------C----CCCCHHHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTL-------G----ERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
+.++.+|+.+ .|.+|.++...|..+|+.. | ....+..++.+|... .....|+.++|+..++
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4677788888 3577888888888777642 2 122556666666655 2455788888888765
No 131
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.05 E-value=0.033 Score=29.49 Aligned_cols=57 Identities=23% Similarity=0.448 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcC-------CCCcccHHHHHHHh
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADIN-------GDGRINYEDFVTLM 146 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-------~~g~i~~~ef~~~l 146 (148)
..+.+..+|+.+ .++.+.||.++|+..|. ++..+.++..+..- ..|..+|..|.+.|
T Consensus 4 s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~l 67 (69)
T PF08726_consen 4 SAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTNSL 67 (69)
T ss_dssp TCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHCCC
T ss_pred CHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHHH
Confidence 346788999999 67889999999999763 22235555444322 23678999887654
No 132
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=93.57 E-value=0.21 Score=30.34 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhC-------cCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCC
Q psy12851 26 GRIPIHELGTVMRFLGLTPTEAELLDLIREID-------VNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHK 97 (148)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~ 97 (148)
+.||..||.++-.-.. .+...+..++..+. .+..+.|+|+.|..++...+...-..+..+.+|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 4567777766433321 22334444555442 2346689999999999988877767788889999996544
No 133
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=93.24 E-value=0.76 Score=26.18 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=51.6
Q ss_pred CCCCcCHHHHHHHHHHc--CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcc
Q psy12851 24 GDGRIPIHELGTVMRFL--GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYI 101 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I 101 (148)
.||.++..|...+-..+ .+.++..+...+...+........++.+|...+............+..++...-. ||.+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~A--DG~~ 89 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAYA--DGEL 89 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--cCCC
Confidence 46888988877654332 1356777777777777665566688888888776544222233444555665543 4666
Q ss_pred cHHHHHH
Q psy12851 102 CADELRH 108 (148)
Q Consensus 102 ~~~e~~~ 108 (148)
+..|-.-
T Consensus 90 ~~~E~~~ 96 (104)
T cd07313 90 DEYEEHL 96 (104)
T ss_pred CHHHHHH
Confidence 6665443
No 134
>KOG3866|consensus
Probab=92.22 E-value=0.46 Score=32.80 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH----hCCCCC-HHH-----------HHHHHHhhCcCCCCcccHHHHHHH
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTT----LGERLS-EDE-----------VNEMIQEADINGDGRINYEDFVTL 145 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~----~~~~~~-~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~ 145 (148)
.+..|...|.+++|+++..++..++.. +-.+-+ +.+ -..+++..|.|.+.-||.++|++.
T Consensus 246 PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 246 PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhh
Confidence 455688889999999999999988754 211111 111 234677889999999999999864
No 135
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.80 E-value=1.4 Score=24.72 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHc-----------CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFL-----------GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
.+++-+|..+ .|++|.++...|..+|... .+...+..++..|.... ....|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 5778899999 6789999999998887652 12335556666666542 3456788888877764
No 136
>KOG0035|consensus
Probab=91.24 E-value=0.96 Score=35.75 Aligned_cols=65 Identities=18% Similarity=0.246 Sum_probs=52.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSE-----DEVNEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
..+++..|+-++....|..+.+++...+-.+|...-. .++..++...+++..|.+++.+|...|.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~ 815 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLE 815 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhh
Confidence 4578888999999889999999999999999987663 2455555666777789999999998763
No 137
>PLN02222 phosphoinositide phospholipase C 2
Probab=89.77 E-value=2.6 Score=32.05 Aligned_cols=67 Identities=6% Similarity=0.115 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCC-CCHHHHHHHHHhhcC-CCCCcccHHHHHHHHH
Q psy12851 43 TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTP-DSTEEIKQAFQVFDK-HKQGYICADELRHVMT 111 (148)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~d~-~~~g~I~~~e~~~~l~ 111 (148)
..+..++..+|..+.. ++.++.++|..++....... ...+....++..+.. ...+.++.+.|..+|.
T Consensus 21 ~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 21 SEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 4456677777777743 45777777777776544432 233445555555422 1344577777777664
No 138
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=89.58 E-value=1.7 Score=22.98 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=28.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
++.+++..+++..|..++.+++..+++.-+..+.-..+-..+..+|
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 3445677777777777888888888776554444444444444433
No 139
>PLN02228 Phosphoinositide phospholipase C
Probab=89.45 E-value=3.6 Score=31.25 Aligned_cols=67 Identities=12% Similarity=0.291 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCC-CCHHHHHHHHHhhcCC----CCCcccHHHHHHHH
Q psy12851 42 LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTP-DSTEEIKQAFQVFDKH----KQGYICADELRHVM 110 (148)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~-~~~~~~~~~f~~~d~~----~~g~I~~~e~~~~l 110 (148)
...+++++..+|..+.. ++.++.++|..++....... ...+.+..++..+.+. ..|.++.+.|..+|
T Consensus 19 ~~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 19 TREPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 34577788888877753 35688888887776554322 2234556666666432 23456777776666
No 140
>KOG2301|consensus
Probab=88.91 E-value=1 Score=38.12 Aligned_cols=71 Identities=18% Similarity=0.350 Sum_probs=54.1
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHc----CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFL----GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
.|++.+++.++++|.++|++..|.|...++..+++.+ ++....+. +.+-..+....++.|++.+-+..+..
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 5889999999999999999999999999999998875 33322222 33444445557889998888777654
No 141
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.77 E-value=0.49 Score=25.14 Aligned_cols=48 Identities=15% Similarity=0.391 Sum_probs=26.9
Q ss_pred CccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12851 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113 (148)
Q Consensus 62 ~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 113 (148)
-.++|......+...+. +. ....+...|+.-..+.|++++|.+.++..
T Consensus 7 p~~~F~~L~~~l~~~l~-~~---~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLP-PS---KMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCC-HH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34666666666665433 22 23333333433356778888888877653
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=88.75 E-value=4.2 Score=31.09 Aligned_cols=27 Identities=11% Similarity=0.469 Sum_probs=12.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 85 EIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
++..+|..+..++ +.++.++|..+|..
T Consensus 30 ei~~lf~~~s~~~-~~mt~~~l~~FL~~ 56 (598)
T PLN02230 30 DVRDLFEKYADGD-AHMSPEQLQKLMAE 56 (598)
T ss_pred HHHHHHHHHhCCC-CccCHHHHHHHHHH
Confidence 4444444443222 44555555555444
No 143
>KOG3077|consensus
Probab=88.57 E-value=5.8 Score=26.89 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=65.8
Q ss_pred HHHHHHHHHHh-cCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCC---------
Q psy12851 10 INDFKEAFSFF-NRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNT--------- 79 (148)
Q Consensus 10 ~~~l~~~f~~~-d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~--------- 79 (148)
...+...|+.+ |+..+..|-.+-+..++..+|+.+..-.+.-+--.++...-+..+..+|+..+......
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~dS~d~lq~~l 142 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGCDSIDKLQQRL 142 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCCCcHHHHHHHH
Confidence 45566777766 55555688899999999999988877666555555655556788888888765432110
Q ss_pred ----------CCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 80 ----------PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 80 ----------~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
.......+.+|......+-..++.+.-..++.-++
T Consensus 143 ~~l~~~l~d~~~Fk~iY~faf~fa~e~~qk~Ld~~~ai~~w~ll~ 187 (260)
T KOG3077|consen 143 DFLRSVLKDLEKFKSIYRFAFNFAKEPGQKSLDLETAISLWKLLF 187 (260)
T ss_pred HHHHHHHccHHHhhHHHHhhhhhccCcCcCcCCHHHHHHHHHHHh
Confidence 00112334445555544556677776666665544
No 144
>KOG2871|consensus
Probab=88.37 E-value=0.55 Score=33.22 Aligned_cols=60 Identities=33% Similarity=0.485 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHHHhhCcCCCCcccHHHH
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE-VNEMIQEADINGDGRINYEDF 142 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~-~~~~~~~~d~~~~g~i~~~ef 142 (148)
.+.++++|..+|+.+.|.|+.+-++.++......+++.. +..+-..+++..-|-|-..+|
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 478999999999999999999999999999885555444 333333456655555544443
No 145
>KOG0039|consensus
Probab=86.74 E-value=2.4 Score=32.77 Aligned_cols=78 Identities=23% Similarity=0.457 Sum_probs=53.4
Q ss_pred CCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh--------CCCCCHHHHHHHHHhhCcC
Q psy12851 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL--------GERLSEDEVNEMIQEADIN 132 (148)
Q Consensus 61 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~--------~~~~~~~~~~~~~~~~d~~ 132 (148)
++ +++++|. ......+..++..|.++|. ++|.++.+++..++... ....+.+....++...+.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 35 7777777 2233456778888888887 88889988888876542 1234455566677778888
Q ss_pred CCCcccHHHHHHHh
Q psy12851 133 GDGRINYEDFVTLM 146 (148)
Q Consensus 133 ~~g~i~~~ef~~~l 146 (148)
+.|.+.++++.-.+
T Consensus 74 ~~~y~~~~~~~~ll 87 (646)
T KOG0039|consen 74 HKGYITNEDLEILL 87 (646)
T ss_pred ccceeeecchhHHH
Confidence 88877776665543
No 146
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=86.67 E-value=4.1 Score=23.23 Aligned_cols=24 Identities=21% Similarity=0.560 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGT 35 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~ 35 (148)
+..++..|.++-. +|+++...|..
T Consensus 29 W~~VE~RFd~La~--dG~L~rs~Fg~ 52 (100)
T PF08414_consen 29 WKEVEKRFDKLAK--DGLLPRSDFGE 52 (100)
T ss_dssp HHHHHHHHHHH-B--TTBEEGGGHHH
T ss_pred HHHHHHHHHHhCc--CCcccHHHHHH
Confidence 4444455555433 45555555544
No 147
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=85.59 E-value=0.83 Score=26.75 Aligned_cols=33 Identities=27% Similarity=0.514 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 43 TPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
-++++++..+|..+..+..|++.|.+|+.-+..
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 367888999999999999999999999987763
No 148
>KOG1265|consensus
Probab=85.08 E-value=19 Score=29.20 Aligned_cols=78 Identities=12% Similarity=0.299 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC---------CCCCHHHHHHHHHhhcCCC----C
Q psy12851 32 ELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN---------TPDSTEEIKQAFQVFDKHK----Q 98 (148)
Q Consensus 32 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~---------~~~~~~~~~~~f~~~d~~~----~ 98 (148)
.|..++..+ -++.+|..+|..+..++...++.+++..++....+ ++.....+..+...+.++. +
T Consensus 209 ~f~~~l~kl---cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~ 285 (1189)
T KOG1265|consen 209 KFYRLLNKL---CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEK 285 (1189)
T ss_pred HHHHHHHhc---CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhc
Confidence 344444443 45678999999998888889999999999876433 3445677888899987764 5
Q ss_pred CcccHHHHHHHHHH
Q psy12851 99 GYICADELRHVMTT 112 (148)
Q Consensus 99 g~I~~~e~~~~l~~ 112 (148)
|.++.+-|.+.+..
T Consensus 286 gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 286 GQMSTDGFVRYLMG 299 (1189)
T ss_pred cccchhhhHHHhhC
Confidence 88999999888754
No 149
>PLN02228 Phosphoinositide phospholipase C
Probab=84.58 E-value=11 Score=28.70 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCC--CCCHHHHHHHHHHhCcCC----CCccchHHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL--TPTEAELLDLIREIDVNQ----RGTIDFPEFLTVM 73 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~~~----~~~i~~~ef~~~~ 73 (148)
..++..+|..+-. ++.|+.++|..+|....- ....+.+..++..+.... .+.++.+.|..++
T Consensus 23 ~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 23 PVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred cHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3456667777643 368999999999987642 245667888888886432 3567877776665
No 150
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.39 E-value=6.2 Score=23.12 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
+..+|..+...++..+|.+++.+++...|..+.+..+..+++.+.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344566666667778999999999999999999999999988885
No 151
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=84.11 E-value=3.3 Score=19.72 Aligned_cols=32 Identities=13% Similarity=0.254 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhcC--CCCCCcCHHHHHHHHHH
Q psy12851 8 EQINDFKEAFSFFNR--QGDGRIPIHELGTVMRF 39 (148)
Q Consensus 8 ~~~~~l~~~f~~~d~--~~~g~i~~~e~~~~l~~ 39 (148)
..+..+..+|+++.. .....++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 456678888888852 34567999999988764
No 152
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=83.58 E-value=4.4 Score=21.09 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=28.6
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy12851 26 GRIPIHELGTVMRFLGLTPTEAELLDLIREID 57 (148)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (148)
-.|+.+.++......|.++++..+.++.+.+.
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 36999999999999999999999999988764
No 153
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=82.63 E-value=4.9 Score=20.95 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=28.0
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
+-.|+.+-++.++..+|.++++..+..+++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34599999999999999999999999988765
No 154
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=82.41 E-value=6.4 Score=21.80 Aligned_cols=68 Identities=12% Similarity=0.198 Sum_probs=45.5
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhc--CCCCCHHHHHHHHHhh
Q psy12851 26 GRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKL--NTPDSTEEIKQAFQVF 93 (148)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~--~~~~~~~~~~~~f~~~ 93 (148)
..||..||...-+..+.+.+.+....+...+...+-.-.+-++-..++.... ..+.....+..+|.-|
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~qf 82 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQF 82 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998888766555556555555544321 2233344455555433
No 155
>PRK00523 hypothetical protein; Provisional
Probab=82.38 E-value=5.2 Score=21.33 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=28.3
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 26 GRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
=.|+.+.++......|.++++..++++.+.+
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3699999999999999999999999998877
No 156
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=82.32 E-value=5.6 Score=21.01 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 28 IPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
++..++..+++..|+.++.+++..+++.-+..+-...+-..+..++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL 59 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFL 59 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHH
Confidence 4456788888888888888888888877554433334433344443
No 157
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=82.16 E-value=8.6 Score=23.07 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=19.5
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 85 EIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
.+..++..||++++|.|+.-.++-.+..
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 3555788899999999999988877654
No 158
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=82.11 E-value=1.9 Score=25.90 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=42.7
Q ss_pred CCCCcCHHHHHHHHHHc--CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcc
Q psy12851 24 GDGRIPIHELGTVMRFL--GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYI 101 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I 101 (148)
-||.++..|...+...+ ....+..+...+...++.......++.+++..+............+..++.....| |.+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~AD--G~~ 113 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAYAD--GEI 113 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTCT--TC-
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhcC--CCC
Confidence 57889988887765544 33445555666666665444445777777766654333222234455566666654 444
Q ss_pred cHHH
Q psy12851 102 CADE 105 (148)
Q Consensus 102 ~~~e 105 (148)
+..|
T Consensus 114 ~~~E 117 (140)
T PF05099_consen 114 SPEE 117 (140)
T ss_dssp SCCH
T ss_pred CHHH
Confidence 4433
No 159
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=81.51 E-value=2.5 Score=22.45 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=23.4
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhc
Q psy12851 27 RIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKL 77 (148)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~ 77 (148)
.++...+..+|.. .++.+....+...|+.=..+.|+-++|+..++...
T Consensus 8 ~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 8 WMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIV 55 (70)
T ss_pred cccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444444444443 23333333333333333355677777776665543
No 160
>KOG3866|consensus
Probab=81.45 E-value=5.7 Score=27.71 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=41.5
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC---CCCC---------HHHH---HHHHHhh
Q psy12851 30 IHELGTVMRFL-GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN---TPDS---------TEEI---KQAFQVF 93 (148)
Q Consensus 30 ~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~---~~~~---------~~~~---~~~f~~~ 93 (148)
..++..+-..+ |+.+..-.=...|...|.+++|.++-.+.-.++...+. .+.+ .+.+ ..+....
T Consensus 226 kdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~v 305 (442)
T KOG3866|consen 226 KDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQV 305 (442)
T ss_pred HHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence 34444444332 33333333344555666677777776666555543221 1111 0111 2245666
Q ss_pred cCCCCCcccHHHHHHHHH
Q psy12851 94 DKHKQGYICADELRHVMT 111 (148)
Q Consensus 94 d~~~~g~I~~~e~~~~l~ 111 (148)
|.+.+..||.++|...-.
T Consensus 306 DtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 306 DTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred ccchhhhhhHHHHHhhhh
Confidence 777777777777765543
No 161
>PLN02230 phosphoinositide phospholipase C 4
Probab=80.83 E-value=15 Score=28.26 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCC---CCCHHHHHHHHHHhCc-------CCCCccchHHHHHHHHh
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL---TPTEAELLDLIREIDV-------NQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~~-------~~~~~i~~~ef~~~~~~ 75 (148)
...++.+|..+-. +.+.|+.++|..+|..-.. ..+.+.+..++..+.. -+.+.++.+.|..++..
T Consensus 28 ~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 28 VADVRDLFEKYAD-GDAHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred cHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 3567888888843 4489999999999988652 2355666666654321 12456999999998754
No 162
>KOG4004|consensus
Probab=80.66 E-value=0.63 Score=30.00 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=36.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 96 HKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 96 ~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.-||.+|..|+.-+-.. .-+.+..+..++...|.|++|.|+++||...+
T Consensus 200 p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred CccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 46888998887654322 22456678889999999999999999987644
No 163
>PRK00523 hypothetical protein; Provisional
Probab=80.19 E-value=6.6 Score=20.96 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
+--|+.+-++.++..+|.++++..+..+++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34699999999999999999999999998876
No 164
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.19 E-value=6.9 Score=20.72 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=28.6
Q ss_pred CCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy12851 26 GRIPIHELGTVMRFLGLTPTEAELLDLIREID 57 (148)
Q Consensus 26 g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (148)
=.|+.+.++..+...|.++++..++++++.+.
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 36999999999999999999999999998764
No 165
>KOG2871|consensus
Probab=79.90 E-value=1.9 Score=30.70 Aligned_cols=64 Identities=19% Similarity=0.302 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHH-HHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAE-LLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
-.++++.|+.+|+.++|+|+..-+..++..++...++++ +..+-..+++..-|-|-..+|...+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 356889999999999999999999999888875544444 4444445556555656555554433
No 166
>KOG4301|consensus
Probab=79.27 E-value=9.3 Score=27.08 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHHHH--HhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC
Q psy12851 4 QLTEEQINDFKEAFS--FFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN 78 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~--~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 78 (148)
+++.++...+.-.|. .+|+.+.|.++.--..-+|..+.-+...+.++.+|.... +.+|.+.+..|..++...+.
T Consensus 101 ~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evls 176 (434)
T KOG4301|consen 101 QIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVLS 176 (434)
T ss_pred cccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHc
Confidence 455566555555554 457888888888888888877766677788888888874 55777777777777665443
No 167
>KOG4403|consensus
Probab=78.69 E-value=14 Score=27.06 Aligned_cols=96 Identities=19% Similarity=0.224 Sum_probs=60.7
Q ss_pred CCCCCcCHHHHHHHHHHc---C-CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCC
Q psy12851 23 QGDGRIPIHELGTVMRFL---G-LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQ 98 (148)
Q Consensus 23 ~~~g~i~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 98 (148)
.|+...+..+|+.+.... + -+..-+.|+.|-+.+|.+.+|.|+.+|=-.+++.-+........-...|.. .|
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~----dD 115 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG----DD 115 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC----Cc
Confidence 355556677776654332 2 355677789999999999999999887666666544333332222223332 45
Q ss_pred CcccHHHHHHHHHHhC-CCCCHHHH
Q psy12851 99 GYICADELRHVMTTLG-ERLSEDEV 122 (148)
Q Consensus 99 g~I~~~e~~~~l~~~~-~~~~~~~~ 122 (148)
..|+.+++........ .+.+.++.
T Consensus 116 ~~ItVedLWeaW~~Sev~nWT~e~t 140 (575)
T KOG4403|consen 116 KHITVEDLWEAWKESEVHNWTNERT 140 (575)
T ss_pred cceeHHHHHHHHHhhhhhcchHHHH
Confidence 6799999988876542 44554443
No 168
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=78.08 E-value=7.6 Score=19.96 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Q psy12851 25 DGRIPIHELGTVMRFLGLTPTEAELLDLIREID 57 (148)
Q Consensus 25 ~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~ 57 (148)
+..+|.+|+...+..++-.++..++..+|..+-
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 346888999999999988888888888887663
No 169
>PLN02223 phosphoinositide phospholipase C
Probab=78.02 E-value=19 Score=27.39 Aligned_cols=13 Identities=0% Similarity=0.153 Sum_probs=8.0
Q ss_pred CcccHHHHHHHhc
Q psy12851 135 GRINYEDFVTLMT 147 (148)
Q Consensus 135 g~i~~~ef~~~l~ 147 (148)
+.++.+.|..+|.
T Consensus 79 ~~l~~~~f~~~L~ 91 (537)
T PLN02223 79 RCLELDHLNEFLF 91 (537)
T ss_pred cccCHHHHHHHhc
Confidence 4466666666654
No 170
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=77.73 E-value=12 Score=21.90 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=36.1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 87 KQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 87 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
..+|..+...++..+|.+++..++...|..+.+..+..+++.+.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 34566666667778999999999999999888888888888775
No 171
>PRK01844 hypothetical protein; Provisional
Probab=76.74 E-value=9.4 Score=20.37 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=27.9
Q ss_pred CcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 27 RIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
.|+.+.++......|.++++..++++.+.+
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 699999999999999999999999998877
No 172
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=76.54 E-value=6 Score=22.40 Aligned_cols=53 Identities=11% Similarity=-0.023 Sum_probs=31.0
Q ss_pred CCccchHHHHHHHHhhcC-CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12851 61 RGTIDFPEFLTVMARKLN-TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113 (148)
Q Consensus 61 ~~~i~~~ef~~~~~~~~~-~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 113 (148)
+|.++-.|-..+-..... ..........+...+........+..++.+.+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 778887776554433222 12234455666666665555667777777776653
No 173
>KOG4286|consensus
Probab=76.36 E-value=30 Score=27.54 Aligned_cols=129 Identities=16% Similarity=0.158 Sum_probs=77.5
Q ss_pred HHHHHHHhcCC-CCCCcCHHHHHHHHH--------HcCC----CCCHHH-HHHHHHHhCcCCCCccchHHHHHHHHhhcC
Q psy12851 13 FKEAFSFFNRQ-GDGRIPIHELGTVMR--------FLGL----TPTEAE-LLDLIREIDVNQRGTIDFPEFLTVMARKLN 78 (148)
Q Consensus 13 l~~~f~~~d~~-~~g~i~~~e~~~~l~--------~~~~----~~~~~~-~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~ 78 (148)
...+|..++-. ++..+...+....|- +.|. ++..+. ++.+++.+|+..+|.|..-+|...+..+ .
T Consensus 422 ~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~l-c 500 (966)
T KOG4286|consen 422 ALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISL-C 500 (966)
T ss_pred HHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHH-h
Confidence 45667766643 344566655554442 1222 222222 4678899999999999988887766643 3
Q ss_pred CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-------h------C-CCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT-------L------G-ERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 79 ~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~-------~------~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
.....+.++.+|.....++.-.+ ...|..+|.. + | .++.+ .+...|. ..++--.|++..|+.
T Consensus 501 k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep-svrsCF~--~v~~~pei~~~~f~d 576 (966)
T KOG4286|consen 501 KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP-SVRSCFQ--FVNNKPEIEAALFLD 576 (966)
T ss_pred cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh-HHHHHHH--hcCCCCcchHHHHHH
Confidence 33456778899999876655443 5555554442 2 2 34443 3455565 335555788888887
Q ss_pred Hh
Q psy12851 145 LM 146 (148)
Q Consensus 145 ~l 146 (148)
.+
T Consensus 577 w~ 578 (966)
T KOG4286|consen 577 WM 578 (966)
T ss_pred Hh
Confidence 65
No 174
>KOG3449|consensus
Probab=76.19 E-value=13 Score=21.65 Aligned_cols=55 Identities=13% Similarity=0.269 Sum_probs=43.5
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 14 ~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
...|..++..++...+..++..+|...|.....+.++.+++.+. |+ +.+|.+.--
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA~G 58 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIAAG 58 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHHHh
Confidence 44566667777778999999999999999999999999998873 33 677766543
No 175
>PLN02222 phosphoinositide phospholipase C 2
Probab=76.09 E-value=24 Score=27.20 Aligned_cols=63 Identities=13% Similarity=0.271 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCC--CCCHHHHHHHHHHhCc-CCCCccchHHHHHHHHh
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL--TPTEAELLDLIREIDV-NQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~ef~~~~~~ 75 (148)
..+..+|..+-. ++.|+.++|..+|..... ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 356677777743 479999999999987643 3466777788877532 23567999999999874
No 176
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=75.70 E-value=4.4 Score=16.00 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=10.0
Q ss_pred cCCCCCCcCHHHHHHH
Q psy12851 21 NRQGDGRIPIHELGTV 36 (148)
Q Consensus 21 d~~~~g~i~~~e~~~~ 36 (148)
|-+++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4567777777776553
No 177
>PRK01844 hypothetical protein; Provisional
Probab=75.04 E-value=11 Score=20.17 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=28.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 99 GYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 99 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
--|+.+-++.++..+|.++++..+..+.+..
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 4699999999999999999999999998876
No 178
>KOG3449|consensus
Probab=73.94 E-value=15 Score=21.38 Aligned_cols=44 Identities=11% Similarity=0.314 Sum_probs=37.5
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 87 KQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 87 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
..+|...+..++-.-+..+++.++...|....++.+..++..+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 45677777777778999999999999999999999999998774
No 179
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.65 E-value=21 Score=22.90 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHH------HhCcCCCCccchHHHHHHHHhhcC-----
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIR------EIDVNQRGTIDFPEFLTVMARKLN----- 78 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~ef~~~~~~~~~----- 78 (148)
...+++.|..||+..--.++..++..++..-+.-.....|..+.. .+.. . ++.+|+..+.....
T Consensus 52 r~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~---e--sf~~ylW~fv~~~Pi~~~~ 126 (179)
T TIGR00624 52 RENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQ---N--DLVEFLWSFVNHQPQPRQR 126 (179)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHH---c--cHHHHHHhccCCCCccCCc
Confidence 456889999999988888999999998887766666655544332 2211 1 77777765532111
Q ss_pred -----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q psy12851 79 -----TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE 115 (148)
Q Consensus 79 -----~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 115 (148)
.+...+....+.+.+-+.|-..+...-...+|++.|.
T Consensus 127 ~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt~~ysfmqA~G~ 168 (179)
T TIGR00624 127 PTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGM 168 (179)
T ss_pred cccccCCCCCHHHHHHHHHHHHcCCeecChHHHHHHHHHHCC
Confidence 1122334556666666667777777777777777773
No 180
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=73.58 E-value=13 Score=20.58 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=23.6
Q ss_pred cchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh
Q psy12851 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113 (148)
Q Consensus 64 i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~ 113 (148)
++..|++.+.... ..+-.......+...+-.+.-...+.++-..++..+
T Consensus 15 iT~~eLlkyskqy-~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 15 ITAKELLKYSKQY-NISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred CCHHHHHHHHHHh-CCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 5555555555422 223334445555555544444455555555555444
No 181
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.06 E-value=12 Score=19.84 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
+-.|+.+-++.++..+|.++++..+..+++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34699999999999999999999999888764
No 182
>KOG1954|consensus
Probab=72.69 E-value=11 Score=27.33 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHH
Q psy12851 85 EIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFV 143 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (148)
....+|..+.+ -+|.|+-..-+.-+... .++.+.+-.+++..|.|.+|-++-+||.
T Consensus 445 ~yde~fy~l~p-~~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 445 TYDEIFYTLSP-VNGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred chHhhhhcccc-cCceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 46677888876 67889888777766544 4788899999999999999999999995
No 183
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=71.41 E-value=11 Score=18.57 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
..++.++...|+..|.. +.+.+..+...+...+| ++...|...|...
T Consensus 5 ~~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~nr 51 (59)
T cd00086 5 TRFTPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQNR 51 (59)
T ss_pred CcCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHHH
Confidence 35788899999999987 45788899988877765 7777787777543
No 184
>KOG4004|consensus
Probab=70.75 E-value=1.8 Score=28.02 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy12851 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVM 110 (148)
Q Consensus 61 ~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l 110 (148)
+|.++-.|...+-.... .-+..+...|...|.|+||.|+.+|....+
T Consensus 202 d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 57777777655443321 223456777888888888888877776554
No 185
>PLN02223 phosphoinositide phospholipase C
Probab=70.43 E-value=38 Score=25.85 Aligned_cols=66 Identities=9% Similarity=-0.016 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHc----C-CCCCHHHHHHHHHHhCcCC--------CCccchHHHHHHHHh
Q psy12851 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFL----G-LTPTEAELLDLIREIDVNQ--------RGTIDFPEFLTVMAR 75 (148)
Q Consensus 9 ~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~----~-~~~~~~~~~~~~~~~~~~~--------~~~i~~~ef~~~~~~ 75 (148)
....+..+|..+ ..+.|.++..++..+|.-+ | ...+.++...++..+-... .+.++.+.|..++..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 345677788888 4678999999999988332 2 3455666666665543221 256999999998854
No 186
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=69.39 E-value=13 Score=19.43 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=30.7
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCC
Q psy12851 24 GDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 60 (148)
.++.++..++...+..-|...+.+.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4567889999998888888888899998888887654
No 187
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=68.30 E-value=18 Score=25.74 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 97 KQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 97 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
..|.||++|-...++..-...+.+.+..+++.++ ||-+||.+++
T Consensus 299 R~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 299 RSGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HcCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 4677888888777777544556677777777775 7777787664
No 188
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=67.93 E-value=21 Score=20.65 Aligned_cols=30 Identities=10% Similarity=0.437 Sum_probs=27.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
||.+++.++|...|..+.+..+..+++.+.
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa 46 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN 46 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc
Confidence 999999999999999999999999988874
No 189
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=67.71 E-value=13 Score=18.24 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=34.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIRE 55 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 55 (148)
..+|.+++..|+..|.. +.+++..+...+...+ +++...|...|..
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l--~l~~~~V~~WF~n 50 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKEL--GLTERQVKNWFQN 50 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHH--TSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hccccccccccccccc--cccccccccCHHH
Confidence 35789999999999985 4577888888877765 4667777776653
No 190
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=67.52 E-value=33 Score=22.69 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC---CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCC-CCH-HH
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFLG---LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTP-DST-EE 85 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~-~~~-~~ 85 (148)
.++.++....-..+.|.|+..|+...++... -..+++++.+....+..-+.| +....|-.-.......+ ... ..
T Consensus 97 ~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g-~~l~~~~sg~~vv~s~~~~e~~~~ 175 (223)
T PF04157_consen 97 VQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG-FRLRKFGSGVKVVQSVPYSELSKD 175 (223)
T ss_dssp HHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS-EEEEEETTTEEEEECST-CHH-HH
T ss_pred HHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC-eEEEEeCCCcEEEEeCCchhhhHH
Confidence 3444455544445556777777777766532 134666666666666555444 33333321111112222 222 44
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
...+.........|.+|..++..-+. ++.......+..+
T Consensus 176 ~~~il~~~~~~~~g~vt~~~l~~~~~-----ws~~~a~~~L~~~ 214 (223)
T PF04157_consen 176 QSRILELAEEENGGGVTASELAEKLG-----WSVERAKEALEEL 214 (223)
T ss_dssp HHHHHHHH--TTTSEEEHHHHHHHHT-----B-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 55566666344668899888887663 5555555555443
No 191
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=67.19 E-value=10 Score=19.53 Aligned_cols=26 Identities=8% Similarity=0.331 Sum_probs=18.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q psy12851 100 YICADELRHVMTTLGERLSEDEVNEM 125 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~~~~~~~~~ 125 (148)
.|+.++|..+++.....++.+++...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888887777777776654
No 192
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=67.18 E-value=20 Score=19.93 Aligned_cols=70 Identities=17% Similarity=0.115 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 43 TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
.++..+....++..-.+ ...|.|.+|...+..... .....+...+=..+|--.++.||.-||--+.+-++
T Consensus 3 rITK~eA~~FW~~~Fg~-r~IVPW~~F~~~L~~~h~-~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFq 72 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFGK-RTIVPWSEFRQALQKVHP-ISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQ 72 (85)
T ss_dssp --SSHHHHHHHHHHHTT--SEEEHHHHHHHHHHHS---SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT-
T ss_pred eeccHHHHHHHHHHCCC-CeEeeHHHHHHHHHHhcC-CCchHHHHHHHHHHhcccCCccchhhhHHHHHHHh
Confidence 34555556666554332 345788888877774433 23323334444566777778888777766655544
No 193
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=67.10 E-value=26 Score=26.33 Aligned_cols=100 Identities=14% Similarity=0.175 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCC-CccchHHHHHHHHhhcCCCCCHH
Q psy12851 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR-GTIDFPEFLTVMARKLNTPDSTE 84 (148)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~ef~~~~~~~~~~~~~~~ 84 (148)
....+.....+|+..-+.+...++..+++.++.++|......+--..|.. +.+. ..+.|.+++......+. ...
T Consensus 480 ~~q~l~~~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~--~a~s~~gv~yl~v~~~i~sel~---D~d 554 (612)
T COG5069 480 VWQVLRSNTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGD--PAGSVSGVFYLDVLKGIHSELV---DYD 554 (612)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccC--CccccccchHHHHHHHHhhhhc---Chh
Confidence 33445555667777656566679999999999999887765554334432 2222 24566666666554433 233
Q ss_pred HHHHHHHhhcCCCCC---cccHHHHHHHH
Q psy12851 85 EIKQAFQVFDKHKQG---YICADELRHVM 110 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g---~I~~~e~~~~l 110 (148)
.++.+|..++.=.++ .|+...++...
T Consensus 555 ~v~~~~~~f~diad~rsl~is~~ilRs~~ 583 (612)
T COG5069 555 LVTRGFTEFDDIADARSLAISSKILRSLG 583 (612)
T ss_pred hhhhhHHHHHHhhhhhhhhccHHHHHHhh
Confidence 455555555432222 35544554443
No 194
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=66.64 E-value=16 Score=18.65 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=26.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCC----cCHHHHHHHHHHcCC
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGR----IPIHELGTVMRFLGL 42 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~----i~~~e~~~~l~~~~~ 42 (148)
+.+|.++...++..|... |+ .+..+...+...+|+
T Consensus 6 T~Ft~~Q~~~Le~~fe~~-----~y~~~~~~~~~r~~la~~lgl 44 (58)
T TIGR01565 6 TKFTAEQKEKMRDFAEKL-----GWKLKDKRREEVREFCEEIGV 44 (58)
T ss_pred CCCCHHHHHHHHHHHHHc-----CCCCCCCCHHHHHHHHHHhCC
Confidence 357899999999999765 45 777777777776654
No 195
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=64.82 E-value=26 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 88 QAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 88 ~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.+|...-..++..+|.+++..++...|..+.+..+..+++.+.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 3455555556677999999999999998888888888888775
No 196
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=63.63 E-value=28 Score=22.53 Aligned_cols=103 Identities=13% Similarity=0.237 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHH------HhCcCCCCccchHHHHHHHHhhc------
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIR------EIDVNQRGTIDFPEFLTVMARKL------ 77 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~~ef~~~~~~~~------ 77 (148)
...+++.|..||+..--.++.+++..++..-+.-.....|..+.. .+... .-+|.+|+..+....
T Consensus 53 re~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e---~gSf~~ylW~fv~~~p~~~~~ 129 (187)
T PRK10353 53 RENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQN---GEPFADFVWSFVNHQPQVTQA 129 (187)
T ss_pred HHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHh---cCCHHHHHhhccCCCcccCCc
Confidence 456889999999988888899999998877665555555544332 22111 236777776552211
Q ss_pred ----CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q psy12851 78 ----NTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE 115 (148)
Q Consensus 78 ----~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 115 (148)
..+...+....+.+.+-+.|-..+...-...+|++.|.
T Consensus 130 ~~~~~~P~~t~~S~~lskdLKkrGFkFvGpt~~ysfmqA~G~ 171 (187)
T PRK10353 130 TTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGL 171 (187)
T ss_pred cchhcCCCCCHHHHHHHHHHHHcCCcccCcHHHHHHHHHHCC
Confidence 01222233445555555556666666667777777663
No 197
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=62.78 E-value=33 Score=21.00 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=23.2
Q ss_pred CCcccHHHHHHHHHH-hCCCCCHHHHHHHHHhhCcC
Q psy12851 98 QGYICADELRHVMTT-LGERLSEDEVNEMIQEADIN 132 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~-~~~~~~~~~~~~~~~~~d~~ 132 (148)
.+.|+.+.|+.+|+. +...++++-...+|..|-..
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 458999999999987 45668888888888877543
No 198
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=62.76 E-value=23 Score=21.60 Aligned_cols=49 Identities=8% Similarity=0.206 Sum_probs=39.1
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCCHHHHHHHHHhhCcCCCC-cccHHHHHHH
Q psy12851 97 KQGYICADELRHVMTTLG---------ERLSEDEVNEMIQEADINGDG-RINYEDFVTL 145 (148)
Q Consensus 97 ~~g~I~~~e~~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 145 (148)
|+..||.+||.++.+.-. ..+.++++..+.+.+...+.+ .++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 678899999999997632 347789999999999876666 4999887765
No 199
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=62.08 E-value=17 Score=17.42 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 104 ~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
+|....|..+| +++.++..++..... ...++.++.++
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 56677777777 778888888888765 33455666554
No 200
>KOG4070|consensus
Probab=61.54 E-value=18 Score=22.47 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhc----CCCCC-CcCHHHHHHHHHHcC----CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhc---
Q psy12851 10 INDFKEAFSFFN----RQGDG-RIPIHELGTVMRFLG----LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKL--- 77 (148)
Q Consensus 10 ~~~l~~~f~~~d----~~~~g-~i~~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~--- 77 (148)
+..+.+.|..|. +..+| .|+-.++..+++..+ -..+..+....|..+....-+.++|++|...+..+.
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela~~R 90 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELATKR 90 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHHHhh
Confidence 344555555553 33333 377777888777643 345555566667666555567899999976665432
Q ss_pred -CCCCCHHHHHHHHHhhc
Q psy12851 78 -NTPDSTEEIKQAFQVFD 94 (148)
Q Consensus 78 -~~~~~~~~~~~~f~~~d 94 (148)
.....++.+..+++.+.
T Consensus 91 ~k~Ks~ee~l~~I~~lla 108 (180)
T KOG4070|consen 91 FKGKSKEEALDAICQLLA 108 (180)
T ss_pred hcCCCHHHHHHHHHHHHh
Confidence 12233445555555554
No 201
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=61.37 E-value=15 Score=19.74 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=6.9
Q ss_pred CCccchHHHHHHH
Q psy12851 61 RGTIDFPEFLTVM 73 (148)
Q Consensus 61 ~~~i~~~ef~~~~ 73 (148)
.|+|.-+||...+
T Consensus 28 ~Gkv~~ee~n~~~ 40 (75)
T TIGR02675 28 SGKLRGEEINSLL 40 (75)
T ss_pred cCcccHHHHHHHH
Confidence 4555555555544
No 202
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=60.39 E-value=32 Score=20.01 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=39.2
Q ss_pred HhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHh---C-CCCCHHHHHHHHHhhC
Q psy12851 55 EIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL---G-ERLSEDEVNEMIQEAD 130 (148)
Q Consensus 55 ~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~---~-~~~~~~~~~~~~~~~d 130 (148)
.+|...+..|+.++...++..-. -|...|..-..-||..-+.+++... | ..++..-+..+++.++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~-----------~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGR-----------EFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCC-----------eEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 45677778889888877776321 2344454333346666666655332 1 2345566666666665
Q ss_pred cCCCC
Q psy12851 131 INGDG 135 (148)
Q Consensus 131 ~~~~g 135 (148)
..-.|
T Consensus 80 ~~~q~ 84 (107)
T TIGR01848 80 GSMQS 84 (107)
T ss_pred hhHHH
Confidence 44433
No 203
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=60.34 E-value=39 Score=20.99 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH----cCCCCCHHHH
Q psy12851 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRF----LGLTPTEAEL 49 (148)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~----~~~~~~~~~~ 49 (148)
..+..+....+..|..+.++||..+++.++-. ++..++.++.
T Consensus 66 ~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~ 111 (148)
T PF12486_consen 66 TQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQ 111 (148)
T ss_pred HHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 45566777778888888888999999887643 4444554443
No 204
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=60.05 E-value=36 Score=20.49 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=36.1
Q ss_pred CCccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
|++.+|+++.+.+...--.+-. ..|.+|..++.... ..+..-+...++.+
T Consensus 1 Ma~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~T-----GasR~Tvk~~lreL 50 (127)
T PF06163_consen 1 MARVFTPEEREELKARIVELVR-EHGRITIKQLVAKT-----GASRNTVKRYLREL 50 (127)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHH-----CCCHHHHHHHHHHH
Confidence 7889999999998776666633 67899999997753 45555566655554
No 205
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=58.76 E-value=31 Score=19.41 Aligned_cols=82 Identities=15% Similarity=0.209 Sum_probs=40.3
Q ss_pred CCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcC--CCCCHHHHHHHHHhhcCCCCCc
Q psy12851 24 GDGRIPIHELGTVMRFL-GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLN--TPDSTEEIKQAFQVFDKHKQGY 100 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~--~~~~~~~~~~~f~~~d~~~~g~ 100 (148)
-||.++..|...+-..+ ...........+...+........++.+|...+..... +......+..++...-. ||.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r~~~l~~l~~vA~A--DG~ 89 (106)
T cd07316 12 ADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRRACGGRPELLLQLLEFLFQIAYA--DGE 89 (106)
T ss_pred ccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--cCC
Confidence 46888887765533222 12233333334444443222333677777777765431 11123334445555543 466
Q ss_pred ccHHHHH
Q psy12851 101 ICADELR 107 (148)
Q Consensus 101 I~~~e~~ 107 (148)
++..|-.
T Consensus 90 ~~~~E~~ 96 (106)
T cd07316 90 LSEAERE 96 (106)
T ss_pred CCHHHHH
Confidence 6666544
No 206
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=58.44 E-value=35 Score=19.86 Aligned_cols=31 Identities=23% Similarity=0.436 Sum_probs=28.0
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 100 YICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.||.+.+..++...|..+.+..+..++..+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~ 46 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 7999999999999999999988888888764
No 207
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=57.83 E-value=28 Score=21.47 Aligned_cols=22 Identities=9% Similarity=0.373 Sum_probs=18.4
Q ss_pred ccccHHHHHHHHHHHHHhcCCC
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQG 24 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~ 24 (148)
++||++++++|..-...+|+++
T Consensus 22 ~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 22 AKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HhCCHHHHHHHHHHHHhhCCCc
Confidence 5789999999998888888765
No 208
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=57.13 E-value=16 Score=19.94 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=6.9
Q ss_pred CCccchHHHHHHHH
Q psy12851 61 RGTIDFPEFLTVMA 74 (148)
Q Consensus 61 ~~~i~~~ef~~~~~ 74 (148)
.|.|+|.+....+.
T Consensus 19 ~G~lT~~eI~~~L~ 32 (82)
T PF03979_consen 19 KGYLTYDEINDALP 32 (82)
T ss_dssp HSS-BHHHHHHH-S
T ss_pred cCcCCHHHHHHHcC
Confidence 45566666555554
No 209
>KOG1954|consensus
Probab=57.06 E-value=32 Score=25.15 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=37.5
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHH
Q psy12851 13 FKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLT 71 (148)
Q Consensus 13 l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 71 (148)
..++|..+.+ -+|+|+-..-..-+- +.+++.+.+-++|...|.+.+|.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 3456666643 566777655554332 3467777788888888888888888888754
No 210
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=57.04 E-value=27 Score=18.20 Aligned_cols=37 Identities=19% Similarity=0.495 Sum_probs=21.3
Q ss_pred hhcCCCCCcccHHHHHHHHHH----------hCCCCCHHHHHHHHHh
Q psy12851 92 VFDKHKQGYICADELRHVMTT----------LGERLSEDEVNEMIQE 128 (148)
Q Consensus 92 ~~d~~~~g~I~~~e~~~~l~~----------~~~~~~~~~~~~~~~~ 128 (148)
.+|...+..|+.+++.++... .|..++...+..++-.
T Consensus 11 LYDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e 57 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILE 57 (64)
T ss_pred cccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHH
Confidence 456666677777777776653 2444555555544433
No 211
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=56.70 E-value=30 Score=19.56 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=39.5
Q ss_pred CCCCcCHHHHHHHHHHcC----C-CCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCC
Q psy12851 24 GDGRIPIHELGTVMRFLG----L-TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQ 98 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~----~-~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 98 (148)
.||.++..|...+...+. + ......+..++......- ...+..++...+.....+......+..++..... |
T Consensus 15 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~a--D 91 (111)
T cd07176 15 ADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAA--D 91 (111)
T ss_pred hccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHc--c
Confidence 467888888777665542 1 233444555554443220 0233455555555443322223344445555553 4
Q ss_pred CcccHHHH
Q psy12851 99 GYICADEL 106 (148)
Q Consensus 99 g~I~~~e~ 106 (148)
|.++..|-
T Consensus 92 G~~~~~E~ 99 (111)
T cd07176 92 GEVDPEER 99 (111)
T ss_pred CCCCHHHH
Confidence 55665543
No 212
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.67 E-value=45 Score=20.57 Aligned_cols=92 Identities=20% Similarity=0.192 Sum_probs=60.2
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHH--HcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHh
Q psy12851 15 EAFSFFNRQGDGRIPIHELGTVMR--FLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQV 92 (148)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~ 92 (148)
-+|+.+.. +|.++..|...+.. +-.+..+.+++..+......-+...+++-.|...+...+......+.+...++.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e~R~eli~~mweI 111 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEEQRLELIGLMWEI 111 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56677654 56788777655322 225788888888888888777777899899988887655433333445555666
Q ss_pred hcCCCCCcccHHHHHHHH
Q psy12851 93 FDKHKQGYICADELRHVM 110 (148)
Q Consensus 93 ~d~~~~g~I~~~e~~~~l 110 (148)
.- .||.++..|-.-+.
T Consensus 112 a~--ADg~l~e~Ed~vi~ 127 (148)
T COG4103 112 AY--ADGELDESEDHVIW 127 (148)
T ss_pred HH--ccccccHHHHHHHH
Confidence 54 45667766654444
No 213
>KOG0506|consensus
Probab=56.52 E-value=48 Score=24.96 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=44.9
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh---Cc-----CCCCcccHHHHHHHh
Q psy12851 87 KQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA---DI-----NGDGRINYEDFVTLM 146 (148)
Q Consensus 87 ~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~g~i~~~ef~~~l 146 (148)
..+|..+-...++.|+.-.|.++|+++|..-++..+..++..+ +. ..-+.++.+-|-+++
T Consensus 89 DLLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 4467777666679999999999999999888888777776543 32 223457888887765
No 214
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=56.06 E-value=76 Score=23.95 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHc
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFL 40 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~ 40 (148)
|+..|-.-+.-+|+..|.++--.++.++++.+|..+
T Consensus 122 LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v 157 (502)
T PF05872_consen 122 LNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV 157 (502)
T ss_pred cchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH
Confidence 577777888999999999988889999999988765
No 215
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=56.03 E-value=37 Score=19.38 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=22.3
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHH
Q psy12851 28 IPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
+...++..+|.-+...++++++..+...+-..+...++-.+.-..+.
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~ 66 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAIT 66 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHH
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 55556666666566666666666555555333333333333333333
No 216
>KOG3077|consensus
Probab=54.68 E-value=67 Score=22.03 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=35.7
Q ss_pred HHHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 85 EIKQAFQVF-DKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 85 ~~~~~f~~~-d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
.+...|..+ |+..+..|..+-+..+|..+|..+.+-.+..+.-.+....-|..+.++|+.
T Consensus 65 ~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~ 125 (260)
T KOG3077|consen 65 RLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLK 125 (260)
T ss_pred HHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHH
Confidence 344444443 555556777777888888887554443333333445556666777777765
No 217
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=54.38 E-value=43 Score=19.70 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHH
Q psy12851 16 AFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTV 72 (148)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~ 72 (148)
.|..+...++..+|..++..+|...|.......+..+.+.+.. .+..+.+..
T Consensus 8 AYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa~ 59 (112)
T PTZ00373 8 AYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIAA 59 (112)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 3444445566779999999999999999999888888888742 566776653
No 218
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=53.93 E-value=5.8 Score=25.46 Aligned_cols=43 Identities=16% Similarity=0.371 Sum_probs=33.7
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHH
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~ 124 (148)
..+.++.+|..||+.+--..+.+++.+++...|+.-...-+..
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 5678999999999988888999999999988775444443333
No 219
>KOG4286|consensus
Probab=53.81 E-value=1.1e+02 Score=24.73 Aligned_cols=94 Identities=12% Similarity=0.134 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHhCcCCC-CccchHHHHHHHHhhc-------C-----CCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy12851 44 PTEAELLDLIREIDVNQR-GTIDFPEFLTVMARKL-------N-----TPDSTEEIKQAFQVFDKHKQGYICADELRHVM 110 (148)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~-~~i~~~ef~~~~~~~~-------~-----~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l 110 (148)
.+..-+..+|..++..++ ..++..+.+..+.... . +...+-.+..+++.||+.++|.|..-+|+-.+
T Consensus 417 v~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~ 496 (966)
T KOG4286|consen 417 LSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGI 496 (966)
T ss_pred ccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhH
Confidence 444556677777766554 3444444444332211 0 11123456778999999999999999999888
Q ss_pred HHhCCCCCHHHHHHHHHhhCcCCCCcc
Q psy12851 111 TTLGERLSEDEVNEMIQEADINGDGRI 137 (148)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~d~~~~g~i 137 (148)
-.+.....++....+|..+...+...+
T Consensus 497 i~lck~~leek~~ylF~~vA~~~sq~~ 523 (966)
T KOG4286|consen 497 ISLCKAHLEDKYRYLFKQVASSTSQCD 523 (966)
T ss_pred HHHhcchhHHHHHHHHHHHcCchhhHH
Confidence 777666667777789988876655443
No 220
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=53.30 E-value=46 Score=21.36 Aligned_cols=31 Identities=10% Similarity=0.325 Sum_probs=14.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy12851 97 KQGYICADELRHVMTTLGERLSEDEVNEMIQ 127 (148)
Q Consensus 97 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~ 127 (148)
.+|.+..+++...++.-+..++.+++..+..
T Consensus 30 ~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~ 60 (179)
T PRK00819 30 EEGWVDIDALIEALAKAYKWVTRELLEAVVE 60 (179)
T ss_pred CCCCEEHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 4455555555554443333345555554444
No 221
>KOG0506|consensus
Probab=53.14 E-value=60 Score=24.52 Aligned_cols=59 Identities=24% Similarity=0.389 Sum_probs=43.1
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh---C-----cCCCCccchHHHHHHH
Q psy12851 15 EAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI---D-----VNQRGTIDFPEFLTVM 73 (148)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~---~-----~~~~~~i~~~ef~~~~ 73 (148)
-+|..+...+++.++..-|..+|++.|+.-+++.+..++..+ + ......++-+.|..+.
T Consensus 90 LLFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI 156 (622)
T KOG0506|consen 90 LLFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCI 156 (622)
T ss_pred hhhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhh
Confidence 357777655679999999999999999988888877776554 2 1223567777776654
No 222
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=53.05 E-value=70 Score=21.76 Aligned_cols=46 Identities=11% Similarity=0.312 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
||..+++.+++++..++. .+|.++..++..- +..++..+...++.+
T Consensus 177 LSySEleAv~~IL~~L~~-~egrlse~eLAer-----lGVSRs~ireAlrkL 222 (251)
T TIGR02787 177 LSYSELEAVEHIFEELDG-NEGLLVASKIADR-----VGITRSVIVNALRKL 222 (251)
T ss_pred ccHhHHHHHHHHHHHhcc-ccccccHHHHHHH-----HCCCHHHHHHHHHHH
Confidence 566677777777777632 2567777777653 235555555555555
No 223
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=52.74 E-value=49 Score=19.82 Aligned_cols=43 Identities=14% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHc-CCCCCHHHHHHHHHHh
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFL-GLTPTEAELLDLIREI 56 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~-~~~~~~~~~~~~~~~~ 56 (148)
.+|..+|++|-. +.|+.+.+..++... |..++...+.-++..+
T Consensus 37 ~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~ 80 (122)
T PF06648_consen 37 DKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRV 80 (122)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhcCHHHHHHHHHHH
Confidence 455666666632 456666666666554 3566666665555544
No 224
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=52.62 E-value=39 Score=21.80 Aligned_cols=36 Identities=19% Similarity=0.498 Sum_probs=20.5
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 95 KHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 95 ~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.+.+|.+..+++.+.+..-+..++.+++..++..-+
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 456788888888777776666677777777776543
No 225
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=52.19 E-value=17 Score=23.44 Aligned_cols=43 Identities=14% Similarity=0.258 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHH
Q psy12851 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDL 52 (148)
Q Consensus 10 ~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 52 (148)
.+.+++.|..||+..--.++..++..++..-|.-..+..|..+
T Consensus 54 Re~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~ 96 (188)
T COG2818 54 REAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKAT 96 (188)
T ss_pred HHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHH
Confidence 4568999999999999999999999999888776666665443
No 226
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=51.55 E-value=49 Score=20.38 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCCHHHHHHHH----------HhhCcCCCCcccHHHHHHHh
Q psy12851 105 ELRHVMTTLGERLSEDEVNEMI----------QEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~~~----------~~~d~~~~g~i~~~ef~~~l 146 (148)
=+..-++++|..++++++..++ ..+-.+.+|..+...+.+++
T Consensus 94 ll~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~fl 145 (145)
T PF13623_consen 94 LLEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQFL 145 (145)
T ss_pred HHHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhhC
Confidence 3444556677777888777777 11234678888888777654
No 227
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=50.42 E-value=31 Score=16.92 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=22.3
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCC
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEADING 133 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~ 133 (148)
.|.|+..+|+..+. ++....-.+++.+|..+
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 67788888888873 67777777777777543
No 228
>PF13551 HTH_29: Winged helix-turn helix
Probab=50.13 E-value=46 Score=18.76 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=28.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH-H-HcCCCCCHHHHHHHHHH
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVM-R-FLGLTPTEAELLDLIRE 55 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l-~-~~~~~~~~~~~~~~~~~ 55 (148)
+++++...+.+.+.....++.+..+...+...+ . ..+..++..-+..++..
T Consensus 58 l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~~~~~~s~~ti~r~L~~ 110 (112)
T PF13551_consen 58 LSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEEFGIDVSPSTIRRILKR 110 (112)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhccCccCCHHHHHHHHHH
Confidence 566666666666665433322356666666643 2 24556666666555543
No 229
>PHA02105 hypothetical protein
Probab=48.46 E-value=37 Score=17.23 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHh---CCCCCHHHHHHHHHhhCcCC--CCcccHHHHHHHh
Q psy12851 101 ICADELRHVMTTL---GERLSEDEVNEMIQEADING--DGRINYEDFVTLM 146 (148)
Q Consensus 101 I~~~e~~~~l~~~---~~~~~~~~~~~~~~~~d~~~--~g~i~~~ef~~~l 146 (148)
++++++..++..- ..++..+.++.+-..|..-. .-.++|+||..++
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~ 55 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIM 55 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccc
Confidence 5666676666542 24455555555555554332 3357888887654
No 230
>COG5562 Phage envelope protein [General function prediction only]
Probab=48.44 E-value=15 Score=22.29 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=27.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 97 KQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 97 ~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.+|.|.....+.+..- .... +-..+...+..+..|..||++|++.+
T Consensus 53 ~~~~Il~~g~k~~~~V-~~~~---n~~~i~~al~~~qsGqttF~ef~~~l 98 (137)
T COG5562 53 SDGVILIKGVKKVVGV-AEVF---NTTLIKTALRRHQSGQTTFEEFCSAL 98 (137)
T ss_pred cCCEEEeeccccccce-eccc---CHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 3566665555554421 1112 23344445566778999999999865
No 231
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=47.99 E-value=73 Score=21.89 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=23.4
Q ss_pred CCccchHHHHHHHHhhc-CCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 61 RGTIDFPEFLTVMARKL-NTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 61 ~~~i~~~ef~~~~~~~~-~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
+|.|+-.|.. .....+ ......+.-+.+...+........+..++.+.+..
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 6677777665 222221 11112233333444454444444666666555544
No 232
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=47.80 E-value=52 Score=20.20 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQEADI 131 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (148)
.|.++++.+...+..++|++++..+++.++.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 4666777776666667777777777777654
No 233
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=47.45 E-value=38 Score=25.21 Aligned_cols=31 Identities=3% Similarity=0.070 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Q psy12851 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRF 39 (148)
Q Consensus 8 ~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (148)
++...+..++ .+-....+.-|.+||...+..
T Consensus 286 ~~~~~i~~ly-~~~~~~~~~pt~eEF~e~v~~ 316 (445)
T PF13608_consen 286 KEEDEIEHLY-MLCKKHGKLPTEEEFLEYVEE 316 (445)
T ss_pred HHHHHHHHHH-HHHHHhCCCCCHHHHHHHHHh
Confidence 3344556666 555556678889999888875
No 234
>PF15144 DUF4576: Domain of unknown function (DUF4576)
Probab=47.32 E-value=11 Score=20.41 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=26.1
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccc
Q psy12851 24 GDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTID 65 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (148)
.+|.-+..+|-.+|..+|-...+..+..+++.+.. +.|.+.
T Consensus 37 dS~k~~~p~fPkFLn~LGteIiEnAVefiLrSMtR-~tgF~E 77 (88)
T PF15144_consen 37 DSGKNPEPDFPKFLNLLGTEIIENAVEFILRSMTR-STGFME 77 (88)
T ss_pred ccCCCCCCchHHHHHHhhHHHHHHHHHHHHHHhhc-ccCcee
Confidence 34555566777777777777777777777777643 344443
No 235
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=46.70 E-value=84 Score=20.81 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=20.9
Q ss_pred CCCCcccHHHHHHHHHHhC---CCCCHHHHHHHHHhhCcCCCC
Q psy12851 96 HKQGYICADELRHVMTTLG---ERLSEDEVNEMIQEADINGDG 135 (148)
Q Consensus 96 ~~~g~I~~~e~~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g 135 (148)
.+.|.|+..|+...+.+.. ..++++++..+++.+..-+.|
T Consensus 109 ~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 109 KNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp TTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred cCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 3445666666666665432 235666666666666554443
No 236
>KOG0148|consensus
Probab=45.86 E-value=2.7 Score=28.65 Aligned_cols=73 Identities=25% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q psy12851 42 LTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE 115 (148)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 115 (148)
...+++-|..+|+.+.+-.+.+|=++|....+.... ...........|..+-.+=.-.|+.+.++..+..+|.
T Consensus 16 ~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p-~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGe 88 (321)
T KOG0148|consen 16 STVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAP-GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGE 88 (321)
T ss_pred hhhHHHHHHHHHHhccccccceeehhhhccccccCc-ccCCCCccccceeEEehhcchhcchHHHHHHhccccc
Confidence 344555566677776665555666666544433221 1122233444555555445556777777777777663
No 237
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=45.28 E-value=78 Score=20.02 Aligned_cols=47 Identities=9% Similarity=0.232 Sum_probs=29.0
Q ss_pred CHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 82 STEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 82 ~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
....+..++..+-..+...++..+|...|. .|..+|++++...+..+
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cG-VGV~VT~E~I~~~V~~~ 129 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACG-VGVVVTPEQIEAAVEKY 129 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTT-TT----HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcC-CCeEECHHHHHHHHHHH
Confidence 345677777777665556789888888774 67788999988877654
No 238
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=44.79 E-value=63 Score=18.86 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=32.0
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 89 AFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.+..+..- ...|+.+.++.++...|..+.+..+..++..+.
T Consensus 6 a~llL~~a-gkei~e~~l~~vl~aaGveve~~r~k~lvaaLe 46 (109)
T COG2058 6 AYLLLHLA-GKEITEDNLKSVLEAAGVEVEEARAKALVAALE 46 (109)
T ss_pred HHHHHHHc-cCcCCHHHHHHHHHHcCCCccHHHHHHHHHHhc
Confidence 34444432 338999999999999999999988888888775
No 239
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=44.72 E-value=62 Score=18.93 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=16.7
Q ss_pred cHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 102 CADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 102 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
+.+|++.++......+++++++.++...
T Consensus 80 ~~dElrai~~~~~~~~~~e~l~~ILd~l 107 (112)
T PRK14981 80 TRDELRAIFAKERYTLSPEELDEILDIV 107 (112)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3556666666555556666666666543
No 240
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.37 E-value=51 Score=21.26 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 22 RQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 22 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
.+.+|+++.+++...+..-+...+.+++..+...-
T Consensus 27 ~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~ 61 (186)
T PF01885_consen 27 MDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETD 61 (186)
T ss_dssp --TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-
T ss_pred cCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhC
Confidence 46789999999999888767778888888887764
No 241
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.77 E-value=54 Score=19.36 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=23.8
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
-+..|++.++..-+..+++++++.++.-.+
T Consensus 80 ~t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 80 RTPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CCHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 367789999988888888888888876543
No 242
>KOG0488|consensus
Probab=43.74 E-value=1e+02 Score=21.78 Aligned_cols=45 Identities=11% Similarity=0.188 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIRE 55 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 55 (148)
.+|..++..|++.|..- .||+..|=.++...+ ++++..+..+|..
T Consensus 178 aFT~~Ql~~LEkrF~~Q-----KYLS~~DR~~LA~~L--gLTdaQVKtWfQN 222 (309)
T KOG0488|consen 178 AFSDHQLFELEKRFEKQ-----KYLSVADRIELAASL--GLTDAQVKTWFQN 222 (309)
T ss_pred hhhHHHHHHHHHHHHHh-----hcccHHHHHHHHHHc--CCchhhHHHHHhh
Confidence 47889999999999765 588888877766664 5888888888865
No 243
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=43.25 E-value=58 Score=17.93 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=35.6
Q ss_pred CCCCcCHHHHHHHHHHcCCC-----CCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCC
Q psy12851 24 GDGRIPIHELGTVMRFLGLT-----PTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQ 98 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~ 98 (148)
-||.++..|...+...+... .....+..++...-.. ..+...+................+..++..... |
T Consensus 12 aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ia~a--D 86 (104)
T cd07177 12 ADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE---AGDLAALAALLKELPDAELREALLAALWEVALA--D 86 (104)
T ss_pred hcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh--c
Confidence 36888888877655443211 2223333344333221 223444444444322211223344445555553 4
Q ss_pred CcccHHHHH
Q psy12851 99 GYICADELR 107 (148)
Q Consensus 99 g~I~~~e~~ 107 (148)
|.++..|..
T Consensus 87 G~~~~~E~~ 95 (104)
T cd07177 87 GELDPEERA 95 (104)
T ss_pred cCCCHHHHH
Confidence 666655543
No 244
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=42.61 E-value=68 Score=18.60 Aligned_cols=43 Identities=5% Similarity=0.095 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 28 IPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
+|..++..+|...|.......+..+.+.+.. .+..+.+.....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHh
Confidence 9999999999999999999999888888732 577787765543
No 245
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=42.29 E-value=35 Score=15.14 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHHhCCCC
Q psy12851 100 YICADELRHVMTTLGERL 117 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~ 117 (148)
.++..+++..|+..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 366778888888877544
No 246
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=42.25 E-value=71 Score=18.68 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=41.1
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHh
Q psy12851 16 AFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 16 ~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~ 75 (148)
.|..+-..++..+|..++..+|...|.......+..+.+.+.. .+..+.+.....
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 3444445567789999999999999999988888888887742 567777765443
No 247
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=42.12 E-value=1.1e+02 Score=20.99 Aligned_cols=98 Identities=11% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCCcCHHHHHHHHHHc--CCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHH----HHHHHhhcCCC
Q psy12851 24 GDGRIPIHELGTVMRFL--GLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEI----KQAFQVFDKHK 97 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~----~~~f~~~d~~~ 97 (148)
-||.++..|+. +.+.+ .+.++.++-..+...+........++.+|+.-+..... ...+.+ ...|...= .
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~--~r~~l~~~lL~~l~~vA~--A 142 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG--GRFDLLRMFLEIQIQAAF--A 142 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH--h
Confidence 57999999987 33332 24555666334444444444555889998887765442 222222 34455544 4
Q ss_pred CCcccHHHHH---HHHHHhCCCCCHHHHHHHHHh
Q psy12851 98 QGYICADELR---HVMTTLGERLSEDEVNEMIQE 128 (148)
Q Consensus 98 ~g~I~~~e~~---~~l~~~~~~~~~~~~~~~~~~ 128 (148)
||.++..|-. ++...+| ++..+...+...
T Consensus 143 DG~l~~~E~~~L~~Ia~~Lg--is~~df~~~~~~ 174 (267)
T PRK09430 143 DGSLHPNERQVLYVIAEELG--FSRFQFDQLLRM 174 (267)
T ss_pred cCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 5778877643 3334445 677776666554
No 248
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=41.95 E-value=33 Score=18.74 Aligned_cols=39 Identities=8% Similarity=0.221 Sum_probs=19.1
Q ss_pred HHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcC
Q psy12851 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDK 95 (148)
Q Consensus 52 ~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~ 95 (148)
++.....++.+.++..+-...+. ......+..+|+.+..
T Consensus 42 il~~w~~n~~~~lt~~~~~~~i~-----~~d~~~~~ri~~FL~~ 80 (86)
T PF04433_consen 42 ILAEWRKNPNKYLTKTDARKLIK-----GIDVNKIRRIYDFLER 80 (86)
T ss_dssp HHHHHHHHTTS---HHHHHHHTT-----SSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcccHHHHHHHcc-----ccCHHHHHHHHHHHHH
Confidence 33333345566777777655554 1234566666666653
No 249
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=41.04 E-value=36 Score=14.92 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=9.7
Q ss_pred CCcccHHHHHHHHHH
Q psy12851 98 QGYICADELRHVMTT 112 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~ 112 (148)
.|.|+.+++..+..+
T Consensus 2 ~~~i~~~~~~d~a~r 16 (33)
T PF09373_consen 2 SGTISKEEYLDMASR 16 (33)
T ss_pred CceecHHHHHHHHHH
Confidence 466777777766654
No 250
>PF07199 DUF1411: Protein of unknown function (DUF1411); InterPro: IPR009850 This family represents a conserved region approximately 150 residues long that is sometimes repeated within some Babesia bovis proteins of unknown function.
Probab=40.18 E-value=1e+02 Score=20.05 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 15 EAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 15 ~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
+.-..+++.+.+.=..+.+...|.+-+--.....+.+-+..++......-.|+.|...+
T Consensus 126 ~~It~y~P~~~~f~vseNIVk~LNK~~~i~lp~~LA~~L~~i~tgk~~~~e~~~f~d~f 184 (194)
T PF07199_consen 126 KHITNYDPKNPIFAVSENIVKKLNKKGTIELPEDLAQQLCQIDTGKMRGYEWEVFTDCF 184 (194)
T ss_pred HHHHccCCCCcchhhHHHHHHHHcCCCCccchHHHHHHHhccccCccccchHHHHHHHH
Confidence 33344455445444455555555444433334444444445444444444444444443
No 251
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.74 E-value=92 Score=19.27 Aligned_cols=58 Identities=14% Similarity=0.152 Sum_probs=28.2
Q ss_pred HHHHHhCcCCCCccchHHH---HHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 51 DLIREIDVNQRGTIDFPEF---LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 51 ~~~~~~~~~~~~~i~~~ef---~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
.+|+.+.. +|.++-.|. ..++..... -..+.+..+......-+...++.-.|...+++
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~--i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r 94 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFG--IDGEELDALIEAGEEAGYEAIDLYSFTSVLKR 94 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45555544 344544433 333443322 22334555555554445556666666666654
No 252
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=39.72 E-value=40 Score=27.98 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=33.4
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCC
Q psy12851 24 GDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 60 (148)
--|.|+.+.+..+|.++|...+.+++..+|..++.+.
T Consensus 1134 MRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~~ 1170 (1301)
T PF05788_consen 1134 MRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLES 1170 (1301)
T ss_pred hhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhcccH
Confidence 4699999999999999999999999999999987653
No 253
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=38.57 E-value=72 Score=17.73 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQE 128 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 128 (148)
|+.+++..+.+-....++++++..+...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4566677766666666777766555443
No 254
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=38.43 E-value=1.4e+02 Score=21.41 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHH--HHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHH
Q psy12851 33 LGTVM--RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVM 110 (148)
Q Consensus 33 ~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l 110 (148)
|...+ .++|+...........+ .|.++.+|=+..+.. .......+.++.+++.++ ||.+||..++
T Consensus 276 ~~~y~~~~KfG~~~~~~~~s~~IR------~G~itReeal~~v~~-~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 276 FHDYLKYLKFGFGRATDHASIDIR------SGRITREEAIELVKE-YDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred HHHHHHHhhcCCCcCchHHHHHHH------cCCCCHHHHHHHHHH-hcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 44433 34677776666665554 578999998888775 222233467888888887 6778887765
No 255
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=37.94 E-value=75 Score=17.70 Aligned_cols=13 Identities=0% Similarity=0.117 Sum_probs=7.0
Q ss_pred ccchHHHHHHHHh
Q psy12851 63 TIDFPEFLTVMAR 75 (148)
Q Consensus 63 ~i~~~ef~~~~~~ 75 (148)
.++-.+...++..
T Consensus 39 ~~T~~Qv~~il~~ 51 (95)
T PF14771_consen 39 CFTCAQVKQILSL 51 (95)
T ss_pred ceeHHHHHHHHHH
Confidence 4555555555543
No 256
>cd03521 Link_domain_KIAA0527_like Link_domain_KIAA0527_like; this domain is found in the human protein KIAA0527. Sequence-wise, it is highly similar to the link domain. The link domain is a hyaluronan-binding (HA) domain. KIAA0527 contains a single link module. The KIAA0527 gene was originally cloned from human brain tissue.
Probab=37.47 E-value=62 Score=18.29 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=26.5
Q ss_pred hcCCCCCcccHHHHHHHHHHhCCCC-CHHHHHHHHHh
Q psy12851 93 FDKHKQGYICADELRHVMTTLGERL-SEDEVNEMIQE 128 (148)
Q Consensus 93 ~d~~~~g~I~~~e~~~~l~~~~~~~-~~~~~~~~~~~ 128 (148)
.-+++...++.+|-++.++..|..+ +..++...++.
T Consensus 6 ~~~~G~y~l~f~eA~~AC~~~gA~lAs~~QL~~AW~~ 42 (95)
T cd03521 6 ELENGSQGLGLRAARQSCASLGARLASAAELRRAVVE 42 (95)
T ss_pred eCCCCccccCHHHHHHHHHHcCCEeccHHHHHHHHHH
Confidence 3456778888888888888877544 66777777776
No 257
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=36.62 E-value=54 Score=15.67 Aligned_cols=21 Identities=33% Similarity=0.268 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHcCCCCCHHHH
Q psy12851 29 PIHELGTVMRFLGLTPTEAEL 49 (148)
Q Consensus 29 ~~~e~~~~l~~~~~~~~~~~~ 49 (148)
+..++..+.+..|+..+.+++
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 677888877778888777664
No 258
>KOG2301|consensus
Probab=36.51 E-value=44 Score=29.24 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 81 ~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
..-+.+..++..+|++..|.|...++..+++.+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ 1447 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLD 1447 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcC
Confidence 3457788899999999999999999999999864
No 259
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=36.50 E-value=1.1e+02 Score=19.35 Aligned_cols=33 Identities=6% Similarity=0.153 Sum_probs=17.4
Q ss_pred CCcccHHHHHHHHHHhCCCCCH-HHHHHHHHhhC
Q psy12851 98 QGYICADELRHVMTTLGERLSE-DEVNEMIQEAD 130 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~-~~~~~~~~~~d 130 (148)
...|+..++..+++..|....+ ..++..|....
T Consensus 113 ~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~ 146 (172)
T cd04790 113 QRLVTKEKWVAILKAAGMDEADMRRWHIEFEKME 146 (172)
T ss_pred cccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhC
Confidence 4456677777777666633332 33444444443
No 260
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=36.42 E-value=1.1e+02 Score=19.76 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.4
Q ss_pred CCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchH
Q psy12851 22 RQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFP 67 (148)
Q Consensus 22 ~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 67 (148)
.+.+|.+..+++...++.-+...+.+.+..+... |..++..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~---d~K~Rf~l~ 70 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVES---DDKGRFEIS 70 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHc---CCCcceEec
Confidence 3678999999999988765566888888877654 444555554
No 261
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=36.09 E-value=65 Score=16.51 Aligned_cols=56 Identities=9% Similarity=0.109 Sum_probs=26.8
Q ss_pred cccHHHHHH-HHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHH
Q psy12851 4 QLTEEQIND-FKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLT 71 (148)
Q Consensus 4 ~l~~~~~~~-l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 71 (148)
.||..+... +..++..++.+....-...-... ++..=+..+..++...|++++...
T Consensus 2 ~L~~~ERl~Lve~LwdSL~~~~~~~~~~~~~~~------------el~~R~~~~~~g~~~~i~~eev~~ 58 (63)
T TIGR02574 2 ALSPDERIQLVEDIWDSIAAEAKHLILTEAQKA------------ELDRRLADYKADPSKASPWEEVRA 58 (63)
T ss_pred CCCHHHHHHHHHHHHHHhccCcccCCCCHHHHH------------HHHHHHHHHHcCCcCCCCHHHHHH
Confidence 355555444 46677777654333222222221 223344444455555666666544
No 262
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=35.46 E-value=34 Score=21.96 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHH
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLI 53 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~ 53 (148)
..+++.|..||+..--.++.+++..++..-+.-.....|..+.
T Consensus 49 ~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 49 EAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 4578889999988877889999999887766666666665444
No 263
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=35.05 E-value=47 Score=14.58 Aligned_cols=18 Identities=22% Similarity=0.456 Sum_probs=12.9
Q ss_pred CcCHHHHHHHHHHcCCCC
Q psy12851 27 RIPIHELGTVMRFLGLTP 44 (148)
Q Consensus 27 ~i~~~e~~~~l~~~~~~~ 44 (148)
.++..+++..++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 467788888888776643
No 264
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=34.72 E-value=82 Score=17.22 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHH
Q psy12851 105 ELRHVMTTLGERLSEDEVNEMIQ 127 (148)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~~~~ 127 (148)
|+..+|+.+|.++++++..-+-.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 45567888999999988665543
No 265
>KOG4718|consensus
Probab=34.60 E-value=1.4e+02 Score=19.90 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCccccHHHHHHHHHHHHHhcCC-CCCCcCHHHHHHH-HHHcCCCCCHHHHHHHHHHh
Q psy12851 1 MADQLTEEQINDFKEAFSFFNRQ-GDGRIPIHELGTV-MRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~-~~g~i~~~e~~~~-l~~~~~~~~~~~~~~~~~~~ 56 (148)
|++.+++.+++-++.+..++-.. .++.-+..-+... +..-+.++..+++..++..+
T Consensus 89 maT~f~~nEielfrkalE~im~sed~~~asst~~~~~vlq~k~k~L~ks~iE~lLqkf 146 (235)
T KOG4718|consen 89 MATGFTANEIELFRKALEKIMSSEDCHIASSTAYNDIVLQAKSKPLKKSRIEELLQKF 146 (235)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhhhHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 57788999999998888777443 3333332223222 23335677888887777665
No 266
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=34.36 E-value=96 Score=17.90 Aligned_cols=33 Identities=12% Similarity=0.090 Sum_probs=26.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.-.||.+++..++...|..+.+..+..+.+.+.
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~ 47 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALE 47 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 346999999999999998888877777777664
No 267
>KOG0039|consensus
Probab=34.33 E-value=1.5e+02 Score=23.39 Aligned_cols=26 Identities=19% Similarity=0.448 Sum_probs=14.4
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHH
Q psy12851 86 IKQAFQVFDKHKQGYICADELRHVMT 111 (148)
Q Consensus 86 ~~~~f~~~d~~~~g~I~~~e~~~~l~ 111 (148)
...++...|.+..|.+..+++..++.
T Consensus 63 ~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 63 AALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred HHHhhhhccccccceeeecchhHHHH
Confidence 34455555565556666555555554
No 268
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=33.87 E-value=73 Score=16.39 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHH
Q psy12851 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLSEDEVNEMI 126 (148)
Q Consensus 83 ~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~-~~~~~~~~~~~~ 126 (148)
.++...++..+- +|.++..++-.+|..+. ...+.+++.-+.
T Consensus 17 ~~e~~~~~~~i~---~g~~s~~qiaAfL~al~~kget~~Eiag~~ 58 (66)
T PF02885_consen 17 REEAKAAFDAIL---DGEVSDAQIAAFLMALRMKGETPEEIAGFA 58 (66)
T ss_dssp HHHHHHHHHHHH---TTSS-HHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 344444554443 23445555444443331 124444444433
No 269
>PRK08181 transposase; Validated
Probab=33.64 E-value=1.1e+02 Score=21.04 Aligned_cols=45 Identities=11% Similarity=0.076 Sum_probs=20.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 99 GYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 99 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
.+|+.+.+...|+.+..+--.+.+....... ..+.++|.+|+..|
T Consensus 5 ~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a---~~~~~~~~e~L~~l 49 (269)
T PRK08181 5 NVIDEARLGLLLNELRLPTIKTLWPQFAEQA---DKEGWPAARFLAAI 49 (269)
T ss_pred CcccHHHHHHHHHHcCchHHHHHHHHHHHHH---hhcCCCHHHHHHHH
Confidence 4455556666666655332222233332221 23345666665544
No 270
>KOG0843|consensus
Probab=33.44 E-value=1.4e+02 Score=19.41 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.3
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
+.++.+++.+|+..|. ++.|+.-.|=.++.+.| .+++..+.-+|..-
T Consensus 107 T~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L--~LsetQVkvWFQNR 153 (197)
T KOG0843|consen 107 TAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSL--SLSETQVKVWFQNR 153 (197)
T ss_pred cccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHc--CCChhHhhhhhhhh
Confidence 3578899999999994 55777777777766664 46666676666543
No 271
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=32.25 E-value=1.9e+02 Score=20.79 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=23.8
Q ss_pred cCCCCCCcCHHHHHHHHHHcCCCCCH----------HHHHHHHHHhCc
Q psy12851 21 NRQGDGRIPIHELGTVMRFLGLTPTE----------AELLDLIREIDV 58 (148)
Q Consensus 21 d~~~~g~i~~~e~~~~l~~~~~~~~~----------~~~~~~~~~~~~ 58 (148)
+.++.+.++..+-..++..++++... .++..++.....
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~~ 182 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELDK 182 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHHH
Confidence 34445678888888888887664322 455566555543
No 272
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.94 E-value=64 Score=18.76 Aligned_cols=40 Identities=18% Similarity=0.465 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCCHHH---H--HHHHHhhCcCCCCcccHHHHHHHhc
Q psy12851 105 ELRHVMTTLGERLSEDE---V--NEMIQEADINGDGRINYEDFVTLMT 147 (148)
Q Consensus 105 e~~~~l~~~~~~~~~~~---~--~~~~~~~d~~~~g~i~~~ef~~~l~ 147 (148)
.|-.+++++|..+..+. + ..++..+ ..|.|+-+|-+++|+
T Consensus 77 kld~vlramgy~p~~e~~~~i~~~~i~~ql---e~Gei~peeA~~~L~ 121 (122)
T COG3877 77 KLDEVLRAMGYNPDSENSVNIGKKKIIDQL---EKGEISPEEAIKMLN 121 (122)
T ss_pred HHHHHHHHcCCCCCCCChhhhhHHHHHHHH---HcCCCCHHHHHHHhc
Confidence 45556666664432211 1 2234333 366777777776664
No 273
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=31.68 E-value=53 Score=14.13 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=9.7
Q ss_pred CCCcCHHHHHHHHH
Q psy12851 25 DGRIPIHELGTVMR 38 (148)
Q Consensus 25 ~g~i~~~e~~~~l~ 38 (148)
.|.||.+||...-.
T Consensus 14 ~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 14 KGEISEEEYEQKKA 27 (31)
T ss_pred cCCCCHHHHHHHHH
Confidence 47788888876543
No 274
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=31.59 E-value=99 Score=17.20 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=19.7
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMIQE 128 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 128 (148)
|+.++++.+.+-....++++++..+...
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 6777788877777777787776555443
No 275
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.17 E-value=1.6e+02 Score=19.40 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=9.1
Q ss_pred CCCCcCHHHHHHHHH
Q psy12851 24 GDGRIPIHELGTVMR 38 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~ 38 (148)
=+|.||.++....+-
T Consensus 10 FDGTITl~Ds~~~it 24 (220)
T COG4359 10 FDGTITLNDSNDYIT 24 (220)
T ss_pred CCCceEecchhHHHH
Confidence 356677777666553
No 276
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=30.16 E-value=94 Score=16.51 Aligned_cols=32 Identities=13% Similarity=0.252 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 99 GYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 99 g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
..-+.+|+...|...|+.++...+..-++.+.
T Consensus 18 ~i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 18 EISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp ---SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 35688999999999999999998888888764
No 277
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=30.08 E-value=1.2e+02 Score=17.85 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHH
Q psy12851 17 FSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLT 71 (148)
Q Consensus 17 f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~ 71 (148)
|...-..++..+|..++..+|...|.......+..+.+.+.. .+..+.+.
T Consensus 7 yll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 7 YLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 333334566679999999999999988888888888887742 56666664
No 278
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=29.70 E-value=1.2e+02 Score=17.60 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=27.3
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 100 YICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.||.+.+..++...|..+.+..+..+...+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999998888888888888774
No 279
>KOG0871|consensus
Probab=29.60 E-value=1.5e+02 Score=18.53 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=21.6
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHhCCC
Q psy12851 90 FQVFDKHKQGYICADELRHVMTTLGER 116 (148)
Q Consensus 90 f~~~d~~~~g~I~~~e~~~~l~~~~~~ 116 (148)
=..++.+...+|..+.+...|+.+|+.
T Consensus 56 neic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 56 NEICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHHHhHHhcccCCHHHHHHHHHHcchH
Confidence 355666677889999999999999865
No 280
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=29.06 E-value=90 Score=15.97 Aligned_cols=25 Identities=8% Similarity=0.171 Sum_probs=20.6
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHH
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEM 125 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~ 125 (148)
.+.+++..+.+..|+.++.+++...
T Consensus 25 ~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3477888888999999999888764
No 281
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=28.56 E-value=38 Score=16.71 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=12.3
Q ss_pred HHHhhcCCCCCcccHHHHHHHHH
Q psy12851 89 AFQVFDKHKQGYICADELRHVMT 111 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~ 111 (148)
+|+.+...|++.+|.+|+..-+.
T Consensus 11 I~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHHTTS-BEHHHHHHTST
T ss_pred cHHHHHHcCCCCCCHHHHHHHcC
Confidence 44555444456677666665544
No 282
>KOG4301|consensus
Probab=28.27 E-value=1.2e+02 Score=21.81 Aligned_cols=53 Identities=13% Similarity=0.062 Sum_probs=24.4
Q ss_pred HhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHH
Q psy12851 91 QVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVT 144 (148)
Q Consensus 91 ~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 144 (148)
-.+|+.+.|.++..-.+-.+..+...---+.+..++.... |.+|-+.+-.|..
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~ 169 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQ 169 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHH
Confidence 4446666666665555555544432222233444444333 4455444444433
No 283
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=28.04 E-value=61 Score=14.04 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=5.3
Q ss_pred ccHHHHHHHHH
Q psy12851 101 ICADELRHVMT 111 (148)
Q Consensus 101 I~~~e~~~~l~ 111 (148)
|+.++++.++.
T Consensus 17 ls~eeir~FL~ 27 (30)
T PF08671_consen 17 LSKEEIREFLE 27 (30)
T ss_dssp --HHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 56666666554
No 284
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.02 E-value=77 Score=17.37 Aligned_cols=32 Identities=9% Similarity=0.386 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q psy12851 114 GERLSEDEVNEMIQEADINGDGRINYEDFVTL 145 (148)
Q Consensus 114 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (148)
|..++++..+.+-+.++......|+++|++.+
T Consensus 43 gG~IP~~V~~sl~kL~~La~~N~v~feeLc~Y 74 (82)
T PF11020_consen 43 GGQIPEKVMDSLSKLYKLAKENNVSFEELCVY 74 (82)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44556666666666665555556777777654
No 285
>COG4465 CodY Pleiotropic transcriptional repressor [Transcription]
Probab=27.67 E-value=2e+02 Score=19.41 Aligned_cols=48 Identities=10% Similarity=0.311 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCc
Q psy12851 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDV 58 (148)
Q Consensus 5 l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 58 (148)
||..+++.+..+|..+|. +.|.+.+.-+++- ...+++.|-..++.+.+
T Consensus 183 LSYSEleAve~I~eELdG-~EG~lvASkiADr-----vGITRSVIVNALRKlES 230 (261)
T COG4465 183 LSYSELEAVEHIFEELDG-NEGLLVASKIADR-----VGITRSVIVNALRKLES 230 (261)
T ss_pred ccHHHHHHHHHHHHhcCC-ccceeeehhhhhh-----hCchHHHHHHHHHHhhh
Confidence 788888889999999875 5677776666542 35667777666666644
No 286
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=27.58 E-value=1.2e+02 Score=17.05 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.0
Q ss_pred CCCCcccH
Q psy12851 132 NGDGRINY 139 (148)
Q Consensus 132 ~~~g~i~~ 139 (148)
.+.+.|+.
T Consensus 69 ~~~~~Ip~ 76 (90)
T PF02337_consen 69 QGPEKIPI 76 (90)
T ss_dssp CSTTTS-C
T ss_pred hCCCCCCh
Confidence 44444443
No 287
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=27.34 E-value=64 Score=15.11 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=10.6
Q ss_pred ccHHHHHHHHHHHHH
Q psy12851 5 LTEEQINDFKEAFSF 19 (148)
Q Consensus 5 l~~~~~~~l~~~f~~ 19 (148)
+..++...++.+|+.
T Consensus 2 Ik~eER~aLEAMFNL 16 (41)
T PF12426_consen 2 IKTEERSALEAMFNL 16 (41)
T ss_pred cchhHHHHHHHHhce
Confidence 356777888888863
No 288
>PF04814 HNF-1_N: Hepatocyte nuclear factor 1 (HNF-1), N terminus; InterPro: IPR006899 This domain consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerisation sequence [] and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3) [].; GO: 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2GYP_B 1IC8_B 2H8R_B 1G2Y_D 1F93_H 1G39_D 1G2Z_B 1JB6_B.
Probab=27.31 E-value=52 Score=21.16 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC
Q psy12851 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG 41 (148)
Q Consensus 1 ~~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~ 41 (148)
|.++|+.+++.-|+++. .+| +|.+++..+|..+.
T Consensus 1 Mvs~l~~~QieLLqrL~------~SG-~TK~~ii~ALe~l~ 34 (180)
T PF04814_consen 1 MVSKLTIEQIELLQRLR------RSG-MTKEEIIHALETLD 34 (180)
T ss_dssp --HHHHHHHHHHHHHHH------HCT---HHHHHHHHTT--
T ss_pred CCccccHHHHHHHHHHH------HcC-CCHHHHHHHHhccC
Confidence 56778888888777765 334 88888888887665
No 289
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=27.29 E-value=31 Score=17.90 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=23.2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHH
Q psy12851 89 AFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYE 140 (148)
Q Consensus 89 ~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ 140 (148)
+=..||++..|.| .+.....+.+.+..+.=.+|.|+|.
T Consensus 25 ~p~VFd~~~~~~v--------------~~d~a~~~~v~~~v~~CPSGAL~~~ 62 (64)
T PF06902_consen 25 APEVFDQDDEPWV--------------SPDEASAEEVREAVDRCPSGALSYW 62 (64)
T ss_pred CCCcccCCCCCcC--------------CcCccCHHHHHHHHHcCCccCcEEe
Confidence 3355677667777 2444455666666666677777653
No 290
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=27.28 E-value=1.4e+02 Score=17.47 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 100 YICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.||.+.+..++...|..+.+..+..+...+.
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~ 46 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALE 46 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 7999999999999998888888888888775
No 291
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=27.02 E-value=71 Score=14.13 Aligned_cols=20 Identities=15% Similarity=0.439 Sum_probs=11.0
Q ss_pred HHHhCCCCCHHHHHHHHHhhCc
Q psy12851 110 MTTLGERLSEDEVNEMIQEADI 131 (148)
Q Consensus 110 l~~~~~~~~~~~~~~~~~~~d~ 131 (148)
+..+| ++.+....++...+.
T Consensus 9 L~~mG--f~~~~~~~AL~~~~~ 28 (37)
T PF00627_consen 9 LMEMG--FSREQAREALRACNG 28 (37)
T ss_dssp HHHHT--S-HHHHHHHHHHTTT
T ss_pred HHHcC--CCHHHHHHHHHHcCC
Confidence 33446 666666766665543
No 292
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=26.51 E-value=1.7e+02 Score=18.27 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=27.0
Q ss_pred cCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCC--CcccHHHHHHHHHHh
Q psy12851 58 VNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQ--GYICADELRHVMTTL 113 (148)
Q Consensus 58 ~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~--g~I~~~e~~~~l~~~ 113 (148)
.|.+|.++|+.+...=..... .....+..-|+.+...++ ..++.+|+-+.++++
T Consensus 63 gD~NGnidye~ls~~eqee~k--~~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eAL 118 (162)
T PF12207_consen 63 GDKNGNIDYEKLSKEEQEEYK--KLTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEAL 118 (162)
T ss_dssp B-TTS-B-GGGS-HHHHHHHH--HHHHHHHHHHHHHTT---HHHHS-HHHHHHHHHHH
T ss_pred cccCCCcCHHhCCHHHHHHHH--HHHHhcchHHHHhcCCcchhhhcCHHHHHHHHHHH
Confidence 466788888876543322110 112346666777765433 457888888877664
No 293
>KOG1264|consensus
Probab=26.35 E-value=3.8e+02 Score=22.33 Aligned_cols=87 Identities=11% Similarity=0.176 Sum_probs=45.4
Q ss_pred CCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh-----CcCCC
Q psy12851 60 QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA-----DINGD 134 (148)
Q Consensus 60 ~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~-----d~~~~ 134 (148)
....|+..++...+............++.-|-- |.-+++-++.++|..+.+.+-..-.-..+......+ +.-..
T Consensus 157 ~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~ 235 (1267)
T KOG1264|consen 157 RENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDA 235 (1267)
T ss_pred hhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccc
Confidence 344577777777665432222222223233322 233567799999999988764322212222221111 11122
Q ss_pred CcccHHHHHHHhc
Q psy12851 135 GRINYEDFVTLMT 147 (148)
Q Consensus 135 g~i~~~ef~~~l~ 147 (148)
..|++.+|.++|-
T Consensus 236 ~vV~~~ef~rFL~ 248 (1267)
T KOG1264|consen 236 SVVYLQEFQRFLI 248 (1267)
T ss_pred eEeeHHHHHHHHH
Confidence 4689999988763
No 294
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=26.32 E-value=1.2e+02 Score=16.30 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=30.0
Q ss_pred ccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCccc--HHHHHHHHHHhCCCCCHHH
Q psy12851 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYIC--ADELRHVMTTLGERLSEDE 121 (148)
Q Consensus 63 ~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~--~~e~~~~l~~~~~~~~~~~ 121 (148)
..+|++|...+.....++........-+..+-. +++.|. ...|..++...+..++++.
T Consensus 26 ~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~~esv~~y~~rf~~l~~~~~~~~~e~~ 85 (96)
T PF03732_consen 26 FITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-GNESVREYVNRFRELARRAPPPMDEEM 85 (96)
T ss_pred CCCHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcHHHHHHHHHHHHHHCCCCcCHHH
Confidence 458888888777665554444445554555554 343332 1244444444443344433
No 295
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=26.09 E-value=90 Score=14.96 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=18.9
Q ss_pred CCccc-HHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 98 QGYIC-ADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 98 ~g~I~-~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
.|.|+ ..++..-|...|.-++++.++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 45665 333444445567777777777776643
No 296
>PF02758 PYRIN: PAAD/DAPIN/Pyrin domain; InterPro: IPR004020 Pyrin domain was identified as putative protein-protein interaction domain at the N-terminal region of several proteins thought to function in apoptotic and inflammatory signalling pathways. Using secondary structure prediction and potential-based fold recognition methods, the PYRIN domain is predicted to be a member of the six-helix bundle death domain-fold superfamily that includes death domains (DDs), death effector domains (DEDs), and caspase recruitment domains (CARDs). Members of the death domain-fold superfamily are well established mediators of protein-protein interactions found in many proteins involved in apoptosis and inflammation, indicating further that the PYRIN domains serve a similar function. Comparison of a circular dichroism spectrum of the PYRIN domain of CARD7/DEFCAP/NAC/NALP1 with spectra of several proteins known to adopt the death domain-fold provides experimental support for the structure prediction [] It is found in interferon-inducible proteins, pyrin and myeloid cell nuclear differentiation antigen.; PDB: 2DO9_A 2YU0_A 2KN6_A 1UCP_A 2L6A_A 2KM6_A 1PN5_A 2DBG_A 3QF2_B 2HM2_Q.
Probab=26.08 E-value=98 Score=16.82 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=20.9
Q ss_pred ccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHH
Q psy12851 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGT 35 (148)
Q Consensus 3 ~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~ 35 (148)
++|++++.+.++.........+...|+..++..
T Consensus 10 e~L~~~efk~FK~~L~~~~~~~~~~Ip~~~le~ 42 (83)
T PF02758_consen 10 EELSEEEFKRFKWLLKEPVKEGFPPIPRGELEK 42 (83)
T ss_dssp HTS-HHHHHHHHHHHHSTSSTTTCSSSHCHHHH
T ss_pred HhCCHHHHHHHHHHhcchhhcCCCCCCHHHHhh
Confidence 356778888877777644455666677666544
No 297
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=25.99 E-value=2.1e+02 Score=19.49 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=46.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHHH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMA 74 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~~ 74 (148)
.|++.+.+.+.+-|...=.+..|.+-..|..-++..-....+..++.---..+. ...|-|.+|+..+.
T Consensus 13 ~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 80 (257)
T PRK14074 13 GLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDIK---ESLIAYSDFLEDLT 80 (257)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHHH---HHHHHHHHHHHHHH
Confidence 489999999999998887888888988998887765545566655432222221 23466777766543
No 298
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=25.71 E-value=86 Score=20.63 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=19.0
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHH
Q psy12851 17 FSFFNRQGDGRIPIHELGTVMRF 39 (148)
Q Consensus 17 f~~~d~~~~g~i~~~e~~~~l~~ 39 (148)
...+|.+++|.++.+++..+...
T Consensus 56 l~~~D~~~dg~~~~~el~~l~~~ 78 (212)
T PF06226_consen 56 LEGLDKDGDGKLDPEELAALAKE 78 (212)
T ss_pred HHhhhhcccCCCCHHHHHHHHHH
Confidence 34678999999999999887654
No 299
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=25.66 E-value=1.2e+02 Score=16.06 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q psy12851 85 EIKQAFQVFDKHKQGYICADELRHVMTTL----GERLSEDEVNEMIQEA 129 (148)
Q Consensus 85 ~~~~~f~~~d~~~~g~I~~~e~~~~l~~~----~~~~~~~~~~~~~~~~ 129 (148)
.+..+...++....--+-..+++.++..+ |...+++.++.+|..|
T Consensus 24 ~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 24 HLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 45555555554333345556666666553 5666777777777654
No 300
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=25.65 E-value=1.3e+02 Score=17.54 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=6.4
Q ss_pred CCCcCHHHHHHHH
Q psy12851 25 DGRIPIHELGTVM 37 (148)
Q Consensus 25 ~g~i~~~e~~~~l 37 (148)
+..|+..|+...+
T Consensus 10 ~eiIt~sel~~~~ 22 (118)
T PF09312_consen 10 DEIITQSELEQRL 22 (118)
T ss_dssp SSEEEHHHHHHHH
T ss_pred CcCcCHHHHHHHH
Confidence 3345555555543
No 301
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=25.63 E-value=1.5e+02 Score=17.49 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=11.4
Q ss_pred HHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 122 VNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 122 ~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
...++..+. +|.||.++=.+.|
T Consensus 91 ~~~IL~~L~---~GeIs~eeA~~~L 112 (113)
T PF09862_consen 91 RKEILDKLE---KGEISVEEALEIL 112 (113)
T ss_pred HHHHHHHHH---cCCCCHHHHHHHh
Confidence 344444443 5666666655554
No 302
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.63 E-value=2.3e+02 Score=20.39 Aligned_cols=90 Identities=12% Similarity=0.099 Sum_probs=47.7
Q ss_pred HHHcCCCCCHHHHHHHHHHhCcC--CCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 37 MRFLGLTPTEAELLDLIREIDVN--QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
+..+...+..+++..++..+..| ....+-=++|...+... .+.....-+..+-+++...=+|.+-..|+.+=++.-
T Consensus 31 m~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l-~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~- 108 (351)
T CHL00185 31 MANYDISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNL-DEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDK- 108 (351)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhhchhhC-CHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccC-
Confidence 34467777888888888777444 33455555665544321 111111223333455555667777777776655422
Q ss_pred CCCCHHHHHHHHHhhCcC
Q psy12851 115 ERLSEDEVNEMIQEADIN 132 (148)
Q Consensus 115 ~~~~~~~~~~~~~~~d~~ 132 (148)
...+..++..+..|
T Consensus 109 ----nP~lae~F~lMaRD 122 (351)
T CHL00185 109 ----NPLLAEGFLLMSRD 122 (351)
T ss_pred ----CcHHHHHHHHHhhh
Confidence 13455555555444
No 303
>PF08355 EF_assoc_1: EF hand associated; InterPro: IPR013566 This region typically appears on the C terminus of EF hands in GTP-binding proteins such as Arht/Rhot (may be involved in mitochondrial homeostasis and apoptosis[]). The EF hand associated region is found in yeast, vertebrates and plants.
Probab=25.31 E-value=64 Score=17.48 Aligned_cols=18 Identities=22% Similarity=0.339 Sum_probs=13.3
Q ss_pred hCcCCCCcccHHHHHHHh
Q psy12851 129 ADINGDGRINYEDFVTLM 146 (148)
Q Consensus 129 ~d~~~~g~i~~~ef~~~l 146 (148)
...+..|.||++.|+..+
T Consensus 11 ~~~n~~G~iTl~gfLa~W 28 (76)
T PF08355_consen 11 VVTNEKGWITLQGFLAQW 28 (76)
T ss_pred eEEcCCCcCcHHHHHHHH
Confidence 445788888888887653
No 304
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=25.28 E-value=2.3e+02 Score=20.46 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=48.0
Q ss_pred HHHcCCCCCHHHHHHHHHHhCcC--CCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 37 MRFLGLTPTEAELLDLIREIDVN--QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
+..+......+++..++..+..| ....+-=++|...+... .+.....-+..+-+++...=+|.+-..|+.+=++.-
T Consensus 35 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l-~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~- 112 (355)
T PRK13654 35 MAKLDLSPNREELDAILEEMRADYNRHHFVRDEEFDQDWDHL-DPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDR- 112 (355)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCcccccccCChhhhhchhhC-CHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhcccc-
Confidence 34567778888888888777444 33445555665544321 111111223333455555667777777776655422
Q ss_pred CCCCHHHHHHHHHhhCcC
Q psy12851 115 ERLSEDEVNEMIQEADIN 132 (148)
Q Consensus 115 ~~~~~~~~~~~~~~~d~~ 132 (148)
...+..++..+..|
T Consensus 113 ----nP~lae~F~lMaRD 126 (355)
T PRK13654 113 ----NPLLAELFQLMARD 126 (355)
T ss_pred ----CcHHHHHHHHHhhh
Confidence 23455555555444
No 305
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=25.23 E-value=1.6e+02 Score=20.95 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=44.5
Q ss_pred HHHcCCCCCHHHHHHHHHHhCcCC--CCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhC
Q psy12851 37 MRFLGLTPTEAELLDLIREIDVNQ--RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG 114 (148)
Q Consensus 37 l~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~ 114 (148)
+..+...+..+++..++..+..|. ...+-=++|...... +.+.....-+..+-+++...=+|.+-..|+.+=++.
T Consensus 25 m~~~d~s~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~-l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~-- 101 (337)
T TIGR02029 25 MANLDVSPVENEWDAMLAEMKADYNRHHFVRNEEFDQSWEH-IDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKN-- 101 (337)
T ss_pred HHhcCCchhHHHHHHHHHHHHhCccccccccChhhhcchhh-CCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCC--
Confidence 344567777777777777764433 344444555443332 111111122233334555555677766666554432
Q ss_pred CCCCHHHHHHHHHhhCcC
Q psy12851 115 ERLSEDEVNEMIQEADIN 132 (148)
Q Consensus 115 ~~~~~~~~~~~~~~~d~~ 132 (148)
.+..+..++..+..|
T Consensus 102 ---~~P~lae~F~~MaRD 116 (337)
T TIGR02029 102 ---RDPVVAELFQLMARD 116 (337)
T ss_pred ---CChHHHHHHHHHhhh
Confidence 223455555555444
No 306
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=24.97 E-value=1.3e+02 Score=18.22 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=9.2
Q ss_pred HHHHhCCCCCHHHHHHHHHh
Q psy12851 109 VMTTLGERLSEDEVNEMIQE 128 (148)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~~~ 128 (148)
.-+..|..+++++++..+..
T Consensus 92 ~A~~~gi~vsd~ev~~~i~~ 111 (154)
T PF13624_consen 92 EAKKLGISVSDAEVDDAIKQ 111 (154)
T ss_dssp HHHHTT----HHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH
Confidence 33445666666666666655
No 307
>PRK04158 transcriptional repressor CodY; Validated
Probab=24.61 E-value=1.1e+02 Score=21.08 Aligned_cols=49 Identities=10% Similarity=0.311 Sum_probs=32.5
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHhCc
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDV 58 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~ 58 (148)
.||..+++.++.+|..+|- ..|.+.+..+++ ....+++.|-..++.+.+
T Consensus 179 tLSySEleAv~hIf~eL~g-~EG~lvASkiAD-----rvgITRSVIVNALRK~ES 227 (256)
T PRK04158 179 TLSYSELEAVEHIFEELDG-NEGLLVASKIAD-----RVGITRSVIVNALRKLES 227 (256)
T ss_pred hcCHhHHHHHHHHHHhcCC-CcceEEeeeccc-----ccCCchhhhhhhhhhhhc
Confidence 4677888888888888864 456666555543 245666666666666644
No 308
>KOG4403|consensus
Probab=24.56 E-value=3.1e+02 Score=20.66 Aligned_cols=59 Identities=8% Similarity=0.178 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHH-cCCCCCHHHHHHHHHHhCcCCCCccchHHHHHHH
Q psy12851 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRF-LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73 (148)
Q Consensus 11 ~~l~~~f~~~d~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ef~~~~ 73 (148)
+.++.+-..+|.|.+|.|+.+|=-.+++. +.+.-+...=..-| +..+..|+.++.-..+
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f----H~dD~~ItVedLWeaW 127 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKF----HGDDKHITVEDLWEAW 127 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhc----cCCccceeHHHHHHHH
Confidence 44666778899999999999988887766 33322222111122 2245667766654433
No 309
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=24.24 E-value=1.3e+02 Score=16.27 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCcC-CCCcccHHHHHHHh
Q psy12851 103 ADELRHVMTTLGERLSEDEVNEMIQEADIN-GDGRINYEDFVTLM 146 (148)
Q Consensus 103 ~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~l 146 (148)
..++...| .|.+.+.+.+...+..++.. --|.++.++++++|
T Consensus 44 i~~le~~L--~G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL--IGCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH--TTCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH--HhcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 45555555 36667777888888777543 34567777777654
No 310
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=23.81 E-value=1e+02 Score=14.75 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIRE 55 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~ 55 (148)
.++++++..|+..|..- -+.+..+...+...+| ++...|...|..
T Consensus 6 ~~~~~~~~~L~~~f~~~-----~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQKN-----PYPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 47888888998888653 2678888888777764 557777777654
No 311
>PF13592 HTH_33: Winged helix-turn helix
Probab=23.62 E-value=1.1e+02 Score=15.30 Aligned_cols=32 Identities=16% Similarity=0.432 Sum_probs=23.5
Q ss_pred CCcCHHHHHHHHHH-cCCCCCHHHHHHHHHHhC
Q psy12851 26 GRIPIHELGTVMRF-LGLTPTEAELLDLIREID 57 (148)
Q Consensus 26 g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~~~ 57 (148)
+..+..++...+.. +|...+.+-+..++..++
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 45677888886644 788888888888877664
No 312
>PHA02771 hypothetical protein; Provisional
Probab=23.62 E-value=1.5e+02 Score=16.69 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.1
Q ss_pred CHHHHHHHHH
Q psy12851 118 SEDEVNEMIQ 127 (148)
Q Consensus 118 ~~~~~~~~~~ 127 (148)
+..+...+++
T Consensus 33 te~ey~ELi~ 42 (90)
T PHA02771 33 SYNQFEEIIK 42 (90)
T ss_pred cHHHHHHHHc
Confidence 3444444443
No 313
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=23.58 E-value=1.4e+02 Score=16.32 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=14.1
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12851 101 ICADELRHVMTTLGERLSEDEVNEMI 126 (148)
Q Consensus 101 I~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (148)
|+..+.+.+.+.+| +++.+++.+-
T Consensus 9 v~~~~wk~~~R~LG--lse~~Id~ie 32 (80)
T cd08313 9 VPPRRWKEFVRRLG--LSDNEIERVE 32 (80)
T ss_pred CCHHHHHHHHHHcC--CCHHHHHHHH
Confidence 55666666666666 5555555443
No 314
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=23.44 E-value=80 Score=16.15 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=10.2
Q ss_pred HHHhhCcCCCCcccHHHHH
Q psy12851 125 MIQEADINGDGRINYEDFV 143 (148)
Q Consensus 125 ~~~~~d~~~~g~i~~~ef~ 143 (148)
+...++.+++|.|+...+.
T Consensus 20 L~~~~~~~~~g~Vpi~~i~ 38 (61)
T PF05383_consen 20 LRSQMDSNPDGWVPISTIL 38 (61)
T ss_dssp HHHHHCTTTTTBEEHHHHT
T ss_pred HHHHHHhcCCCcEeHHHHH
Confidence 3444555556666655443
No 315
>PF05256 UPF0223: Uncharacterised protein family (UPF0223); InterPro: IPR007920 This family of proteins is functionally uncharacterised.; PDB: 2OY9_B.
Probab=23.28 E-value=1.2e+02 Score=17.02 Aligned_cols=52 Identities=23% Similarity=0.295 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC-CCCCHHHHHHHHHHhC
Q psy12851 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG-LTPTEAELLDLIREID 57 (148)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~ 57 (148)
|.+++..+...|+....--.+.|+..+|....+.+. .-++..+=.++.+.+.
T Consensus 12 steEii~Vi~F~~~VE~AYE~gV~r~~ll~~Y~~FK~VVpsK~EEKql~r~Fe 64 (88)
T PF05256_consen 12 STEEIIDVINFFNAVEKAYEKGVDREELLDAYRRFKKVVPSKSEEKQLDREFE 64 (88)
T ss_dssp -HHHHHHHHHHHHHHHHHHTT-EEHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445555555555555433334466666665554432 3455555555555554
No 316
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=23.13 E-value=71 Score=14.39 Aligned_cols=18 Identities=11% Similarity=0.361 Sum_probs=10.1
Q ss_pred cccHHHHHHHHHHhCCCC
Q psy12851 100 YICADELRHVMTTLGERL 117 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~ 117 (148)
.++..+++.+|...|..+
T Consensus 3 sltV~~Lk~iL~~~~I~~ 20 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEF 20 (35)
T ss_dssp T--SHHHHHHHHHHT---
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 356678888888877544
No 317
>PF10982 DUF2789: Protein of unknown function (DUF2789); InterPro: IPR021250 This bacterial family of proteins has no known function. ; PDB: 2KP6_A.
Probab=23.04 E-value=1.4e+02 Score=16.15 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhCcCCC
Q psy12851 105 ELRHVMTTLGERLSEDEVNEMIQEADINGD 134 (148)
Q Consensus 105 e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~ 134 (148)
.+..++..+|..-++..|..++.......+
T Consensus 7 ~l~~LF~QLGL~~~~~~I~~FI~~H~L~~~ 36 (74)
T PF10982_consen 7 TLSNLFAQLGLDSSDEAIEAFIETHQLPAD 36 (74)
T ss_dssp HHHHHHHHHTS---HHHHHHHHHHS---TT
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHhCCCCCC
Confidence 467778888888888888888887664443
No 318
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.02 E-value=1.7e+02 Score=16.95 Aligned_cols=40 Identities=18% Similarity=0.279 Sum_probs=25.7
Q ss_pred HHhhcCCCCCcccHHH----HHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 90 FQVFDKHKQGYICADE----LRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 90 f~~~d~~~~g~I~~~e----~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
-+.....++|.--.++ +...|...|.++++++++.+++..
T Consensus 57 eq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 57 EQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3344333456555543 445566778999999999888754
No 319
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=22.98 E-value=86 Score=19.26 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.8
Q ss_pred CccccHHHHHHHHHHHHHhc
Q psy12851 2 ADQLTEEQINDFKEAFSFFN 21 (148)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d 21 (148)
+..+|+++++.++.-|+..=
T Consensus 8 ~~GFS~~eI~~LR~QF~~~~ 27 (140)
T PF13373_consen 8 SAGFSPEEIQDLRSQFHSIY 27 (140)
T ss_pred HcCCCHHHHHHHHHHHHHHh
Confidence 45689999999999998763
No 320
>PRK10945 gene expression modulator; Provisional
Probab=22.86 E-value=1.4e+02 Score=16.02 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=19.9
Q ss_pred chHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 65 DFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 65 ~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
+-.+|+.-++.. ...+.+..+|.... ..++-.|+..+..+
T Consensus 7 tk~dyL~~fRrc----ss~eTLEkvie~~~----~~L~~~E~~~f~~A 46 (72)
T PRK10945 7 TKTDYLMRLRRC----QTIDTLERVIEKNK----YELSDDELAVFYSA 46 (72)
T ss_pred cHHHHHHHHHhc----CcHHHHHHHHHHhh----ccCCHHHHHHHHHH
Confidence 445555544432 23455555555432 23444666666554
No 321
>KOG0113|consensus
Probab=22.64 E-value=2.8e+02 Score=19.69 Aligned_cols=39 Identities=13% Similarity=0.291 Sum_probs=15.1
Q ss_pred HHhhcCCCCCcccHHHHHHHH-HHhCCCCCHHHHHHHHHh
Q psy12851 90 FQVFDKHKQGYICADELRHVM-TTLGERLSEDEVNEMIQE 128 (148)
Q Consensus 90 f~~~d~~~~g~I~~~e~~~~l-~~~~~~~~~~~~~~~~~~ 128 (148)
...+|++++-.+.-+-+++++ ..+....+++.+...|..
T Consensus 85 l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~ 124 (335)
T KOG0113|consen 85 LKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEK 124 (335)
T ss_pred HHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHh
Confidence 334444444333334444433 223333444444444433
No 322
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=22.61 E-value=20 Score=15.52 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=8.3
Q ss_pred HHHhhCcCCCCcccHH
Q psy12851 125 MIQEADINGDGRINYE 140 (148)
Q Consensus 125 ~~~~~d~~~~g~i~~~ 140 (148)
++..=|.|++-.|+.+
T Consensus 4 LL~qEDTDgn~qITIe 19 (30)
T PF07492_consen 4 LLEQEDTDGNFQITIE 19 (30)
T ss_pred HhhccccCCCcEEEEe
Confidence 4444455555555543
No 323
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=2.3e+02 Score=18.93 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=30.2
Q ss_pred cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCc
Q psy12851 94 DKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADI 131 (148)
Q Consensus 94 d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~ 131 (148)
..|..|+...+++...++..+..++.+.+..+...-++
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 34678999999999999988888888888887765443
No 324
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=22.57 E-value=1.3e+02 Score=16.67 Aligned_cols=17 Identities=18% Similarity=0.401 Sum_probs=11.0
Q ss_pred cccHHHHHHHHHHHHHh
Q psy12851 4 QLTEEQINDFKEAFSFF 20 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~ 20 (148)
.++++|++.+.+.+..-
T Consensus 51 ~lTpDQVrAlHRlvTsS 67 (92)
T PHA02681 51 KMTDDQVRAFHALVTSS 67 (92)
T ss_pred cCCHHHHHHHHHHHhCC
Confidence 46677777766666554
No 325
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=22.55 E-value=1.2e+02 Score=15.07 Aligned_cols=29 Identities=14% Similarity=0.293 Sum_probs=14.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHH
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMI 126 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~ 126 (148)
.|.|+.+||..=+.....--+..++..++
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~ 49 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALF 49 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 45666666655544433233444444443
No 326
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.37 E-value=2.2e+02 Score=18.19 Aligned_cols=42 Identities=12% Similarity=0.261 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTE 46 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~ 46 (148)
+++++--.++-+.|..+- .+++-+...++..++..+..+..-
T Consensus 7 ki~~EiEDEILe~Ya~~~-~~~~D~~l~~Lp~~f~~L~IP~cf 48 (170)
T PF08730_consen 7 KIPPEIEDEILEAYAEYT-EDEQDMTLKDLPNYFEDLQIPKCF 48 (170)
T ss_pred cCChHHHHHHHHHHHHhc-CCccceeHHHHHHHHHHcCCChHH
Confidence 456666777888888873 336679999999999988765443
No 327
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.20 E-value=96 Score=13.92 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=8.7
Q ss_pred cHHHHHHHHHHhCCC
Q psy12851 102 CADELRHVMTTLGER 116 (148)
Q Consensus 102 ~~~e~~~~l~~~~~~ 116 (148)
+.++++..|...|++
T Consensus 5 s~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIP 19 (38)
T ss_pred CHHHHHHHHHHcCCC
Confidence 345666666666543
No 328
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=22.06 E-value=1.7e+02 Score=16.64 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy12851 100 YICADELRHVMTTLGERLSEDEVNEMIQE 128 (148)
Q Consensus 100 ~I~~~e~~~~l~~~~~~~~~~~~~~~~~~ 128 (148)
.|+.+++..+-+-....+++++...+...
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~ 30 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQ 30 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHH
Confidence 46777777777666666777766655544
No 329
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=22.01 E-value=2.1e+02 Score=17.88 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=28.5
Q ss_pred HHHHHHhh-cCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy12851 86 IKQAFQVF-DKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA 129 (148)
Q Consensus 86 ~~~~f~~~-d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (148)
+-.+|..+ +.+.+-..+.+++..-|.+.| +...++..++.-+
T Consensus 5 L~yLfE~y~~~~~~~~~d~~~L~~~L~~aG--F~~~eI~~Al~WL 47 (155)
T PF04361_consen 5 LMYLFENYIDFESDACPDQDDLTRELSAAG--FEDEEINKALDWL 47 (155)
T ss_pred HHHHHHHHcCCccccCCCHHHHHHHHHHcC--CCHHHHHHHHHHH
Confidence 44566665 333456678888888888888 6777777766543
No 330
>cd07357 HN_L-whirlin_R2_like Second harmonin_N_like domain (repeat 2) of the long isoform of whirlin, and related domains. This subgroup contains the second of two harmonin_N_like domains found in the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. The short whirlin isoform, derived from an alternative start ATG, lacks the first harmonin_N_like domain but has in common with the long isoform, this second harmonin_N_like domain (designated repeat 2, included in this subgroup) and PDZ3. This second harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=21.92 E-value=1.2e+02 Score=16.74 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHhhCcCCCCcccHHHHHHH
Q psy12851 117 LSEDEVNEMIQEADINGDGRINYEDFVTL 145 (148)
Q Consensus 117 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (148)
+++.+...+....+.-..|.|+.+.|+..
T Consensus 16 L~e~E~~tm~yyl~eY~~~~~tVealV~a 44 (81)
T cd07357 16 LSENERATLSYYLDEYRSGHISVDALVMA 44 (81)
T ss_pred cCHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34444444444444444555555555443
No 331
>PF10548 P22_AR_C: P22AR C-terminal domain; InterPro: IPR018876 This entry represents the carboxy-terminal domain of the Enterobacteria phage P22 antirepressor ((P03037 from SWISSPROT) []. It is found associated with IPR018875 from INTERPRO.
Probab=21.80 E-value=1.5e+02 Score=15.95 Aligned_cols=42 Identities=24% Similarity=0.175 Sum_probs=27.4
Q ss_pred CccccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcCCCCCH
Q psy12851 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTE 46 (148)
Q Consensus 2 ~~~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~~~~~~ 46 (148)
+.++|+.++..|-=+|..++. +.-...++..+|+.+|.+...
T Consensus 5 t~~fTe~El~~L~Wlw~~~~~---m~~~~~~l~p~L~~lgS~~a~ 46 (74)
T PF10548_consen 5 TFQFTEEELQSLVWLWFAAER---MRELCQELYPALKALGSNYAG 46 (74)
T ss_pred ccccCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCCcCc
Confidence 456788888887777766643 233456777777777765543
No 332
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=21.78 E-value=1.6e+02 Score=16.16 Aligned_cols=33 Identities=15% Similarity=0.317 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Q psy12851 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRF 39 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~ 39 (148)
.++.+++..++.+|..+=.. ..+..+-...+..
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~---~~~~~~a~~~l~~ 59 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRS---GLTLEEALEELEE 59 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTS---SS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 47888999999998877332 1455665554444
No 333
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=21.55 E-value=1.5e+02 Score=18.84 Aligned_cols=29 Identities=10% Similarity=-0.006 Sum_probs=18.1
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 28 IPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 28 i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
||.+||.+.|+..-..+++++.+.+.+.+
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~~e~l~~Y 29 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEEREEILEYY 29 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777666533457777766665544
No 334
>KOG4629|consensus
Probab=21.03 E-value=3.4e+02 Score=21.99 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=34.0
Q ss_pred HHHHHHhCcCCCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q psy12851 50 LDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT 112 (148)
Q Consensus 50 ~~~~~~~~~~~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~ 112 (148)
..+|......+...+..+++..++. .+..+.++..++...++.|+++.|+.....
T Consensus 407 ~~iF~nv~~p~~~~i~ld~~~~f~~--------~E~a~~~~slfe~~~~~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 407 RKIFKNVAKPGVILIDLDDLLRFMG--------DEEAERAFSLFEGASDENITRSSFKEWIVN 461 (714)
T ss_pred HHHHhccCCCCccchhhhhhhhcCC--------HHHHHHHHHhhhhhcccCccHHHHHHHHHH
Confidence 3455555544444555555554443 456777777777655555888888876654
No 335
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=21.00 E-value=3.2e+02 Score=19.47 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=41.6
Q ss_pred HHcCCCCCHHHHHHHHHHhCcC--CCCccchHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCC
Q psy12851 38 RFLGLTPTEAELLDLIREIDVN--QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE 115 (148)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~ 115 (148)
..+......+++..+...+..| ....+-=++|...... ..+.....-+..+-+++...=+|.+-..|+.+=++..
T Consensus 16 ~~~dis~~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~-~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~-- 92 (323)
T cd01047 16 AALDISKNREEFEAMLAEFKADYNRHHFVRNDEFDQAADK-IDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNT-- 92 (323)
T ss_pred HhcCCchhHHHHHHHHHHHHhCcccccccCCchhhhhhhh-CCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccC--
Confidence 3456666667777776666433 3334444455443332 1111111222233344555556666666665544322
Q ss_pred CCCHHHHHHHHHhhCcC
Q psy12851 116 RLSEDEVNEMIQEADIN 132 (148)
Q Consensus 116 ~~~~~~~~~~~~~~d~~ 132 (148)
...+..++..+..|
T Consensus 93 ---nP~lae~F~lMaRD 106 (323)
T cd01047 93 ---NPVVAELFRLMARD 106 (323)
T ss_pred ---CcHHHHHHHHHhhh
Confidence 13344455544443
No 336
>KOG4629|consensus
Probab=20.90 E-value=3.3e+02 Score=22.08 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhCcCCCCcccHHHHHHHh
Q psy12851 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146 (148)
Q Consensus 84 ~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l 146 (148)
...+.+|...-+.+.-.+..+.+..+ +.+++.+.++..++...++.|+++.|.+..
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f-------~~~E~a~~~~slfe~~~~~~Itrs~~~~~i 459 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRF-------MGDEEAERAFSLFEGASDENITRSSFKEWI 459 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhc-------CCHHHHHHHHHhhhhhcccCccHHHHHHHH
Confidence 34566788887777666776666554 467788888888887666669999987653
No 337
>PRK00441 argR arginine repressor; Provisional
Probab=20.54 E-value=2.3e+02 Score=17.60 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=28.5
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy12851 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130 (148)
Q Consensus 98 ~g~I~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (148)
.+..+.+++...|+..|...+...+..-++.+.
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 577899999999999999999998888887764
No 338
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=20.51 E-value=1.7e+02 Score=16.23 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHhCcCCCCccc---hHHHHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCcccHHHHHHHHHHhCCC
Q psy12851 43 TPTEAELLDLIREIDVNQRGTID---FPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGER 116 (148)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~---~~ef~~~~~~~~~~~~~~~~~~~~f~~~d~~~~g~I~~~e~~~~l~~~~~~ 116 (148)
..+.+.|..+.+... -.+|+ |++....+...+ .+.++.+-......+-..|+.+++.-+++..|.+
T Consensus 13 gi~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~~l-----~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 13 GITKPAIRRLARRGG---VKRISGGVYDEVRNVLKSYL-----EDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred cCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 355555555555432 23444 555555444332 2334444444455567789999999999888744
No 339
>COG4476 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.47 E-value=1.7e+02 Score=16.25 Aligned_cols=52 Identities=17% Similarity=0.219 Sum_probs=30.2
Q ss_pred cHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHcC-CCCCHHHHHHHHHHhC
Q psy12851 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG-LTPTEAELLDLIREID 57 (148)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~ 57 (148)
|-+++..+...|+..-.--.+.++..+|....+.+. .-++..+=.++++.+.
T Consensus 12 sTEE~~~Vl~Ffn~VE~aYE~gv~~~~ll~~Yr~FK~IVPsK~eEKql~r~FE 64 (90)
T COG4476 12 STEEMISVLHFFNAVELAYEKGVDAEDLLGSYRRFKEIVPSKAEEKQLGRDFE 64 (90)
T ss_pred cHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcCchHHHHHHhHHHH
Confidence 445666666666665444455677777766555542 3455555566666664
No 340
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=20.33 E-value=2.1e+02 Score=17.01 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=25.9
Q ss_pred CCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 24 GDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 24 ~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
..|.++.+++..-+..-+-.++.+++..++..+
T Consensus 25 ~~~~~tl~~Ia~~i~~~~s~~t~~di~~vl~~~ 57 (124)
T PF14848_consen 25 SSGTLTLEDIAEEIAKEGSTLTRADIEAVLNAL 57 (124)
T ss_pred ecCccCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 468899999988776667788888887777655
No 341
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=20.21 E-value=1.4e+02 Score=18.49 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHhcCCCCC
Q psy12851 6 TEEQINDFKEAFSFFNRQGDG 26 (148)
Q Consensus 6 ~~~~~~~l~~~f~~~d~~~~g 26 (148)
+..++.+++.+|..++.+.++
T Consensus 45 T~~qi~rLe~if~~lg~~~~~ 65 (147)
T cd07909 45 TEGQVERLEQIFESLGEKPEG 65 (147)
T ss_pred HHHHHHHHHHHHHHcCCCCcc
Confidence 568889999999999876554
No 342
>PRK09389 (R)-citramalate synthase; Provisional
Probab=20.16 E-value=3e+02 Score=20.97 Aligned_cols=46 Identities=9% Similarity=0.299 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCc--CCCCccchHHHHHHHHh
Q psy12851 30 IHELGTVMRFLGLTPTEAELLDLIREIDV--NQRGTIDFPEFLTVMAR 75 (148)
Q Consensus 30 ~~e~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~ef~~~~~~ 75 (148)
..-+...+..+|+.++.+++..++..+.. +....++-+|+..++..
T Consensus 320 ~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~ 367 (488)
T PRK09389 320 RAALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAED 367 (488)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 34566667778888888887777766543 33456887787776654
No 343
>PF08485 Polysacc_syn_2C: Polysaccharide biosynthesis protein C-terminal; InterPro: IPR013692 This domain is found to the C terminus of the IPR003869 from INTERPRO domain in bacterial polysaccharide biosynthesis enzymes including the capsule protein CapD [] and several putative epimerases/dehydratases. ; GO: 0003978 UDP-glucose 4-epimerase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=20.12 E-value=1.3e+02 Score=14.71 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=15.9
Q ss_pred HhcCCCCCCcCHHHHHHHHHHc
Q psy12851 19 FFNRQGDGRIPIHELGTVMRFL 40 (148)
Q Consensus 19 ~~d~~~~g~i~~~e~~~~l~~~ 40 (148)
.+...++..++.+++...|..+
T Consensus 23 dYnShNT~rL~ve~~k~lLl~L 44 (48)
T PF08485_consen 23 DYNSHNTERLDVEEMKELLLKL 44 (48)
T ss_pred ccCCCCccccCHHHHHHHHHhC
Confidence 3445677788888888877654
No 344
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=20.09 E-value=3.9e+02 Score=20.33 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHHHhc--------CCCCCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q psy12851 4 QLTEEQINDFKEAFSFFN--------RQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56 (148)
Q Consensus 4 ~l~~~~~~~l~~~f~~~d--------~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 56 (148)
.+++.|.+-+++-|..+. +...-.++.++++++.+-..+..+++|+..+...+
T Consensus 357 ~~~e~~~~~~~~~~s~l~s~~m~~~~~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dL 417 (477)
T PRK12821 357 ELSETQTKGIKKSFSDLQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEF 417 (477)
T ss_pred HHHHHhhhhhhhhhhhhcChhhhhhhccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 345555555666555443 22345688999998877778888998887776554
No 345
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=20.03 E-value=1.2e+02 Score=17.37 Aligned_cols=12 Identities=17% Similarity=0.091 Sum_probs=5.7
Q ss_pred ccHHHHHHHHHH
Q psy12851 101 ICADELRHVMTT 112 (148)
Q Consensus 101 I~~~e~~~~l~~ 112 (148)
++.+++..+|.+
T Consensus 72 ~s~~e~~~~l~~ 83 (105)
T cd03035 72 LDAAKAIALMLE 83 (105)
T ss_pred CCHHHHHHHHHh
Confidence 444555444444
Done!