RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12851
(148 letters)
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 220 bits (562), Expect = 3e-75
Identities = 94/147 (63%), Positives = 117/147 (79%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
A+QLTEEQI +FKEAF+ F++ GDG I ELGTVMR LG PTEAEL D+I E+D +
Sbjct: 1 AEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGN 60
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE 121
GTIDFPEFL++MARK+ DS EE+ +AF+VFD+ G I A ELRHVMT LGE+L++DE
Sbjct: 61 GTIDFPEFLSLMARKMKEQDSEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDE 120
Query: 122 VNEMIQEADINGDGRINYEDFVTLMTS 148
V+EMI+EADI+GDG INYE+FV +M S
Sbjct: 121 VDEMIREADIDGDGHINYEEFVRMMVS 147
Score = 69.4 bits (171), Expect = 4e-16
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M +Q +EE + EAF F+R G+G I EL VM LG T+ E+ ++IRE D++
Sbjct: 76 MKEQDSEE---ELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDG 132
Query: 61 RGTIDFPEFLTVMARK 76
G I++ EF+ +M K
Sbjct: 133 DGHINYEEFVRMMVSK 148
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 220 bits (564), Expect = 3e-75
Identities = 99/148 (66%), Positives = 122/148 (82%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
MADQLTEEQI +FKEAFS F++ GDG I ELGTVMR LG PTEAEL D+I E+D +
Sbjct: 1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 60
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
GTIDFPEFLT+MARK+ DS EEI++AF+VFDK GYI A ELRHVMT LGE+L+++
Sbjct: 61 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 120
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
EV+EMI+EADI+GDG++NYE+FV +MT+
Sbjct: 121 EVDEMIREADIDGDGQVNYEEFVQMMTA 148
Score = 94.1 bits (235), Expect = 2e-25
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M D +EE+I +EAF F++ G+G I EL VM LG T+ E+ ++IRE D++
Sbjct: 77 MKDTDSEEEI---REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 133
Query: 61 RGTIDFPEFLTVMARKLNTPDST---EEIKQAFQVFDKHKQGYI 101
G +++ EF+ +M K + E I+ + K + +
Sbjct: 134 DGQVNYEEFVQMMTAKGGGGGAAARKEVIRNKIRAIGKMARVFS 177
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 216 bits (553), Expect = 6e-74
Identities = 73/147 (49%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M+ LTEEQI +FKEAF+ F++ G I EL TVMR LGL+P+EAE+ DL+ EIDV+
Sbjct: 1 MSQNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDG 60
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
I+F EFL +M+R+L DS +E+ +AF+VFDK+ G I A EL+HV+T++GE+L++
Sbjct: 61 NHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDA 120
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMT 147
EV+EM++E +G G IN + F L++
Sbjct: 121 EVDEMLREVS-DGSGEINIKQFAALLS 146
Score = 63.6 bits (156), Expect = 6e-14
Identities = 21/75 (28%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ +E+++ EAF F++ GDG I EL V+ +G T+AE+ +++RE+ +
Sbjct: 77 LKCNDSEQEL---LEAFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DG 132
Query: 61 RGTIDFPEFLTVMAR 75
G I+ +F ++++
Sbjct: 133 SGEINIKQFAALLSK 147
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 215 bits (551), Expect = 2e-73
Identities = 59/148 (39%), Positives = 84/148 (56%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ +L EEQ + EAFS F+ DG + HEL M+ LG + E+LDLI E D
Sbjct: 13 LNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEG 72
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
R + + +F VM K+ D +EIK+AFQ+FD G I LR V LGE L+++
Sbjct: 73 RHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELGETLTDE 132
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
E+ MI+E D++GDG IN +F+ + T
Sbjct: 133 ELRAMIEEFDLDGDGEINENEFIAICTD 160
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 213 bits (544), Expect = 3e-72
Identities = 66/146 (45%), Positives = 87/146 (59%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
LTEEQ + +EAF F+ G G I EL MR LG P + E+ +I EID +
Sbjct: 19 RVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGS 78
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE 121
GTIDF EFLT+M K+ DS EEI +AF++FD G I +LR V LGE L+E+E
Sbjct: 79 GTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEE 138
Query: 122 VNEMIQEADINGDGRINYEDFVTLMT 147
+ EMI EAD N D I+ ++F+ +M
Sbjct: 139 LQEMIAEADRNDDNEIDEDEFIRIMK 164
Score = 71.5 bits (176), Expect = 1e-16
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M ++ + E+I +AF F+ G I I +L V + LG TE EL ++I E D N
Sbjct: 94 MGERDSREEI---LKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRND 150
Query: 61 RGTIDFPEFLTVMARK 76
ID EF+ +M +
Sbjct: 151 DNEIDEDEFIRIMKKT 166
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 209 bits (534), Expect = 4e-71
Identities = 59/142 (41%), Positives = 89/142 (62%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTID 65
TEEQ + +EAF F+ G G I + EL MR LG P + E+ +I EID G ++
Sbjct: 1 TEEQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMN 60
Query: 66 FPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEM 125
F +FLTVM +K++ D+ EEI +AF++FD + G I L+ V LGE L+++E+ EM
Sbjct: 61 FGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEM 120
Query: 126 IQEADINGDGRINYEDFVTLMT 147
I EAD +GDG ++ ++F+ +M
Sbjct: 121 IDEADRDGDGEVSEQEFLRIMK 142
Score = 70.2 bits (173), Expect = 2e-16
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M+++ T+E+I +AF F+ G+I L V + LG T+ EL ++I E D +
Sbjct: 72 MSEKDTKEEI---LKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDG 128
Query: 61 RGTIDFPEFLTVMAR 75
G + EFL +M +
Sbjct: 129 DGEVSEQEFLRIMKK 143
Score = 26.3 bits (59), Expect = 2.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 118 SEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
+E++ E I+EA D +G G I+ ++ M +
Sbjct: 1 TEEQKQE-IREAFDLFDADGTGTIDVKELKVAMRA 34
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 218 bits (557), Expect = 8e-71
Identities = 97/148 (65%), Positives = 120/148 (81%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
DQLTEEQI +FKEAFS F++ GDG I ELGTVMR LG PTEAEL D+I E+D +
Sbjct: 302 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG 361
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
GTIDFPEFLT+MARK+ DS EEI++AF+VFDK GYI A ELRHVMT LGE+L+++
Sbjct: 362 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDE 421
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
EV+EMI+EADI+GDG++NYE+FV +MT+
Sbjct: 422 EVDEMIREADIDGDGQVNYEEFVQMMTA 449
Score = 121 bits (305), Expect = 1e-33
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 22/152 (14%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
D + + + F + E+ L+ I++
Sbjct: 239 DFFKSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGD------------TLVNRIEL---K 283
Query: 63 TIDFPEFLTVMARKLN-------TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE 115
IDF E ++ KL T + E K+AF +FDK G I EL VM +LG+
Sbjct: 284 GIDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQ 343
Query: 116 RLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
+E E+ +MI E D +G+G I++ +F+T+M
Sbjct: 344 NPTEAELQDMINEVDADGNGTIDFPEFLTMMA 375
Score = 73.0 bits (179), Expect = 4e-16
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M D +EE+I +EAF F++ G+G I EL VM LG T+ E+ ++IRE D++
Sbjct: 378 MKDTDSEEEI---REAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 434
Query: 61 RGTIDFPEFLTVMARK 76
G +++ EF+ +M K
Sbjct: 435 DGQVNYEEFVQMMTAK 450
Score = 41.0 bits (96), Expect = 5e-05
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 31/100 (31%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGER---------------------- 116
E Q +F K Y E++ TL R
Sbjct: 242 KSAMPEGYIQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYN 301
Query: 117 ----LSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
L+E+++ E +EA D +GDG I ++ T+M S
Sbjct: 302 TRDQLTEEQIAE-FKEAFSLFDKDGDGTITTKELGTVMRS 340
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 205 bits (524), Expect = 2e-69
Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 5/152 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M L E+I + +EAF F++ DG I +LG MR +G PTE EL++L ++I++N
Sbjct: 1 MDRSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNL 60
Query: 61 RGTIDFPEFLTVMARKLNTPD----STEEIKQAFQVFDKHKQGYICADELRHVMT-TLGE 115
G +DF +F+ +M KL +E++ AF+ FD + G I ELR M LG
Sbjct: 61 GGHVDFDDFVELMGPKLLAETADMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGH 120
Query: 116 RLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
++ ++ E+I++ D+NGDGR+++E+FV +M+
Sbjct: 121 QVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152
Score = 64.9 bits (159), Expect = 3e-14
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR-FLGLTPTEAELLDLIREIDVNQ 60
AD + +++ ++AF F+ GDG I EL MR LG ++ ++IR++D+N
Sbjct: 82 ADMIGVKEL---RDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNG 138
Query: 61 RGTIDFPEFLTVMAR 75
G +DF EF+ +M+R
Sbjct: 139 DGRVDFEEFVRMMSR 153
Score = 29.4 bits (67), Expect = 0.24
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 115 ERLSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
L +E+ E ++EA D + DG IN D M +
Sbjct: 3 RSLRPEEIEE-LREAFREFDKDKDGYINCRDLGNCMRT 39
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 203 bits (520), Expect = 5e-69
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 7 EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDF 66
++Q+++FKEAF F+ + G I L TV++ G+ A ++ E D G I F
Sbjct: 2 DDQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQF 61
Query: 67 PEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMI 126
PEFL++M R++ S + ++QAF+ FD GYI L+ + LG+RL E E +
Sbjct: 62 PEFLSMMGRRMKQTTSEDILRQAFRTFDPEGTGYIPKAALQDALLNLGDRLKPHEFAEFL 121
Query: 127 QEADINGDGRINYEDFVTLMTS 148
+ G+I Y++F+ M +
Sbjct: 122 GITETE-KGQIRYDNFINTMFT 142
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 204 bits (521), Expect = 7e-69
Identities = 60/148 (40%), Positives = 95/148 (64%), Gaps = 3/148 (2%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
L+EE I +FK AF F+ G G I ELGTVMR LG PT+ EL +I E+D + GT
Sbjct: 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGT 72
Query: 64 IDFPEFLTVMARKLN---TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
IDF EFL +M R++ S EE+ F++FDK+ G+I +EL ++ GE ++E+
Sbjct: 73 IDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEE 132
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
++ ++++++D N DGRI++++F+ +M
Sbjct: 133 DIEDLMKDSDKNNDGRIDFDEFLKMMEG 160
Score = 85.3 bits (212), Expect = 4e-22
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADIN 132
AR + + E K AF +FD G I EL VM LG+ +++E++ +I+E D +
Sbjct: 9 EARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDED 68
Query: 133 GDGRINYEDFVTLMT 147
G G I++E+F+ +M
Sbjct: 69 GSGTIDFEEFLVMMV 83
Score = 68.4 bits (168), Expect = 1e-15
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 1 MADQLTEEQIND----FKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI 56
M Q+ E+ F F++ DG I I ELG ++R G TE ++ DL+++
Sbjct: 82 MVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDS 141
Query: 57 DVNQRGTIDFPEFLTVM 73
D N G IDF EFL +M
Sbjct: 142 DKNNDGRIDFDEFLKMM 158
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 203 bits (520), Expect = 1e-68
Identities = 65/152 (42%), Positives = 95/152 (62%), Gaps = 4/152 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQG-DGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVN 59
+QLTEEQ N+FK AF F DG I ELG VMR LG PT EL ++I E+D +
Sbjct: 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDED 67
Query: 60 QRGTIDFPEFLTVMARKL---NTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGER 116
GT+DF EFL +M R + + S EE+ F++FDK+ GYI +EL+ ++ GE
Sbjct: 68 GSGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATGET 127
Query: 117 LSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
++ED++ E++++ D N DGRI+Y++F+ M
Sbjct: 128 ITEDDIEELMKDGDKNNDGRIDYDEFLEFMKG 159
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 201 bits (515), Expect = 4e-68
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+ QI +FKEAF+ ++ DG I +L ++ +G PT+ L ++ E G I
Sbjct: 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSEAP----GPI 56
Query: 65 DFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124
+F FLT+ KLN D + I+ AF FD+ G+I D LR ++TT+G+R +++EV+E
Sbjct: 57 NFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDE 116
Query: 125 MIQEADINGDGRINYEDFVTLMTS 148
M +EA I+ G NY +F ++
Sbjct: 117 MYREAPIDKKGNFNYVEFTRILKH 140
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 201 bits (514), Expect = 6e-68
Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQ-GDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVN 59
+L+ Q+ + AF F G GR+ ++G ++ LG+ T++ + LI E D
Sbjct: 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPF 62
Query: 60 QRGTIDFPEFLTVMARKL----NTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE 115
G IDF F + AR L N +E+++AF+++DK GYI D +R ++ L E
Sbjct: 63 GNGDIDFDSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELDE 122
Query: 116 RLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
LS ++++ MI E D +G G +++E+F+ +MT
Sbjct: 123 TLSSEDLDAMIDEIDADGSGTVDFEEFMGVMTG 155
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 199 bits (509), Expect = 3e-67
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 5/149 (3%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR-- 61
+ ++ +DFKEAF F+R GD +I ++G + R LG PT AE+ ++ +
Sbjct: 1 EFSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNA 60
Query: 62 GTIDFPEFLTVMARKLNT--PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSE 119
I F EFL ++ N + E+ + +VFDK G + ELRHV+ TLGE+++E
Sbjct: 61 AAITFEEFLPMLQAAANNKDQGTFEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTE 120
Query: 120 DEVNEMIQEADINGDGRINYEDFVTLMTS 148
+EV E+++ + + +G INYE FV + S
Sbjct: 121 EEVEELMKGQE-DSNGCINYEAFVKHIMS 148
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 199 bits (509), Expect = 4e-67
Identities = 39/148 (26%), Positives = 80/148 (54%), Gaps = 5/148 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ +L ++QI + KEAFS + DG + ++ + LG P + EL +++E
Sbjct: 8 VLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKEAP--- 64
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
G ++F FL++ + KL+ DS E I+ AF +FD+ + + + ++ ++ +G+ ++D
Sbjct: 65 -GPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKD 123
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
E+ +EA + G G+ +Y F ++
Sbjct: 124 EMRMTFKEAPVEG-GKFDYVKFTAMIKG 150
Score = 59.8 bits (146), Expect = 2e-12
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
++ +EE I + AF+ F+ Q ++ I + ++ +G + E+ +E V
Sbjct: 80 LSGTDSEETI---RNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG 136
Query: 61 RGTIDFPEFLTVMARK 76
G D+ +F ++
Sbjct: 137 -GKFDYVKFTAMIKGS 151
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 201 bits (512), Expect = 5e-67
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ T+ Q+ +FKEAF ++ DG I +++ LG TE EL ++ E
Sbjct: 47 VFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEAP--- 103
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
G I+F FLT+ ++ D + I AF +FD+ G + L+ +TT GE+ S+D
Sbjct: 104 -GPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGD-GKCKEETLKRSLTTWGEKFSQD 161
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMT 147
EV++ + EA I+G+G I+ + F ++T
Sbjct: 162 EVDQALSEAPIDGNGLIDIKKFAQILT 188
Score = 62.3 bits (152), Expect = 5e-13
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+A E+ I AF+ F+ +GDG+ L + G ++ E+ + E ++
Sbjct: 119 IAGTDEEDVI---VNAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDG 174
Query: 61 RGTIDFPEFLTVMARKLNTPDS 82
G ID +F ++ + +
Sbjct: 175 NGLIDIKKFAQILTKGAKEEGA 196
Score = 29.2 bits (66), Expect = 0.36
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 117 LSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
++ +V E +EA D + DG I+ D S
Sbjct: 51 FTQHQVQE-FKEAFQLIDQDKDGFISKNDIRATFDS 85
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 198 bits (505), Expect = 1e-66
Identities = 39/145 (26%), Positives = 80/145 (55%), Gaps = 5/145 (3%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
+L++ Q+ + KEAF+ ++ DG I + +L + LG P + EL +++E G
Sbjct: 9 KLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQ 64
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVN 123
++F FLT+ K++ D + ++ AF +FD+ QG+I D L+ ++ +G+ S++E+
Sbjct: 65 LNFTAFLTLFGEKVSGTDPEDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIK 124
Query: 124 EMIQEADINGDGRINYEDFVTLMTS 148
+ ++A + + + NY V +
Sbjct: 125 NVWKDAPLK-NKQFNYNKMVDIKGK 148
Score = 60.6 bits (148), Expect = 9e-13
Identities = 12/76 (15%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
++ E+ + + AFS F+ G G IP L ++ +G ++ E+ ++ ++ +
Sbjct: 78 VSGTDPEDAL---RNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKN 134
Query: 61 RGTIDFPEFLTVMARK 76
++ + + + +
Sbjct: 135 -KQFNYNKMVDIKGKA 149
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 197 bits (503), Expect = 5e-66
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ E +I DFKEAF+ ++ DG I +L +G + E LD +
Sbjct: 15 VFSMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELD---AMIKEA 71
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
G I+F FLT+ KL D + I AF+V D +G I L ++TT G R + +
Sbjct: 72 SGPINFTVFLTMFGEKLKGADPEDVIMGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPE 131
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMT 147
E+ M + G ++Y++ ++T
Sbjct: 132 EIKNMWAAFPPDVAGNVDYKNICYVIT 158
Score = 63.4 bits (155), Expect = 1e-13
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ E+ I AF + G G I L ++ G T E+ ++ +
Sbjct: 88 LKGADPEDVI---MGAFKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDV 144
Query: 61 RGTIDFPEFLTVMARK 76
G +D+ V+
Sbjct: 145 AGNVDYKNICYVITHG 160
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 196 bits (501), Expect = 8e-66
Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+A+ L+EE+I KE F+ + G+I EL ++ +G E+E+LDL++ DV+
Sbjct: 17 IAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDN 76
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
GTID+ EF+ LN + + + AF FDK GYI DEL+ G + +
Sbjct: 77 SGTIDYKEFIA-ATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFG--VEDV 133
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
+ E++++ D + DGRI+Y +FV +M
Sbjct: 134 RIEELMRDVDQDNDGRIDYNEFVAMMQK 161
Score = 83.3 bits (207), Expect = 3e-21
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 68 EFLTVMARKLN---TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124
+F + R + + + +K+ F + D K G I +EL+ + +G L E E+ +
Sbjct: 8 KFKKMALRVIAESLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILD 67
Query: 125 MIQEADINGDGRINYEDFVTLM 146
++Q AD++ G I+Y++F+
Sbjct: 68 LMQAADVDNSGTIDYKEFIAAT 89
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 195 bits (498), Expect = 1e-65
Identities = 49/142 (34%), Positives = 80/142 (56%), Gaps = 4/142 (2%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFP 67
+ +E F F++ DG++ I ELG+ +R LG PT AEL + +++ D
Sbjct: 2 ASADQIQECFQIFDKDNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAK---EFDLA 58
Query: 68 EFLTVMARKLNTP-DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMI 126
F TV + + TP + ++E+ AF+ DK G I ELR ++ LG+ L+ EV E++
Sbjct: 59 TFKTVYRKPIKTPTEQSKEMLDAFRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELM 118
Query: 127 QEADINGDGRINYEDFVTLMTS 148
+E ++GDG INYE FV ++ +
Sbjct: 119 KEVSVSGDGAINYESFVDMLVT 140
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 195 bits (498), Expect = 2e-65
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 4 QLTEEQINDFKEAFSFF--NRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
+L++++I+D K+ F F DG + +LG V R LG+ P ++ +
Sbjct: 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFA-VGGTHKMGE 60
Query: 62 GTIDFPEFLTVMARKLNT-PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
++ F EFL ++ + + +AF+ FD+ QG+I ELRHV+T LGERLS++
Sbjct: 61 KSLPFEEFLPAYEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDE 120
Query: 121 EVNEMIQEADIN--GDGRINYEDFVTLMTS 148
+V+E+I+ D+ +G + YEDFV + +
Sbjct: 121 DVDEIIKLTDLQEDLEGNVKYEDFVKKVMA 150
Score = 61.4 bits (150), Expect = 6e-13
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 1 MADQLTEEQ--INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDV 58
+ EQ D+ EAF F+R+G G I EL V+ LG ++ ++ ++I+ D+
Sbjct: 72 YEGLMDCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDL 131
Query: 59 NQ--RGTIDFPEFLTVMARK 76
+ G + + +F+ +
Sbjct: 132 QEDLEGNVKYEDFVKKVMAG 151
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 195 bits (497), Expect = 7e-65
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
A++L+EE+I KE F + G I EL ++ +G E+E+ DL+ D+++
Sbjct: 1 AERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKS 60
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE 121
GTID+ EF+ LN + E + AF FDK GYI DE++ G L +
Sbjct: 61 GTIDYGEFIAATVH-LNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFG--LDDIH 117
Query: 122 VNEMIQEADINGDGRINYEDFVTLMTS 148
+++MI+E D + DG+I+Y +F +M
Sbjct: 118 IDDMIKEIDQDNDGQIDYGEFAAMMRK 144
Score = 88.8 bits (221), Expect = 3e-23
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 12/117 (10%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ EE + AFS+F++ G G I + E+ + GL + + D+I+EID +
Sbjct: 75 LNKLEREENL---VSAFSYFDKDGSGYITLDEIQQACKDFGLD--DIHIDDMIKEIDQDN 129
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEE-------IKQAFQVFDKHKQGYICADELRHVM 110
G ID+ EF +M ++ ++ A + D I H
Sbjct: 130 DGQIDYGEFAAMMRKRKGNGGIGRRTMRKTLNLRDALGLVDNGSNQVIEGYFKHHHH 186
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 192 bits (491), Expect = 1e-64
Identities = 29/144 (20%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
Q EE++++ F + G+I I R LGL P+ + +
Sbjct: 8 QQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DN 63
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVN 123
+ + ++L ++ ++ D+ EE+ + F FD + GY+ ++++++TT G+ L++ E
Sbjct: 64 LTYEQYLEYLSICVHDKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAI 123
Query: 124 EMIQEADINGDGRINYEDFVTLMT 147
+ + + I+Y+ F +
Sbjct: 124 DALNAFS--SEDNIDYKLFCEDIL 145
Score = 64.9 bits (159), Expect = 2e-14
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADIN 132
+A + +E +K G I D + LG S + ++ +
Sbjct: 4 VADIQQLEEKVDESDVRIYFNEKSSGGKISIDNASYNARKLGLAPSSIDEKKIKELY--- 60
Query: 133 GDGRINYEDFVTLMTS 148
+ YE ++ ++
Sbjct: 61 -GDNLTYEQYLEYLSI 75
Score = 58.8 bits (143), Expect = 5e-12
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+ D+ E++ + F+ F+ G + ++ ++ G T+ E +D +
Sbjct: 77 VHDKDNVEEL---IKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSE- 132
Query: 61 RGTIDFPEFLTVMAR 75
ID+ F + +
Sbjct: 133 -DNIDYKLFCEDILQ 146
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 194 bits (496), Expect = 1e-64
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 3/149 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+A L + +IN+ + F + G + E+ ++ +G ++ ++R+ID N
Sbjct: 47 IAKHLCDVEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNA 106
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVM--TTLGERLS 118
G I + +FL K T E F+ FD G I +EL+ + + L
Sbjct: 107 SGQIHYTDFLAATIDK-QTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLI 165
Query: 119 EDEVNEMIQEADINGDGRINYEDFVTLMT 147
+ ++ ++QE D+NGDG I++ +F+ +M+
Sbjct: 166 DKAIDSLLQEVDLNGDGEIDFHEFMLMMS 194
Score = 65.3 bits (160), Expect = 4e-14
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVM--RFLGLTPTEAELLDLIREIDV 58
D+ T + F FF+ G+G+I + EL + + + + L++E+D+
Sbjct: 119 TIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDL 178
Query: 59 NQRGTIDFPEFLTVMARK 76
N G IDF EF+ +M++K
Sbjct: 179 NGDGEIDFHEFMLMMSKK 196
Score = 32.6 bits (75), Expect = 0.029
Identities = 6/46 (13%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 107 RHVMTTLGERLSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
+ +T + + L + E+N ++ D++ G ++ ++ + +
Sbjct: 41 KIALTIIAKHLCDVEINN-LRNIFIALDVDNSGTLSSQEILDGLKK 85
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 191 bits (487), Expect = 6e-64
Identities = 39/146 (26%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIR-EIDVNQRGTIDFP 67
K+ F+ F+++G G I LG +R +G PT + D+I + + ++
Sbjct: 2 ATRANKDIFTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
Query: 68 EFLTVMARKLNTPDST-----EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEV 122
+ ++ D+T E+ +AFQVFDK G + +LR+++T LGE+L++ EV
Sbjct: 62 QITGLIEVNEKELDATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEV 121
Query: 123 NEMIQEADINGDGRINYEDFVTLMTS 148
+E+++ +++ +G I+Y+ F+ +
Sbjct: 122 DELLKGVEVDSNGEIDYKKFIEDVLR 147
Score = 69.5 bits (171), Expect = 4e-16
Identities = 21/74 (28%), Positives = 46/74 (62%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
D T+ + DF +AF F+++ G++ + +L ++ LG T+AE+ +L++ ++V+ G
Sbjct: 75 DATTKAKTEDFVKAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNG 134
Query: 63 TIDFPEFLTVMARK 76
ID+ +F+ + R+
Sbjct: 135 EIDYKKFIEDVLRQ 148
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 191 bits (488), Expect = 6e-64
Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 4 QLTEEQINDFKEAFSFF--NRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
QLT+++I + +E F F DG + ++G ++R LG+ PTEA++
Sbjct: 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGE 60
Query: 62 GTIDFPEFLTVMAR--KLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSE 119
E L + +T + +E +AF+ FD+ QG I + E+R+V+ LGER++E
Sbjct: 61 KAYKLEEILPIYEEMSSKDTGTAADEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITE 120
Query: 120 DEVNEMIQEADI--NGDGRINYEDFVTLMTS 148
D+ N++ DI + DG I YED + + +
Sbjct: 121 DQCNDIFTFCDIREDIDGNIKYEDLMKKVMA 151
Score = 59.1 bits (144), Expect = 5e-12
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDV-- 58
+ +F EAF F+R+G G I E+ V++ LG TE + D+ D+
Sbjct: 78 KDTGTAAD---EFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIRE 134
Query: 59 NQRGTIDFPEFLTVMARKLNTPDSTE 84
+ G I + + + + PD ++
Sbjct: 135 DIDGNIKYEDLMKKVMAG-PFPDKSD 159
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 191 bits (487), Expect = 7e-64
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR- 61
+ ++Q+ +FKEAF F+R GDG+I + G VMR LG PT AE+L ++ ++
Sbjct: 2 IEFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELK 61
Query: 62 -GTIDFPEFLTVMAR--KLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS 118
+DF FL ++ K + E+ + F+VFDK G + ELRHV+TTLGE+++
Sbjct: 62 SRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMT 121
Query: 119 EDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E+EV ++ + +G INYE F+ + S
Sbjct: 122 EEEVETVL-AGHEDSNGCINYEAFLKHILS 150
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 188 bits (481), Expect = 4e-63
Identities = 56/143 (39%), Positives = 83/143 (58%), Gaps = 7/143 (4%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFP 67
+ +K+AFS F+R G GRIP +G ++R G PT AE I EI+ +D
Sbjct: 2 TDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDME 57
Query: 68 EFLTVMARKLN--TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEM 125
+FL V+ R P EE + FQVFDK G I ELR+V+T+LGE+LS +E++E+
Sbjct: 58 QFLQVLNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDEL 117
Query: 126 IQEADINGDGRINYEDFVTLMTS 148
++ + DG +NY DFV ++ +
Sbjct: 118 LKGVPVK-DGMVNYHDFVQMILA 139
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 179 bits (457), Expect = 8e-59
Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 8/151 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
+A Q + + K F + G G I +L + G L+ +ID +
Sbjct: 42 IAQQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDG-LKLPYNFDLLLDQIDSDG 100
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS-- 118
G ID+ EF+ + S + I AF+VFD G I EL H++ ++ +
Sbjct: 101 SGKIDYTEFIAAALDR--KQLSKKLIYCAFRVFDVDNDGEITTAELAHILYNGNKKGNIT 158
Query: 119 ---EDEVNEMIQEADINGDGRINYEDFVTLM 146
+ V MI++ D N DG+I++ +F +M
Sbjct: 159 QRDVNRVKRMIRDVDKNNDGKIDFHEFSEMM 189
Score = 80.4 bits (199), Expect = 6e-20
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQ 127
+T++A++ E++K F V D+ +GYI ++L+ + G +L + ++
Sbjct: 37 LAMTIIAQQS-NDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPY-NFDLLLD 94
Query: 128 EADINGDGRINYEDFVTLMT 147
+ D +G G+I+Y +F+
Sbjct: 95 QIDSDGSGKIDYTEFIAAAL 114
Score = 31.1 bits (71), Expect = 0.077
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 109 VMTTLGERLSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
MT + ++ ++ +V + ++ D +G G I E +
Sbjct: 38 AMTIIAQQSNDYDVEK-LKSTFLVLDEDGKGYITKEQLKKGLEK 80
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 176 bits (447), Expect = 3e-57
Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 20/167 (11%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHEL-----GTVMRFLGLTPTEAELLDLIRE 55
D I K F F + G+G+I + E+ + L TP + + + E
Sbjct: 10 KTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVE 69
Query: 56 IDVNQRGT-----IDFPEFLTVMARKLNTP----------DSTEEIKQAFQVFDKHKQGY 100
G I FP+FL + + E F +FDK G
Sbjct: 70 AFFRGCGMEYGKEIAFPQFLDGWKQLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGT 129
Query: 101 ICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
I DE + G S+++ + D++ G ++ ++
Sbjct: 130 ITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHL 176
Score = 68.6 bits (168), Expect = 2e-15
Identities = 15/79 (18%), Positives = 28/79 (35%)
Query: 7 EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDF 66
F F++ G G I + E + G++P++ + R D++ G +D
Sbjct: 109 TLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDV 168
Query: 67 PEFLTVMARKLNTPDSTEE 85
E T D +
Sbjct: 169 DEMTRQHLGFWYTLDPEAD 187
Score = 66.7 bits (163), Expect = 1e-14
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRH-----VMTTLGERLSEDEVNE 124
+ + P + K F D + G I DE+ + L + + ++
Sbjct: 7 VKLKTDFD-NPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQ 65
Query: 125 MIQEADINGDG-----RINYEDFVTLMTS 148
+ EA G G I + F+
Sbjct: 66 VCVEAFFRGCGMEYGKEIAFPQFLDGWKQ 94
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 169 bits (430), Expect = 1e-54
Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 15/160 (9%)
Query: 1 MADQL-TEEQINDFKEAFSFFNRQGDGRIPIHEL-----------GTVMRFLGLTPTEAE 48
M +L T E+ + + F + GDG++ EL G + L + EAE
Sbjct: 29 MGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAE 88
Query: 49 LLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRH 108
+ +++ +D ++ G I++ EF+TV K S E + AFQ FD G I +EL
Sbjct: 89 VDHILQSVDFDRNGYIEYSEFVTVCMDKQLL-LSRERLLAAFQQFDSDGSGKITNEELGR 147
Query: 109 VMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+ + ++ ++++QE D N DG +++E+FV +M
Sbjct: 148 LFG--VTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQK 185
Score = 83.1 bits (206), Expect = 5e-21
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 11/91 (12%)
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELR-----------HVMTTLGER 116
+ M KL T + T+E+ Q F+ D + G + EL ++ L
Sbjct: 24 AAMLFMGSKLTTLEETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSS 83
Query: 117 LSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
E EV+ ++Q D + +G I Y +FVT+
Sbjct: 84 QIEAEVDHILQSVDFDRNGYIEYSEFVTVCM 114
Score = 61.1 bits (149), Expect = 1e-12
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
D+ AF F+ G G+I ELG + + + +++E D N
Sbjct: 113 CMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVD--DETWHQVLQECDKNN 170
Query: 61 RGTIDFPEFLTVMARKLNT 79
G +DF EF+ +M + +
Sbjct: 171 DGEVDFEEFVEMMQKICDV 189
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 166 bits (422), Expect = 3e-54
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 6/135 (4%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73
+ F + GDG + E+ + E L + + ID + G ID EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 74 ARKL--NTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADI 131
+ D +K +++ D G + +E+ G ++V E + +AD
Sbjct: 63 GSIQGQDLSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHG----IEKVAEQVMKADA 118
Query: 132 NGDGRINYEDFVTLM 146
NGDG I E+F+
Sbjct: 119 NGDGYITLEEFLEFS 133
Score = 76.8 bits (190), Expect = 4e-19
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 87 KQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+ F+ D + G + +E++ ++ +E + + + D +G+G I+ +F
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 147 TS 148
S
Sbjct: 63 GS 64
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 166 bits (423), Expect = 1e-53
Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 7/144 (4%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
+ E F + G G I + EL + G+ + A L+ D N G
Sbjct: 20 ARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGE 79
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVN 123
I F EF + +++ F+ D G + ++E+R + + G ++SE
Sbjct: 80 ITFDEFKDLHHFI-------LSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQ 132
Query: 124 EMIQEADINGDGRINYEDFVTLMT 147
++++ D G + ++D+V L
Sbjct: 133 ALMRKFDRQRRGSLGFDDYVELSI 156
Score = 89.3 bits (222), Expect = 3e-23
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 65 DFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124
P V A + +E+ + F+ D G I EL +++ G S +
Sbjct: 8 HMPTSTGVYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEK 67
Query: 125 MIQEADINGDGRINYEDFVTLMTS 148
++ D N G I +++F L
Sbjct: 68 LLHMYDKNHSGEITFDEFKDLHHF 91
Score = 79.3 bits (196), Expect = 2e-19
Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEF 69
I +E F + GDGR+ +E+ + G +E L+R+ D +RG++ F ++
Sbjct: 92 ILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDY 151
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYI 101
+ + ++ F +D+ + G +
Sbjct: 152 VELSIFV-------CRVRNVFAFYDRERTGQV 176
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 162 bits (411), Expect = 1e-51
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 9/155 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
I F +R G + E + LGL +AE + R+ D N
Sbjct: 27 QCLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNG 86
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELR-------HVMTTL 113
GT+D EFL + ++ I AF D+ G + D+LR H
Sbjct: 87 SGTLDLEEFLRALRPPMS-QAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRS 145
Query: 114 GERLSEDEVNEMIQEADIN-GDGRINYEDFVTLMT 147
GE ++ + + D + DG++ +F +
Sbjct: 146 GEWTEDEVLRRFLDNFDSSEKDGQVTLAEFQDYYS 180
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 157 bits (398), Expect = 5e-50
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 16/158 (10%)
Query: 1 MADQLT--EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDV 58
MA +L+ I E F + +G + E+ TV+ +G+ + ++ +++ +D+
Sbjct: 27 MAHELSVINNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGI--KKWDINRILQALDI 84
Query: 59 NQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS 118
N RG I + EF+ R N + +K AF DK + GYI ++ ++ + L
Sbjct: 85 NDRGNITYTEFMAGCYRWKN--IESTFLKAAFNKIDKDEDGYISKSDIVSLVH--DKVLD 140
Query: 119 EDEVNEMIQEADINGDG--------RINYEDFVTLMTS 148
++++ G +I++++F M S
Sbjct: 141 NNDIDNFFLSVHSIKKGIPREHIINKISFQEFKDYMLS 178
Score = 51.5 bits (124), Expect = 4e-09
Identities = 13/82 (15%), Positives = 29/82 (35%), Gaps = 13/82 (15%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
+ + K AF+ ++ DG I ++ +++ L ++ + + ++G
Sbjct: 104 NIESTFL---KAAFNKIDKDEDGYISKSDIVSLVHDKVLD--NNDIDNFFLSVHSIKKGI 158
Query: 64 --------IDFPEFLTVMARKL 77
I F EF M
Sbjct: 159 PREHIINKISFQEFKDYMLSTF 180
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 155 bits (393), Expect = 4e-49
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 20/166 (12%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHEL-----GTVMRFLGLTPTEAELLDLIREI 56
+D I K F+F + +G+I + E+ V+ LG TP +A+ E
Sbjct: 7 SDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEA 66
Query: 57 DVNQRGT-----IDFPEFLTVMARKLNTPDST----------EEIKQAFQVFDKHKQGYI 101
G D+P ++ + F + DK + G I
Sbjct: 67 FFGGAGMKYGVETDWPAYIEGWKKLATDELEKYAKNEPTLIRIWGDALFDIVDKDQNGAI 126
Query: 102 CADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
DE + G S ++ E + DI+ G+++ ++
Sbjct: 127 TLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHL 172
Score = 65.2 bits (159), Expect = 3e-14
Identities = 14/85 (16%), Positives = 27/85 (31%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
A F ++ +G I + E + G+ + + + R D+++
Sbjct: 99 YAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDE 158
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEE 85
G +D E T D E
Sbjct: 159 SGQLDVDEMTRQHLGFWYTMDPACE 183
Score = 59.0 bits (143), Expect = 8e-12
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHKQGYICADEL-----RHVMTTLGERLSEDEVNEMIQ 127
+ + P K F D + G I DE+ V+ LG + + ++
Sbjct: 5 LTSDFDNPRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAV 64
Query: 128 EADINGDG-----RINYEDFVTLMT 147
EA G G ++ ++
Sbjct: 65 EAFFGGAGMKYGVETDWPAYIEGWK 89
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 157 bits (399), Expect = 1e-48
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 8/148 (5%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
L+EE N ++ F G G+ +L V+ T E L L ++ +
Sbjct: 112 SKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDT 171
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
+G + + + V + F+ D + G + E R LG +
Sbjct: 172 KGRMSYITLVAVANDL-------AALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKS 223
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
+ + + AD + + + ++V L
Sbjct: 224 VQDALFRYADEDESDDVGFSEYVHLGLC 251
Score = 129 bits (325), Expect = 2e-37
Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 9/140 (6%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFP 67
+ F + +G + E LG ++ L R D ++ + F
Sbjct: 185 NDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDDVGFS 243
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLSEDEVNEMI 126
E++ + ++ + D K G + +E++ V+ + +
Sbjct: 244 EYVHLGLCL-------LVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQF 296
Query: 127 QEADINGDGRINYEDFVTLM 146
D++ ++Y++FV L+
Sbjct: 297 SVVDVDDSKSLSYQEFVMLV 316
Score = 89.5 bits (222), Expect = 2e-22
Identities = 20/148 (13%), Positives = 51/148 (34%), Gaps = 12/148 (8%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL---TPTEAELLDLIREIDVNQ 60
Q +EQ E ++++ E R + L L+++++ +
Sbjct: 48 QKEQEQKAKLAE----YDQKVQNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDDA 103
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED 120
G ++ + + T ++Q F G +L+ V+ + + E
Sbjct: 104 SGYNRLRPSKPML-----SEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEG 158
Query: 121 EVNEMIQEADINGDGRINYEDFVTLMTS 148
+ ++ + + GR++Y V +
Sbjct: 159 PLKKLFVMVENDTKGRMSYITLVAVAND 186
Score = 61.4 bits (149), Expect = 4e-12
Identities = 8/71 (11%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL-TPTEAELLDLIREIDVNQRGTIDFP 67
+ + ++F + G++ E+ V+ + + +DV+ ++ +
Sbjct: 251 CLLVLRILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
Query: 68 EFLTVMARKLN 78
EF+ ++ +
Sbjct: 311 EFVMLVLLMFH 321
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 151 bits (383), Expect = 4e-48
Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 7 EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDF 66
++I + F + G + + E + + L P + I D + G +DF
Sbjct: 2 ADEIKRLGKRFKKLDLDNSGSLSVEEFMS-LPELQQNPLVQRV---IDIFDTDGNGEVDF 57
Query: 67 PEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL-GERLSEDE---- 121
EF+ +++ D ++++ AF+++D K GYI EL V+ + G L + +
Sbjct: 58 KEFIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQI 117
Query: 122 VNEMIQEADINGDGRINYEDFVTLMTS 148
V++ I AD +GDGRI++E+F ++
Sbjct: 118 VDKTIINADKDGDGRISFEEFCAVVGG 144
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 151 bits (384), Expect = 6e-47
Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 22/166 (13%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEA------ELLDLIREID 57
Q + + F E + F+ G G + EL +++ L +A E+ + +
Sbjct: 9 QSSLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYG 68
Query: 58 VNQRGTIDFPEFLTVMAR--------KLNTPDSTEEIKQAFQVFDKHKQGYICADELRHV 109
G I E V+ + S EE + ++ +D G+I +EL++
Sbjct: 69 QRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCEEFMKTWRKYDTDHSGFIETEELKNF 128
Query: 110 MTTLGERLS--------EDEVNEMIQEADINGDGRINYEDFVTLMT 147
+ L E+ + + + M++ D N DG++ + L+
Sbjct: 129 LKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELTEMARLLP 174
Score = 121 bits (306), Expect = 3e-35
Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 23/168 (13%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEA--------ELLDL 52
+ E +F + + ++ G I EL ++ L + +
Sbjct: 96 CQQLKSCE---EFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLM 152
Query: 53 IREIDVNQRGTIDFPEFLTVMARKLN-------TPDSTEEIKQAFQVFDKHKQGYICADE 105
++ D N G ++ E ++ + N +E +AF+++D+ GYI +E
Sbjct: 153 LKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENE 212
Query: 106 LRHVMTTLGERLSEDEVNEMIQE-----ADINGDGRINYEDFVTLMTS 148
L ++ L E+ ++ I ++ G++ D ++++
Sbjct: 213 LDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALILSA 260
Score = 70.3 bits (172), Expect = 1e-15
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSED------EVNEMIQEADIN 132
+ + + + + FD GY+ EL++++ L + + E+ + +
Sbjct: 11 SLITASQFFEIWLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQR 70
Query: 133 GDGRINYEDFVTLMTS 148
DG+I + ++ +
Sbjct: 71 DDGKIGIVELAHVLPT 86
Score = 49.9 bits (119), Expect = 3e-08
Identities = 13/83 (15%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREI---- 56
+ Q + +F +AF +++ G+G I +EL +++ L + ++ I
Sbjct: 181 LKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNISTYKKNI 240
Query: 57 -DVNQRGTIDFPEFLTVMARKLN 78
++ G + + +++ N
Sbjct: 241 MALSDGGKLYRTDLALILSAGDN 263
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 147 bits (372), Expect = 1e-45
Identities = 28/159 (17%), Positives = 58/159 (36%), Gaps = 12/159 (7%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGT-VMRFLGLTPTEAELLDLI------ 53
+ + T E E F F++ G++ E+ + + L L + + D+
Sbjct: 38 IPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDK 97
Query: 54 ---REIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVM 110
+ +G+ DF EFL L E+ F D + +E + +
Sbjct: 98 SRTLGSKLENKGSEDFVEFLEFRLM-LCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAV 156
Query: 111 TTLG-ERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
L ++ + +E D NG G + +++F ++
Sbjct: 157 PKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWASA 195
Score = 61.1 bits (148), Expect = 2e-12
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP-TEAELLDLIREIDVN 59
+ F + G+ + E + L + L +E+D N
Sbjct: 120 RLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKN 179
Query: 60 QRGTIDFPEFLTVMARKLNTPDSTEE 85
G++ F EF + D +
Sbjct: 180 GTGSVTFDEFAAWASAVKLDADGDPD 205
Score = 53.7 bits (129), Expect = 1e-09
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 13/90 (14%)
Query: 70 LTVMARKLNTPDSTEEIKQA---FQVFDKHKQGYICADELRH-VMTTLGERLSEDEVNEM 125
+ + + + E ++ F+ FDK++ G +C DE+ + L V ++
Sbjct: 31 WERIRQAIPREKTAEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDI 90
Query: 126 IQEA---------DINGDGRINYEDFVTLM 146
+ A + G ++ +F+
Sbjct: 91 TKRAFDKSRTLGSKLENKGSEDFVEFLEFR 120
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 145 bits (367), Expect = 2e-45
Identities = 30/141 (21%), Positives = 57/141 (40%), Gaps = 8/141 (5%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP-TEAELLDLIREIDVNQRGTIDF 66
+ F ++ G I EL + TP + +I D + ++F
Sbjct: 4 PDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNF 63
Query: 67 PEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMI 126
EF V + + F+ +D+ G I +EL+ ++ G RLS+ + +I
Sbjct: 64 SEFTGVWKYI-------TDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILI 116
Query: 127 QEADINGDGRINYEDFVTLMT 147
++ D G G+I ++DF+
Sbjct: 117 RKFDRQGRGQIAFDDFIQGCI 137
Score = 76.9 bits (190), Expect = 1e-18
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEF 69
I D++ F ++R G I +EL + G ++ LIR+ D RG I F +F
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDF 132
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113
+ + + F+ +D + G+I +++
Sbjct: 133 IQGCIVL-------QRLTDIFRRYDTDQDGWIQVSYEQYLSMVF 169
Score = 68.4 bits (168), Expect = 2e-15
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 80 PDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG-ERLSEDEVNEMIQEADINGDGRIN 138
+ FQ DK + G I EL+ ++ + V +I D +N
Sbjct: 3 LPDQSFLWNVFQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVN 62
Query: 139 YEDFVTLMT 147
+ +F +
Sbjct: 63 FSEFTGVWK 71
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 143 bits (363), Expect = 1e-44
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 15/163 (9%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR----FLGLTPTEAE-----LLD 51
+ + + K + GDG I + + L+ +AE L
Sbjct: 4 ITESERAYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLR 63
Query: 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQ------AFQVFDKHKQGYICADE 105
+ ++ + I E L E+ + D K GY+ E
Sbjct: 64 VADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPE 123
Query: 106 LRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+ + +G L++D+ D N +G+I+ ++F+ +
Sbjct: 124 FKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVND 166
Score = 62.1 bits (151), Expect = 6e-13
Identities = 15/84 (17%), Positives = 31/84 (36%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M + + + + DG + + E ++ +G T+ + + +D N+
Sbjct: 92 MKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNK 151
Query: 61 RGTIDFPEFLTVMARKLNTPDSTE 84
G I EFL + L + T
Sbjct: 152 NGQISRDEFLVTVNDFLFGLEETA 175
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 141 bits (358), Expect = 1e-43
Identities = 20/165 (12%), Positives = 51/165 (30%), Gaps = 21/165 (12%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG---------LTPTEAELLDL 52
+ L + ++ + F F+ DG++ + E+ + + +
Sbjct: 27 VEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVF 86
Query: 53 IREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQ----------AFQVFDKHKQGYIC 102
V + +++ E + + V D G +
Sbjct: 87 FLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVD 146
Query: 103 ADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
DEL+ +M + ++ ++AD + G++ + V L
Sbjct: 147 VDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERTELVHLFR 189
Score = 53.3 bits (128), Expect = 1e-09
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73
+ + GDG + + EL T+M+ + A + D ++ G ++ E + +
Sbjct: 131 NSYYDVLDDDGDGTVDVDELKTMMKAFDVPQEAAY--TFFEKADTDKSGKLERTELVHLF 188
Query: 74 ARKLNTPDSTE 84
+ P +
Sbjct: 189 RKFWMEPYDPQ 199
Score = 30.6 bits (69), Expect = 0.13
Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 115 ERLSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
E L ++ + + D++ DG++ ++ +
Sbjct: 28 EDLHPKMLSR-LYKRFDTFDLDSDGKMEMDEVLYWPDR 64
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 139 bits (353), Expect = 5e-43
Identities = 32/166 (19%), Positives = 66/166 (39%), Gaps = 25/166 (15%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
++ + F +R G + +L + L + P + I +
Sbjct: 22 GFSQASLLRLHHRFRALDRNKKGYLSRMDLQQ-IGALAVNPLGDRI---IESFFPDGSQR 77
Query: 64 IDFPEFLTVMARKLNTPDST----------------EEIKQAFQVFDKHKQGYICADELR 107
+DFP F+ V+A D ++ AFQ++D + G I E+
Sbjct: 78 VDFPGFVRVLAHFRPVEDEDTETQDPKKPEPLNSRRNKLHYAFQLYDLDRDGKISRHEML 137
Query: 108 HVMTTL-GERLSEDE----VNEMIQEADINGDGRINYEDFVTLMTS 148
V+ + G +++E++ + +QEAD +GDG +++ +F +
Sbjct: 138 QVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEK 183
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 137 bits (347), Expect = 8e-43
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 46 EAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADE 105
E ++ E + + + L VMA K++ + E+ + F + ++ I A+
Sbjct: 2 EPTEKSMLLETTSTTKMETKYEDMLPVMAEKMDVEEFVSELCKGFSLLADPERHLITAES 61
Query: 106 LRHVMTTLG-ERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
LR LG E +S+++ M++E D++GDG +N +F LM
Sbjct: 62 LRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQTEFCVLMV 104
Score = 62.7 bits (153), Expect = 1e-13
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 1 MADQLTEE-QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP-TEAELLDLIREIDV 58
MA+++ E +++ + FS I L LG+ ++ + ++RE D+
Sbjct: 29 MAEKMDVEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDL 88
Query: 59 NQRGTIDFPEFLTVMARKLNTP--DSTEEIKQAFQ 91
+ G ++ EF +M R D+ +++A
Sbjct: 89 DGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALT 123
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 134 bits (338), Expect = 4e-41
Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 23/161 (14%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG---------------LTPTEAELLDL 52
E F+ F++ G+G I + + + EA L
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 53 IREIDVNQRGTIDFPEFLTVMARKLNTPDSTEE------IKQAFQVFDKHKQGYICADEL 106
D + I EF+T ++L + A V D G + +
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVADT 120
Query: 107 RHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
+T G + ED + D +GDG++ + V
Sbjct: 121 ARALTAFG--VPEDLARQAAAALDTDGDGKVGETEIVPAFA 159
Score = 55.9 bits (135), Expect = 7e-11
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
D+ E A + GDG + + + + G+ A +D + G
Sbjct: 90 DRFAEMARPFLHAALGVADTDGDGAVTVADTARALTAFGVPEDLAR--QAAAALDTDGDG 147
Query: 63 TIDFPEFLTVMAR 75
+ E + AR
Sbjct: 148 KVGETEIVPAFAR 160
Score = 27.8 bits (62), Expect = 0.90
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 118 SEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E + D +G+G I+ DF +
Sbjct: 2 YERRIAARFTTFDQDGNGHIDRSDFSGAAKA 32
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 132 bits (334), Expect = 2e-40
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 24/163 (14%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHEL----GTVMRFLGLTPTEAELLDL--------- 52
T + K+ F ++ G+G + + + G AE+ L
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 53 --IREIDVNQRGTIDFPEFLTVMARKLNTPDS-------TEEIKQAFQVFDKHKQGYICA 103
+E V G++ +F+ V + +K + DK+ G I A
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINA 121
Query: 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
DE +T LG +S+ E E + D NG+G ++ ++ +T +
Sbjct: 122 DEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLDELLTAV 162
Score = 57.8 bits (140), Expect = 2e-11
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 15/85 (17%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADEL----RHVMTTLGERLSEDEVNE---------- 124
T +++ +K+ F +D G + + +H+ G+ EV
Sbjct: 2 TAIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFD 61
Query: 125 -MIQEADINGDGRINYEDFVTLMTS 148
+ +EA + DG + E F+ + +
Sbjct: 62 YLAKEAGVGSDGSLTEEQFIRVTEN 86
Score = 55.5 bits (134), Expect = 1e-10
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
K ++ DG+I E + LG++ EA + ++D N G
Sbjct: 94 ASFNRVLGPVVKGIVGMCDKNADGQINADEFAAWLTALGMSKAEAA--EAFNQVDTNGNG 151
Query: 63 TIDFPEFLTVMARKLNTPDSTE 84
+ E LT + E
Sbjct: 152 ELSLDELLTAVRDFHFGRLDVE 173
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 129 bits (326), Expect = 6e-40
Identities = 24/109 (22%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 43 TPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYIC 102
++ + + G+ + +F ++ K S ++K+ F+ D G+I
Sbjct: 6 LLKADDIKKALDAVKAE--GSFNHKKFFALVGLKA---MSANDVKKVFKAIDADASGFIE 60
Query: 103 ADELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+EL+ V+ + G L++ E ++ AD +GDG+I ++F TL+
Sbjct: 61 EEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGIDEFETLVHE 109
Score = 58.0 bits (141), Expect = 4e-12
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFL---GLTPTEAELLDLIREID 57
+ + ND K+ F + G I EL V++ G T+AE ++ D
Sbjct: 34 VGLKAMSA--NDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAAD 91
Query: 58 VNQRGTIDFPEFLTVMA 74
+ G I EF T++
Sbjct: 92 KDGDGKIGIDEFETLVH 108
Score = 36.8 bits (86), Expect = 3e-04
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 113 LGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
+ L D++ + + +G N++ F L+
Sbjct: 3 AKDLLKADDIKKALDAVK--AEGSFNHKKFFALVG 35
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 125 bits (317), Expect = 8e-38
Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 17/156 (10%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTE-----AELLDLIREI---- 56
++ + K F+ + DG I + ++ L+D + +
Sbjct: 1 SDLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNF 60
Query: 57 --DVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQ----AFQVFDKHKQGYICADELRHVM 110
V ID F+ M + P++ ++ F+ D ++ I DE
Sbjct: 61 LTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFF 120
Query: 111 TTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
LG L + D N DG ++ E+FV
Sbjct: 121 GMLG--LDKTMAPASFDAIDTNNDGLLSLEEFVIAG 154
Score = 52.4 bits (126), Expect = 2e-09
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
+ F + D I E G LGL T A ID N G
Sbjct: 86 PEAKSVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKTMAP--ASFDAIDTNNDG 143
Query: 63 TIDFPEFLTVM 73
+ EF+
Sbjct: 144 LLSLEEFVIAG 154
Score = 46.3 bits (110), Expect = 3e-07
Identities = 10/76 (13%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGER--LSEDEVNEMIQE---------ADIN 132
+++K F D K G I + + + + + ++ +
Sbjct: 6 QKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVA 65
Query: 133 GDGRINYEDFVTLMTS 148
G I+ F+ M
Sbjct: 66 GGKGIDETTFINSMKE 81
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 123 bits (311), Expect = 9e-38
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 45 TEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICAD 104
++ I GT D+ F ++ K + ++K+ F++ DK + G+I +
Sbjct: 7 KADDINKAISAFKDP--GTFDYKRFFHLVGLKG---KTDAQVKEVFEILDKDQSGFIEEE 61
Query: 105 ELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
EL+ V+ G L++ E ++ D + DG+I ++F ++
Sbjct: 62 ELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADEFAKMVAQ 108
Score = 56.8 bits (138), Expect = 1e-11
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 12 DFKEAFSFFNRQGDGRIPIHELGTVMRFL---GLTPTEAELLDLIREIDVNQRGTIDFPE 68
KE F ++ G I EL V++ G + E L+ D + G I E
Sbjct: 42 QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGADE 101
Query: 69 FLTVMAR 75
F ++A+
Sbjct: 102 FAKMVAQ 108
Score = 33.7 bits (78), Expect = 0.005
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 113 LGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
+ + L D++N+ I G +Y+ F L+
Sbjct: 2 MTKVLKADDINKAISAFK--DPGTFDYKRFFHLVG 34
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 127 bits (321), Expect = 2e-37
Identities = 30/172 (17%), Positives = 62/172 (36%), Gaps = 28/172 (16%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG--LTPTEAELLDLIRE----- 55
F + + F+ +G I EL R + L P + + +++
Sbjct: 3 SAFANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSF 62
Query: 56 ---IDVNQRGTIDFPEFLTVMA----------RKLNTPDSTEEIKQAFQVFDKHKQGYIC 102
D G + E ++ R+ D++ E + ++ +D GYI
Sbjct: 63 MSAYDATFDGRLQIEELANMILPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYIS 122
Query: 103 ADELRHVMTTLG--------ERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
A EL++ + L ++ + M++ D N DGR++ D ++
Sbjct: 123 AAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLNDLARIL 174
Score = 103 bits (258), Expect = 5e-28
Identities = 23/168 (13%), Positives = 59/168 (35%), Gaps = 27/168 (16%)
Query: 7 EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP--------TEAELLDLIREIDV 58
+ +F + + ++ G I EL ++ L L + +++ D
Sbjct: 100 LDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDK 159
Query: 59 NQRGTIDFPEFLTVMARKLN-----------TPDSTEEIKQAFQVFDKHKQGYICADELR 107
N+ G +D + ++A + N + + ++ F +D + G + E+
Sbjct: 160 NKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGALEGPEVD 219
Query: 108 HVMTTLGERLS--------EDEVNEMIQEADINGDGRINYEDFVTLMT 147
+ + E + + ++ D+N DG+I + +
Sbjct: 220 GFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALCLG 267
Score = 55.8 bits (134), Expect = 2e-10
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE----------VNEMIQE 128
Q +Q FD GYI EL + ++L + +
Sbjct: 6 ANLDAAGFLQIWQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSA 65
Query: 129 ADINGDGRINYEDFVTLMTS 148
D DGR+ E+ ++
Sbjct: 66 YDATFDGRLQIEELANMILP 85
Score = 46.6 bits (110), Expect = 4e-07
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG----LTPTEAELLD----LIREID 57
E+ DF++ F+ ++ G + E+ ++ + + + +L L+ D
Sbjct: 191 QVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCD 250
Query: 58 VNQRGTIDFPEFLTVMARKLN 78
+N+ G I E + K
Sbjct: 251 MNKDGKIQKSELALCLGLKHK 271
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 122 bits (309), Expect = 2e-37
Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 45 TEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICAD 104
+A++ + + EF + S +++K+AF V D+ K G+I D
Sbjct: 7 KDADVAAALAACSAA--DSFKHKEFFAKVGLA---SKSLDDVKKAFYVIDQDKSGFIEED 61
Query: 105 ELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
EL+ + L++ E + + D +GDG I ++F ++ +
Sbjct: 62 ELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVDEFAAMIKA 108
Score = 55.6 bits (135), Expect = 3e-11
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP---TEAELLDLIREIDVNQR 61
L + ++D K+AF ++ G I EL ++ + T+AE + + D +
Sbjct: 35 LASKSLDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGD 94
Query: 62 GTIDFPEFLTVM 73
G I EF ++
Sbjct: 95 GMIGVDEFAAMI 106
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 120 bits (303), Expect = 9e-37
Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVN 123
E L + DS EEI++AF+V DK GYI A ELRHVMT LGE+L+++EV+
Sbjct: 10 GSSGENL-YFQSLMKDTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVD 68
Query: 124 EMIQEADINGDGRINYEDFVTLMTS 148
EMI+EADI+GDG++NYE+FV +MT+
Sbjct: 69 EMIREADIDGDGQVNYEEFVQMMTA 93
Score = 74.2 bits (183), Expect = 1e-18
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
M D +EE + +EAF ++ G+G I EL VM LG T+ E+ ++IRE D++
Sbjct: 22 MKDTDSEE---EIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDG 78
Query: 61 RGTIDFPEFLTVMARK 76
G +++ EF+ +M K
Sbjct: 79 DGQVNYEEFVQMMTAK 94
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 123 bits (310), Expect = 1e-36
Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 26/170 (15%)
Query: 2 ADQLTEEQINDFKEAF-SFFNRQGDGRIPIHELGTVMRFLGL-------TPTEAELLD-- 51
A QL++ Q N F +F++ DG I + ++ + E
Sbjct: 3 AHQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATL 62
Query: 52 ------LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQA--------FQVFDKHK 97
L + D N+ + E+L + A + + + E + + F V D
Sbjct: 63 KLIWDGLRKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSG 122
Query: 98 QGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
I E V + G + + + + G + E F L T
Sbjct: 123 DNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTREIFARLWT 170
Score = 55.2 bits (133), Expect = 2e-10
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 2/82 (2%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
+ L E F + GD I HE TV G+ ++ + + +
Sbjct: 100 GESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCD--AAFDTLSDGGK 157
Query: 62 GTIDFPEFLTVMARKLNTPDST 83
+ F + + D
Sbjct: 158 TMVTREIFARLWTEYFVSNDRG 179
Score = 28.3 bits (63), Expect = 0.84
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 115 ERLSEDEVNEMIQE----ADINGDGRINYEDFVTLMTS 148
+LS+ + N++++ D N DG I ++DF +
Sbjct: 4 HQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKK 41
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 123 bits (310), Expect = 2e-36
Identities = 32/162 (19%), Positives = 65/162 (40%), Gaps = 24/162 (14%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+ QI F+ ++ +G + + + L + P + I +
Sbjct: 23 FSHSQITRLYSRFTSLDKGENGTLSREDFQR-IPELAINPLGDRI---INAFFSEGEDQV 78
Query: 65 DFPEFLTVMARKLNTPDST---------------EEIKQAFQVFDKHKQGYICADELRHV 109
+F F+ +A D+ ++ AF+++D K I DEL V
Sbjct: 79 NFRGFMRTLAHFRPIEDNEKSKDVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQV 138
Query: 110 MT-TLGERLSEDE----VNEMIQEADINGDGRINYEDFVTLM 146
+ +G +S+++ + IQEAD +GD I++ +FV ++
Sbjct: 139 LRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVL 180
Score = 43.6 bits (103), Expect = 4e-06
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR-FLGLTPTEAELLDL----IREI 56
+ + N AF ++ D +I EL V+R +G+ ++ +L + I+E
Sbjct: 104 GPEPLNSRSNKLHFAFRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEA 163
Query: 57 DVNQRGTIDFPEFLTVMAR 75
D + I F EF+ V+ +
Sbjct: 164 DQDGDSAISFTEFVKVLEK 182
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 122 bits (309), Expect = 3e-36
Identities = 23/145 (15%), Positives = 52/145 (35%), Gaps = 8/145 (5%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
+ + +Q + F +R G + I+EL G+ + L ++R D +
Sbjct: 42 LNTIPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFN 101
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE 121
G I F EF+ + E F + + + G + E+ + LG ++
Sbjct: 102 GHISFYEFMAMYK-------FMELAYNLFVMNARARSGTLEPHEILPALQQLGFYIN-QR 153
Query: 122 VNEMIQEADINGDGRINYEDFVTLM 146
+ ++ G + ++ +
Sbjct: 154 TSLLLHRLFARGMAFCDLNCWIAIC 178
Score = 51.7 bits (124), Expect = 6e-09
Identities = 14/139 (10%), Positives = 32/139 (23%), Gaps = 37/139 (26%)
Query: 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEF 69
+ F R G + HE+ ++ LG + L+ + D +
Sbjct: 116 MELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQ-RTSLLLHRLFARGMAFCDLNCW 174
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA 129
+ + A Q +
Sbjct: 175 IAICAF----------AAQTRSAYQMIFMNP--------------------------YYG 198
Query: 130 DINGDGRINYEDFVTLMTS 148
+ + + F+ ++TS
Sbjct: 199 PMKPFNPMEFGKFLDVVTS 217
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 118 bits (298), Expect = 9e-36
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 40 LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQG 99
+A++ ++ + + ++ F + S ++IK+AF V D+ K G
Sbjct: 3 FSGILADADVAAALKACEAA--DSFNYKAFFAKVGLT---AKSADDIKKAFFVIDQDKSG 57
Query: 100 YICADELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+I DEL+ + L++ E ++ D +GDG I +++ L+ +
Sbjct: 58 FIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAALVKA 109
Score = 55.3 bits (134), Expect = 4e-11
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGL---TPTEAELLDLIREIDVNQR 61
LT + +D K+AF ++ G I EL ++ T+AE ++ D +
Sbjct: 36 LTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGD 95
Query: 62 GTIDFPEFLTVM 73
G I E+ ++
Sbjct: 96 GAIGVDEWAALV 107
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 121 bits (305), Expect = 1e-35
Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 19/163 (11%)
Query: 4 QLTEEQINDFKEAFS-FFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
+ +E + F G + +HE + + + R D N
Sbjct: 15 AVGAADAAQLQEWYKKFLEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDN 74
Query: 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS---- 118
TIDF E++ + L ++K F+++DK + G I EL ++ ++ +
Sbjct: 75 TIDFLEYVAALNLVLRG-TLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSV 133
Query: 119 -------------EDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E+ V+ + D NGDG+++ +FV
Sbjct: 134 EVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 124 bits (313), Expect = 1e-34
Identities = 36/163 (22%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 1 MADQLTE-EQINDFKEAFSFFNRQGDGRIPIHELGTVMR--------------FLGLTPT 45
MA +LT ++ E F + DG + EL +
Sbjct: 320 MASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTI 379
Query: 46 EAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADE 105
E ++ L+ +D++ G+I++ EF+ S E +++AF++FDK G I E
Sbjct: 380 EDQIDSLMPLLDMDGSGSIEYSEFIASAID-RTILLSRERMERAFKMFDKDGSGKISTKE 438
Query: 106 LRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
L + + + +E+ +I++ D N DG +++ +FV ++ +
Sbjct: 439 LFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFNEFVEMLQN 481
Score = 66.2 bits (162), Expect = 1e-13
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL--------------GE 115
L MA KL T D T+++ + F+ D + G + DEL
Sbjct: 317 LLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEG 376
Query: 116 RLSEDEVNEMIQEADINGDGRINYEDFVT 144
ED+++ ++ D++G G I Y +F+
Sbjct: 377 STIEDQIDSLMPLLDMDGSGSIEYSEFIA 405
Score = 28.1 bits (63), Expect = 1.1
Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 107 RHVMTTLGERLSEDE----VNEMIQEADINGDGRINYEDFVTLMTS 148
+ + + +L+ + + E+ ++ D N DG ++ ++ V
Sbjct: 314 QAALLYMASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHE 359
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 121 bits (306), Expect = 1e-33
Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 12/155 (7%)
Query: 1 MADQL-TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG--------LTPTEAELLD 51
MA +L ++E+ + + F ++ GDG++ EL L L E+E+
Sbjct: 335 MASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDA 394
Query: 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT 111
++ D ++ G ID+ EF+TV + S ++++ AFQ FD+ G I DEL V
Sbjct: 395 ILGAADFDRNGYIDYSEFVTVAMD-RKSLLSKDKLESAFQKFDQDGNGKISVDELASVFG 453
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+ L EMI D N DG +++E+F ++
Sbjct: 454 --LDHLESKTWKEMISGIDSNNDGDVDFEEFCKMI 486
Score = 67.4 bits (165), Expect = 3e-14
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG--------ERLSEDE 121
L MA KL + + T+E+ F+ DK+ G + EL + L E E
Sbjct: 332 LLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESE 391
Query: 122 VNEMIQEADINGDGRINYEDFVT 144
V+ ++ AD + +G I+Y +FVT
Sbjct: 392 VDAILGAADFDRNGYIDYSEFVT 414
Score = 28.1 bits (63), Expect = 1.2
Identities = 8/45 (17%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 107 RHVMTTLGERL-SEDEVN---EMIQEADINGDGRINYEDFVTLMT 147
+ + + +L S++E ++ + D NGDG+++ ++ + +
Sbjct: 329 QAALLYMASKLTSQEETKELTDIFRHIDKNGDGQLDRQELIDGYS 373
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 121 bits (305), Expect = 2e-33
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 15/158 (9%)
Query: 1 MADQL-TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR-----------FLGLTPTEAE 48
M +L ++++ + F ++ GDG++ EL + L + E E
Sbjct: 324 MGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHE 383
Query: 49 LLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRH 108
+ ++ +D ++ G I++ EF+TV T S E +++AF++FD G I + EL
Sbjct: 384 VDQVLDAVDFDKNGYIEYSEFVTVAMD-RKTLLSRERLERAFRMFDSDNSGKISSTELAT 442
Query: 109 VMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+ + + ++ E D N DG +++++F ++
Sbjct: 443 IFG--VSDVDSETWKSVLSEVDKNNDGEVDFDEFQQML 478
Score = 68.2 bits (167), Expect = 2e-14
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT-----------TLGERLS 118
L M KL + D T+E+ F DK+ G + EL L
Sbjct: 321 LLYMGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAV 380
Query: 119 EDEVNEMIQEADINGDGRINYEDFVT 144
E EV++++ D + +G I Y +FVT
Sbjct: 381 EHEVDQVLDAVDFDKNGYIEYSEFVT 406
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 115 bits (289), Expect = 4e-33
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQ 60
+ ++ + + F G +HE T++ GL + +D + D N+
Sbjct: 13 QKAVPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNK 70
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL------G 114
G +DF EF+ + + +++K F+++D G I +EL + +
Sbjct: 71 DGFVDFLEFIAAVNLIMQE-KMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQ 129
Query: 115 ERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E+ +N + + DIN DG + E+F+ M
Sbjct: 130 TLSPEEFINLVFHKIDINNDGELTLEEFINGMAK 163
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 119 bits (300), Expect = 1e-32
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 12/155 (7%)
Query: 1 MADQLTE-EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLG--------LTPTEAELLD 51
+ +LT E+ + + F ++ GDG++ EL L L E E+ +
Sbjct: 344 IGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDN 403
Query: 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT 111
+++E+D ++ G I++ EF++V S E +++AF +FD K G I +EL ++
Sbjct: 404 ILKEVDFDKNGYIEYSEFISVCMD-KQILFSEERLRRAFNLFDTDKSGKITKEELANLFG 462
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+SE N+++ EAD N D I++++FV++M
Sbjct: 463 LTS--ISEKTWNDVLGEADQNKDNMIDFDEFVSMM 495
Score = 70.1 bits (172), Expect = 4e-15
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGE--------RLSEDE 121
+ + KL T + +E+ F+ DK+ G + EL L + E+E
Sbjct: 341 ILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEE 400
Query: 122 VNEMIQEADINGDGRINYEDFVT 144
V+ +++E D + +G I Y +F++
Sbjct: 401 VDNILKEVDFDKNGYIEYSEFIS 423
Score = 27.7 bits (62), Expect = 1.6
Identities = 8/46 (17%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 107 RHVMTTLGERLSEDE----VNEMIQEADINGDGRINYEDFVTLMTS 148
+ + +G +L+ E + ++ ++ D NGDG+++ ++ +
Sbjct: 338 QAAILFIGSKLTTLEERKELTDIFKKLDKNGDGQLDKKELIEGYNV 383
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 110 bits (278), Expect = 1e-32
Identities = 21/115 (18%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
Query: 37 MRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKH 96
M + + ++ + + ++ F + + + ++IK+ F + D+
Sbjct: 1 MAITDIL-SAKDIESALSSCQAA--DSFNYKSFFSTVGLS---SKTPDQIKKVFGILDQD 54
Query: 97 KQGYICADELRHVMTTLG---ERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
K G+I +EL+ + L+ E + D +GDG+I E+F +L+ +
Sbjct: 55 KSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVEEFQSLVKA 109
Score = 55.3 bits (134), Expect = 4e-11
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP---TEAELLDLIREIDVNQR 61
L+ + + K+ F ++ G I EL ++ + T AE + D +
Sbjct: 36 LSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGD 95
Query: 62 GTIDFPEFLTVM 73
G I EF +++
Sbjct: 96 GKIGVEEFQSLV 107
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 113 bits (284), Expect = 1e-32
Identities = 32/149 (21%), Positives = 58/149 (38%), Gaps = 15/149 (10%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-----LIREIDV 58
+ + F+ DG+I EL + G+ ++ +D
Sbjct: 26 AFPGQTQDPLYGYFAAV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDR 84
Query: 59 NQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS 118
+ GT+ F EF + A +Q F FD + G + EL+ +TT+G RLS
Sbjct: 85 DMSGTMGFNEFKELWAVL-------NGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLS 137
Query: 119 EDEVNEMIQEADINGDGRINYEDFVTLMT 147
VN + + +G+I ++D++
Sbjct: 138 PQAVNSIAKRYS--TNGKITFDDYIACCV 164
Score = 62.5 bits (152), Expect = 4e-13
Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 9/105 (8%)
Query: 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPE 68
+N +++ F F+ G + EL + +G + + + + N G I F +
Sbjct: 101 VLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFDD 158
Query: 69 FLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113
++ + + +F+ D +QG + + +
Sbjct: 159 YIACCVKL-------RALTDSFRRRDTAQQGVVNFPYDDFIQCVM 196
Score = 57.9 bits (140), Expect = 3e-11
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 60 QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG----- 114
G +P P T++ + + G I ADEL+ +T G
Sbjct: 8 GAGGGYYPGGYGGAPGGPAFPGQTQDPLYGYFAAVAGQDGQIDADELQRCLTQSGIAGGY 67
Query: 115 ERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+ + + M+ D + G + + +F L
Sbjct: 68 KPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAV 101
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 108 bits (272), Expect = 4e-32
Identities = 29/82 (35%), Positives = 46/82 (56%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
LT E+ ++KEAF F++ D ++ ELGTVMR LG PT+ ++ +++++ D +
Sbjct: 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN 63
Query: 61 RGTIDFPEFLTVMARKLNTPDS 82
G D FLT+M DS
Sbjct: 64 SGKFDQETFLTIMLEYGQEVDS 85
Score = 87.3 bits (217), Expect = 1e-23
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 74 ARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADING 133
+K+ T + +E K+AFQ+FDK + A+EL VM LG ++ +++E++++ D +
Sbjct: 4 QKKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDN 63
Query: 134 DGRINYEDFVTLMT 147
G+ + E F+T+M
Sbjct: 64 SGKFDQETFLTIML 77
Score = 29.9 bits (68), Expect = 0.086
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 110 MTTLGERLSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
M+ + L+ +E E +EA D + D ++ E+ T+M +
Sbjct: 1 MSEQKKVLTAEEQQE-YKEAFQLFDKDNDNKLTAEELGTVMRA 42
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 108 bits (273), Expect = 5e-32
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 40 LGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQG 99
L + +++ +R+ + +F + S+ ++K+ F++ D + G
Sbjct: 2 LTDILSPSDIAAALRDCQAP--DSFSPKKFFQISGMS---KKSSSQLKEIFRILDNDQSG 56
Query: 100 YICADELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+I DEL++ + L+ E + AD +GDG+I E+F ++ S
Sbjct: 57 FIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAEEFQEMVQS 108
Score = 65.4 bits (160), Expect = 6e-15
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP---TEAELLDLIREIDVNQR 61
++++ + KE F + G I EL ++ T +E + D +
Sbjct: 35 MSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGD 94
Query: 62 GTIDFPEFLTVM 73
G I EF ++
Sbjct: 95 GKIGAEEFQEMV 106
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 108 bits (273), Expect = 6e-32
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 44 PTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICA 103
+ ++ I + D +F ++ K S +++K+ F + DK K G+I
Sbjct: 6 LSAEDIKKAIGAFTAA--DSFDHKKFFQMVGLKK---KSADDVKKVFHILDKDKSGFIEE 60
Query: 104 DELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
DEL ++ LS E ++ D +GDG+I E+F TL+
Sbjct: 61 DELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLVAE 108
Score = 63.1 bits (154), Expect = 5e-14
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP---TEAELLDLIREIDVNQR 61
L ++ +D K+ F ++ G I ELG++++ + E L+ D +
Sbjct: 35 LKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGD 94
Query: 62 GTIDFPEFLTVMAR 75
G I EF T++A
Sbjct: 95 GKIGVEEFSTLVAE 108
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 110 bits (276), Expect = 9e-32
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 17 FSFFNR--QGDGRIPIHELGTVMRFLGLTPTEAELLD-----LIREIDVNQRGTIDFPEF 69
+++F+ DG + EL + G+ T + +I +D + G + F F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA 129
+ A K+ F D+ G + ELR + +G RLS + +++
Sbjct: 63 KELWAAL-------NAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115
Query: 130 DINGDGRINYEDFVTLM 146
+GRI ++D+V
Sbjct: 116 S--KNGRIFFDDYVACC 130
Score = 62.8 bits (153), Expect = 2e-13
Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFP 67
+N +KE F ++ G G + HEL + +G + L +++ N G I F
Sbjct: 67 AALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFD 124
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113
+++ + + F+ D +QG + T+
Sbjct: 125 DYVACCVKL-------RALTDFFRKRDHLQQGSANFIYDDFLQGTM 163
Score = 51.2 bits (123), Expect = 4e-09
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 90 FQVFDKHKQ--GYICADELRHVMTTLG-----ERLSEDEVNEMIQEADINGDGRINYEDF 142
+ F G + A+EL+ +T G S + MI D + G++ + F
Sbjct: 3 YTYFSAVAGQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFNAF 62
Query: 143 VTLMTS 148
L +
Sbjct: 63 KELWAA 68
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 110 bits (276), Expect = 2e-31
Identities = 30/154 (19%), Positives = 72/154 (46%), Gaps = 11/154 (7%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVN 59
++L+ + + + + F G++ ++E L+P+ + ++ + D N
Sbjct: 7 AVEELSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFN 64
Query: 60 QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG----- 114
+ G IDF E++ ++ L ++++ F+++D G I EL +++ +
Sbjct: 65 KDGYIDFMEYVAALSLVLKG-KVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRC 123
Query: 115 --ERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+E+ N + + DINGDG ++ E+F+ +
Sbjct: 124 NEAMTAEEFTNMVFDKIDINGDGELSLEEFMEGV 157
Score = 35.9 bits (83), Expect = 0.002
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-------LIREIDVNQRGTIDF 66
+ F ++ G+G I EL +++ + E + + +ID+N G +
Sbjct: 91 RWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSL 150
Query: 67 PEFLTVMAR 75
EF+ + +
Sbjct: 151 EEFMEGVQK 159
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 105 bits (265), Expect = 6e-31
Identities = 38/78 (48%), Positives = 48/78 (61%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
L+EE I +FK AF F+ G G I ELGTVMR LG PT+ EL +I E+D +
Sbjct: 10 ARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDG 69
Query: 61 RGTIDFPEFLTVMARKLN 78
GTIDF EFL +M R++
Sbjct: 70 SGTIDFEEFLVMMVRQMK 87
Score = 93.4 bits (233), Expect = 4e-26
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADIN 132
AR + + E K AF +FD G I EL VM LG+ +++E++ +I+E D +
Sbjct: 9 EARAFLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDED 68
Query: 133 GDGRINYEDFVTLMT 147
G G I++E+F+ +M
Sbjct: 69 GSGTIDFEEFLVMMV 83
Score = 27.6 bits (62), Expect = 0.75
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 117 LSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
LSE+ + E + A D +G G I+ ++ T+M
Sbjct: 14 LSEEMIAE-FKAAFDMFDADGGGDISTKELGTVMRM 48
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 104 bits (263), Expect = 7e-31
Identities = 28/67 (41%), Positives = 46/67 (68%)
Query: 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYE 140
E+++ AF+ FD+ G+I DELR M LG+ L ++E++ MI+EAD++ DGR+NYE
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE 62
Query: 141 DFVTLMT 147
+F ++
Sbjct: 63 EFARMLA 69
Score = 79.1 bits (196), Expect = 1e-20
Identities = 25/70 (35%), Positives = 40/70 (57%)
Query: 7 EEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDF 66
+ D + AF F++ GDG I + EL M LG + EL +IRE DV+Q G +++
Sbjct: 2 RAGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
Query: 67 PEFLTVMARK 76
EF ++A++
Sbjct: 62 EEFARMLAQE 71
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 105 bits (264), Expect = 1e-30
Identities = 40/70 (57%), Positives = 58/70 (82%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
D+ EE+K+AF+VFDK + GYI A ELRHVM LGE+L+++EV +MI+EAD++GDG++N
Sbjct: 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63
Query: 139 YEDFVTLMTS 148
YE+FV +M +
Sbjct: 64 YEEFVKMMMT 73
Score = 86.1 bits (214), Expect = 3e-23
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
+ + + KEAF F++ +G I EL VM LG T+ E+ +I+E D++ G
Sbjct: 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQ 61
Query: 64 IDFPEFLTVM--ARKLNTPDSTEEIKQAF 90
+++ EF+ +M R + +++ F
Sbjct: 62 VNYEEFVKMMMTVRGGGGGNGWSRLRRKF 90
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 104 bits (262), Expect = 1e-30
Identities = 31/77 (40%), Positives = 41/77 (53%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
L+EEQ + KEAF F+ G I HEL MR LG + E+L+L+ E D G I
Sbjct: 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYI 60
Query: 65 DFPEFLTVMARKLNTPD 81
F +FL +M K+ D
Sbjct: 61 GFDDFLDIMTEKIKNRD 77
Score = 88.3 bits (220), Expect = 3e-24
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
+ + +EIK+AF +FD +K G I EL+ M LG + + E+ E++ E D G+G I
Sbjct: 2 SEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIG 61
Query: 139 YEDFVTLMT 147
++DF+ +MT
Sbjct: 62 FDDFLDIMT 70
Score = 28.2 bits (64), Expect = 0.28
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 117 LSEDEVNEMIQEA----DINGDGRINYEDFVTLMTS 148
LSE++ E I+EA D N G I+Y + M +
Sbjct: 1 LSEEQKQE-IKEAFDLFDTNKTGSIDYHELKVAMRA 35
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 104 bits (261), Expect = 2e-30
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
MA + T + I D + F F+ GDG+I ELG ++ LG T E+ ++ EID +
Sbjct: 1 MAAEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDG 59
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAF 90
G I F EF +++ + F
Sbjct: 60 DGFISFDEFTDFARAN---RGLVKDVSKIF 86
Score = 89.6 bits (223), Expect = 1e-24
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADIN 132
MA + TP + ++ F+ FD + G I + EL + TLG ++ DEV M+ E D +
Sbjct: 1 MAAED-TPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTD 58
Query: 133 GDGRINYEDFVTLMTS 148
GDG I++++F +
Sbjct: 59 GDGFISFDEFTDFARA 74
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 105 bits (262), Expect = 1e-29
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 26/166 (15%)
Query: 5 LTEEQINDFKEAF-SFFNRQGDGRIPIHELGTVMRFLGL-------TPTEAELLDLIREI 56
L + Q K F F + DG I ++ +M + + +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 57 --------DVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQA--------FQVFDKHKQGY 100
D+N+ + + E+L + + + T S ++ F+ D G
Sbjct: 62 WRDLKGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGI 121
Query: 101 ICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+ +E ++ L +V + G + + L
Sbjct: 122 VDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLNRYKELY 165
Score = 53.4 bits (128), Expect = 9e-10
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
L N F + GDG + + E + L + + I +
Sbjct: 97 ADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVP--AVYNVITDGGKV 154
Query: 63 TIDFPEFLTVMARKLNTPDS 82
T D + + R L +P +
Sbjct: 155 TFDLNRYKELYYRLLTSPAA 174
Score = 39.9 bits (93), Expect = 7e-05
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 79 TPDSTEEIKQAFQVF-DKHKQGYICADELRHVMTTLGE---------------RLSEDEV 122
++IK F F D + G I ++ +MT E EDE
Sbjct: 3 NDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEW 62
Query: 123 NEMIQEADINGDGRINYEDFVTLMT 147
++ ADIN D +++E+++ +
Sbjct: 63 RDLKGRADINKDDVVSWEEYLAMWE 87
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 105 bits (263), Expect = 3e-29
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 5 LTEEQINDFKEAFSFF--NRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
T E++ E F + DG I E + + DV + G
Sbjct: 31 FTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRR-NLFADRIFDVFDVKRNG 89
Query: 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT--------TLG 114
I+F EF+ + + E++K AF+++D + G+I +EL+ ++ L
Sbjct: 90 VIEFGEFVRSLGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLS 149
Query: 115 ERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
E + E V++ +AD DG+I+ +++ +
Sbjct: 150 EDMIEVMVDKAFVQADRKNDGKIDIDEWKDFV 181
Score = 39.0 bits (91), Expect = 2e-04
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 8/86 (9%)
Query: 67 PEFLTVMARKLNTPDSTEEIKQAFQVF-----DKHKQGYICADELRHVMTTLGERLSEDE 121
E ++A TP + EE++ +++F G I +E + +
Sbjct: 19 YEDPELLAS--VTPFTVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALF-RNRNRRNLF 75
Query: 122 VNEMIQEADINGDGRINYEDFVTLMT 147
+ + D+ +G I + +FV +
Sbjct: 76 ADRIFDVFDVKRNGVIEFGEFVRSLG 101
Score = 37.4 bits (87), Expect = 6e-04
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFLG------LTPTEAELL--DLIREIDVNQRGTID 65
K AF ++ + G I EL ++ L L+ E++ + D G ID
Sbjct: 114 KFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKID 173
Query: 66 FPEFLTVMAR 75
E+ ++
Sbjct: 174 IDEWKDFVSL 183
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 100 bits (252), Expect = 7e-29
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 49 LLDLIREIDVNQR-------GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYI 101
+ D++ D+ T + +F + S ++K F+ D + GY+
Sbjct: 2 ITDILSAEDIAAALQECQDPDTFEPQKFFQTSGL---SKMSASQVKDIFRFIDNDQSGYL 58
Query: 102 CADELRHVMTTL---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
DEL++ + L+E E ++ AD +GDG+I ++F ++ S
Sbjct: 59 DGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEMVHS 108
Score = 66.9 bits (164), Expect = 2e-15
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP---TEAELLDLIREIDVNQR 61
L++ + K+ F F + G + EL ++ TE+E L+ D +
Sbjct: 35 LSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGD 94
Query: 62 GTIDFPEFLTVM 73
G I EF ++
Sbjct: 95 GKIGADEFQEMV 106
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 99 bits (250), Expect = 1e-28
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
MA++L+EE+I KE F + G I EL ++ +G E+E+ DL+ D+++
Sbjct: 13 MAERLSEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDK 72
Query: 61 RGTIDFPEFLTVM 73
GTID+ EF+
Sbjct: 73 SGTIDYGEFIAAT 85
Score = 97.6 bits (244), Expect = 9e-28
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE 121
G ID + MA +L + + +K+ F++ D G I DEL+ + +G L E E
Sbjct: 4 GHIDDDDK--HMAERL-SEEEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESE 60
Query: 122 VNEMIQEADINGDGRINYEDFVTLM 146
+ +++ ADI+ G I+Y +F+
Sbjct: 61 IKDLMDAADIDKSGTIDYGEFIAAT 85
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 100 bits (251), Expect = 3e-28
Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
++ E++ FKE + F+ +G I + L +M LG+ T E+ +I E+
Sbjct: 42 EENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSD 101
Query: 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQG 99
TI + +F+ +M K + + +F+
Sbjct: 102 TISYRDFVNMMLGKR------SAVLKLVMMFEGKANE 132
Score = 84.5 bits (209), Expect = 6e-22
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 7/103 (6%)
Query: 45 TEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICAD 104
+A + EI+ + + N P+ K+ + FD + +G I
Sbjct: 18 LKARQERRLAEINREFLCDQKYSDEE-------NLPEKLTAFKEKYMEFDLNNEGEIDLM 70
Query: 105 ELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
L+ +M LG + E+ +MI E I+Y DFV +M
Sbjct: 71 SLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYRDFVNMML 113
Score = 24.8 bits (54), Expect = 9.6
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 104 DELRHVMTTLGERLSEDEVNEMIQ---EADINGDGRINYEDFVTLMTS 148
E E +++ + E D+N +G I+ +M
Sbjct: 31 REFLCDQKYSDEENLPEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEK 78
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 100 bits (252), Expect = 4e-28
Identities = 31/142 (21%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAEL-----LDLIREIDVNQRGTI 64
++ F+ DG+I EL + G+ ++ +D + GT+
Sbjct: 1 MDPLYGYFASV-AGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 59
Query: 65 DFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124
F EF + A +Q F FD + G + EL+ +TT+G RL+ VN
Sbjct: 60 GFNEFKELWAVL-------NGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNS 112
Query: 125 MIQEADINGDGRINYEDFVTLM 146
+ + G+I ++D++
Sbjct: 113 IAKRYS--TSGKITFDDYIACC 132
Score = 60.9 bits (148), Expect = 1e-12
Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPE 68
+N +++ F F+ G + EL + +G + + + + G I F +
Sbjct: 70 VLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTS--GKITFDD 127
Query: 69 FLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADE 105
++ + + +F+ D +QG +
Sbjct: 128 YIACCVKL-------RALTDSFRRRDSAQQGMVNFSY 157
Score = 50.5 bits (121), Expect = 8e-09
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 84 EEIKQAF-QVFDKHKQGYICADELRHVMTTLG-----ERLSEDEVNEMIQEADINGDGRI 137
+ + F V + G I ADEL+ +T G + + + M+ D + G +
Sbjct: 2 DPLYGYFASVAGQD--GQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTM 59
Query: 138 NYEDFVTLMT 147
+ +F L
Sbjct: 60 GFNEFKELWA 69
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 99.0 bits (247), Expect = 5e-28
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
+D+ ++ FKE + F+ G+G I I L ++ LG+ T EL LI E+
Sbjct: 23 SDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSG 82
Query: 62 GTIDFPEFLTVMARK 76
T +P+FL +M K
Sbjct: 83 ETFSYPDFLRMMLGK 97
Score = 87.4 bits (217), Expect = 2e-23
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 54 REIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113
+D + +D P++ + + P E K+ + FD + G I L+ ++ L
Sbjct: 6 ERLDEINKQFLDDPKY----SSDEDLPSKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKL 61
Query: 114 GERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
G + E+ ++I E +Y DF+ +M
Sbjct: 62 GVPKTHLELKKLIGEVSSGSGETFSYPDFLRMML 95
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8 PDB:
1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 100 bits (250), Expect = 8e-28
Identities = 23/147 (15%), Positives = 58/147 (39%), Gaps = 17/147 (11%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD--------LIREIDVN 59
E++ F+ F+ D + EL ++ + + + ++ +D +
Sbjct: 1 EEVRQFRRLFAQLAGD-DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 60 QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSE 119
G + F EF + ++ + ++ FD + G I + EL G L+E
Sbjct: 60 TTGKLGFEEFKYLWNNI-------KKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE 112
Query: 120 DEVNEMIQEADINGDGRINYEDFVTLM 146
+ +I + G +++++F++ +
Sbjct: 113 HLYSMII-RRYSDEGGNMDFDNFISCL 138
Score = 62.8 bits (153), Expect = 2e-13
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 8/106 (7%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFP 67
I ++ + F+ G I EL G E L +I ++ G +DF
Sbjct: 74 NNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNE-HLYSMIIRRYSDEGGNMDFD 132
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL 113
F++ + R + + +AF+ DK G I + + T+
Sbjct: 133 NFISCLVRL-------DAMFRAFKSLDKDGTGQIQVNIQEWLQLTM 171
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 97.2 bits (243), Expect = 8e-28
Identities = 28/71 (39%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGER-LSEDEVNEMIQEADINGDGRI 137
D EEI +AF+VFD + G I DE + +M +GE L++ EV E ++EAD +G+G I
Sbjct: 3 RQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVI 62
Query: 138 NYEDFVTLMTS 148
+ +F+ L+
Sbjct: 63 DIPEFMDLIKK 73
Score = 78.7 bits (195), Expect = 2e-20
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP-TEAELLDLIREIDVNQRGT 63
+ ++ + AF F+ GDG I E +M+ +G P T+AE+ + ++E D + G
Sbjct: 2 VRQDDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGV 61
Query: 64 IDFPEFLTVMARKLNTPDST 83
ID PEF+ ++ + N +
Sbjct: 62 IDIPEFMDLIKKSKNALKES 81
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: a.39.1.5
Length = 67
Score = 95.2 bits (238), Expect = 4e-27
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 85 EIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVT 144
K+ F+ FDK+K G + DE R V +++++ + +E D++G+G +N ++F +
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Query: 145 LMTS 148
+
Sbjct: 62 CIEK 65
Score = 79.1 bits (196), Expect = 1e-20
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 12 DFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLT 71
K F F++ DG++ + E V T+ +++ EIDV+ G ++ EF +
Sbjct: 2 SAKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTS 61
Query: 72 VMARKL 77
+ + L
Sbjct: 62 CIEKML 67
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 93.1 bits (232), Expect = 5e-26
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS------EDEVNEMIQEADINGDGRI 137
E++ AF+ D + GY+ A EL+ M TL + ++ ++I+ AD N DG+I
Sbjct: 7 AELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKI 66
Query: 138 NYEDFVTLMT 147
+ E+F+
Sbjct: 67 SKEEFLNANA 76
Score = 73.4 bits (181), Expect = 2e-18
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTP------TEAELLDLIREIDV 58
+ + + + AF + GDG + EL T M L + LI+ D
Sbjct: 1 MACKVKAELEAAFKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADK 60
Query: 59 NQRGTIDFPEFLTVMARKL 77
N G I EFL A L
Sbjct: 61 NSDGKISKEEFLNANAELL 79
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 95.7 bits (238), Expect = 2e-25
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 5 LTEEQINDFKEAFSFF--NRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRG 62
+ +I E F DG I E + + + D G
Sbjct: 42 FSVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTKHNG 100
Query: 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL----GERLS 118
+ F EF ++ ++I +FQ++D +QG+I E++ ++ G L
Sbjct: 101 ILGFEEFARALSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLK 160
Query: 119 EDE----VNEMIQEADINGDGRINYEDFVTLM 146
+ +++ +EAD DG+I+ E++ +L+
Sbjct: 161 DTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192
Score = 36.7 bits (85), Expect = 0.001
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 82 STEEIKQAFQVF-----DKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGR 136
S EI+ +++F G I +E + + ++ S + + D +G
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESL-FADRVFDLFDTKHNGI 101
Query: 137 INYEDFVTLMT 147
+ +E+F ++
Sbjct: 102 LGFEEFARALS 112
Score = 36.7 bits (85), Expect = 0.001
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFL------GLTPTEAELL--DLIREIDVNQRGTID 65
+F ++ + G I E+ ++ L T E + E D G ID
Sbjct: 125 HFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKID 184
Query: 66 FPEFLTVMAR 75
E+ +++ R
Sbjct: 185 KEEWRSLVLR 194
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 91.1 bits (227), Expect = 3e-25
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFV 143
+++++ F+ FD + G I EL + TLG S DEV M+ E D +GDG I++ +F+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 144 TLMTS 148
+ +
Sbjct: 62 SFCNA 66
Score = 78.4 bits (194), Expect = 2e-20
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 11 NDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFL 70
+D + F F+ GDG+I + EL +R LG + E+ ++ EID + G IDF EF+
Sbjct: 3 DDMERIFKRFDTNGDGKISLSELTDALRTLGS-TSADEVQRMMAEIDTDGDGFIDFNEFI 61
Query: 71 TVMARKLNTPDSTEEIKQAF 90
+ P +++ + F
Sbjct: 62 SFCNAN---PGLMKDVAKVF 78
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 94.2 bits (234), Expect = 5e-25
Identities = 31/159 (19%), Positives = 65/159 (40%), Gaps = 18/159 (11%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTV-------MRFLGLTPTEAELLDLIREID 57
LT+++I F Q + V + L P + + +
Sbjct: 45 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSP 104
Query: 58 VNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL---- 113
++ F +FL +++ +T + AF++FD G + ++L ++ L
Sbjct: 105 AK--DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 162
Query: 114 -GERLSEDE----VNEMIQEADINGDGRINYEDFVTLMT 147
RLS E ++ +++E+DI+ DG IN +F +++
Sbjct: 163 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVIS 201
Score = 38.3 bits (89), Expect = 3e-04
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 13 FKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD---------LIREIDVNQRGT 63
AF F+ DG + +L ++ L + L ++ E D+++ GT
Sbjct: 131 SHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGT 190
Query: 64 IDFPEFLTVMAR 75
I+ EF V++R
Sbjct: 191 INLSEFQHVISR 202
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 91.1 bits (226), Expect = 5e-24
Identities = 33/157 (21%), Positives = 65/157 (41%), Gaps = 16/157 (10%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
TE +I ++ + F G + + E + ++ + + R D N GT
Sbjct: 22 FTEHEIQEWYKGF--LRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGT 79
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG--------- 114
IDF EF+ ++ +++K AF ++D GYI E+ ++ +
Sbjct: 80 IDFREFIIALSVTSRGK-LEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKM 138
Query: 115 ---ERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E E ++ ++ D N DG+++ E+F+ S
Sbjct: 139 PEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKS 175
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 88.8 bits (220), Expect = 1e-23
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Query: 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT 111
++ + +D P++ + P E K + FD + G I L+ ++
Sbjct: 20 QEERLEGINKQFLDDPKYSNDE----DLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLE 75
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
LG + E+ +I+E + +Y DF+ +M
Sbjct: 76 KLGVPKTHLELKRLIREVSSGSEETFSYSDFLRMMLG 112
Score = 85.7 bits (212), Expect = 2e-22
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
D+ ++ FK + F+ G+G I I L ++ LG+ T EL LIRE+
Sbjct: 38 SNDEDLPSKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGS 97
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQG 99
T + +FL +M K + + ++ +K +
Sbjct: 98 EETFSYSDFLRMMLGK---RSAILRMILMYEEKNKEHKR 133
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 89.1 bits (221), Expect = 2e-23
Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTV-------MRFLGLTPTEAELLDLIREID 57
LT+++I F Q + V + L P + + +
Sbjct: 14 LTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSP 73
Query: 58 VNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL---- 113
++ F +FL +++ +T + AF++FD G + ++L ++ L
Sbjct: 74 AK--DSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 131
Query: 114 -GERLSEDE----VNEMIQEADINGDGRINYEDFVTLMTS 148
RLS E ++ +++E+DI+ DG IN +F +++
Sbjct: 132 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISR 171
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 84.6 bits (210), Expect = 8e-23
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 81 DSTEEIKQAFQVFDKH--KQGYICADELRHVMTTLGERL--SEDEVNEMIQEADINGDGR 136
S EEIK AF+VF I +EL+ VM TLG L ++EMI+E D NGDG
Sbjct: 2 KSPEEIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 137 INYEDFVTLMT 147
+++E+F+ +M
Sbjct: 62 VSFEEFLVMMK 72
Score = 57.2 bits (139), Expect = 3e-12
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 12 DFKEAFSFF-NRQGD-GRIPIHELGTVMRFLG--LTPTEAELLDLIREIDVNQRGTIDFP 67
+ K AF F ++GD +I EL VM+ LG L + L ++I E+D N G + F
Sbjct: 6 EIKGAFEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
Query: 68 EFLTVMAR 75
EFL +M +
Sbjct: 66 EFLVMMKK 73
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 85.2 bits (211), Expect = 1e-22
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 84 EEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFV 143
I Q F+ FD K I +E R + + L++++ + + E +N GR+ Y DF+
Sbjct: 24 HAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFL 83
Query: 144 TLMTS 148
+ +S
Sbjct: 84 SRFSS 88
Score = 62.5 bits (152), Expect = 7e-14
Identities = 13/82 (15%), Positives = 28/82 (34%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGT 63
+ + + F F+ I E + T+ + L E+ VN +G
Sbjct: 17 KAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGR 76
Query: 64 IDFPEFLTVMARKLNTPDSTEE 85
+ +P+FL+ + +
Sbjct: 77 LKYPDFLSRFSSETAATPMATG 98
Score = 25.1 bits (55), Expect = 5.2
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 103 ADELRHVMTTLGERLSEDEVN--EMIQEADINGDGRINYEDFVTLMTS 148
A R ++ L + ++ + + D I+ E+F +
Sbjct: 5 ATADRDILARLHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNR 52
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 81.1 bits (200), Expect = 4e-20
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 16/157 (10%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
+I + + F G++ + + + + + + L D + G
Sbjct: 22 FDRREIQQWHKGF--LRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNGF 79
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT------------ 111
I F EF+TV++ E++ AF+++D + GYI DE+ ++
Sbjct: 80 IHFEEFITVLSTTSRGT-LEEKLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTL 138
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E E V ++ + D N DG I ++F
Sbjct: 139 NEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKV 175
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 78.7 bits (194), Expect = 3e-19
Identities = 29/157 (18%), Positives = 59/157 (37%), Gaps = 16/157 (10%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
++++ + + FF G + E + + + + + D ++ G
Sbjct: 22 FDKKELQQWYK--GFFKDCPSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGY 79
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT------------ 111
IDF EF+ ++ +++ AFQ++D G I DE+ ++
Sbjct: 80 IDFKEFICALSVTSRGE-LNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKL 138
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E E VN++ D N DG++ E+F
Sbjct: 139 PEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKR 175
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 74.7 bits (184), Expect = 9e-19
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
+ ++ F D ++ G + +E R + T L + + + Q D + DG I
Sbjct: 22 DGEELARLRSVFAACDANRSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAIT 79
Query: 139 YEDFVTLM 146
+++F
Sbjct: 80 FQEFARGF 87
Score = 68.9 bits (169), Expect = 2e-16
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
E++ + F+ + GR+ E + L + P +AE + + +D ++
Sbjct: 17 QGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAE--AVFQRLDADR 74
Query: 61 RGTIDFPEFLTVMARKL 77
G I F EF L
Sbjct: 75 DGAITFQEFARGFLGSL 91
Score = 28.1 bits (63), Expect = 0.44
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 107 RHVMTTLGERLSEDEVNEMI---QEADINGDGRINYEDFVTLMTS 148
R + G +E+ + D N GR+ E+F L T
Sbjct: 11 RENLYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTE 55
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 76.4 bits (188), Expect = 2e-18
Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 16/157 (10%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
TE+++ + + F G++ + + + + D N+ G
Sbjct: 22 FTEKEVQQWYKGFI--KDCPSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGR 79
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLG--------- 114
I+F EF+ ++ E+++ AF+++D GYI +E+ ++ +
Sbjct: 80 IEFSEFIQALSVTSRGT-LDEKLRWAFKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVEL 138
Query: 115 ---ERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E E V+ + D N DG++ ++F +
Sbjct: 139 PEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKA 175
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 78.1 bits (193), Expect = 5e-18
Identities = 15/144 (10%), Positives = 26/144 (18%), Gaps = 16/144 (11%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+ + K +G + + E N +
Sbjct: 313 FSVRKQEIIKVTEQLIEAISNGDFE----------SYTKMCDPGMTAFEPEALGNLVEGL 362
Query: 65 DFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNE 124
DF F N+ I + I + + G
Sbjct: 363 DFHRFYFENLWSRNSKPVHTTILNPHIHLMGDESACIAYIRITQYLDAGGI---PRTAQS 419
Query: 125 MIQEADINGDGRINYEDFVTLMTS 148
DG+ V S
Sbjct: 420 EETRVWHRRDGKW---QIVHFHRS 440
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 75.0 bits (184), Expect = 1e-17
Identities = 25/159 (15%), Positives = 62/159 (38%), Gaps = 18/159 (11%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
+EE++ + + SF GRI + ++ + R D N GT
Sbjct: 30 FSEEELCSWYQ--SFLKDCPTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGT 87
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS----- 118
+DF E++ + + ++++ AF ++D G I +E+ ++ + + ++
Sbjct: 88 LDFKEYVIALHMTTAGK-TNQKLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVK 146
Query: 119 ---------EDEVNEMIQEADINGDGRINYEDFVTLMTS 148
E ++ + N D ++ ++F+ +
Sbjct: 147 LLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLA 185
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 74.9 bits (184), Expect = 2e-17
Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 16/156 (10%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLI-REIDVNQRG 62
+ T++++ F N G + + + D + G
Sbjct: 60 KFTKKELQILYRGFK--NECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNG 117
Query: 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT----------- 111
+ F +F+ ++ L E++ AF ++D +K GYI +E+ +M
Sbjct: 118 AVSFEDFIKGLSILLRGT-VQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTY 176
Query: 112 -TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
L E V Q+ D N DG + ++F+
Sbjct: 177 PVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESC 212
Score = 47.2 bits (112), Expect = 3e-07
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 45 TEAELLDLIRE-IDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICA 103
T+ EL L R + G ++ F + ++ DST F FD G +
Sbjct: 62 TKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNGAVSF 121
Query: 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
++ ++ L ++++N DIN DG I E+ + +M +
Sbjct: 122 EDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKA 166
Score = 31.8 bits (72), Expect = 0.056
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMR----------FLGLTPTEAELL--DLIREIDVNQR 61
AF+ ++ DG I E+ +M+ + L +++D N+
Sbjct: 141 NWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKD 200
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFD 94
G + EF+ + E I ++ Q+F+
Sbjct: 201 GVVTIDEFIESCQK-------DENIMRSMQLFE 226
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 73.2 bits (179), Expect = 9e-17
Identities = 30/156 (19%), Positives = 56/156 (35%), Gaps = 16/156 (10%)
Query: 4 QLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRG 62
+ T++++ F N G + + L D + G
Sbjct: 87 KFTKKELQSLYRGFK--NECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNG 144
Query: 63 TIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT----------- 111
I F +F+ ++ L E++K AF ++D +K G I +E+ +M
Sbjct: 145 AIHFEDFVVGLSILLRGT-VHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTY 203
Query: 112 -TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
L E + V Q+ D N DG + ++F+
Sbjct: 204 PILREDAPLEHVERFFQKMDRNQDGVVTIDEFLETC 239
Score = 47.0 bits (111), Expect = 3e-07
Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 45 TEAELLDLIRE-IDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICA 103
T+ EL L R + G +D F + ++ D+T F FD G I
Sbjct: 89 TKKELQSLYRGFKNECPTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHF 148
Query: 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
++ ++ L +++ DIN DG I E+ + +M S
Sbjct: 149 EDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKS 193
Score = 31.9 bits (72), Expect = 0.050
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 19/93 (20%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMR-FLGLTPTEAELLD-----------LIREIDVNQR 61
K AF+ ++ DG I E+ +M+ + + +++D NQ
Sbjct: 168 KWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQD 227
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFD 94
G + EFL + E I + Q+F+
Sbjct: 228 GVVTIDEFLETCQK-------DENIMNSMQLFE 253
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 69.1 bits (169), Expect = 1e-15
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
T+ ++ F N G + + + L D Q G+
Sbjct: 15 FTKRELQVLYR--GFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 72
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLS----- 118
+ F +F+T ++ L E+++ F ++D +K GYI +E+ ++ + + +
Sbjct: 73 VKFEDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 131
Query: 119 -------EDEVNEMIQEADINGDGRINYEDFV 143
V+ Q+ D N DG + ++F+
Sbjct: 132 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFL 163
Score = 49.4 bits (118), Expect = 3e-08
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 45 TEAELLDLIRE-IDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICA 103
T+ EL L R + G ++ F + A+ D++ F FD + G +
Sbjct: 16 TKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKF 75
Query: 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
++ ++ L +++ DIN DG IN E+ + ++ +
Sbjct: 76 EDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 120
Score = 29.4 bits (66), Expect = 0.32
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 19/93 (20%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFLG----------LTPTEAELL--DLIREIDVNQR 61
+ F+ ++ DG I E+ +++ + L +++D N+
Sbjct: 95 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 154
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFD 94
G + EFL + I ++ Q+F
Sbjct: 155 GIVTLDEFLESXQE-------DDNIMRSLQLFQ 180
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 70.0 bits (171), Expect = 1e-15
Identities = 29/155 (18%), Positives = 57/155 (36%), Gaps = 16/155 (10%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLD-LIREIDVNQRGT 63
T+ ++ F N G + + + L D Q G+
Sbjct: 48 FTKRELQVLYRGFK--NECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGS 105
Query: 64 IDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT------------ 111
+ F +F+T ++ L E+++ F ++D +K GYI +E+ ++
Sbjct: 106 VKFEDFVTALSILLRGT-VHEKLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYP 164
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
L E V+ Q+ D N DG + ++F+
Sbjct: 165 VLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESC 199
Score = 48.4 bits (115), Expect = 8e-08
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 45 TEAELLDLIRE-IDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICA 103
T+ EL L R + G ++ F + A+ D++ F FD + G +
Sbjct: 49 TKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSVKF 108
Query: 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
++ ++ L +++ DIN DG IN E+ + ++ +
Sbjct: 109 EDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 153
Score = 32.3 bits (73), Expect = 0.036
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMR----------FLGLTPTEAELL--DLIREIDVNQR 61
+ F+ ++ DG I E+ +++ + L +++D N+
Sbjct: 128 RWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKD 187
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDK 95
G + EFL + I ++ Q+F
Sbjct: 188 GIVTLDEFLESCQE-------DDNIMRSLQLFQN 214
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 65.3 bits (160), Expect = 2e-15
Identities = 11/63 (17%), Positives = 28/63 (44%)
Query: 86 IKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTL 145
+ F+ D + G + +E++ ++ +E + + + D +G+G I+ +F
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKF 61
Query: 146 MTS 148
S
Sbjct: 62 YGS 64
Score = 54.9 bits (133), Expect = 3e-11
Identities = 14/61 (22%), Positives = 22/61 (36%)
Query: 14 KEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVM 73
+ F + GDG + E+ + E L + + ID + G ID EF
Sbjct: 3 EALFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFY 62
Query: 74 A 74
Sbjct: 63 G 63
Score = 52.9 bits (128), Expect = 1e-10
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 49 LLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRH 108
L +EIDVN G + + E + K + + ++ F+ D G I +E
Sbjct: 2 AEALFKEIDVNGDGAVSYEEVKAFV-SKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAK 60
Query: 109 VMTTL 113
++
Sbjct: 61 FYGSI 65
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 63.0 bits (153), Expect = 2e-13
Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 25 DGRIPIHELGTVMRFLGLTPTEAELLD------LIREIDVNQRGTIDFPEFLTVMARKLN 78
I +L ++ LT ++ L+ +++ G +D EF + R
Sbjct: 18 GSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQEEFARLWKR--- 74
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMT----TLGERLSEDEVNEMIQEADINGD 134
+ FQ G + + +L + G +S + ++ + +
Sbjct: 75 ----LVHYQHVFQKVQTSP-GVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYS-DSV 128
Query: 135 GRINYEDFVTLM 146
GR+++ V +
Sbjct: 129 GRVSFPSLVCFL 140
Score = 38.4 bits (89), Expect = 2e-04
Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 82 STEEIKQAF-QVFDKHKQGYICADELRHVMTTLG------ERLSEDEVNEMIQEADINGD 134
S+ + + I A +L+ ++ + S DE ++ ++ +
Sbjct: 3 SSHHHHHHSSGLVPRG--SDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVN 60
Query: 135 GRINYEDFVTLM 146
GR++ E+F L
Sbjct: 61 GRLDQEEFARLW 72
Score = 38.4 bits (89), Expect = 2e-04
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 8 EQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEA---ELLDLIREIDVNQRGTI 64
+++ ++ F G + +L + ELL L+ + G +
Sbjct: 73 KRLVHYQHVFQKVQTSP-GVLLSSDLWKAIENTDFLRGIFISRELLHLVTLRYSDSVGRV 131
Query: 65 DFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQG 99
FP + + R E + + F+ K +G
Sbjct: 132 SFPSLVCFLMR-------LEAMAKTFRNLSKDGKG 159
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 63.4 bits (153), Expect = 9e-13
Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
A +++EQ+N+F+ +F+ F+R+ G + + + +G EAE ++ +D N+
Sbjct: 716 AKGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRM 775
Query: 62 GTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDE 121
G + F F+ M+R+ D+ +++ +F++ K YI DELR + +E
Sbjct: 776 GVVTFQAFIDFMSRETADTDTADQVMASFKILAGDK-NYITVDELRRELPP---DQAEYC 831
Query: 122 VNEMIQEADINGD-GRINYEDFVT 144
+ M + G ++Y F T
Sbjct: 832 IARMAPYNGRDAVPGALDYMSFST 855
Score = 51.4 bits (122), Expect = 2e-08
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 76 KLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDG 135
K + + E + +F FD+ K G + ++ R + ++G + E E ++ D N G
Sbjct: 717 KGISQEQMNEFRASFNHFDRKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMG 776
Query: 136 RINYEDFVTLMT 147
+ ++ F+ M+
Sbjct: 777 VVTFQAFIDFMS 788
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 56.2 bits (136), Expect = 2e-11
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
+P + + F DK G++ E+R + G L + + D G+++
Sbjct: 5 SPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG--LPSTLLAHIWSLCDTKDCGKLS 62
Query: 139 YEDFVTLM 146
+ F
Sbjct: 63 KDQFALAF 70
Score = 47.0 bits (112), Expect = 5e-08
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
++ + + E F ++ DG + E+ + GL L + D G +
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGL--PSTLLAHIWSLCDTKDCGKL 61
Query: 65 DFPEFLTVM 73
+F
Sbjct: 62 SKDQFALAF 70
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 56.7 bits (137), Expect = 2e-11
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
S + +Q F DK G++ + R ++ L + ++ + +DI+ DG++
Sbjct: 9 PQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSS--LPQAQLASIWNLSDIDQDGKLT 66
Query: 139 YEDFVTLM 146
E+F+ M
Sbjct: 67 AEEFILAM 74
Score = 48.6 bits (116), Expect = 2e-08
Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+ + +++ F+ ++ G + + T++ L +A+L + D++Q G +
Sbjct: 8 VPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSL--PQAQLASIWNLSDIDQDGKL 65
Query: 65 DFPEFLTVM 73
EF+ M
Sbjct: 66 TAEEFILAM 74
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 58.6 bits (141), Expect = 4e-11
Identities = 21/139 (15%), Positives = 56/139 (40%), Gaps = 18/139 (12%)
Query: 18 SFFNR--QGDGRIPIHELGTVMRFLGLTPTEAEL----LDLIREI----DVNQRGTIDFP 67
F + D + EL ++ + + + +D R + D + G + F
Sbjct: 735 KLFVQLAGDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFE 794
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQ 127
EF + ++ + ++ F+ + G I ++EL G L++ + +I+
Sbjct: 795 EFKYLWNN-------IKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQHIYSMIIR 847
Query: 128 EADINGDGRINYEDFVTLM 146
+ G +++++F++ +
Sbjct: 848 RYS-DETGNMDFDNFISCL 865
Score = 51.3 bits (122), Expect = 1e-08
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT 111
++ +D + G + EF + R F+ FD K G + A E+R +
Sbjct: 582 MVNLMDRDGNGKLGLVEFNILWNR-------IRNYLTIFRKFDLDKSGSMSAYEMRMAIE 634
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
G +L ++ + + I++++FV +
Sbjct: 635 AAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCL 668
Score = 38.6 bits (89), Expect = 4e-04
Identities = 23/160 (14%), Positives = 46/160 (28%), Gaps = 30/160 (18%)
Query: 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEF 69
I ++ F F+ G + +E+ + G +L +I + IDF F
Sbjct: 606 IRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPC-QLHQVIVARFADDELIIDFDNF 664
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYI-------------------CADELRHVM 110
+ + R E + + F+ D G I H M
Sbjct: 665 VRCLVR-------LEILFKIFKQLDPENTGTIQLDLISWLSFSVLGKLAAAIEHHHHHHM 717
Query: 111 TTLGERLSEDEVNEMIQ---EADINGDGRINYEDFVTLMT 147
+E E + D ++ + + ++
Sbjct: 718 HYSNIEANESEEERQFRKLFVQLAGDDMEVSATELMNILN 757
Score = 37.4 bits (86), Expect = 0.001
Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 10 INDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEF 69
I ++ + F G I +EL G + + +I ++ G +DF F
Sbjct: 803 IKKWQGIYKRFETDRSGTIGSNELPGAFEAAGFHLNQ-HIYSMIIRRYSDETGNMDFDNF 861
Query: 70 LTVMARKLNTPDSTEEIKQAFQVFDKHKQGYIC 102
++ + R + + +AF+ DK+ G I
Sbjct: 862 ISCLVR-------LDAMFRAFRSLDKNGTGQIQ 887
Score = 32.1 bits (72), Expect = 0.065
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 10/123 (8%)
Query: 34 GTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVF 93
G + E L+R + GT + + + E +F
Sbjct: 481 GEYIVVPSTFEPNKEGDFLLRFFSEKKAGTQELDDQIQANLPDEKVLSEEEIDDNFKTLF 540
Query: 94 DKH--KQGYICADELRHVMTTLGER--------LSEDEVNEMIQEADINGDGRINYEDFV 143
K I EL+ ++ + + S + M+ D +G+G++ +F
Sbjct: 541 SKLAGDDMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFN 600
Query: 144 TLM 146
L
Sbjct: 601 ILW 603
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis complex;
NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 54.7 bits (132), Expect = 5e-11
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
T + + F+ G+I + T L E++ + + +D + DG +
Sbjct: 4 TDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSK--LPILELSHIWELSDFDKDGALT 61
Query: 139 YEDFVTLM 146
++F
Sbjct: 62 LDEFCAAF 69
Score = 47.0 bits (112), Expect = 4e-08
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+T+EQ + F +G IP L EL + D ++ G +
Sbjct: 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKL--PILELSHIWELSDFDKDGAL 60
Query: 65 DFPEFLTVM 73
EF
Sbjct: 61 TLDEFCAAF 69
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 55.1 bits (133), Expect = 5e-11
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 79 TPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
T + E F+ +I ++ T LS E++ + + +D + DG +
Sbjct: 17 TEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSK--LSIPELSYIWELSDADCDGALT 74
Query: 139 YEDFVTLM 146
+F
Sbjct: 75 LPEFCAAF 82
Score = 45.1 bits (107), Expect = 3e-07
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+TEEQ + F I L + EL + D + G +
Sbjct: 16 ITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKL--SIPELSYIWELSDADCDGAL 73
Query: 65 DFPEFLTVM 73
PEF
Sbjct: 74 TLPEFCAAF 82
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 55.0 bits (132), Expect = 1e-10
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 68 EFLTVMARKLNTPDSTEEIK-QAFQVFDKHKQGYICADELRHVMTTL--------GERLS 118
E L + K S +E++ F++ D + EL +T + +S
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMS 110
Query: 119 EDEVNEMI----QEADINGDGRINYEDFVTLM 146
EDE+ +I ++ D N DG I+Y +F +
Sbjct: 111 EDELINIIDGVLRDDDKNNDGYIDYAEFAKSL 142
Score = 33.4 bits (76), Expect = 0.009
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 3 DQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFL--------GLTPTEAELLDLI- 53
+++ +++ F + G+ + EL T + + +E EL+++I
Sbjct: 62 AEMSPQELQLH--YFKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIID 119
Query: 54 ---REIDVNQRGTIDFPEFLTVM 73
R+ D N G ID+ EF +
Sbjct: 120 GVLRDDDKNNDGYIDYAEFAKSL 142
Score = 26.1 bits (57), Expect = 4.0
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 104 DELRHVMTTLGERLSEDEVN-EMIQEADINGDGRINYEDFVTLMT 147
+ L V+ +S E+ + D +G+ ++ + T +T
Sbjct: 51 EHLEGVINKPEAEMSPQELQLHYFKMHDYDGNNLLDGLELSTAIT 95
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 53.7 bits (128), Expect = 2e-09
Identities = 13/95 (13%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 52 LIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMT 111
++ +D + G + EF + + ++ ++ ++ D + G + + E+R +
Sbjct: 580 MVDMLDEDGSGKLGLKEFYILWTK-------IQKYQKIYREIDVDRSGTMNSYEMRKALE 632
Query: 112 TLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
G +L ++ + + I++++FV +
Sbjct: 633 EAGFKLPCQLHQVIVARFA-DDELIIDFDNFVRCL 666
Score = 40.2 bits (93), Expect = 1e-04
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 9 QINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPE 68
+I +++ + + G + +E+ + G +L +I + IDF
Sbjct: 603 KIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPC-QLHQVIVARFADDELIIDFDN 661
Query: 69 FLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYIC 102
F+ + R E + + F+ D G I
Sbjct: 662 FVRCLVR-------LEILFKIFKQLDPENTGTIQ 688
Score = 32.1 bits (72), Expect = 0.065
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 9/97 (9%)
Query: 59 NQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTL----- 113
T+D + + N D + ++ F + I A EL+ ++ +
Sbjct: 507 ADYQTVDDEIEANIEEIEANEEDIGDGFRRLFAQLA-GEDAEISAFELQTILRRVLAKRE 565
Query: 114 ---GERLSEDEVNEMIQEADINGDGRINYEDFVTLMT 147
+ S + M+ D +G G++ ++F L T
Sbjct: 566 DIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWT 602
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 49.1 bits (117), Expect = 1e-08
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 82 STEEIKQAFQVFDKHK--QGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINY 139
+ EE + Q F K G+I D+ R+ G L + + ++ AD+N DGR++
Sbjct: 28 TVEERAKHDQQFHSLKPISGFITGDQARNFFFQSG--LPQPVLAQIWALADMNNDGRMDQ 85
Query: 140 EDFVTLM 146
+F M
Sbjct: 86 VEFSIAM 92
Score = 37.5 bits (87), Expect = 2e-04
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+T E+ + F G I + GL + L + D+N G +
Sbjct: 27 ITVEERAKHDQQFHSLK-PISGFITGDQARNFFFQSGLP--QPVLAQIWALADMNNDGRM 83
Query: 65 DFPEFLTVM 73
D EF M
Sbjct: 84 DQVEFSIAM 92
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 48.2 bits (115), Expect = 2e-08
Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 81 DSTEEIKQAFQVFDKHKQGYICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDG 135
+ E + F F K GY+ ++LR +M L + V++++++ D DG
Sbjct: 6 HAMETMMFTFHKFAGDK-GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDG 64
Query: 136 RINYEDFVTLMTS 148
++ ++ F +L+
Sbjct: 65 KVGFQSFFSLIAG 77
Score = 32.8 bits (75), Expect = 0.008
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR-----FLGLTPTEAELLDLIREIDVNQ 60
E + F F G + +L +M FL + +++++D +
Sbjct: 4 MEHAMETMMFTFHKFAGD-KGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCR 62
Query: 61 RGTIDFPEFLTVMAR 75
G + F F +++A
Sbjct: 63 DGKVGFQSFFSLIAG 77
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 47.1 bits (112), Expect = 4e-08
Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 88 QAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLM 146
+ ++ + G + A + + G L + + ++ AD +G G ++ ++F +
Sbjct: 15 KYYRQVEAGNTGRVLALDAAAFLKKSG--LPDLILGKIWDLADTDGKGVLSKQEFFVAL 71
Score = 42.5 bits (100), Expect = 3e-06
Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQ 60
++ +++ + GR+ + ++ GL L + D +
Sbjct: 1 LSLTQLSSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDL--ILGKIWDLADTDG 58
Query: 61 RGTIDFPEFLTVMA 74
+G + EF +
Sbjct: 59 KGVLSKQEFFVALR 72
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH
domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A
1f8h_A 1ff1_A
Length = 106
Score = 47.1 bits (112), Expect = 6e-08
Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 82 STEEIKQAFQVFDKH--KQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINY 139
E+ + +FD G++ D+++ V+ L D + + + +DI+ DG ++
Sbjct: 10 KPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK--LPVDILGRVWELSDIDHDGMLDR 67
Query: 140 EDFVTLM 146
++F M
Sbjct: 68 DEFAVAM 74
Score = 36.3 bits (84), Expect = 5e-04
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 5 LTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTI 64
+ E + F + +G + ++ V+ L L + D++ G +
Sbjct: 9 VKPEDKAKYDAIFDSLS-PVNGFLSGDKVKPVLLNSKLP--VDILGRVWELSDIDHDGML 65
Query: 65 DFPEFLTVM 73
D EF M
Sbjct: 66 DRDEFAVAM 74
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 46.2 bits (110), Expect = 8e-08
Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 82 STEEIKQAFQVFDKHK--QGYICADELRHVMTT-LGERL-SEDEVNEMIQEADINGDGRI 137
S E+K F+ + + + +EL+ ++ L ++++ QE D NGDG +
Sbjct: 5 SPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEV 64
Query: 138 NYEDFVTLMTS 148
++E+F L+
Sbjct: 65 SFEEFQVLVKK 75
Score = 34.2 bits (79), Expect = 0.002
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 6 TEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR--FLGLTPTEAELLDLIREIDVNQR 61
++ + K F + ++GD ++ EL +++ F L L DL +E+D N
Sbjct: 2 AQKSPAELKSIFEKYAAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGD 61
Query: 62 GTIDFPEFLTVMAR 75
G + F EF ++ +
Sbjct: 62 GEVSFEEFQVLVKK 75
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding
protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Length = 113
Score = 46.1 bits (109), Expect = 2e-07
Identities = 14/89 (15%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 67 PEFLTVMARKLNTPDSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSE 119
MA L + + + F + + + + EL+ ++T LG+R E
Sbjct: 7 HHHHGSMACPL--EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDE 64
Query: 120 DEVNEMIQEADINGDGRINYEDFVTLMTS 148
+++ D N D ++++++ ++
Sbjct: 65 AAFQKLMSNLDSNRDNEVDFQEYCVFLSC 93
Score = 33.0 bits (75), Expect = 0.011
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR-----FLGLTPTEAELLDLI 53
MA L E+ ++ F + ++GD ++ EL ++ FLG EA L+
Sbjct: 13 MACPL-EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLM 71
Query: 54 REIDVNQRGTIDFPEFLTVMAR 75
+D N+ +DF E+ ++
Sbjct: 72 SNLDSNRDNEVDFQEYCVFLSC 93
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 47.6 bits (112), Expect = 2e-07
Identities = 20/142 (14%), Positives = 47/142 (33%), Gaps = 11/142 (7%)
Query: 13 FKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTV 72
++ D ++ EL ++ L + + + RE D +Q +++ E T
Sbjct: 13 IHSCLRKADKNKDNKMNFKELKDFLKELNIQVDDGYARKIFRECDHSQTDSLEDEEIET- 71
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTT------LGERLSEDEVNEMI 126
+ L EI +AF+ + + + L + G L+ +
Sbjct: 72 FYKMLTQR---AEIDRAFEEAAGSAE-TLSVERLVTFLQHQQREEEAGPALALSLIERYE 127
Query: 127 QEADINGDGRINYEDFVTLMTS 148
++ + F+ + S
Sbjct: 128 PSETAKAQRQMTKDGFLMYLLS 149
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1mr8_A
Length = 93
Score = 44.8 bits (106), Expect = 3e-07
Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 84 EEIKQAFQVFDKH-----KQGYICADELRHVMTT-LGERLSEDEVNEMIQEADINGDGRI 137
+ + V+ K+ + D+L+ ++ T + + + + +E DIN DG +
Sbjct: 7 KALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAV 66
Query: 138 NYEDFVTLMTS 148
N+++F+ L+
Sbjct: 67 NFQEFLILVIK 77
Score = 29.7 bits (67), Expect = 0.12
Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 6 TEEQINDFKEAF-SFFNRQGDG-RIPIHELGTVMRF-LGLTPTEAELLDLIREIDVNQRG 62
E+ +N + + + +G+ + +L ++ + +E+D+N G
Sbjct: 5 LEKALNSIIDVYHKYSLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDG 64
Query: 63 TIDFPEFLTVMAR 75
++F EFL ++ +
Sbjct: 65 AVNFQEFLILVIK 77
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins, protein
dynamics, binding protein; 2.10A {Homo sapiens} PDB:
2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 43.3 bits (102), Expect = 2e-06
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 88 QAFQVFDKHKQGYICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDGRINYEDF 142
+ + I R ++ L + + +++IQ D N DGRI+++++
Sbjct: 18 YKYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFDEY 77
Query: 143 VTLMTS 148
TL+
Sbjct: 78 WTLIGG 83
Score = 31.3 bits (71), Expect = 0.035
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 38 RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
L T LI+ +D N G I F E+ T++
Sbjct: 46 HMLSDTGNRKAADKLIQNLDANHDGRISFDEYWTLIGG 83
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 42.6 bits (100), Expect = 3e-06
Identities = 12/75 (16%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 81 DSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSEDEVNEMIQEADING 133
+ + + F + + + + EL+ ++T LG+R E +++ D N
Sbjct: 10 KALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNR 69
Query: 134 DGRINYEDFVTLMTS 148
D ++++++ ++S
Sbjct: 70 DNEVDFQEYCVFLSS 84
Score = 32.5 bits (74), Expect = 0.013
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR-----FLGLTPTEAELLDLI 53
MA L E+ ++ F + ++GD ++ EL ++ +LG EA L+
Sbjct: 4 MASPL-EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLM 62
Query: 54 REIDVNQRGTIDFPEFLTVMAR 75
+D N+ +DF E+ ++
Sbjct: 63 SNLDSNRDNEVDFQEYCVFLSS 84
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 42.1 bits (99), Expect = 3e-06
Identities = 14/83 (16%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSEDEVNEM 125
MA L + + + F + + + + EL+ ++T LG+R E ++
Sbjct: 1 MACPL--EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKL 58
Query: 126 IQEADINGDGRINYEDFVTLMTS 148
+ D N D ++++++ ++
Sbjct: 59 MSNLDSNRDNEVDFQEYCVFLSC 81
Score = 33.2 bits (76), Expect = 0.006
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR-----FLGLTPTEAELLDLI 53
MA L E+ ++ F + ++GD ++ EL ++ FLG EA L+
Sbjct: 1 MACPL-EKALDVMVSTFHKYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLM 59
Query: 54 REIDVNQRGTIDFPEFLTVMAR 75
+D N+ +DF E+ ++
Sbjct: 60 SNLDSNRDNEVDFQEYCVFLSC 81
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 43.1 bits (101), Expect = 4e-06
Identities = 17/110 (15%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 47 AELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADEL 106
++ D + + + E +L ++ F + DK+ G + A+E+
Sbjct: 62 VQMFDSLARKRGIVKQVLTKDELKDFY-EQLTDQGFDNRLRTFFDMVDKNADGRLTAEEV 120
Query: 107 RHV----MTTLGERLSEDEVNE----MIQEADINGDGRINYEDFVTLMTS 148
+ + + ++ +E +++E D G I ED L+
Sbjct: 121 KEIIALSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLLQ 170
Score = 29.3 bits (65), Expect = 0.35
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 11/91 (12%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRF------LGLTPTEAELLD--L 52
+ DQ + ++ F F ++ DGR+ E+ ++ L A+ +
Sbjct: 91 LTDQGFDNRLRTF---FDMVDKNADGRLTAEEVKEIIALSASANKLSKIKERADEYTALI 147
Query: 53 IREIDVNQRGTIDFPEFLTVMARKLNTPDST 83
+ E+D G I+ + ++ + + +
Sbjct: 148 MEELDPTNLGYIEMEDLEALLLQSPSEAAAR 178
Score = 26.6 bits (58), Expect = 2.9
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 15 EAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEF----- 69
++ + + EL L + L +D N G + E
Sbjct: 66 DSLARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIA 125
Query: 70 LTVMARKLNTPD--STEEIKQAFQVFDKHKQGYICADELRHVMT 111
L+ A KL+ + E + D GYI ++L ++
Sbjct: 126 LSASANKLSKIKERADEYTALIMEELDPTNLGYIEMEDLEALLL 169
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo
sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Length = 139
Score = 42.2 bits (99), Expect = 7e-06
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 82 STEEIKQAFQVFDKH--KQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINY 139
++ ++F G I + M L + ++ + AD++ DG ++
Sbjct: 46 VGKDKPTYDEIFYTLSPVNGKITGANAKKEMVKSK--LPNTVLGKIWKLADVDKDGLLDD 103
Query: 140 EDFVTLM 146
E+F
Sbjct: 104 EEFALAN 110
Score = 30.7 bits (69), Expect = 0.097
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTID 65
+ + E F + +G+I M L P L + + DV++ G +D
Sbjct: 46 VGKDKPTYDEIFYTLS-PVNGKITGANAKKEMVKSKL-PNT-VLGKIWKLADVDKDGLLD 102
Query: 66 FPEFLTVMA 74
EF
Sbjct: 103 DEEFALANH 111
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 40.6 bits (95), Expect = 1e-05
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 15/86 (17%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKH-----KQGYICADELRHVMTT-----LGERLSEDEV 122
MAR L + + F ++ + +C EL+ ++ E +
Sbjct: 1 MARPL-----EQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDY 55
Query: 123 NEMIQEADINGDGRINYEDFVTLMTS 148
N+ + D N D +++ ++V +
Sbjct: 56 NKFMSVLDTNKDCEVDFVEYVRSLAC 81
Score = 32.1 bits (73), Expect = 0.018
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGDGR-IPIHELGTVMR-----FLGLTPTEAELLDLI 53
MA L E+ + F + R GD + EL +++ + E + +
Sbjct: 1 MARPL-EQAVAAIVCTFQEYAGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFM 59
Query: 54 REIDVNQRGTIDFPEFLTVMAR 75
+D N+ +DF E++ +A
Sbjct: 60 SVLDTNKDCEVDFVEYVRSLAC 81
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB:
2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 39.4 bits (92), Expect = 4e-05
Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 79 TPDSTEE-IKQAFQVFDKH--KQGYICADELRHVMTTL-------GERLSEDEVNEMIQE 128
+ E I +F K+ + I L +M ++ + + ++ ++
Sbjct: 1 SNTQAERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEK 60
Query: 129 ADINGDGRINYEDFVTLM 146
D N D +I++ +F++L+
Sbjct: 61 KDKNEDKKIDFSEFLSLL 78
Score = 29.4 bits (66), Expect = 0.19
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 32 ELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
+ T L D+ + D N+ IDF EFL+++
Sbjct: 38 NFPNFLSACDKKGTNY-LADVFEKKDKNEDKKIDFSEFLSLLGD 80
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type
four-helix bundle, metal binding protein; NMR {Rattus
norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A
2l0p_A 2jpt_A
Length = 93
Score = 39.0 bits (91), Expect = 4e-05
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 86 IKQAFQVFDKH-----KQGYICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDG 135
++ VF H + + EL+ ++ T L + D V+++++E D NGDG
Sbjct: 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDG 67
Query: 136 RINYEDFVTLMTS 148
+++++FV L+ +
Sbjct: 68 EVDFQEFVVLVAA 80
Score = 30.5 bits (69), Expect = 0.052
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 38 RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
FL + + +++E+D N G +DF EF+ ++A
Sbjct: 43 SFLDVQKDADAVDKIMKELDENGDGEVDFQEFVVLVAA 80
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free,
signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A
2cnp_A 2jtt_A
Length = 90
Score = 38.6 bits (90), Expect = 7e-05
Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 86 IKQAFQVFDKH-----KQGYICADELRHVMTT---LGERLSEDEVNEMIQEADINGDGRI 137
I +F K+ + + EL+ ++ +G +L + E+ ++++ D N D +
Sbjct: 9 IGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEV 68
Query: 138 NYEDFVTLMTS 148
N++++VT + +
Sbjct: 69 NFQEYVTFLGA 79
Score = 29.0 bits (65), Expect = 0.21
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR---FLGLTPTEAELLDLIRE 55
MA L ++ I F + R+GD + EL +++ +G +AE+ L+ +
Sbjct: 1 MAMPL-DQAIGLLVAIFHKYSGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMED 59
Query: 56 IDVNQRGTIDFPEFLTVMAR 75
+D N+ ++F E++T +
Sbjct: 60 LDRNKDQEVNFQEYVTFLGA 79
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 38.7 bits (90), Expect = 8e-05
Identities = 10/84 (11%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 72 VMARKLNTPDSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSEDEVNE 124
+M+ L + + F + + + + E++ ++ +GE++ E+ + +
Sbjct: 1 MMSSSLEQ--ALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKK 58
Query: 125 MIQEADINGDGRINYEDFVTLMTS 148
++ D N D +++++++ +
Sbjct: 59 LMGSLDENSDQQVDFQEYAVFLAL 82
Score = 29.0 bits (65), Expect = 0.20
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVM-----RFLGLTPTEAELLDLI 53
M+ L E+ + F + +++GD ++ E+ ++ F+G E L L+
Sbjct: 2 MSSSL-EQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLM 60
Query: 54 REIDVNQRGTIDFPEFLTVMAR 75
+D N +DF E+ +A
Sbjct: 61 GSLDENSDQQVDFQEYAVFLAL 82
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 38.3 bits (89), Expect = 1e-04
Identities = 13/73 (17%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 86 IKQAFQVFDKH-----KQGYICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDG 135
+ VF ++ + EL+ +M L +D V++++++ D NGD
Sbjct: 8 MGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDA 67
Query: 136 RINYEDFVTLMTS 148
++++ +F+ + +
Sbjct: 68 QVDFSEFIVFVAA 80
Score = 29.8 bits (67), Expect = 0.13
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 38 RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
FL + + L++++D N +DF EF+ +A
Sbjct: 43 GFLQSGKDKDAVDKLLKDLDANGDAQVDFSEFIVFVAA 80
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response, metal
binding PR; 1.73A {Homo sapiens} PDB: 1odb_A* 2wc8_A
2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 38.2 bits (89), Expect = 1e-04
Identities = 11/73 (15%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 86 IKQAFQVFDKH-----KQGYICADELRHVMTT-----LGERLSEDEVNEMIQEADINGDG 135
++ +F ++ + EL+ ++T + + ++E+ Q D N D
Sbjct: 11 LEGIVNIFHQYSVRKGHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDE 70
Query: 136 RINYEDFVTLMTS 148
++++++F++L+
Sbjct: 71 QVDFQEFISLVAI 83
Score = 29.7 bits (67), Expect = 0.12
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 38 RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
+ +A + ++ + +D NQ +DF EF++++A
Sbjct: 46 NTIKNIKDKAVIDEIFQGLDANQDEQVDFQEFISLVAI 83
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 37.9 bits (88), Expect = 1e-04
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 72 VMARKLNTP--DSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-LGERL-SEDEVNEM 125
+MA + T +S E + F F + + + + +E + ++T L L ++E
Sbjct: 8 LMAAEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEK 67
Query: 126 IQEADINGDGRINYEDFVTLMTS 148
++ D+N D + + ++ L+
Sbjct: 68 MKSLDVNQDSELKFNEYWRLIGE 90
Score = 30.9 bits (70), Expect = 0.058
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 1 MADQLT--EEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR--FLGLTPTEAELLDLIR 54
A+ LT EE I F +F ++G + ++E ++ L L + ++
Sbjct: 10 AAEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMK 69
Query: 55 EIDVNQRGTIDFPEFLTVMAR 75
+DVNQ + F E+ ++
Sbjct: 70 SLDVNQDSELKFNEYWRLIGE 90
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 37.9 bits (88), Expect = 1e-04
Identities = 14/83 (16%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 73 MARKLNTPDSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSEDEVNEM 125
M KL + + + F + + + + EL+ ++ L + V ++
Sbjct: 1 MPSKL--EGAMDALITVFHNYSGSEGDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKI 58
Query: 126 IQEADINGDGRINYEDFVTLMTS 148
+ + D N D +++ +FV L+ +
Sbjct: 59 MNDLDSNKDNEVDFNEFVVLVAA 81
Score = 28.3 bits (63), Expect = 0.43
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 38 RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
FL + ++ ++D N+ +DF EF+ ++A
Sbjct: 44 DFLMSQKDPMLVEKIMNDLDSNKDNEVDFNEFVVLVAA 81
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 37.8 bits (88), Expect = 2e-04
Identities = 10/70 (14%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 86 IKQAFQVFDKH-----KQGYICADELRHVMTT--LGERLSEDEVNEMIQEADINGDGRIN 138
+ F K+ + + EL+ ++ + E ++++++ D N D I+
Sbjct: 9 LTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEID 68
Query: 139 YEDFVTLMTS 148
++++ +T
Sbjct: 69 FKEYSVFLTM 78
Score = 29.3 bits (66), Expect = 0.18
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 1 MADQLTEEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR--FLGLTPTEAELLDLIREI 56
M L E+ + F + R+G + EL +++ E+ + DL++ +
Sbjct: 1 METPL-EKALTTMVTTFHKYSGREGSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSL 59
Query: 57 DVNQRGTIDFPEFLTVMAR 75
D N IDF E+ +
Sbjct: 60 DKNSDQEIDFKEYSVFLTM 78
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 37.5 bits (87), Expect = 2e-04
Identities = 12/75 (16%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 81 DSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSEDEVNEMIQEADING 133
+ + F + + + + EL+ ++ L E ++ V+++++ D NG
Sbjct: 6 KAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNG 65
Query: 134 DGRINYEDFVTLMTS 148
DG ++++F+ +
Sbjct: 66 DGECDFQEFMAFVAM 80
Score = 28.2 bits (63), Expect = 0.35
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 38 RFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
FL + + ++ +D N G DF EF+ +A
Sbjct: 43 HFLEEIKEQEVVDKVMETLDSNGDGECDFQEFMAFVAM 80
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 37.1 bits (86), Expect = 3e-04
Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Query: 81 DSTEEIKQAFQVFDKHK--QGYICADELRHVMTT-----LGERLSEDEVNEMIQEADING 133
E + FQ I E M T + ++ M+++ D++
Sbjct: 10 RCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDS 69
Query: 134 DGRINYEDFVTLMTS 148
DG++++++F+ L+
Sbjct: 70 DGQLDFQEFLNLIGG 84
Score = 28.7 bits (64), Expect = 0.30
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 1 MADQLT--EEQINDFKEAF-SFFNRQGD-GRIPIHELGTVMR-----FLGLTPTEAELLD 51
MA + T E I F R G+ +I E M F L
Sbjct: 1 MAKRPTETERCIESLIAIFQKHAGRDGNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDR 60
Query: 52 LIREIDVNQRGTIDFPEFLTVMAR 75
+++++D++ G +DF EFL ++
Sbjct: 61 MMKKLDLDSDGQLDFQEFLNLIGG 84
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding protein;
HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2 PDB:
1irj_A*
Length = 113
Score = 36.8 bits (85), Expect = 4e-04
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 81 DSTEEIKQAFQVFDKHK--QGYICADELRHVMTT------LGERLSEDEVNEMIQEADIN 132
+ E I F + + E + ++ E +E + ++++ D N
Sbjct: 9 RNIETIINTFHQYSVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTN 68
Query: 133 GDGRINYEDFVTLMTS 148
D ++++E+F+ LM
Sbjct: 69 ADKQLSFEEFIMLMAR 84
Score = 29.9 bits (67), Expect = 0.15
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 32 ELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMAR 75
+L ++ E ++ ++D N + F EF+ +MAR
Sbjct: 43 DLQNFLKKENKNEKVIE--HIMEDLDTNADKQLSFEEFIMLMAR 84
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 34.9 bits (80), Expect = 0.002
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 85 EIKQAFQVFDKHKQGYICADELRHVMTTLGERLS------------EDEVNEMI----QE 128
K F + D + G + EL + T E++ E+E M +
Sbjct: 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKN 80
Query: 129 ADINGDGRINYEDFVTLMTS 148
D N D + E+F+
Sbjct: 81 VDTNQDRLVTLEEFLASTQR 100
Score = 24.9 bits (54), Expect = 6.3
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 12 DFKEAFSFFNRQGDGRIPIHELGTVM------------RFLGLTPTEAELLDLI----RE 55
+ K F + DG + EL + + E E L + +
Sbjct: 21 NPKTFFILHDINSDGVLDEQELEALFTKELEKVYDPKNEEDDMREMEEERLRMREHVMKN 80
Query: 56 IDVNQRGTIDFPEFLTVMARK 76
+D NQ + EFL RK
Sbjct: 81 VDTNQDRLVTLEEFLASTQRK 101
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 35.8 bits (82), Expect = 0.002
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR----FLGLT-PTEAELLDLIREI 56
+ L+E+ + F E + F+ + I L L + P + L+++ ++
Sbjct: 11 TEPLSEDDFDMFYEIWEKFDPEATQFIEYSVLSDFADALSEPLRIAKPNQISLINM--DL 68
Query: 57 DVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGER 116
+ I + L +++ +S E Q+ +K + TTL R
Sbjct: 69 PMVSGDRIHCMDILFAFTKRVLG-ESGEMDALKIQMEEKFMAANPSKISYEPITTTL-RR 126
Query: 117 LSEDEVNEMIQEA 129
E+ +IQ A
Sbjct: 127 KHEEVSAMVIQRA 139
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium
channel, alternative splicing, disease epilepsy,
glycoprotein, ION transport; NMR {Homo sapiens} PDB:
2kbi_A
Length = 129
Score = 34.4 bits (79), Expect = 0.004
Identities = 14/93 (15%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMR----FLGLT-PTEAELLDLIREI 56
A+ L+E+ F E + F+ I +L L + P + +L+ + ++
Sbjct: 34 AEPLSEDDFEMFYEVWEKFDPDATQFIEFAKLSDFADALDPPLLIAKPNKVQLIAM--DL 91
Query: 57 DVNQRGTIDFPEFLTVMARK-LNTPDSTEEIKQ 88
+ I + L ++ L + ++
Sbjct: 92 PMVSGDRIHCLDILFAFTKRVLGESGEMDALRI 124
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.008
Identities = 34/170 (20%), Positives = 51/170 (30%), Gaps = 50/170 (29%)
Query: 2 ADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQR 61
A QL E+ E F + P EL V +FLG + E + + V
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPTTPA-EL--VGKFLGYVSSLVEPSKVGQFDQVLNL 86
Query: 62 GTIDF-PEFL------TVMARKLNTPDSTEE-----IKQAFQV-------FDKHK----- 97
+F +L + A+ L D+T IK FDK
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 98 ----------------QGYI--CADELRHVMTTLGERLSEDEVNEMIQEA 129
QG +ELR + T V ++I+ +
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT-----YHVLVGDLIKFS 191
Score = 27.3 bits (60), Expect = 2.3
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 17 FSFFNRQGDGRIPIHELGTVMRFLGLT--PTEAELLD-----LIREIDVNQRGTIDFPEF 69
+ F QG+ EL R L T +L+ L I F +
Sbjct: 157 VAIFGGQGNTDDYFEEL----RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 70 LTVMARKLNTPDST 83
L ++ L P +T
Sbjct: 213 LNILEW-LENPSNT 225
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.014
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 29/111 (26%)
Query: 5 LTEEQINDFK--EAFSFFNRQGDGRIPIHELGTVMRFLGLTPTEAELL----DLIREIDV 58
+ + +K F I L L + +L L+ +ID
Sbjct: 166 VALDVCLSYKVQCKMDF---------KIFWLN-----LKNCNSPETVLEMLQKLLYQIDP 211
Query: 59 NQRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHV 109
N D N I+ + K K C L +V
Sbjct: 212 NWTSRSDHSS---------NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Score = 27.9 bits (61), Expect = 1.6
Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 30/99 (30%)
Query: 51 DLIREIDVNQRGTIDFPEFL-TVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHV 109
+ D D + +++ S EEI D +
Sbjct: 28 AFVDNFDCK-----DVQDMPKSIL--------SKEEIDHIIMSKDAVSG-------TLRL 67
Query: 110 MTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
TL E+ V + ++E RINY F LM+
Sbjct: 68 FWTL-LSKQEEMVQKFVEEVL-----RINY-KF--LMSP 97
Score = 26.4 bits (57), Expect = 4.4
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 87 KQAFQVF-DKHKQGYIC---ADELRHVMTTLGERLSEDEVNEMIQEAD-INGDGRINYED 141
K VF D + C D + + LS++E++ +I D ++G R+
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSI-------LSKEEIDHIIMSKDAVSGTLRL---- 67
Query: 142 FVTLMTS 148
F TL++
Sbjct: 68 FWTLLSK 74
>2vn6_B Endoglucanase A; cell adhesion, carbohydrate metabolism,
polysaccharide degradation, hydrolase, glycosidase,
cellulose degradation; 1.49A {Clostridium
cellulolyticum} PDB: 2vn5_B
Length = 64
Score = 31.0 bits (71), Expect = 0.026
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 123 NEMIQEADINGDGRINYEDFVTL 145
+ ++ D+N D +N D L
Sbjct: 30 HAYVKNLDVNLDNEVNAFDLAIL 52
Score = 27.5 bits (62), Expect = 0.41
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 130 DINGDGRINYEDFVTL 145
D N DG ++ DF L
Sbjct: 6 DYNNDGNVDSTDFAGL 21
>2y3n_B Cellulosomal family-48 processive glycoside hydro; structrual
protein-hydrolase complex, cellulosome; 1.90A
{Bacteroides cellulosolvens}
Length = 71
Score = 31.1 bits (71), Expect = 0.026
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 117 LSEDEVNEMIQEADINGDGRINYEDFVTL 145
+ ++AD+N DG IN +D + L
Sbjct: 28 GKAIGNPGVNEKADLNNDGVINSDDAIIL 56
Score = 28.8 bits (65), Expect = 0.16
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 130 DINGDGRINYEDFVTL 145
D+NGDG IN D + L
Sbjct: 8 DLNGDGVINMADVMIL 23
>2ccl_B Endo-1,4-beta-xylanase Y; cell adhesion, cohesin/dockerin complex,
cellulosome, cohesi dockerin, scaffolding, cellulose
degradation; 2.03A {Clostridium thermocellum} SCOP:
a.139.1.1 PDB: 1ohz_B
Length = 63
Score = 30.6 bits (70), Expect = 0.030
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 118 SEDEVNEMIQEADINGDGRINYEDFVTL 145
+ ++ AD++ +G IN D + L
Sbjct: 28 AITLTDDAKARADVDKNGSINAADVLLL 55
Score = 28.7 bits (65), Expect = 0.14
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 130 DINGDGRINYEDFVTLM 146
D+NGDG IN D L
Sbjct: 6 DVNGDGTINSTDLTMLK 22
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase;
1.90A {Clostridium thermocellum} SCOP: a.102.1.2
b.1.18.2
Length = 639
Score = 32.9 bits (75), Expect = 0.031
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 69 FLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQE 128
+ +A +N E+ D + G + + +L + + + +S ++ +
Sbjct: 554 LIYALAGFVNYNSPQNEVL----YGDVNDDGKVNSTDLTLLKRYVLKAVSTLPSSKAEKN 609
Query: 129 ADINGDGRINYEDFVTL 145
AD+N DGR+N D L
Sbjct: 610 ADVNRDGRVNSSDVTIL 626
>1daq_A Endoglucanase SS, CELS; cellulose degradation, cellulosome,
calcium-binding, hydrolase; NMR {Clostridium
thermocellum} SCOP: a.139.1.1 PDB: 1dav_A
Length = 71
Score = 29.8 bits (68), Expect = 0.068
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 129 ADINGDGRINYEDFVTL 145
AD+N DGR+N D L
Sbjct: 39 ADLNEDGRVNSTDLGIL 55
Score = 29.1 bits (66), Expect = 0.12
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 130 DINGDGRINYEDFVTLM 146
D+N DG++N D V L
Sbjct: 8 DVNDDGKVNSTDAVALK 24
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 31.3 bits (70), Expect = 0.089
Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 81 DSTEEIKQAFQVFDKH--KQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRIN 138
T++ + ++F G + + + M L + + + +D++ DG ++
Sbjct: 452 VVTKDKSKYDEIFYNLAPADGKLSGSKAKTWMVGTK--LPNSVLGRIWKLSDVDRDGMLD 509
Query: 139 YEDFVTLM 146
E+F
Sbjct: 510 DEEFALAS 517
>4fl4_A Glycoside hydrolase family 9; structural genomics,
montreal-kingston bacterial structural initiative, BSGI,
dockerin; 2.80A {Clostridium thermocellum} PDB: 3p0d_A
Length = 88
Score = 30.0 bits (68), Expect = 0.095
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 129 ADINGDGRINYEDFVTL 145
AD+N DGR+N D L
Sbjct: 59 ADVNRDGRVNSSDVTIL 75
Score = 30.0 bits (68), Expect = 0.098
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 130 DINGDGRINYEDFVTLM 146
D+N DG++N D L
Sbjct: 24 DVNDDGKVNSTDLTLLK 40
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 30.3 bits (67), Expect = 0.17
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 76 KLNTPDSTEEIKQAFQVFDKHKQ-GYICADELRHVMTTLGERLSEDEVNEMIQEADINGD 134
+ N + F D+H GY+ EL + L E + D++ D
Sbjct: 147 EKNYNMYIFPVHWQFGQLDQHPIDGYLSHTELAPLRAPLIP--MEHCTTRFFETCDLDND 204
Query: 135 GRINYEDF 142
I +++
Sbjct: 205 KYIALDEW 212
Score = 27.6 bits (60), Expect = 1.3
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 17 FSFFNRQG-DGRIPIHELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLT 71
F ++ DG + EL + L P E D++ I E+
Sbjct: 161 FGQLDQHPIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAG 214
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog,
iodide ION S phasing, structural genomics; HET: PG4 PGE;
1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Length = 107
Score = 28.6 bits (64), Expect = 0.33
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 113 LGERLSEDEVNEMIQE--ADINGDGRINYED 141
L L+EDEV Q +G + +D
Sbjct: 40 LKRSLTEDEVVRAAQAILRSTDGQSPVTDDD 70
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Length = 86
Score = 27.8 bits (61), Expect = 0.52
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 74 ARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEA 129
AR L P+ +E + F +FD++ + + ++T LG+ ++ E +++EA
Sbjct: 5 ARALG-PEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEA 59
>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase
inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB:
3unw_A* 3ss3_A 3ss4_A 3ss5_A*
Length = 534
Score = 29.3 bits (65), Expect = 0.52
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 2 ADQLTEEQINDFKEAFSFFN-RQGDGRIPIHELGTVMRFLGLTPTE---AELLDLIREID 57
+ ++ + E F+ +G +IP+H+ T ++ GL ++ E +D++R
Sbjct: 57 GENKIKQGLLPSLEDLLFYTIAEGQEKIPVHKFITALKSTGLRTSDPRLKECMDMLRLTL 116
Query: 58 VNQRGT--IDFPEFLTVMARKLNTPDSTEEIKQAFQ 91
+D F + + + QAF+
Sbjct: 117 QTTSDGVMLDKDLFKKCVQ------SNIVLLTQAFR 146
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center
for structural genomics, MCSG; HET: G1P; 2.00A
{Escherichia coli} SCOP: c.108.1.2
Length = 206
Score = 28.4 bits (64), Expect = 0.64
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 28 IPIHELGTVMRFLGLTPTEAE-LLDLIREIDVNQ---RGTIDFPEFLTVMARKLNTPDST 83
+ I + + LT L + RG I F + ++ P S
Sbjct: 19 VDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALCHEMALPLSY 78
Query: 84 EEIKQAFQ 91
E+ +Q
Sbjct: 79 EQFSHGWQ 86
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Length = 611
Score = 28.9 bits (64), Expect = 0.68
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 129 ADINGDGRINYEDFVTL 145
AD+N DG+IN D L
Sbjct: 582 ADLNRDGKINSTDLTIL 598
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 28.3 bits (64), Expect = 0.82
Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 22/87 (25%)
Query: 24 GDGRIPIHELGTVMRFL----GLTPTEA----ELLDLIREIDVNQRGTIDFPEFL-TVMA 74
+ IP E G M GL P L+DL+ +D P L T +
Sbjct: 272 DNIDIPRSEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFY------KRVD-PSKLVTHVF 324
Query: 75 RKLNTPDSTEEIKQAFQVFDKHKQGYI 101
R + I++AF + + I
Sbjct: 325 RGF------DNIEKAFMLMKDKPKDLI 345
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module,
carbohydrate metabolism, cell WALL
biogenesis/degradation; 1.94A {Clostridium thermocellum
atcc 27405} PDB: 3p0d_C 2b59_B
Length = 321
Score = 28.5 bits (62), Expect = 0.95
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 127 QEADINGDGRINYEDFVTL 145
+E DIN +G IN +D + +
Sbjct: 281 EELDINRNGAINMQDIMIV 299
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 27.8 bits (61), Expect = 1.0
Identities = 12/45 (26%), Positives = 17/45 (37%)
Query: 60 QRGTIDFPEFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICAD 104
++G ID + V K + + K FQV YI A
Sbjct: 60 RKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDANTLYIFAP 104
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 28.0 bits (61), Expect = 1.3
Identities = 20/165 (12%), Positives = 42/165 (25%), Gaps = 21/165 (12%)
Query: 1 MADQLTEEQINDFKEAFSFFNRQGDGRIPIHELGTVMRFL-----GLTPTEAELLDLIRE 55
+QL E + F+ +IP+ + + ++ ++ +
Sbjct: 148 NKNQLGEWEKLYFRLTT---VEMEKNKIPVKAIQKCLSKDKDDRARISKALEKIGWPSGK 204
Query: 56 IDVNQRGTIDFPEFLTVMARKLNTPDSTEEI------------KQAFQVFDKHKQGYICA 103
D DF F L E I F+ F Q +
Sbjct: 205 NDAIDLKAFDFDTFFKFY-LALLERSEIEGIFKELSKNKGNITTVMFRDFLNDMQRHPSL 263
Query: 104 DELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
+ + T + + E G++ E + +
Sbjct: 264 HKTLFPLYTDAQCEALINDYESAVNKKGKKKGQLTKEGLLYFLMC 308
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 27.4 bits (61), Expect = 1.4
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 28 IPIHELGTVMRFLGLTPTEAE-LLDLIREIDVNQ---RGTIDFPEFLTVMARKLNTPDST 83
I ++ ++ RF + + E +LD + + G EF T ++R + +
Sbjct: 17 IHLNREESIRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKELTY 76
Query: 84 EEIKQAFQ 91
+++ A
Sbjct: 77 QQVYDALL 84
>1wlm_A Protein CGI-38; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Mus
musculus} SCOP: a.39.1.11
Length = 151
Score = 27.1 bits (59), Expect = 1.8
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 18/99 (18%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHEL-----------GTVMRFLGLTPTEAELLDLI- 53
I +E+F F GD + E+ V +T T+ D++
Sbjct: 10 ASTDIAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKAVTGTDV---DIVF 66
Query: 54 REIDVNQRGTIDFPEFLTVM---ARKLNTPDSTEEIKQA 89
++ I++ EF + A K S EE A
Sbjct: 67 SKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFDA 105
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF
proteins, ssgcid, STRU genomics; NMR {Mycobacterium
smegmatis str}
Length = 112
Score = 26.7 bits (59), Expect = 2.0
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 113 LGERLSEDEVNEMIQEADINGDGRINYED 141
L RL+ DE+ + ++ + ++ D
Sbjct: 37 LTRRLTNDEIKAIAED--LEKRAHFDHID 63
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.0 bits (60), Expect = 2.6
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 22/89 (24%)
Query: 34 GTVMRFLGLTPTEAELLDLIREIDVNQRG-TI---------DFPEFLTVMAR-KLNTPDS 82
G + G + + + LD ++ TI F + + +A K P +
Sbjct: 272 GVLG-LFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKA 330
Query: 83 T----------EEIKQAFQVFDKHKQGYI 101
+ K+ +V + + G I
Sbjct: 331 AKMLITKTVSINDEKELLKVLREKEHGEI 359
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide
reductase, oxidoreductase, DNA replication, iron,
DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax}
Length = 311
Score = 26.7 bits (59), Expect = 2.9
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 100 YICADELRH------VMTTLGERLSEDEVNEMIQEA 129
I DE H + + L +L E+ V +++EA
Sbjct: 220 LISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEA 255
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding,
HRRM2, oxidoreductase; 2.10A {Homo sapiens}
Length = 286
Score = 26.7 bits (59), Expect = 3.2
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 6/36 (16%)
Query: 100 YICADELRH------VMTTLGERLSEDEVNEMIQEA 129
I DE H + L + SE+ V E+I A
Sbjct: 197 LISRDEGLHCDFACLMFKHLVHKPSEERVREIIINA 232
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 26.7 bits (60), Expect = 3.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 114 GERLSEDEVNEMIQEAD 130
RLS++++ M+QEA+
Sbjct: 507 KGRLSKEDIERMVQEAE 523
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin,
halogenase, biosynthetic protein; HET: DSU AKG; 1.60A
{Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A*
2fcv_A*
Length = 313
Score = 26.6 bits (58), Expect = 3.5
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 15/49 (30%)
Query: 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADI 131
T E + +F K G+I + S +E+ E + +
Sbjct: 11 TAEQRASF-----EKNGFIGPFDA----------YSPEEMKETWKRTRL 44
>2kvc_A Putative uncharacterized protein; structural genomics, seattle
structural genomi for infectious disease, ssgcid,
unknown function; NMR {Mycobacterium tuberculosis}
Length = 103
Score = 25.5 bits (56), Expect = 4.2
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 113 LGERLSEDEVNEMIQEADINGDGRINYED 141
L RLS DEV + E + G + D
Sbjct: 35 LCRRLSHDEVKAVANE--LMRLGDFDQID 61
>2jrf_A Tubulin polymerization-promoting protein family member 3;
solution structure, structural genomics, PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 184
Score = 25.9 bits (56), Expect = 4.3
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 18/99 (18%)
Query: 6 TEEQINDFKEAFSFFNRQGDGRIPIHEL-----------GTVMRFLGLTPTEAELLDLI- 53
I +E+F F GD + E+ V +T T+ D++
Sbjct: 3 ASTDIAGLEESFRKFAIHGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDV---DIVF 59
Query: 54 REIDVNQRGTIDFPEF---LTVMARKLNTPDSTEEIKQA 89
++ I++ EF L +A K S EE A
Sbjct: 60 SKVKGKSARVINYEEFKKALEELATKRFKGKSKEEAFDA 98
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb
PY03671, S genomics consortium, SGC, oxidoreductase;
2.70A {Plasmodium yoelii yoelii}
Length = 349
Score = 26.3 bits (58), Expect = 4.8
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 100 YICADELRH------VMTTLGERLSEDEVNEMIQEA 129
I DE H + + L +L E+ V +++EA
Sbjct: 221 LISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEA 256
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 25.7 bits (57), Expect = 5.7
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 117 LSEDEVNEMIQEADINGD 134
L+EDE+ +M+++A+ N +
Sbjct: 119 LNEDEIQKMVRDAEANAE 136
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 25.7 bits (57), Expect = 6.9
Identities = 7/18 (38%), Positives = 15/18 (83%)
Query: 117 LSEDEVNEMIQEADINGD 134
L+EDE+ +M+++A+ N +
Sbjct: 507 LNEDEIQKMVRDAEANAE 524
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded
beta-helix, structural GENO structural genomics
consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo
sapiens} SCOP: b.82.2.9
Length = 308
Score = 25.6 bits (56), Expect = 7.2
Identities = 5/48 (10%), Positives = 16/48 (33%), Gaps = 15/48 (31%)
Query: 83 TEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEAD 130
T E ++ + + G++ L + + ++ E +
Sbjct: 24 TLEQRKFY-----EENGFLVIKNL----------VPDADIQRFRNEFE 56
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 25.6 bits (57), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 117 LSEDEVNEMIQEADINGD 134
LSE+E+ MI+EA+ N +
Sbjct: 476 LSEEEIQRMIKEAEENAE 493
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1;
ribonucleotide reductase, oxidoreductase; 2.80A
{Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Length = 419
Score = 25.7 bits (56), Expect = 7.4
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 100 YICADELRH------VMTTLGERLSEDEVNEMIQEA 129
IC DE H + L + V +++ EA
Sbjct: 288 LICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEA 323
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 25.3 bits (56), Expect = 7.5
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 117 LSEDEVNEMIQEADINGD 134
LS+D++ M++ A+ +
Sbjct: 138 LSKDDIENMVKNAEKYAE 155
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 25.4 bits (55), Expect = 8.3
Identities = 14/118 (11%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 31 HELGTVMRFLGLTPTEAELLDLIREIDVNQRGTIDFPEFLTVMARKLNTPDSTEEIKQAF 90
H L + + + L + ++ ++ P + + L
Sbjct: 91 HNLKQNDQPMDILQIINCLTTIYDRLEQEHNNLVNVPLCVDMCLNWL------------L 138
Query: 91 QVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQEADINGDGRINYEDFVTLMTS 148
V+D + G I + + +L + ED+ + ++ + G + L+
Sbjct: 139 NVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVA-SSTGFCDQRRLGLLLHD 195
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 24.9 bits (55), Expect = 9.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 116 RLSEDEVNEMIQEAD 130
RLS +++ MI +AD
Sbjct: 118 RLSPEDIERMINDAD 132
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly,
membrane coat, nucleocytoplasmic transport,
beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB:
3h7n_A 3hxr_A
Length = 729
Score = 25.5 bits (55), Expect = 9.2
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 68 EFLTVMARKLNTPDSTEEIKQAFQVFDKHKQGYICADELRHVMTTLGERLSEDEVNEMIQ 127
+FL ++ +L +T E + +F + L+ + L +N++I
Sbjct: 531 KFLDIITGELPDSMTTVE--KFTDIFKNCLENQFEITNLKILFDELNSFDIPVVLNDLIN 588
Query: 128 EADINGDGRINYEDFVTLMT 147
+ G +DF++ +
Sbjct: 589 --NQMKPGIFWKKDFISAIK 606
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 25.2 bits (55), Expect = 9.3
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 61 RGTIDFPEFLTVMARKLNTPDSTEEIKQAFQ 91
+G I EF + + S ++I A+
Sbjct: 77 KGLITPAEFRDGIREMMGKMVSDKQIDAAWN 107
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 24.9 bits (55), Expect = 9.4
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 116 RLSEDEVNEMIQEAD 130
RL++ +++ M+ EA
Sbjct: 118 RLTQSDIDRMVHEAK 132
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 24.8 bits (55), Expect = 9.7
Identities = 6/15 (40%), Positives = 14/15 (93%)
Query: 116 RLSEDEVNEMIQEAD 130
RL+++E++ M++EA+
Sbjct: 118 RLTQEEIDRMVEEAE 132
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 24.9 bits (55), Expect = 9.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 117 LSEDEVNEMIQEADINGD 134
LS+D++ MI+EA+ N
Sbjct: 118 LSKDQIENMIKEAEKNAA 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.386
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,428,680
Number of extensions: 147413
Number of successful extensions: 1939
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 479
Length of query: 148
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 63
Effective length of database: 4,328,508
Effective search space: 272696004
Effective search space used: 272696004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)