BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12852
(1102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 132/514 (25%), Positives = 220/514 (42%), Gaps = 51/514 (9%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
+T V+ AQ++ +N+ A +L G KGD +AL+ N E+ ++ GAAKLG ++ I
Sbjct: 39 STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
NT L + +S SK +I A P I+AIR D + D D +L++ +
Sbjct: 99 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQ-ADPPGTVTDWIGAD--SLAERL 155
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
++ A E P+ D+L +YTSGTTG PK + + V + + D
Sbjct: 156 RSAAADE--PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR 213
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL 740
+ LPM+H A L I + + G ++ +F A+ + + + G + + ++
Sbjct: 214 LLLPLPMFHVA-ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFM 272
Query: 741 LASKE-SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE---GNANLVNMD 796
E +E D + G + K +++ +++ Y TE G L++ D
Sbjct: 273 RQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAKNIE-VVQGYALTESCGGGTLLLSED 331
Query: 797 --NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ 854
G+ G T VA+ D V IR+ G + IK
Sbjct: 332 ALRKAGSAG-----RATMFTDVAVRGDDGV----IREHGEGEVV-------------IKS 369
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
+ ++ ++ E+ + +N +F +GD+ +D+ GYLY KDR D G
Sbjct: 370 DILLKEYW---NRPEATRDAFDN------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGG 420
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA---IVDTSNQVDLKLLVQGLD 971
ENV E+E+ I +E V G+ D + G IA +V N+V + +V+
Sbjct: 421 ENVYPAEIESVIIGVPGVSEVAVIGLP----DEKWGEIAAAIVVADQNEVSEQQIVEYCG 476
Query: 972 ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L Y P V +AI T KI K L+ +
Sbjct: 477 TRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 131 KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190
+ +V R A D T Q++ +N+ A +L G KGD +AL+ N E+ +
Sbjct: 25 RATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 84
Query: 191 WLGAAKLGVIS 201
+ GAAKLG ++
Sbjct: 85 FYGAAKLGAVA 95
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 6/219 (2%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
+T V+ AQ++ +N+ A +L G KGD +AL+ N E+ ++ GAAKLG ++ I
Sbjct: 25 STDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
NT L + +S SK +I A P I+AIR D + D D +L++ +
Sbjct: 85 NTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQ-ADPPGTVTDWIGAD--SLAERL 141
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
++ A E P+ D+L +YTSGTTG PK + + V + + D
Sbjct: 142 RSAAADE--PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDR 199
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYF 719
+ LPM+H A L I + + G ++ +F A+ +
Sbjct: 200 LLLPLPMFHVA-ALTTVIFSAMRGVTLISMPQFDATKVW 237
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 131 KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190
+ +V R A D T Q++ +N+ A +L G KGD +AL+ N E+ +
Sbjct: 11 RATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCL 70
Query: 191 WLGAAKLGVIS 201
+ GAAKLG ++
Sbjct: 71 FYGAAKLGAVA 81
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/452 (23%), Positives = 186/452 (41%), Gaps = 55/452 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A ++ + ++A L G ++GDV+ L + PE+V +LGA+ G I N
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAI-RESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
L ++K +I A YY +++ RES DVK+ +D + S+L T
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARES--DVKVMCVDSAPDGCLHFSEL--TQADEN 168
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL------LSLGSGDVI 681
P + D + Y+SGTTGLPK ++ + ++ V + + L S DVI
Sbjct: 169 EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLIT--SVAQQVDGDNPNLYFHSEDVI 226
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL 741
LPM+H + L +G+ I I KF + KYK + + + +
Sbjct: 227 LCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIA 286
Query: 742 ASKESEAD--YSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV------ 793
S + + S +++K G + ++ +F + + YG TE L
Sbjct: 287 KSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFA 346
Query: 794 --NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIR--DPKTGLCIRCKYNQPGMII 849
D GA G + V N ++ DP+TG + NQPG I
Sbjct: 347 KEPFDIKPGACGTV------------------VRNAEMKIVDPETGASL--PRNQPGEIC 386
Query: 850 GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDT 909
Q GY + E+ + ++ + + +GD+ +D+ L+ DR +
Sbjct: 387 IRGDQI-----MKGYLNDPEATSRTIDK-----EGWLHTGDIGYIDDDDELFIVDRLKEL 436
Query: 910 YRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
++KG V+ E+EA + + ++ V G+K
Sbjct: 437 IKYKGFQVAPAELEALLIAHPEISDAAVVGLK 468
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYY--FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALM 180
N L S +++ + PC + +T ++ + ++A L G ++GDV+ L
Sbjct: 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLF 80
Query: 181 CENRPEYVGVWLGAAKLGVISKLSN 205
+ PE+V +LGA+ G I +N
Sbjct: 81 LPSSPEFVLAFLGASHRGAIITAAN 105
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 108/498 (21%), Positives = 190/498 (38%), Gaps = 37/498 (7%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + ++A +L G + GD +A E E + ++L + G + +NT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + I+ + K ++ I AI + L + + L + + A+
Sbjct: 92 LDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAAGASEAFATID 151
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ ++ L +YTSGTTG K A + + + DV+ + LP+Y
Sbjct: 152 RGADDLAA-----ILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIY 206
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
H+ G + + L S KF A+ G+ R L + + ++
Sbjct: 207 HTHGLFVASNVTLFARGSXIFLPKFDPDKILDLXARATVLXGVPT-FYTRLLQSPRLTKE 265
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQT---IIEFYGATEGNANLVNMDNTEGAVGII 805
H + + G + A + + +T ++E YG TE N N N + + G +
Sbjct: 266 TTGHXRLFISG---SAPLLADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAV 322
Query: 806 PTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865
LP + + DP+TG + P IG I+ P+ F GY
Sbjct: 323 GPALPGV-------------SARVTDPETGKEL------PRGDIGXIEVKGPNV-FKGYW 362
Query: 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925
E K + D +F++GD+ +DE GY++ R D G NV E+E+
Sbjct: 363 RXPEKTKSEFRD-----DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESE 417
Query: 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRI 985
I E V GV D + + D +D ++ GLD L + P V
Sbjct: 418 IDAXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKXPKKVIF 477
Query: 986 MKAIEMTGTFKIKKIQLQ 1003
+ + K++K L+
Sbjct: 478 VDDLPRNTXGKVQKNVLR 495
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 120/517 (23%), Positives = 209/517 (40%), Gaps = 50/517 (9%)
Query: 514 YSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSI 573
YS+K A G KGD + L ++R ++ LG KLG I+ LK + +V+ I
Sbjct: 95 YSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRI 154
Query: 574 STVKSKAII-VSALYYPE-IEAIRESIPDVKLFLLDETKPDLPNLSDLMK----TTPASE 627
K I+ ++ PE ++ D+ L L D K ++P E
Sbjct: 155 EKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214
Query: 628 VKPSEPLQTS--DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
+P+ + T D L ++SGT G PK N L K+ ++ + Y
Sbjct: 215 -RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVA 273
Query: 686 PMYHSA---GGLIGTIPALILGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGEMCRYL 740
G L G I G ++ + +F A N +KY + R+L
Sbjct: 274 DSGWGKCVWGKLYG---QWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFL 330
Query: 741 LASKESEADYSHQVVK---MIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN 797
+ KE + Y+ +K + G + +++ +F++ F ++E +G TE +
Sbjct: 331 I--KEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLE-FTGIKLMEGFGQTETVVTIATFPW 387
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
E G I P + + +L++ RD + C+ + G I+ + P
Sbjct: 388 MEPKPGSIGKPTPGY-------KIELMD----RDGRL-----CEVGEEGEIVINTMEGKP 431
Query: 858 SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
F Y E ++ D Y+ +GDM MDE GYL+F R D + G V
Sbjct: 432 VGLFVHYGKDPERTEETWH------DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKV 485
Query: 918 STMEVEATISKYLPYTEFTVYGV--KVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLP 975
EVE+ + ++ E + GV V +A ++ D + LK +Q N+
Sbjct: 486 GPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVT 545
Query: 976 A-YARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQ 1011
A Y P + + + T + KI++++++++ D SQ
Sbjct: 546 APYKYPRIIEFVPELPKTISGKIRRVEIRDK--DQSQ 580
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 144 YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS-- 201
Y ++ +T K + YS+K A G KGD + L ++R ++ LG KLG I+
Sbjct: 81 YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVP 140
Query: 202 -----KLSNVVWLAQLLGKKMV 218
K ++V+ + G KM+
Sbjct: 141 ATHMLKTRDIVYRIEKAGLKMI 162
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 184/443 (41%), Gaps = 57/443 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 54 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L++S++ + + VS +I +++ +P ++ ++ ++K D M T S +
Sbjct: 114 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS-MYTFVTSHL 172
Query: 629 KPS--------EPLQTSDSL-LYIYTSGTTGLPKAAIMPN------FKVLLGGQVGKHLL 673
P E ++ L + +SG+TGLPK +P+ F G ++
Sbjct: 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII 232
Query: 674 SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
I + +P +H G+ T+ LI G + + +F + R YK + + +
Sbjct: 233 ---PDTAILSVVPFHHGF-GMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLV 288
Query: 734 GEMCRYLLASK---ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790
+ + S + + H++ G + ++ KRFH+ I + YG TE +
Sbjct: 289 PTLFSFFAKSTLIDKYDLSNLHEIASG-GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS 347
Query: 791 NLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPG 846
++ D+ GAVG ++P F V DL + + + G LC+R
Sbjct: 348 AILITPEGDDKPGAVG---KVVPFFEAKVV----DLDTGKTLGVNQRGELCVRGP----- 395
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
MI+ GY + E+ +++ D + SGD+ DE + + DR
Sbjct: 396 MIMS------------GYVNNPEATNALIDK-----DGWLHSGDIAYWDEDEHFFIVDRL 438
Query: 907 GDTYRWKGENVSTMEVEATISKY 929
++KG V+ E+E+ + ++
Sbjct: 439 KSLIKYKGYQVAPAELESILLQH 461
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 184/443 (41%), Gaps = 57/443 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 54 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L++S++ + + VS +I +++ +P ++ ++ ++K D M T S +
Sbjct: 114 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS-MYTFVTSHL 172
Query: 629 KPS--------EPLQTSDSL-LYIYTSGTTGLPKAAIMPN------FKVLLGGQVGKHLL 673
P E ++ L + +SG+TGLPK +P+ F G ++
Sbjct: 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII 232
Query: 674 SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
I + +P +H G+ T+ LI G + + +F + R YK + + +
Sbjct: 233 ---PDTAILSVVPFHHGF-GMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLV 288
Query: 734 GEMCRYLLASK---ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790
+ + S + + H++ G + ++ KRFH+ I + YG TE +
Sbjct: 289 PTLFSFFAKSTLIDKYDLSNLHEIASG-GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS 347
Query: 791 NLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPG 846
++ D+ GAVG ++P F V DL + + + G LC+R
Sbjct: 348 AILITPEGDDKPGAVG---KVVPFFEAKVV----DLDTGKTLGVNQRGELCVRGP----- 395
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
MI+ GY + E+ +++ D + SGD+ DE + + DR
Sbjct: 396 MIMS------------GYVNNPEATNALIDK-----DGWLHSGDIAYWDEDEHFFIVDRL 438
Query: 907 GDTYRWKGENVSTMEVEATISKY 929
++KG V+ E+E+ + ++
Sbjct: 439 KSLIKYKGYQVAPAELESILLQH 461
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/468 (21%), Positives = 197/468 (42%), Gaps = 50/468 (10%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A T V A+ E S + + LQ+ G +AL EN E+ + +GV A
Sbjct: 47 AVTGVDYSYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAP 106
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDL 619
N + LVHS+ K + S ++ +++++ +K ++ ++K D L
Sbjct: 107 TNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCL 166
Query: 620 ----MKTTP----ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH 671
+ TP AS K E + L + +SG+TGLPK + + ++ +
Sbjct: 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226
Query: 672 LL---SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728
+ + G + +P +H G+ T+ LI G + + TKF + + YKC
Sbjct: 227 PIYGNQVSPGTAVLTVVPFHHGF-GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCT 285
Query: 729 AGIYIGEMCRYLLASK-ESEADYSHQV-VKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786
+ I + + L S+ ++ D S+ V + G + ++ +RF++ + + YG T
Sbjct: 286 SVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLT 345
Query: 787 EGNANLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKY 842
E + ++ D+ GA G ++P F V DL + + + G +C++
Sbjct: 346 ETTSAIIITPEGDDKPGASG---KVVPLFKAKV----IDLDTKKSLGPNRRGEVCVK--- 395
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G ++ GY + E+ K++++ + + +GD+ DE + +
Sbjct: 396 ---GPML-----------MKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFI 436
Query: 903 KDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK---VGDLDG 947
DR ++KG V E+E+ + ++ + V GV G+L G
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG 484
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/443 (21%), Positives = 184/443 (41%), Gaps = 57/443 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 59 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 118
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L++S++ + + VS +I +++ +P ++ ++ ++K D M T S +
Sbjct: 119 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS-MYTFVTSHL 177
Query: 629 KPS--------EPLQTSDSL-LYIYTSGTTGLPKAAIMPN------FKVLLGGQVGKHLL 673
P E ++ L + +SG+TGLPK +P+ F G ++
Sbjct: 178 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII 237
Query: 674 SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
I + +P +H G+ T+ LI G + + +F + R YK + + +
Sbjct: 238 ---PDTAILSVVPFHHGF-GMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLV 293
Query: 734 GEMCRYLLASK---ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790
+ + S + + H++ G + ++ KRFH+ I + YG TE +
Sbjct: 294 PTLFSFFAKSTLIDKYDLSNLHEIASG-GAPLSKEVGEAVAKRFHLPGIRQGYGLTETTS 352
Query: 791 NLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPG 846
++ D+ GAVG ++P F V DL + + + G LC+R
Sbjct: 353 AILITPEGDDKPGAVG---KVVPFFEAKVV----DLDTGKTLGVNQRGELCVRGP----- 400
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
MI+ GY + E+ +++ D + SGD+ DE + + DR
Sbjct: 401 MIMS------------GYVNNPEATNALIDK-----DGWLHSGDIAYWDEDEHFFIVDRL 443
Query: 907 GDTYRWKGENVSTMEVEATISKY 929
++KG V+ E+E+ + ++
Sbjct: 444 KSLIKYKGYQVAPAELESILLQH 466
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/446 (21%), Positives = 183/446 (41%), Gaps = 63/446 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 59 AEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNERE 118
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L++S++ + + VS +I +++ +P ++ ++ ++K D M T S +
Sbjct: 119 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQS-MYTFVTSHL 177
Query: 629 KPS--------EPLQTSDSL-LYIYTSGTTGLPKAAIMPNFKV----------LLGGQVG 669
P E ++ L + +SG+TGLPK +P+ + + G Q+
Sbjct: 178 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIA 237
Query: 670 KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA 729
I + +P +H G+ T+ LI G + + +F + R YK +
Sbjct: 238 PD-------TAILSVVPFHHGF-GMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKIQS 289
Query: 730 GIYIGEMCRYLLASK---ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786
+ + + +L S + + H++ G + ++ KRFH+ I + YG T
Sbjct: 290 ALLVPTLFSFLAKSTLIDKYDLSNLHEIASG-GAPLSKEVGEAVAKRFHLPGIRQGYGLT 348
Query: 787 EGNANLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843
E + ++ D+ GAVG ++P F + D TG + N
Sbjct: 349 ETTSAILITPKGDDKPGAVG---KVVPFF-------------EAKVVDLDTGKTLGV--N 390
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
Q GE+ P GY + E+ +++ D + SGD+ DE + +
Sbjct: 391 QR----GELSVRGPMI-MSGYVNNPEATNALIDK-----DGWLHSGDIAYWDEDEHFFIV 440
Query: 904 DRTGDTYRWKGENVSTMEVEATISKY 929
DR ++KG V+ E+E+ + ++
Sbjct: 441 DRLKSLIKYKGCQVAPAELESILLQH 466
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 102/468 (21%), Positives = 197/468 (42%), Gaps = 50/468 (10%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A T V A+ E S + + LQ+ G +AL EN E+ + +GV A
Sbjct: 47 AVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAP 106
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDL 619
N + LVHS+ K + S ++ +++++ +K ++ ++K D L
Sbjct: 107 TNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCL 166
Query: 620 ----MKTTP----ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH 671
+ TP AS K E + L + +SG+TGLPK + + ++ +
Sbjct: 167 DTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226
Query: 672 LL---SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728
+ + G + +P +H G+ T+ LI G + + TKF + + YKC
Sbjct: 227 PIYGNQVSPGTAVLTVVPFHHGF-GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCT 285
Query: 729 AGIYIGEMCRYLLASK-ESEADYSHQV-VKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786
+ I + + L S+ ++ D S+ V + G + ++ +RF++ + + YG T
Sbjct: 286 SVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLT 345
Query: 787 EGNANLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKY 842
E + ++ D+ GA G ++P F V DL + + + G +C++
Sbjct: 346 ETTSAIIITPEGDDKPGASG---KVVPLFKAKV----IDLDTKKSLGPNRRGEVCVK--- 395
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G ++ GY + E+ K++++ + + +GD+ DE + +
Sbjct: 396 ---GPML-----------MKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFI 436
Query: 903 KDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK---VGDLDG 947
DR ++KG V E+E+ + ++ + V GV G+L G
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG 484
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/468 (21%), Positives = 196/468 (41%), Gaps = 50/468 (10%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A T V A+ E S + + LQ+ G +AL EN E+ + +GV A
Sbjct: 47 AVTGVDYSYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAP 106
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDL 619
N + LVHS+ K + S ++ +++++ +K ++ ++K D L
Sbjct: 107 TNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCL 166
Query: 620 ----MKTTP----ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH 671
+ TP AS K E + L + +SG+TGLPK + + ++ +
Sbjct: 167 DTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226
Query: 672 LL---SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728
+ + G + +P +H G+ T+ LI G + + TKF + + YKC
Sbjct: 227 PIYGNQVSPGTAVLTVVPFHHGF-GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCT 285
Query: 729 AGIYIGEMCRYLLASK-ESEADYSHQV-VKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786
I + + L S+ ++ D S+ V + G + ++ +RF++ + + YG T
Sbjct: 286 NVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLT 345
Query: 787 EGNANLV---NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKY 842
E + ++ D+ GA G ++P F V DL + + + G +C++
Sbjct: 346 ETTSAIIITPEGDDKPGASG---KVVPLFKAKV----IDLDTKKSLGPNRRGEVCVK--- 395
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G ++ GY + E+ K++++ + + +GD+ DE + +
Sbjct: 396 ---GPML-----------MKGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFI 436
Query: 903 KDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK---VGDLDG 947
DR ++KG V E+E+ + ++ + V GV G+L G
Sbjct: 437 VDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPG 484
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 105/504 (20%), Positives = 201/504 (39%), Gaps = 45/504 (8%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
+I E + K+A + G +KG+ + + N +YV ++ IN K L
Sbjct: 57 EICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKSFEL 116
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDL-MKTTPASEV 628
H ++ ++ ++V + Y + + E ++F++ L + D + +V
Sbjct: 117 EHILNDSEATTLVVHSXLYENFKPVLEKTGVERVFVVGGEVNSLSEVXDSGSEDFENVKV 176
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
P E D L YT GTTG PK + +F + L D I C P +
Sbjct: 177 NPEE-----DVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXF 231
Query: 689 HSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
HSA GL+ + +G+ + F+ + KYK + L+ + ES
Sbjct: 232 HSAEFGLVNL--XVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESS 289
Query: 748 -ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN---MDNTEGAVG 803
Y +K+ G W V V+ +++ N L + TE A
Sbjct: 290 NKTYDWSYLKVFATGA----WP--VAPALVEKLLKLAAEKCNNPRLRHNQIWGXTE-ACP 342
Query: 804 IIPTLLPTFLH-------PVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856
+ T P L P + I+ ++ + R+ G P + G K+
Sbjct: 343 XVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREK 402
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
++ + Y +K G K+F +GD+ +DE G+L+F+DR + ++KG
Sbjct: 403 ENQECWWYDEK--------------GRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYT 448
Query: 917 VSTMEVEATISKYLPYTEFTVYGV---KVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDAN 973
++ E+EA + K+ + V G + G++ +A ++ + +VD + +++ +
Sbjct: 449 IAPFELEALLXKHEAVXDVAVIGKPDEEAGEVP-KAFIVLKPEYRGKVDEEDIIEWVRER 507
Query: 974 LPAYARPLFVRIMKAIEMTGTFKI 997
+ Y R V ++ + T + K+
Sbjct: 508 ISGYKRVREVEFVEELPRTASGKL 531
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 102/449 (22%), Positives = 176/449 (39%), Gaps = 47/449 (10%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
A ++ A++ +A L DG + +A++ N + V L +LG + AL+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
N LK L I + A ++ A+ +AI +S ++ L DL +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFLG----DLVRDGEPY 139
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK-----VLLGGQVGKHLLSL 675
P E EP Q + YTSGTTGLPKAAI+P + + QVG L
Sbjct: 140 SYGPPIEDPQREPAQPA---FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRH 193
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
G +V+ +P+YH G + AL L + + +F + + + + + ++
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTS-LFATP 252
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRG----DIWAKFVKRFHVQTIIEFYGATEGNAN 791
LA+ + A S ++ + V G D + V + + YG TE +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS 312
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L G + P F V I++ ++ + + + G I
Sbjct: 313 LYMRQPKTGT-----EMAPGFFSEVRIVRIGGGVDEIVANGEEGELI------------- 354
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
+ SD + F GY ++ E+ + L+ D ++ + D+ V G + R D
Sbjct: 355 VAASDSA--FVGYLNQPEATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GEN+ E+E + TE V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 176/449 (39%), Gaps = 47/449 (10%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
A ++ A++ +A L DG + +A++ N + V L +LG + AL+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
N LK L I + A ++ A+ +AI +S ++ L DL +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFLG----DLVRDGEPY 139
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK-----VLLGGQVGKHLLSL 675
P E EP Q + YTSGTTGLPKAAI+P + + QVG L
Sbjct: 140 SYGPPIEDPQREPAQPA---FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRH 193
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
G +V+ +P+YH G + AL L + + +F + + + + + ++
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS-LFATP 252
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRG----DIWAKFVKRFHVQTIIEFYGATEGNAN 791
LA+ + A S ++ + V G D + V + + YG TE +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS 312
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L G + P F V I++ ++ + + + G I
Sbjct: 313 LYMRQPKTGT-----EMAPGFFSEVRIVRIGGGVDEIVANGEEGELI------------- 354
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
+ SD + F GY ++ ++ + L+ D ++ + D+ V G + R D
Sbjct: 355 VAASDSA--FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GEN+ E+E + TE V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 102/479 (21%), Positives = 176/479 (36%), Gaps = 39/479 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + ++A +L G + GD +A E E + ++L + G + +NT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + I+ + ++ P +I ++ PD L +
Sbjct: 92 LDYFITDAEPXIVVCD----PSXRDGIAAIAAXVGATVETLGPD--GRGSLTDAAAGASE 145
Query: 629 KPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPM 687
+ + +D L I YTSGTTG A++ + + DV+ + LP+
Sbjct: 146 AFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPI 205
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
YH+ G + + L S+ F A+ G+ R L + + +
Sbjct: 206 YHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPT-FYTRLLQSPRLTX 264
Query: 748 ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT---IIEFYGATEGNANLVNMDNTEGAVGI 804
H + + G + A + + T ++E YG TE N N N + + G
Sbjct: 265 ETTGHMRLFISG---SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGA 321
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+ LP + + DP+TG + P IG I+ P+ F GY
Sbjct: 322 VGPALPGV-------------SARVTDPETGXEL------PRGDIGMIEVXGPNV-FXGY 361
Query: 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
E + D +F++GD+ +DE GY++ R D G NV E+E+
Sbjct: 362 WRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIES 416
Query: 925 TISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFV 983
I E V GV D + + D +D ++ GLD L + P V
Sbjct: 417 EIDAMPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQLAXFXMPXXV 475
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 176/449 (39%), Gaps = 47/449 (10%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
A ++ A++ +A L DG + +A++ N + V L +LG + AL+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
N LK L I + A ++ A+ +AI +S ++ L DL +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFLG----DLVRDGEPY 139
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK-----VLLGGQVGKHLLSL 675
P E EP Q + YTSGTTGLPKAAI+P + + QVG L
Sbjct: 140 SYGPPIEDPQREPAQPA---FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRH 193
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
G +V+ +P+YH G + AL L + + +F + + + + + ++
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS-LFATP 252
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRG----DIWAKFVKRFHVQTIIEFYGATEGNAN 791
LA+ + A S ++ + V G D + V + + YG TE +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS 312
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L G + P F V I++ ++ + + + G I
Sbjct: 313 LYMRQPKTGT-----EMAPGFFSEVRIVRIGGGVDEIVANGEEGELI------------- 354
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
+ SD + F GY ++ ++ + L+ D ++ + D+ V G + R D
Sbjct: 355 VAASDSA--FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVPDMII 406
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GEN+ E+E + TE V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 176/449 (39%), Gaps = 47/449 (10%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
A ++ A++ +A L DG + +A++ N + V L +LG + AL+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
N LK L I + A ++ A+ +AI +S ++ L DL +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFLG----DLVRDGEPY 139
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK-----VLLGGQVGKHLLSL 675
P E EP Q + YTSGTTGLPKAAI+P + + QVG L
Sbjct: 140 SYGPPIEDPQREPAQPA---FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRH 193
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
G +V+ +P+YH G + AL L + + +F + + + + + ++
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS-LFATP 252
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRG----DIWAKFVKRFHVQTIIEFYGATEGNAN 791
LA+ + A S ++ + V G D + V + + YG TE +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNAYGTTEAMNS 312
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L G + P F V I++ ++ + + + G I
Sbjct: 313 LYMRQPKTGT-----EMAPGFFSEVRIVRIGGGVDEIVANGEEGELI------------- 354
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
+ SD + F GY ++ ++ + L+ D ++ + D+ V G + R D
Sbjct: 355 VAASDSA--FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GEN+ E+E + TE V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 101/449 (22%), Positives = 176/449 (39%), Gaps = 47/449 (10%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
A ++ A++ +A L DG + +A++ N + V L +LG + AL+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
N LK L I + A ++ A+ +AI +S ++ L DL +
Sbjct: 85 NPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFLG----DLVRDGEPY 139
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK-----VLLGGQVGKHLLSL 675
P E EP Q + YTSGTTGLPKAAI+P + + QVG L
Sbjct: 140 SYGPPIEDPQREPAQPA---FIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVG---LRH 193
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
G +V+ +P+YH G + AL L + + +F + + + + + ++
Sbjct: 194 GRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS-LFATP 252
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRG----DIWAKFVKRFHVQTIIEFYGATEGNAN 791
LA+ + A S ++ + V G D + V + + YG TE +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNS 312
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L G + P F V I++ ++ + + + G I
Sbjct: 313 LYMRQPKTGT-----EMAPGFFSEVRIVRIGGGVDEIVANGEEGELI------------- 354
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
+ SD + F GY ++ ++ + L+ D ++ + D+ V G + R D
Sbjct: 355 VAASDSA--FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GEN+ E+E + TE V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 103/449 (22%), Positives = 175/449 (38%), Gaps = 47/449 (10%)
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI 560
A ++ A++ +A L DG + +A++ N + V L +LG + AL+
Sbjct: 25 ARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84
Query: 561 NTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM 620
N LK L I + A ++ A+ +AI +S ++ L DL +
Sbjct: 85 NPRLKSAELAELIKRGEXTAAVI-AVGRQVADAIFQSGSGARIIFLG----DLVRDGEPY 139
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPN----FKVLLGG-QVGKHLLSL 675
P E EP Q + YTSGTTGLPKAAI+P +VL QVG L
Sbjct: 140 SYGPPIEDPQREPAQPA---FIFYTSGTTGLPKAAIIPQRAAESRVLFXSTQVG---LRH 193
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
G +V+ P+YH G + AL L + + +F + + + + + ++
Sbjct: 194 GRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTS-LFATP 252
Query: 736 MCRYLLASKESEADYSHQVVKMIGVGMRG----DIWAKFVKRFHVQTIIEFYGATEGNAN 791
LA+ + A S ++ + V G D + V + + YG TE +
Sbjct: 253 THLDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNIYGTTEAXNS 312
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L G P F V I++ ++ + + + G I
Sbjct: 313 LYXRQPKTGT-----EXAPGFFSEVRIVRIGGGVDEIVANGEEGELI------------- 354
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
+ SD + F GY ++ ++ + L+ D ++ + D+ V G + R D
Sbjct: 355 VAASDSA--FVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDXII 406
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GEN+ E+E + TE V G+
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVIGL 435
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 118/524 (22%), Positives = 205/524 (39%), Gaps = 55/524 (10%)
Query: 488 QEASNARSTNDAAATTVKNLE-AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
+EA NA A + + L ++DE +N+IAR LQ G KG V+AL + E V
Sbjct: 471 KEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIG 530
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP--DVKLF 604
LG K G ++ L + IS + + + L + E++ +P LF
Sbjct: 531 ILGVLKAGAAYLPVDPKLPED----RISYMLADSAAACLLTHQEMKEQAAELPYTGTTLF 586
Query: 605 LLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL 664
+ D+T+ + + PA+ + P++P +YTSGTTG PK I + +
Sbjct: 587 IDDQTR------FEEQASDPATAIDPNDP------AYIMYTSGTTGKPKGNITTHANI-- 632
Query: 665 GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAK 724
G V KH+ + D ++ A +L A R + + D +
Sbjct: 633 QGLV-KHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLN---AARLIIADEHTLLDTER 688
Query: 725 -----YKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDI--WAKFVKRFHVQ 777
+ N + + L + E D+ + ++ G R + K ++
Sbjct: 689 LTDLILQENVNVMFATTALFNLLTDAGE-DWMKGLRCILFGGERASVPHVRKALRIMGPG 747
Query: 778 TIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
+I YG TEG T A + LP + + I +PI + +
Sbjct: 748 KLINCYGPTEG---------TVFATAHVVHDLPDSISSLPI-------GKPISNASVYIL 791
Query: 838 IRCKYNQPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMD 895
QP +GE I S+ + AD +++K +EN FKPG+ + +GD+
Sbjct: 792 NEQSQLQPFGAVGELCISGMGVSKGYVNRADL--TKEKFIENPFKPGETLYRTGDLARWL 849
Query: 896 ELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV 955
G + + R D + +G + E+E + +Y + V + G A + A +
Sbjct: 850 PDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADR--HESGDASINAYL 907
Query: 956 DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
Q+ + + L LPAY P + + +T K+ K
Sbjct: 908 VNRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNK 951
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 130 FKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 189
FK++V P+AP + +T + +++DE +N+IAR LQ G KG V+AL + E V
Sbjct: 470 FKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVI 529
Query: 190 VWLGAAKLGV 199
LG K G
Sbjct: 530 GILGVLKAGA 539
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/440 (24%), Positives = 183/440 (41%), Gaps = 35/440 (7%)
Query: 515 SNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIS 574
S +IA G + DV+ L+ N PE+V +L A+ G + N +
Sbjct: 98 SRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAK 157
Query: 575 TVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP----NLSDLMK-TTPASEVK 629
+K II A Y +I+ ++ V + + D +P ++L + TT ASEV
Sbjct: 158 ASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 217
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL--LGGQV-GKHL-LSLGSGDVIYNCL 685
S + D + Y+SGTTGLPK ++ + ++ + QV G++ L S DVI L
Sbjct: 218 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVL 277
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE 745
PM+H + L +G++I I KF + + K + + + S E
Sbjct: 278 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 337
Query: 746 SEA-DYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVG 803
+E D S +VVK + ++ +F + + YG TE L ++G
Sbjct: 338 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAM------SLG 391
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIR--DPKTGLCIRCKYNQPGMIIGEIKQSDPSRHF 861
P + V N ++ DP TG + NQPG I Q
Sbjct: 392 FAKEPFPVKSGACGTV----VRNAEMKIVDPDTGDSL--SRNQPGEICIRGHQI-----M 440
Query: 862 YGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTME 921
GY + + + ++ D + +GD+ ++D+ L+ DR + ++KG V+ E
Sbjct: 441 KGYLNNPAATAETIDK-----DGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE 495
Query: 922 VEATISKYLPYTEFTVYGVK 941
+EA + + T+ V +K
Sbjct: 496 LEALLIGHPDITDVAVVAMK 515
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 107/466 (22%), Positives = 190/466 (40%), Gaps = 56/466 (12%)
Query: 517 KIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
++A++L G +KGD +A+ PE + L +++G I +++ L I+
Sbjct: 125 QVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIND 184
Query: 576 VKSKAIIVS--------ALYYPEI--EAIRESIPDVKLFLLDETKPDLPNLS-----DLM 620
SK +I + + I +A+RE+ P V+ L+ K + P+++ DL
Sbjct: 185 GDSKVVITTDESNRGGKVIETKRIVDDALRET-PGVRHVLVYR-KTNNPSVAFHAPRDLD 242
Query: 621 KTTPASEVK---PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLG 676
T + K P P+ + D L +YTSG+TG PK LLG + ++
Sbjct: 243 WATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTH 302
Query: 677 SGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA----SNYFRDCAKYKCNAGIY 732
DV + + G L+ G + + A S Y+ ++K Y
Sbjct: 303 QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ-FY 361
Query: 733 IGEMCRYLLASK-----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ--TIIEFYGA 785
+ LL E+ + S + + +G + ++W + ++ I++ Y
Sbjct: 362 VAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQ 421
Query: 786 TEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQP 845
TE ++LV T A G+ P + P D V + DP TG + + +
Sbjct: 422 TESGSHLV----TPLAGGVTPMKPGSASFP--FFGIDAV----VLDPNTGEELNTSHAE- 470
Query: 846 GMIIGEIKQSDPS--RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
G++ +K + PS R + ++ + L+ P Y+ +GD D+ GY++
Sbjct: 471 GVL--AVKAAWPSFARTIW------KNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWIL 522
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRA 949
R D G +ST E+EA I + E V G DL G+A
Sbjct: 523 GRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFN-DDLTGQA 567
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 96/438 (21%), Positives = 161/438 (36%), Gaps = 57/438 (13%)
Query: 515 SNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIS 574
+ ++A L DG GD +A++ +N E + + A +G I +N L + +
Sbjct: 41 AERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLG 100
Query: 575 TVKSKAIIVSALYYPEIEAIRESIPDVK--LFLLDETKPDLPNLSDLMKTTPASEVKPSE 632
++ Y + + S+ VK + D + P P DL TP S +
Sbjct: 101 DGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAP-FKDLASDTPFS----AP 155
Query: 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAG 692
+D + I+T+ G P+ A++ +L+ L DV LP++H G
Sbjct: 156 EFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG 215
Query: 693 -GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYS 751
GL+ T+ G + I KF + RD +K M +L S
Sbjct: 216 LGLMLTLQQ--AGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLAS 273
Query: 752 HQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIP----- 806
+ V + + ++RF + AT G + T G P
Sbjct: 274 LRAVTGLDT-------PETIERFEATCPNATFWATFGQS------ETSGLSTFAPYRDRP 320
Query: 807 --TLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
P F VA++ E++P+ PG +GEI P+ F GY
Sbjct: 321 KSAGRPLFWRTVAVVD---AEDRPL--------------PPGE-VGEIVLRGPTV-FKGY 361
Query: 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDT--YRWKGENVSTMEV 922
+ + + N + +GDM D GYL++ R + + GENV EV
Sbjct: 362 WNNAAATQHAFRN------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEV 415
Query: 923 EATISKYLPYTEFTVYGV 940
E + ++ + V GV
Sbjct: 416 EGALKQHPAIADAVVIGV 433
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Malonyl-Coa
And Amp Bound
Length = 505
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 94/387 (24%), Positives = 143/387 (36%), Gaps = 40/387 (10%)
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYH 689
P + D L +YTSGTTG PK A++P + DV+ LP++H
Sbjct: 148 PEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFH 207
Query: 690 SAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEAD 749
G ++G + L G S+ +FS R+ A + G Y ++ AD
Sbjct: 208 VHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL---NDGATMLFGVPTMYHRIAETLPAD 264
Query: 750 YSHQVVKMIGVGMRGDIWAKFVKRFH---------VQTIIEFYGATEGNANLVNMDNTEG 800
++ K + G R + H + +IE YG TE N + E
Sbjct: 265 --PELAKAL-AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGEP 321
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
G + LP ++ LVE G I G +GEI+ P+
Sbjct: 322 RAGTVGVPLPG-------VELRLVEED-------GTPIAALD---GESVGEIQVRGPNL- 363
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG-DTYRWKGENVST 919
F Y ++ ++ D +F +GDM V D GY+ R D + G +
Sbjct: 364 FTEYLNRPDATAAAFTE-----DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGA 418
Query: 920 MEVEATISKYLPYTEFTVYGVKVGDLDGR-AGMIAIVDTSNQVDLKLLVQGLDANLPAYA 978
E+E + ++ E V G DL R I D + L L + A L +
Sbjct: 419 GEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAARLAPHK 478
Query: 979 RPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
RP VR + A+ KI K L +
Sbjct: 479 RPRVVRYLDAVPRNDMGKIMKRALNRD 505
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 97/458 (21%), Positives = 191/458 (41%), Gaps = 43/458 (9%)
Query: 497 NDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556
+D +TT LE E + + A L+ G + + L+ + +LGA GV+
Sbjct: 44 DDTGSTTYGELE----ERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVV 99
Query: 557 SALINTNLKKQPLVHSISTVKSKAIIVS-ALYYPEIEAIRESIPDVKLFLLDETKPDLPN 615
+ NT L V+ ++ ++A+I S AL +A+ + D ++ + + P
Sbjct: 100 PVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPR 159
Query: 616 LSDLMKTTPASEVKPSEPLQTS--DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHL 672
L+ L + + ++ T D ++Y+SG+TG PK + + + ++ K +
Sbjct: 160 LAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPI 219
Query: 673 LSLGSGDVIYNCLPMYHSAG---GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA 729
L + DV+++ ++ + G GL T P + ++I + + +A F +++
Sbjct: 220 LGIAENDVVFSAAKLFFAYGLGNGL--TFPLSVGATAILMAERPTADAIFARLVEHRPTV 277
Query: 730 GIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787
+ + +L S + AD + ++ G + +I +F F + I++ G+TE
Sbjct: 278 FYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGCE-ILDGIGSTE 336
Query: 788 GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
+ + N GAV T PV + +L RD + P
Sbjct: 337 --MLHIFLSNRAGAVE-----YGTTGRPVPGYEIEL------RD-------EAGHAVPDG 376
Query: 848 IIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
+G++ PS + ++++S+ L + GDKY + G + R+
Sbjct: 377 EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPN-------GCYVYAGRSD 429
Query: 908 DTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945
D + G+ VS +EVE + ++ E V GV G L
Sbjct: 430 DMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGL 467
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 102/480 (21%), Positives = 177/480 (36%), Gaps = 41/480 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + ++A +L G + GD +A E E + ++L + G + +NT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + I+ + ++ P +I ++ PD L +
Sbjct: 92 LDYFITDAEPXIVVCD----PSXRDGIAAIAAXVGATVETLGPD--GRGSLTDAAAGASE 145
Query: 629 KPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPM 687
+ + +D L I YTSGTTG A++ + + DV+ + LP+
Sbjct: 146 AFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPI 205
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
YH+ G + + L S+ F A+ G+ R L + + +
Sbjct: 206 YHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPT-FYTRLLQSPRLTX 264
Query: 748 ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT---IIEFYGATEGNANLVNMDNTEGAVGI 804
H + + G + A + + T ++E YG TE N N N + + G
Sbjct: 265 ETTGHMRLFISG---SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGA 321
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+ LP + + DP+TG + P IG I+ P+ F GY
Sbjct: 322 VGPALPGV-------------SARVTDPETGXEL------PRGDIGMIEVXGPNV-FXGY 361
Query: 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
E + D +F++GD+ +DE GY++ R D G NV E+E+
Sbjct: 362 WRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIES 416
Query: 925 TISKYLPYTEFTVYGVKVGDL-DGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFV 983
I E V GV D +G + + + ++L GLD L + P V
Sbjct: 417 EIDAMPGVVESAVIGVPHADFGEGVTAFVVLXREFAPSEAQVL-HGLDGQLAXFXMPXXV 475
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 93/449 (20%), Positives = 181/449 (40%), Gaps = 48/449 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + + ++ L+ G GD +A + N ++ + +G + N L +
Sbjct: 51 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE 110
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFL-LDETKPDLPNLSDLMKTTPASE 627
+ + ++ + K ++ P +EAIR + V+ F+ +DE P+ + A
Sbjct: 111 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP 170
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL--LSLGSGDVIYNCL 685
V+ E + YT+GTTGLPK + + ++L + +L DV+ +
Sbjct: 171 VRVPERAACGMA----YTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVV 226
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFR--DCAKYKCNAGIYIGEMCRYLLAS 743
PM+H + L+ + + ++ D AG+ LA
Sbjct: 227 PMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV---PTVWLALAD 283
Query: 744 KESEADYSHQVVKMIGVGMRG---DIWAKFVKRFHVQTIIEFYGATEGN---------AN 791
+ + ++ + VG + A+F +R V+ + + YG TE + ++
Sbjct: 284 YLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGVE-VRQGYGLTETSPVVVQNFVKSH 341
Query: 792 LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
L ++ E T LP P+ ++ E +P+ PK G +GE
Sbjct: 342 LESLSEEEKLTLKAKTGLPI---PLVRLRVADEEGRPV--PKDGKA-----------LGE 385
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
++ P GY +E+ + L D +F +GD+ V DE GY+ KDR D +
Sbjct: 386 VQLKGPWITG-GYYGNEEATRSALTP-----DGFFRTGDIAVWDEEGYVEIKDRLKDLIK 439
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGV 940
GE +S++++E + + E V +
Sbjct: 440 SGGEWISSVDLENALMGHPKVKEAAVVAI 468
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 88/438 (20%), Positives = 176/438 (40%), Gaps = 54/438 (12%)
Query: 513 EYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHS 572
E + ++A ++ G +A+ EN ++ GA +GV A N ++ L +S
Sbjct: 92 EMACRLAETMKRYGLGLQHHIAVCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNS 151
Query: 573 ISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN----LSDLMKTTPAS-- 626
+S + + S +I +++ +P ++ ++ +++ D S + PA
Sbjct: 152 LSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFN 211
Query: 627 --EVKPSEPLQTSDSLLYIYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGSG 678
+ P + + + L + +SG+TGLPK I F G ++
Sbjct: 212 EYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIP---D 268
Query: 679 DVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCR 738
I +P +H G + T+ L G I + +F + R YK + + + +
Sbjct: 269 TAILTVIPFHHGFG-MFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFS 327
Query: 739 YLLASKESEA-DYS--HQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV-- 793
+ S + D S H++ G + ++ KRF + I + YG TE + ++
Sbjct: 328 FFAKSTLVDKYDLSNLHEIASG-GAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIIT 386
Query: 794 --NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGE 851
D+ GA G ++P F I+ D + + + + LC++ G +I
Sbjct: 387 PRGRDDKPGACG---KVVPFF--SAKIVDLDTGKTLGV-NQRGELCVK------GPMI-- 432
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
GY + E+ +++ D + SGD+ D+ GY + DR +
Sbjct: 433 ---------MKGYVNNPEATSALIDK-----DGWLHSGDIAYYDKDGYFFIVDRLKSLIK 478
Query: 912 WKGENVSTMEVEATISKY 929
+KG V E+E+ + ++
Sbjct: 479 YKGYQVPPAELESILLQH 496
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 162/441 (36%), Gaps = 39/441 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + ++A +L G + GD +A E E + ++L + G + +NT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTAYTLHE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + I+ + ++ P +I ++ PD L +
Sbjct: 92 LDYFITDAEPXIVVCD----PSXRDGIAAIAAXVGATVETLGPD--GRGSLTDAAAGASE 145
Query: 629 KPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPM 687
+ + +D L I YTSGTTG A++ + + DV+ + LP+
Sbjct: 146 AFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPI 205
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
YH+ G + + L S+ F A+ G+ R L + + +
Sbjct: 206 YHTHGLFVASNVTLFARGSMIFLPXFDPDXILDLMARATVLMGVPT-FYTRLLQSPRLTX 264
Query: 748 ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT---IIEFYGATEGNANLVNMDNTEGAVGI 804
H + + G + A + + T ++E YG TE N N N + + G
Sbjct: 265 ETTGHMRLFISG---SAPLLADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGA 321
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+ LP + + DP+TG + P IG I+ P+ F GY
Sbjct: 322 VGPALPGV-------------SARVTDPETGXEL------PRGDIGMIEVXGPNV-FXGY 361
Query: 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
E + D +F++GD+ +DE GY++ R D G NV E+E+
Sbjct: 362 WRMPEXTXSEFRD-----DGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIES 416
Query: 925 TISKYLPYTEFTVYGVKVGDL 945
I E V GV D
Sbjct: 417 EIDAMPGVVESAVIGVPHADF 437
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 97/440 (22%), Positives = 174/440 (39%), Gaps = 43/440 (9%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E S + A +L G ++GD +A++ PE+ V LG + G+I +K
Sbjct: 78 ELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD 137
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDETKPDLPNLSDLMKTTPAS 626
+++ + K+KAI+ E++ + P +KL + +++ N L+ AS
Sbjct: 138 ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE--AS 195
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
+ ++ +TSGT+GLPK A + L ++ L + D+++
Sbjct: 196 TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT--- 252
Query: 687 MYHSAGGLIGTIPALI----LGSS--IAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL 740
G ++ + +L+ LG+ + + KF + + Y + + + R L
Sbjct: 253 -ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML 311
Query: 741 LASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT---IIEFYGATEGNANLVNMDN 797
L S + H + + VG + + ++ + QT I E YG TE +
Sbjct: 312 LQQDLSSYKFPH-LQNCVTVGE--SLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKT 368
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
+ G + T + V II + + P T G I +K P
Sbjct: 369 MKIKPGYMGTAASCY--DVQIID----DKGNVLPPGT----------EGDIGIRVKPIRP 412
Query: 858 SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
F GY D + K N+ GD ++L GD + DE GY F R D G +
Sbjct: 413 IGIFSGYVDNPD---KTAANIR--GD-FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 918 STMEVEATISKYLPYTEFTV 937
EVE + ++ E V
Sbjct: 467 GPSEVENALMEHPAVVETAV 486
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 128 SEFKKSVKRRPNAPCYYFQDE----TWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCE 182
++ +K+ KR P+ ++ + W +++ E S + A +L G ++GD +A++
Sbjct: 48 ADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107
Query: 183 NRPEYVGVWLGAAKLGVI 200
PE+ V LG + G+I
Sbjct: 108 RVPEWWLVILGCIRAGLI 125
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 97/440 (22%), Positives = 174/440 (39%), Gaps = 43/440 (9%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E S + A +L G ++GD +A++ PE+ V LG + G+I +K
Sbjct: 78 ELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTD 137
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDETKPDLPNLSDLMKTTPAS 626
+++ + K+KAI+ E++ + P +KL + +++ N L+ AS
Sbjct: 138 ILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE--AS 195
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
+ ++ +TSGT+GLPK A + L ++ L + D+++
Sbjct: 196 TTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWT--- 252
Query: 687 MYHSAGGLIGTIPALI----LGSS--IAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL 740
G ++ + +L+ LG+ + + KF + + Y + + + R L
Sbjct: 253 -ISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRML 311
Query: 741 LASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT---IIEFYGATEGNANLVNMDN 797
L S + H + + VG + + ++ + QT I E YG TE +
Sbjct: 312 LQQDLSSYKFPH-LQNCVTVGE--SLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKT 368
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
+ G + T + V II + + P T G I +K P
Sbjct: 369 MKIKPGYMGTAASCY--DVQIID----DKGNVLPPGT----------EGDIGIRVKPIRP 412
Query: 858 SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
F GY D + K N+ GD ++L GD + DE GY F R D G +
Sbjct: 413 IGIFSGYVDNPD---KTAANIR--GD-FWLLGDRGIKDEDGYFQFMGRADDIINSSGYRI 466
Query: 918 STMEVEATISKYLPYTEFTV 937
EVE + ++ E V
Sbjct: 467 GPSEVENALMEHPAVVETAV 486
Score = 36.2 bits (82), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 128 SEFKKSVKRRPNAPCYYFQDE----TWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCE 182
++ +K+ KR P+ ++ + W +++ E S + A +L G ++GD +A++
Sbjct: 48 ADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107
Query: 183 NRPEYVGVWLGAAKLGVI 200
PE+ V LG + G+I
Sbjct: 108 RVPEWWLVILGCIRAGLI 125
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ +G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ +G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ +G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGASIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ +G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ +G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 164/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ +G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 107/533 (20%), Positives = 195/533 (36%), Gaps = 61/533 (11%)
Query: 492 NARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
A D A T N ++D ++++A Q G ++ D + + N E+ V
Sbjct: 34 RAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE 608
+LG + + + + + ++ A I+ Y S D + L +
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAY---------SGFDYRS-LARQ 143
Query: 609 TKPDLPNLSDLMKTTPASEVKPSEPLQT----------SDSLLYIYTSGTTGLPKAAIMP 658
+ LP L +++ A E P E L T SD + G+TGL K
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRT 203
Query: 659 NFKVLLGGQVGKHLLSLGSGDVIYNCLPMYH----SAGGLIGTIPALILGSSIAIRTKFS 714
+ + + + L V LPM H S+ G++G + A G + + S
Sbjct: 204 HDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYA---GGRVVLSPSPS 260
Query: 715 ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEAD--YSHQVVKMIGVGMRGDIWAKFVK 772
+ F + K + + + + S D S QV+++ G + A+ VK
Sbjct: 261 PDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEA-ARRVK 319
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP 832
T+ + +G EG N +D+ E ++ T P++ V + RD
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPE------EIIVNTQGKPMSPYDESRVWDDHDRDV 373
Query: 833 KTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMM 892
K G P I G Y ++ + E D ++ +GD++
Sbjct: 374 KPGETGHLLTRGPYTIRGY------------YKAEEHNAASFTE------DGFYRTGDIV 415
Query: 893 VMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI 952
+ GY+ + R D GE V+ EVE + + + + + L R+ +
Sbjct: 416 RLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVF 475
Query: 953 AIV--DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
I + +LK ++ + L AY P V +++ TG K+ K L+
Sbjct: 476 IIPRDEAPKAAELKAFLR--ERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 104/512 (20%), Positives = 193/512 (37%), Gaps = 52/512 (10%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++D S +A L + G KGD + N E+ V+ K GV+ + ++ L
Sbjct: 60 ELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYEL 119
Query: 570 VHSISTVKSKAIIVSALY--YPEIEAIRESIPDVKL-----FLLDETKPDLPNLSDLMKT 622
I ++ K +I S + + + I +S+ DV L +L+ D L D ++
Sbjct: 120 NAFIKQIQPKLLIGSRQHEVFSNNQFI-DSLHDVNLSPEIILMLNHQATDF-GLLDWIE- 176
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
TPA + + + G+TG PK + + + L S +
Sbjct: 177 TPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLL 236
Query: 683 NCLPMYH----SAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCR 738
LP H S+ G +G + A G + + N F +++ N +
Sbjct: 237 CALPAPHNFMLSSPGALGVLHA---GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI 293
Query: 739 YLLASKESEADYSHQV--VKMIGVGMRG--DIWAKFVKRFHVQTIIEFYGATEGNANLVN 794
L E A Y Q+ +K++ VG + A+ V + + +G EG N
Sbjct: 294 MWL---EKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTR 350
Query: 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQ-PGMIIGEIK 853
+D+++ Q + +PI + +Y + P IG +
Sbjct: 351 LDDSDE-------------------QIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLA 391
Query: 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
P F GY E ++ + D Y+ SGD++ G L R D
Sbjct: 392 TRGPYT-FCGYYQSPEHNSQVFDE-----DNYYYSGDLVQRTPDGNLRVVGRIKDQINRG 445
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGL-DA 972
GE +++ E+E I + P V + G IV + ++ +L + L +
Sbjct: 446 GEKIASEEIEKLILLH-PEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMEL 504
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
+ Y P +++++++ +T K+ K QL++
Sbjct: 505 GIAQYKLPDQIKLIESLPLTAVGKVDKKQLRS 536
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 90/464 (19%), Positives = 163/464 (35%), Gaps = 72/464 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A L D G KKGDV+A+ PE L A++G + ++I + + I
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDS 178
Query: 577 KSKAIIVS------------------ALYYPEIEAIRESIPDVKLFLLDETKPDLP---- 614
S+ +I + AL P + ++ I +L T D+
Sbjct: 179 SSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI------VLKRTGSDIDWQEG 232
Query: 615 ---NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGK 670
DL++ AS E + D L +YTSG+TG PK + L+ K
Sbjct: 233 RDLWWRDLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 290
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI----AIRTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 291 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 350
Query: 727 CNAGIYIGEMCRYLLASK----ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT--II 780
N R L+A E S +++ G + + W + K+ + ++
Sbjct: 351 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVV 410
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+ + TE ++ G I + P +Q LV+N+
Sbjct: 411 DTWWQTETGGFMITP-----LPGAIELKAGSATRPFFGVQPALVDNE------------- 452
Query: 841 KYNQPGMIIGEIKQSDP----SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE 896
+ Q G G + +D +R +G ++ + F + SGD DE
Sbjct: 453 GHPQEGATEGNLVITDSWPGQARTLFG------DHERFEQTYFSTFKNMYFSGDGARRDE 506
Query: 897 LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GY + R D G + T E+E+ + + E V G+
Sbjct: 507 DGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGI 550
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 161 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
+ A L D G KKGDV+A+ PE L A++G + +
Sbjct: 119 RFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV 161
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 113/532 (21%), Positives = 209/532 (39%), Gaps = 55/532 (10%)
Query: 480 DVTYSRFKQEASNARSTNDAAATTVKNLE-AQIDEYSNKIARILQDDGFKKGDVLALMCE 538
D T + +E + R N A + L +++ +N++ARI + G K ++ +M E
Sbjct: 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 97
Query: 539 NRPE-YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRES 597
+ ++G+ L K G I+ K+ + + + +++ ++ I I+ +
Sbjct: 98 KSIDLFIGI-LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN 156
Query: 598 IPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM 657
V++F D +K + + P +++D IYTSGTTG PK ++
Sbjct: 157 -GQVEIFE-----------EDTIKIREGTNLHV--PSKSTDLAYVIYTSGTTGNPKGTML 202
Query: 658 -----PNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK 712
N KV ++ L++ D I + A + AL+ G+S+ I K
Sbjct: 203 EHKGISNLKVFF-----ENSLNVTEKDRIGQFASISFDAS-VWEMFMALLTGASLYIILK 256
Query: 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK 772
N F +Y I + + + + E S Q + G + K+ +
Sbjct: 257 -DTINDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKWKE 315
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNTEGAVG-IIPTLLPTFLHPVAIIQFDLVENQPIRD 831
+ T I YG TE T+ +G +P P ++N I
Sbjct: 316 KV---TYINAYGPTETTICATTWVATKETIGHSVPIGAP-------------IQNTQIYI 359
Query: 832 PKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE-SQKKILENVFKPGDKYFLSGD 890
L ++ + IG +R GY + E + +K ++N F PG+K + +GD
Sbjct: 360 VDENLQLKSVGEAGELCIG---GEGLAR---GYWKRPELTSQKFVDNPFVPGEKLYKTGD 413
Query: 891 MMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG 950
G + + R + + +G V EVE+ + K++ +E V K D +
Sbjct: 414 QARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK--DHQEQPY 471
Query: 951 MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ A + + L+ L Q LP Y P + + + +T KI + QL
Sbjct: 472 LCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 523
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 112 AILGTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGF 171
A+ TK + T+ F++ V +RPN ++E T +++ +N++ARI + G
Sbjct: 27 AVNNTKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGI 86
Query: 172 KKGDVLALMCENRPE-YVGVWLGAAKLG 198
K ++ +M E + ++G+ L K G
Sbjct: 87 GKDTLVGIMMEKSIDLFIGI-LAVLKAG 113
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 101/512 (19%), Positives = 184/512 (35%), Gaps = 58/512 (11%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++D ++++A Q G ++ D + + N E+ V +LG + + + +
Sbjct: 55 ELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEI 114
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
+ ++ A I+ Y S D + L + + LP L +++ A E
Sbjct: 115 TYFCEFAEAAAYIIPDAY---------SGFDYRS-LARQVQSKLPTLKNIIVAGEAEEFL 164
Query: 630 PSEPLQT----------SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD 679
P E L T SD + G+TGL K + + + + L
Sbjct: 165 PLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHST 224
Query: 680 VIYNCLPMYH----SAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGE 735
V LP H S+ G++G L G + + S + F + K +
Sbjct: 225 VYLAALPXAHNYPLSSPGVLGV---LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPP 281
Query: 736 MCRYLLASKESEAD--YSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793
+ + S D S QV+++ G + A+ VK T+ + +G EG N
Sbjct: 282 LAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEA-ARRVKAVFGCTLQQVFGXAEGLVNYT 340
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
+D+ E ++ T P + V + RD K G P I G
Sbjct: 341 RLDDPE------EIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGY-- 392
Query: 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
Y ++ + E D ++ +GD++ + GY+ + R D
Sbjct: 393 ----------YKAEEHNAASFTE------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRG 436
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV--DTSNQVDLKLLVQGLD 971
GE V+ EVE + + + L R+ + I + +LK ++ +
Sbjct: 437 GEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLGERSCVFIIPRDEAPKAAELKAFLR--E 494
Query: 972 ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
L AY P V +++ TG K+ K L+
Sbjct: 495 RGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
Q+D+++ IA LQ +G K GD + L+ + +LG G I+ I +++ L
Sbjct: 45 QLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLL 104
Query: 570 VHSISTV-KSKAIIVSALYYPEIEAIRESIPDVKLFLLDE--TKP---DLPNLS-DLMKT 622
+ V SK +IV + +K F DE T P +P ++ + ++
Sbjct: 105 DKAQRIVTNSKPVIVLXI-----------ADHIKKFTADELNTNPKFLKIPAIALESIEL 153
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD--V 680
+S +P+ ++++D YTSG+T PK + + +L + K S D +
Sbjct: 154 NRSSSWQPTS-IKSNDIAFLQYTSGSTXHPKGVXVSHHNLL--DNLNKIFTSFHXNDETI 210
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAI 709
I++ LP +H GLIG I I G AI
Sbjct: 211 IFSWLPPHHDX-GLIGCILTPIYGGIQAI 238
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
+ET T +Q+D+++ IA LQ +G K GD + L+ + +LG G I+
Sbjct: 38 EETXTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIA 92
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From
Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From
Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From
Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 90/413 (21%), Positives = 160/413 (38%), Gaps = 58/413 (14%)
Query: 605 LLDET---KPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK 661
LLD T + D N + + K +P++ + S L S+++ TSGTTG P+ A+ F+
Sbjct: 130 LLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMF--TSGTTG-PQKAVPQTFR 186
Query: 662 VLLGGQVG-KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFR 720
+G K L + LP+YH +G L + A+I G ++ I KF+A
Sbjct: 187 NHYASAIGCKESLGFDRDTNWLSVLPIYHISG-LSVLLRAVIEGFTVRIVDKFNAEQILT 245
Query: 721 DCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780
+ + + +L+ E Y+ Q + + G + + ++ + I
Sbjct: 246 MIKNERITHISLVPQTLNWLMQQGLHEP-YNLQKILLGGAKLSATMIETALQ--YNLPIY 302
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRC 840
+G TE + + T P LH R G+
Sbjct: 303 NSFGMTETCSQFL-------------TATPEMLHA--------------RPDTVGM---- 331
Query: 841 KYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGD-------KYFLSGDMMV 893
P + ++K +P++ G+ + ++ P D YF +GD+
Sbjct: 332 ----PSANV-DVKIKNPNKE--GHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAE 384
Query: 894 MDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA 953
+D GY+ DR D GEN+ ++E T++K P V D G+ +
Sbjct: 385 IDHEGYVMIYDRRKDLIISGGENIYPYQIE-TVAKQFPGISDAVCVGHPDDTWGQVPKLY 443
Query: 954 IVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006
V S+ + L+ L +L Y P + + T T K+++ +L EG
Sbjct: 444 FVSESD-ISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREG 495
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 100/444 (22%), Positives = 176/444 (39%), Gaps = 84/444 (18%)
Query: 527 FKKGDVLALMCENRPEYVGVWLGAAKLGVISALI----------NTNLKKQPLVHSISTV 576
KKGD +AL+ E E+V + G+++ + + + K Q L +++
Sbjct: 70 LKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPXGVGQRDSWSAKLQGL---LASC 126
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQT 636
+ AII + P + A P+ L +L K P ++V P+
Sbjct: 127 QPAAIITGDEWLPLVNAATHDNPE--LHVLSHA---------WFKALPEADVALQRPVPN 175
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH-LLSLGSGDVIYNCLPMYHSAGGLI 695
+ L YTSG+T P+ I+ + +V + H + L GD + LP YH GL+
Sbjct: 176 DIAYLQ-YTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHDX-GLV 233
Query: 696 GTI--PALILGSSIAIRTKFSAS---NYFRDCAKYKCNAGI---YIGEMCRYLLASKE-S 746
G + P S +RT+ A + + +K + + + E+C+ + K+ +
Sbjct: 234 GFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLA 293
Query: 747 EADYSHQVVKMIGV-GMRGDIWAKFVK-----RFHVQTIIEFYGATEGNANLVNMDNTEG 800
E D S V IG + + +F + F +T YG E N + + ++
Sbjct: 294 ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLAE---NALAVSFSDE 350
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQ-----PIRD--------------PKTGLCIRCK 841
A G++ V + D++E Q P + P+ G+ IR +
Sbjct: 351 ASGVV----------VNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNE 400
Query: 842 YNQP--GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
P ++G I S PS GY + SQ +I + +GD+ + + GY
Sbjct: 401 AGXPVAERVVGHICISGPSLX-SGYFGDQVSQDEIAAT------GWLDTGDLGYLLD-GY 452
Query: 900 LYFKDRTGDTYRWKGENVSTMEVE 923
LY R D +G N+ ++E
Sbjct: 453 LYVTGRIKDLIIIRGRNIWPQDIE 476
>pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In
Complex With Mili Peptide Containing Dimethylarginine
45.
pdb|4B9W|B Chain B, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In
Complex With Mili Peptide Containing Dimethylarginine 45
Length = 201
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPF 315
G C A + R V + S + FVDY + +E+ + L I PQ + LPF
Sbjct: 69 GRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAI-LPQFLL-LPF 126
Query: 316 QAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGE--ETGGRRYAVELFDL 372
Q ++C+L ++P W++ A R A VV +KL E VEL DL
Sbjct: 127 QGMQCWLVDIQPPNKHWTKEAT------ARFQACVVGLKLQARVVEITANGVGVELTDL 179
>pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1
Length = 226
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 10/119 (8%)
Query: 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPF 315
G C A + R V + S + FVDY + +E+ + L I PQ + LPF
Sbjct: 69 GRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAI-LPQFLL-LPF 126
Query: 316 QAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGE--ETGGRRYAVELFDL 372
Q ++C+L ++P W++ A R A VV +KL E VEL DL
Sbjct: 127 QGMQCWLVDIQPPNKHWTKEAT------ARFQACVVGLKLQARVVEITANGVGVELTDL 179
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With D-Alanine
Adenylate
Length = 512
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 160/423 (37%), Gaps = 56/423 (13%)
Query: 609 TKPDLP-------NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK 661
T DLP NL D+ T + P ++ ++ IYTSG+TG PK +
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 662 VLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS--------IAIRTKF 713
++ + +L +G V N P ++ P+L+ G + IA
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFSFDL-SVMDIYPSLVTGGTLWAIDKDMIARPKDL 227
Query: 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVK 772
AS D + EMC L+ + SE+ + + G + ++ K ++
Sbjct: 228 FASLEQSDIQVWTSTPS--FAEMC--LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIE 283
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP 832
RF TI+ YG TE + + TE + +L PV + D
Sbjct: 284 RFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL------PVGYCKSD---------- 327
Query: 833 KTGLCIRCKYNQPGMII-----GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 887
C + G I GEI PS GY E +K + G++ +
Sbjct: 328 ----CRLLIMKEDGTIAPDGEKGEIVIVGPSVSV-GYLGSPELTEKAFTMI--DGERAYK 380
Query: 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV-YGVKVGD-L 945
+GD + E G L++ R + G + E+E + + Y E V +K G+
Sbjct: 381 TGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHL-RACSYVEGAVIVPIKKGEKY 438
Query: 946 DGRAGMIAIVDTSNQVDLKL---LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
D ++ + S + + KL + + L+ LP Y P +I MT K+ + +L
Sbjct: 439 DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
Query: 1003 QNE 1005
+E
Sbjct: 499 LSE 501
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications For
Adenylation Mechanism
Length = 512
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 95/423 (22%), Positives = 160/423 (37%), Gaps = 56/423 (13%)
Query: 609 TKPDLP-------NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFK 661
T DLP NL D+ T + P ++ ++ IYTSG+TG PK +
Sbjct: 109 TVTDLPVRIVSEDNLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNC 168
Query: 662 VLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS--------IAIRTKF 713
++ + +L +G V N P ++ P+L+ G + IA
Sbjct: 169 LVSFTKWAVEDFNLQTGQVFLNQAPFSFDL-SVMDIYPSLVTGGTLWAIDKDMIARPKDL 227
Query: 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVK 772
AS D + EMC L+ + SE+ + + G + ++ K ++
Sbjct: 228 FASLEQSDIQVWTSTPS--FAEMC--LMEASFSESMLPNMKTFLFCGEVLPNEVARKLIE 283
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP 832
RF TI+ YG TE + + TE + +L PV + D
Sbjct: 284 RFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSL------PVGYCKSD---------- 327
Query: 833 KTGLCIRCKYNQPGMII-----GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 887
C + G I GEI PS GY E +K + G++ +
Sbjct: 328 ----CRLLIMKEDGTIAPDGEKGEIVIVGPSVSV-GYLGSPELTEKAFTMI--DGERAYK 380
Query: 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV-YGVKVGD-L 945
+GD + E G L++ R + G + E+E + + Y E V +K G+
Sbjct: 381 TGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHL-RACSYVEGAVIVPIKKGEKY 438
Query: 946 DGRAGMIAIVDTSNQVDLKL---LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
D ++ + S + + KL + + L+ LP Y P +I MT K+ + +L
Sbjct: 439 DYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKL 498
Query: 1003 QNE 1005
+E
Sbjct: 499 LSE 501
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 82/203 (40%), Gaps = 24/203 (11%)
Query: 511 IDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLV 570
++E +N++A L G G ++ + E + V L K G +++ + L
Sbjct: 106 LNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVERLA 165
Query: 571 HSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP--NLSDLMKTTPASEV 628
S+ + ++ S + L++ DE D P NL A+ V
Sbjct: 166 LSLEDTGAPLLVTSRPLSGRLTGT------TTLYVEDEAASDAPAGNL--------ATGV 211
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
P D ++TSG+TG PK + P+ + L G +G+ G +V C P+
Sbjct: 212 GPE------DVACVMFTSGSTGRPKGVMSPH-RALTGTYLGQDYAGFGPDEVFLQCSPVS 264
Query: 689 HSAGGLIGTIPALILGSSIAIRT 711
A GL AL+ G+ +++
Sbjct: 265 WDAFGLE-LFGALLFGARCVLQS 286
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 82/205 (40%), Gaps = 24/205 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++E +N++A L G G ++ + E + V L K G +++ +
Sbjct: 104 GALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQFPVER 163
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP--NLSDLMKTTPAS 626
L S+ + ++ S + L++ DE D P NL A+
Sbjct: 164 LALSLEDTGAPLLVTSRPLSGRLTGT------TTLYVEDEAASDAPAGNL--------AT 209
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
V P D ++TSG+TG PK + P+ + L G +G+ G +V C P
Sbjct: 210 GVGPE------DVACVMFTSGSTGRPKGVMSPH-RALTGTYLGQDYAGFGPDEVFLQCSP 262
Query: 687 MYHSAGGLIGTIPALILGSSIAIRT 711
+ A GL AL+ G+ +++
Sbjct: 263 VSWDAFGLE-LFGALLFGARCVLQS 286
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
Domain Containing Protein
Length = 110
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 254 HPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNL 313
H G + A + R +V T ++ + FVD+ D + P +DL + R +S L
Sbjct: 34 HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL-RSDFLS-L 91
Query: 314 PFQAIECYLAGV 325
PFQAIEC LA +
Sbjct: 92 PFQAIECSLARI 103
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALM 180
A N+ LVS F++ P +D+ + ++D +S+ +AR L +G + GD +AL
Sbjct: 32 ARNSDLVSLFREVAATAPERTALSAEDDRISYGRLDAWSDAVARTLLAEGVRPGDRVALR 91
Query: 181 CENRPEYVGVWLGAAKLGV 199
E + L K G
Sbjct: 92 MSPGAEAIVAILAILKCGA 110
>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2
Length = 94
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 254 HPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNL 313
H G + A + R +V T ++ + FVD+ D + P +DL + R +S L
Sbjct: 29 HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL-RSDFLS-L 86
Query: 314 PFQAIEC 320
PFQAIEC
Sbjct: 87 PFQAIEC 93
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 86/435 (19%), Positives = 171/435 (39%), Gaps = 48/435 (11%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++++ ++ +A L+ G K G+ + N E + KLGV L + ++ L
Sbjct: 55 ELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSEL 114
Query: 570 VHSISTVKSKAIIV---SALYYPE--IEAIRESIPDVKLF-LLDETKPDLPNLSDLMKTT 623
S ++ +I AL+ + + +++ LL+++ NL D +
Sbjct: 115 NAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGEH--NLQDAI-NH 171
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-LSLGSGDVIY 682
PA + + P + + + GTTG PK ++P V + + + + Y
Sbjct: 172 PAEDFT-ATPSPADEVAYFQLSGGTTGTPK--LIPRTHNDYYYSVRRSVEICQFTQQTRY 228
Query: 683 NC-LPMYHS-AGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG-EMCRY 739
C +P H+ A G++ + G ++ + SA+ F K++ N + + +
Sbjct: 229 LCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW 288
Query: 740 LLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796
L A E E+ +K++ VG + + A+ Q + + +G EG N +D
Sbjct: 289 LQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGMAEGLVNYTRLD 347
Query: 797 NTEGAVGIIPTL-LPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQ 854
++ A II T P + P + E P+ + G L R Y
Sbjct: 348 DS--AEKIIHTQGYP--MCPDDEVWVADAEGNPLPQGEVGRLMTRGPYT----------- 392
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
F GY + + + ++ SGD++ +D GY+ + R D G
Sbjct: 393 ------FRGYYKSPQHNASAFD-----ANGFYCSGDLISIDPEGYITVQGREKDQINRGG 441
Query: 915 ENVSTMEVEATISKY 929
E ++ E+E + ++
Sbjct: 442 EKIAAEEIENLLLRH 456
>pdb|1L0D|A Chain A, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
pdb|1L0D|B Chain B, X-Ray Crystal Structure Of Ampc S64d Mutant Beta-Lactamase
Length = 358
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 845 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGD--KYF---LSGDMMVMDEL 897
PGM + I Q P +GYAD + Q + +F+ GD K F L GD + E+
Sbjct: 23 PGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGDVSKTFTGVLGGDAIARGEI 80
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 1040 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGD--KYFLSVI 1085
PGM + I Q P +GYAD + Q + +F+ GD K F V+
Sbjct: 23 PGMAVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGDVSKTFTGVL 70
>pdb|2L4H|A Chain A, The Solution Structure Of Calcium Bound Cib1
pdb|2L4I|A Chain A, The Solution Structure Of Magnesium Bound Cib1
pdb|2LM5|A Chain A, Solution Structure Of Ca2+-Cib1 In Complex With The
Cytoplasmic Domain Of The Integrin Aiib Subunit
Length = 214
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLF 347
V+ S + ++P+E ++ + P+L +N PF+ C + P + S + DFLD +F
Sbjct: 68 VESSLRAQVPFEQILSL--PELKAN-PFKERICRVFSTSPAKD--SLSFEDFLD-LLSVF 121
Query: 348 ARVVS--VKLHGEETGGRRYAVELFDLDEELNINKE 381
+ + +K H YA +FD D++ +N+E
Sbjct: 122 SDTATPDIKSH--------YAFRIFDFDDDGTLNRE 149
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 461 EEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIAR 520
++M E V++ + ++E++E ++ Y K+E+ AR + K + EY +K+ R
Sbjct: 166 QKMGEIVKEYEKRLERIEGELNY---KEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRR 222
Query: 521 ILQDDGFK 528
I +GF+
Sbjct: 223 IFGRNGFQ 230
>pdb|1DGU|A Chain A, Homology-Based Model Of Calcium-Saturated Cib (Calcium-And
Integrin-Binding Protein)
pdb|1DGV|A Chain A, Homology-Based Model Of Apo Cib (Calcium-And Integrin-
Binding Protein)
pdb|1XO5|A Chain A, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1XO5|B Chain B, Crystal Structure Of Cib1, An Ef-Hand, Integrin And
Kinase- Binding Protein
pdb|1Y1A|A Chain A, Crystal Structure Of Calcium And Integrin Binding Protein
pdb|1Y1A|B Chain B, Crystal Structure Of Calcium And Integrin Binding Protein
Length = 183
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 16/96 (16%)
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLF 347
V+ S + ++P+E ++ + P+L +N PF+ C + P + S + DFLD +F
Sbjct: 37 VESSLRAQVPFEQILSL--PELKAN-PFKERICRVFSTSPAKD--SLSFEDFLD-LLSVF 90
Query: 348 ARVVS--VKLHGEETGGRRYAVELFDLDEELNINKE 381
+ + +K H YA +FD D++ +N+E
Sbjct: 91 SDTATPDIKSH--------YAFRIFDFDDDGTLNRE 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,713,870
Number of Sequences: 62578
Number of extensions: 1405041
Number of successful extensions: 3806
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3601
Number of HSP's gapped (non-prelim): 171
length of query: 1102
length of database: 14,973,337
effective HSP length: 109
effective length of query: 993
effective length of database: 8,152,335
effective search space: 8095268655
effective search space used: 8095268655
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)