Query psy12852
Match_columns 1102
No_of_seqs 833 out of 5681
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:27:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 7.1E-92 2.4E-96 932.0 43.4 626 411-1096 401-1037(1304)
2 4dg8_A PA1221; ANL superfamily 100.0 2.3E-87 7.9E-92 820.2 39.8 569 466-1097 12-591 (620)
3 3rg2_A Enterobactin synthase c 100.0 1.5E-83 5E-88 790.7 38.6 572 479-1097 25-611 (617)
4 1amu_A GRSA, gramicidin synthe 100.0 8.4E-76 2.9E-80 712.4 44.2 547 446-1046 4-557 (563)
5 3ni2_A 4-coumarate:COA ligase; 100.0 7.8E-73 2.7E-77 684.3 47.6 497 475-1006 16-533 (536)
6 3g7s_A Long-chain-fatty-acid-- 100.0 2.3E-72 7.9E-77 682.3 38.8 497 477-1008 16-542 (549)
7 4fuq_A Malonyl COA synthetase; 100.0 5E-71 1.7E-75 662.6 46.2 479 492-1008 9-500 (503)
8 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.7E-71 1.3E-75 669.6 44.0 487 482-1006 26-529 (539)
9 3r44_A Fatty acyl COA syntheta 100.0 3.3E-71 1.1E-75 666.5 43.1 495 469-1007 4-512 (517)
10 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.9E-70 1.3E-74 655.9 46.5 472 492-1006 11-502 (504)
11 3etc_A AMP-binding protein; ad 100.0 3.4E-70 1.2E-74 665.0 45.9 495 482-1007 57-578 (580)
12 3o83_A Peptide arylation enzym 100.0 3.7E-71 1.3E-75 670.4 36.3 492 482-1008 31-540 (544)
13 4gr5_A Non-ribosomal peptide s 100.0 7.4E-71 2.5E-75 671.7 33.2 476 481-1005 75-568 (570)
14 2d1s_A Luciferase, luciferin 4 100.0 3E-69 1E-73 653.8 45.7 483 492-1007 35-542 (548)
15 1pg4_A Acetyl-COA synthetase; 100.0 1.3E-69 4.4E-74 669.3 43.2 540 430-1008 22-621 (652)
16 3ivr_A Putative long-chain-fat 100.0 2.7E-70 9.4E-75 658.5 35.0 485 483-1009 8-502 (509)
17 3rix_A Luciferase, luciferin 4 100.0 5.3E-70 1.8E-74 661.7 37.4 496 480-1008 20-541 (550)
18 1v25_A Long-chain-fatty-acid-C 100.0 9.9E-70 3.4E-74 657.4 38.7 485 483-1008 20-536 (541)
19 3tsy_A Fusion protein 4-coumar 100.0 3.5E-70 1.2E-74 707.1 35.3 548 411-1008 8-582 (979)
20 3fce_A D-alanine--poly(phospho 100.0 6.7E-69 2.3E-73 646.9 42.0 474 492-1010 10-506 (512)
21 3c5e_A Acyl-coenzyme A synthet 100.0 3.5E-68 1.2E-72 646.6 47.1 480 496-1008 56-562 (570)
22 2v7b_A Benzoate-coenzyme A lig 100.0 1.1E-67 3.8E-72 638.9 47.5 484 482-1004 25-528 (529)
23 1ry2_A Acetyl-coenzyme A synth 100.0 5.2E-68 1.8E-72 654.9 44.9 488 492-1008 91-637 (663)
24 3e7w_A D-alanine--poly(phospho 100.0 7.9E-68 2.7E-72 637.0 44.7 470 492-1008 10-503 (511)
25 3l8c_A D-alanine--poly(phospho 100.0 1.9E-68 6.7E-73 644.7 39.2 482 482-1010 6-514 (521)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.5E-68 8.6E-73 639.0 33.1 471 476-1004 18-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 3.6E-68 1.2E-72 639.1 31.9 471 492-1008 10-497 (501)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.5E-65 5E-70 630.0 32.0 490 482-1008 12-567 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 1.8E-64 6.3E-69 618.9 40.7 487 480-1007 20-562 (576)
30 3ite_A SIDN siderophore synthe 100.0 5.1E-66 1.7E-70 629.2 26.0 479 483-1008 23-543 (562)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.2E-52 7.5E-57 499.8 32.6 399 471-905 15-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.7E-51 9.3E-56 467.2 20.6 314 636-1008 36-354 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 1.3E-44 4.3E-49 426.1 22.7 328 633-1004 81-433 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.5E-44 5.2E-49 426.3 21.7 328 633-1004 88-440 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.7E-43 5.8E-48 416.6 22.1 326 633-1004 86-435 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 4.6E-27 1.6E-31 269.7 18.1 242 634-915 88-368 (369)
37 4b9w_A TDRD1, tudor domain-con 99.9 9.9E-26 3.4E-30 231.5 16.1 165 219-391 31-200 (201)
38 4b9x_A TDRD1, tudor domain-con 99.9 8.9E-26 3E-30 236.2 15.9 170 219-396 31-205 (226)
39 2wac_A CG7008-PA; unknown func 99.9 1.8E-21 6.3E-26 204.4 14.1 156 230-392 29-186 (218)
40 3ntk_A Maternal protein tudor; 99.8 9.8E-21 3.3E-25 187.9 10.9 142 228-383 26-167 (169)
41 3bdl_A Staphylococcal nuclease 99.8 2E-20 7E-25 223.4 15.8 163 229-398 388-553 (570)
42 2hqx_A P100 CO-activator tudor 99.8 8.2E-21 2.8E-25 202.6 5.4 135 251-392 64-201 (246)
43 2diq_A Tudor and KH domain-con 99.8 1E-19 3.4E-24 166.3 4.1 98 229-330 11-108 (110)
44 3fdr_A Tudor and KH domain-con 99.7 1.9E-18 6.5E-23 153.0 6.2 89 229-321 6-94 (94)
45 3ivr_A Putative long-chain-fat 99.6 1.6E-14 5.5E-19 172.9 16.9 105 121-225 3-107 (509)
46 4dg8_A PA1221; ANL superfamily 99.6 1.9E-14 6.6E-19 175.5 16.0 148 121-268 24-176 (620)
47 4gr5_A Non-ribosomal peptide s 99.5 6.1E-14 2.1E-18 170.1 17.1 147 122-268 73-226 (570)
48 1amu_A GRSA, gramicidin synthe 99.5 1.1E-13 3.7E-18 167.3 19.0 103 123-225 38-140 (563)
49 3etc_A AMP-binding protein; ad 99.5 9.7E-14 3.3E-18 168.3 16.3 108 118-225 49-162 (580)
50 3r44_A Fatty acyl COA syntheta 99.5 8.5E-14 2.9E-18 166.7 15.7 104 122-225 14-119 (517)
51 3g7s_A Long-chain-fatty-acid-- 99.5 7.6E-14 2.6E-18 168.5 14.3 105 121-225 16-128 (549)
52 2eqk_A Tudor domain-containing 99.5 2.1E-14 7.1E-19 117.7 5.8 67 250-318 19-85 (85)
53 3fce_A D-alanine--poly(phospho 99.5 1E-13 3.5E-18 166.0 14.6 102 124-225 1-102 (512)
54 1t5h_X 4-chlorobenzoyl COA lig 99.5 2.2E-13 7.5E-18 162.7 17.3 102 124-225 2-105 (504)
55 3ni2_A 4-coumarate:COA ligase; 99.5 1.2E-13 4E-18 166.4 14.2 103 123-225 21-125 (536)
56 1v25_A Long-chain-fatty-acid-C 99.5 2.3E-13 7.7E-18 164.0 16.6 107 119-225 13-123 (541)
57 3l8c_A D-alanine--poly(phospho 99.5 1.2E-13 4.2E-18 165.8 14.2 102 124-225 4-105 (521)
58 3o83_A Peptide arylation enzym 99.5 1.4E-13 4.8E-18 165.9 14.8 104 122-225 28-131 (544)
59 1ry2_A Acetyl-coenzyme A synth 99.5 2E-14 6.7E-19 177.0 6.7 158 68-225 15-190 (663)
60 1mdb_A 2,3-dihydroxybenzoate-A 99.5 2.9E-13 9.9E-18 162.9 15.4 104 122-225 23-126 (539)
61 3t5a_A Long-chain-fatty-acid-- 99.5 2E-13 6.7E-18 162.3 13.1 104 121-225 21-136 (480)
62 3ite_A SIDN siderophore synthe 99.4 4.1E-13 1.4E-17 162.7 13.9 104 121-225 17-130 (562)
63 3rix_A Luciferase, luciferin 4 99.4 2.6E-13 8.7E-18 164.0 11.7 105 121-225 17-126 (550)
64 4fuq_A Malonyl COA synthetase; 99.4 4.8E-13 1.6E-17 159.6 13.9 98 128-225 4-104 (503)
65 3s6w_A Tudor domain-containing 99.4 9.7E-14 3.3E-18 107.9 5.1 52 253-304 2-54 (54)
66 2v7b_A Benzoate-coenzyme A lig 99.4 6.3E-13 2.1E-17 159.8 14.7 100 125-225 25-124 (529)
67 3rg2_A Enterobactin synthase c 99.4 6.3E-13 2.1E-17 162.8 14.4 103 121-225 24-126 (617)
68 1mhn_A SurviVal motor neuron p 99.4 1.1E-13 3.8E-18 109.5 4.9 52 253-304 4-56 (59)
69 3e7w_A D-alanine--poly(phospho 99.4 5.1E-13 1.8E-17 159.8 13.0 102 124-225 1-103 (511)
70 3kxw_A Saframycin MX1 syntheta 99.4 1.6E-12 5.4E-17 158.8 16.8 105 121-225 8-119 (590)
71 3c5e_A Acyl-coenzyme A synthet 99.4 1.6E-12 5.6E-17 157.3 16.3 108 118-225 31-150 (570)
72 3tsy_A Fusion protein 4-coumar 99.4 8.6E-13 2.9E-17 170.5 14.5 103 123-225 60-164 (979)
73 2d9t_A Tudor domain-containing 99.4 2.4E-13 8.3E-18 113.9 5.4 58 252-311 9-67 (78)
74 2vsq_A Surfactin synthetase su 99.4 2.6E-12 8.9E-17 170.4 17.6 146 123-268 463-619 (1304)
75 4a4f_A SurviVal of motor neuro 99.4 3.1E-13 1E-17 108.7 5.2 54 251-304 7-61 (64)
76 3ipl_A 2-succinylbenzoate--COA 99.4 7.5E-13 2.6E-17 158.1 10.7 98 125-225 2-99 (501)
77 1pg4_A Acetyl-COA synthetase; 99.4 7E-13 2.4E-17 163.1 10.0 110 116-225 67-183 (652)
78 3lax_A Phenylacetate-coenzyme 99.4 5.6E-13 1.9E-17 122.4 6.2 95 904-1000 1-102 (109)
79 3pnw_C Tudor domain-containing 99.3 5.5E-13 1.9E-17 110.9 5.3 53 252-304 17-70 (77)
80 2d1s_A Luciferase, luciferin 4 99.3 2.1E-12 7.2E-17 155.7 12.2 101 124-225 25-128 (548)
81 1g5v_A SurviVal motor neuron p 99.3 6.8E-13 2.3E-17 112.5 5.5 58 252-311 10-68 (88)
82 3gqw_A Fatty acid AMP ligase; 99.3 4.2E-12 1.4E-16 154.6 14.1 104 122-225 19-132 (576)
83 3gxs_A Phenylacetate-coenzyme 99.3 1.4E-12 4.7E-17 119.5 6.9 94 904-1000 1-102 (109)
84 2cq8_A 10-formyltetrahydrofola 99.2 1.7E-13 5.8E-18 122.0 -4.1 66 1030-1096 24-92 (110)
85 3nyq_A Malonyl-COA ligase; A/B 99.2 8.3E-12 2.8E-16 148.8 5.0 140 124-268 22-167 (505)
86 4f6l_B AUSA reductase domain p 99.2 3.5E-12 1.2E-16 152.1 0.0 69 1028-1097 42-110 (508)
87 4i4d_A Peptide synthetase NRPS 99.1 1.7E-12 5.8E-17 114.9 -2.6 67 1029-1096 14-81 (93)
88 1dny_A Non-ribosomal peptide s 99.1 3E-12 1E-16 112.6 -3.2 66 1031-1097 14-80 (91)
89 2equ_A PHD finger protein 20-l 98.9 9.3E-10 3.2E-14 89.8 6.2 57 251-311 8-64 (74)
90 2ldm_A Uncharacterized protein 98.3 3.3E-10 1.1E-14 93.0 0.0 55 251-309 5-59 (81)
91 4eql_A 4-substituted benzoates 98.7 5.2E-08 1.8E-12 114.1 13.8 132 764-930 311-448 (581)
92 4b2g_A GH3-1 auxin conjugating 98.7 5.2E-07 1.8E-11 105.7 21.3 134 764-928 316-458 (609)
93 4epl_A Jasmonic acid-amido syn 98.6 1.4E-06 4.7E-11 101.8 20.2 130 766-928 318-453 (581)
94 2afd_A Protein ASL1650; twiste 98.6 4.6E-09 1.6E-13 92.0 -1.1 70 1027-1096 10-81 (88)
95 2ju1_A Erythronolide synthase; 98.5 4.4E-09 1.5E-13 93.6 -2.0 67 1030-1096 19-88 (95)
96 3tej_A Enterobactin synthase c 98.5 5.5E-09 1.9E-13 116.9 -3.4 64 1032-1096 12-76 (329)
97 2liu_A CURA; holo state, trans 98.5 5.4E-09 1.9E-13 93.9 -3.0 69 1028-1096 18-88 (99)
98 2jgp_A Tyrocidine synthetase 3 98.5 8.9E-09 3.1E-13 123.3 -3.3 65 1031-1096 10-75 (520)
99 2kr5_A PKS, aflatoxin biosynth 98.4 1.6E-08 5.6E-13 88.6 -1.8 67 1031-1097 11-81 (89)
100 3p8d_A Medulloblastoma antigen 98.2 1E-06 3.5E-11 69.5 5.1 55 251-309 5-59 (67)
101 3qii_A PHD finger protein 20; 98.2 1.9E-06 6.4E-11 70.9 5.0 55 251-309 20-74 (85)
102 2l22_A Mupirocin didomain acyl 98.1 1E-07 3.5E-12 98.7 -3.8 88 989-1096 4-93 (212)
103 1l0i_A Acyl carrier protein; a 98.0 2.8E-07 9.7E-12 78.3 -2.2 65 1033-1097 5-72 (78)
104 2cnr_A FAS, ACP, acyl carrier 98.0 5.1E-07 1.7E-11 77.6 -0.8 68 1029-1096 5-75 (82)
105 2lol_A ACP, acyl carrier prote 98.0 3.4E-07 1.2E-11 78.4 -2.3 67 1030-1096 5-74 (81)
106 2ehs_A ACP, acyl carrier prote 98.0 3.4E-07 1.2E-11 77.6 -2.4 63 1034-1096 4-69 (77)
107 2ava_A ACP I, acyl carrier pro 98.0 3.6E-07 1.2E-11 78.5 -2.4 65 1032-1096 5-72 (82)
108 1x3o_A Acyl carrier protein; s 98.0 5.2E-07 1.8E-11 77.1 -1.7 67 1030-1096 4-73 (80)
109 2l22_A Mupirocin didomain acyl 97.9 6.8E-07 2.3E-11 92.5 -1.7 69 1029-1097 128-198 (212)
110 2dnw_A Acyl carrier protein; A 97.8 1.5E-06 5.1E-11 77.4 -2.1 71 1026-1096 10-83 (99)
111 2kjs_A Putative acyl carrier p 97.8 1.3E-06 4.6E-11 75.0 -2.6 62 1035-1096 6-70 (87)
112 1f80_D Acyl carrier protein; t 97.7 1.1E-06 3.6E-11 75.3 -4.6 66 1032-1097 8-76 (81)
113 2l3v_A ACP, acyl carrier prote 97.7 4.7E-07 1.6E-11 77.2 -6.8 65 1032-1096 5-72 (79)
114 1or5_A Acyl carrier protein; A 97.6 2.4E-06 8.3E-11 73.4 -2.9 62 1036-1097 9-75 (83)
115 1klp_A ACP, ACPM, meromycolate 97.6 5.8E-06 2E-10 75.8 -1.7 68 1029-1096 5-75 (115)
116 3gzm_A Acyl carrier protein; h 97.5 5.8E-06 2E-10 70.6 -1.8 65 1032-1096 6-73 (81)
117 2fq1_A Isochorismatase; ENTB, 97.5 7.6E-06 2.6E-10 88.7 -1.7 49 1048-1096 232-280 (287)
118 2lte_A Specialized acyl carrie 96.7 1.4E-05 4.6E-10 71.3 0.0 67 1032-1098 27-95 (103)
119 1nq4_A Oxytetracycline polyket 97.5 4.1E-06 1.4E-10 73.8 -3.5 48 1049-1096 27-75 (95)
120 2qnw_A Acyl carrier protein; m 97.5 5.8E-06 2E-10 70.8 -2.8 65 1032-1096 8-75 (82)
121 2kwl_A ACP, acyl carrier prote 97.4 1.2E-05 4.1E-10 69.2 -2.0 69 1028-1096 6-77 (84)
122 1af8_A Actinorhodin polyketide 97.4 1.6E-05 5.4E-10 68.8 -1.6 48 1049-1096 28-76 (86)
123 2dig_A Lamin-B receptor; tudor 97.3 0.00042 1.4E-08 52.9 5.7 54 250-304 10-64 (68)
124 2jq4_A AGR_C_4658P, hypothetic 97.3 1.7E-05 6E-10 71.0 -2.4 64 1033-1096 24-93 (105)
125 2cg5_B Fatty acid synthase; tr 97.2 1.6E-05 5.5E-10 68.3 -2.8 57 1039-1096 14-73 (91)
126 3ejb_A Acyl carrier protein; p 97.2 1.5E-05 5.2E-10 70.3 -3.4 65 1032-1096 23-90 (97)
127 2l8d_A Lamin-B receptor; DNA b 97.2 0.00055 1.9E-08 52.1 5.3 53 251-304 8-61 (66)
128 2amw_A Hypothetical protein NE 96.7 0.00013 4.3E-09 62.5 -1.7 59 1038-1096 9-75 (83)
129 1vku_A Acyl carrier protein; T 96.7 0.00011 3.9E-09 64.8 -2.6 62 1035-1096 21-84 (100)
130 2l4b_A Acyl carrier protein; i 96.5 0.00021 7.1E-09 61.9 -2.2 65 1032-1096 9-79 (88)
131 1dv5_A APO-DCP, APO-D-alanyl c 96.4 0.00052 1.8E-08 58.0 -0.1 61 1036-1096 9-74 (80)
132 2kw2_A Specialized acyl carrie 96.4 0.00024 8.3E-09 63.1 -2.4 58 1039-1096 11-82 (101)
133 4dxe_H ACP, acyl carrier prote 96.3 0.00024 8.2E-09 62.9 -2.5 62 1036-1097 31-95 (101)
134 2vz8_A Fatty acid synthase; tr 96.0 0.0011 3.6E-08 92.1 0.0 64 1033-1097 2125-2191(2512)
135 1fh1_A NODF, nodulation protei 95.9 0.0011 3.8E-08 57.7 -0.3 49 1048-1096 30-82 (92)
136 3ce7_A Specific mitochodrial a 94.6 0.0035 1.2E-07 56.1 -1.5 68 1029-1096 17-91 (107)
137 2lki_A Putative uncharacterize 94.3 0.0049 1.7E-07 54.8 -1.4 49 1048-1096 44-97 (105)
138 2hfk_A Pikromycin, type I poly 93.7 0.0067 2.3E-07 66.8 -2.0 46 1032-1097 29-74 (319)
139 2cgq_A Acyl carrier protein AC 93.5 0.0074 2.5E-07 54.2 -1.7 47 1050-1096 45-93 (113)
140 2kci_A Putative acyl carrier p 92.4 0.0082 2.8E-07 51.2 -2.9 57 1040-1096 11-70 (87)
141 4eqp_A Thermonuclease; staphyl 91.9 1.3 4.3E-05 41.7 11.3 96 266-391 6-106 (143)
142 2l9f_A CALE8, meacp; transfera 88.3 0.043 1.5E-06 47.4 -2.0 64 1033-1096 16-83 (102)
143 3bdl_A Staphylococcal nuclease 87.4 3.1 0.0001 49.2 12.5 96 267-391 206-313 (570)
144 2eqj_A Metal-response element- 86.8 0.78 2.7E-05 35.6 4.4 50 252-303 13-63 (66)
145 3h8z_A FragIle X mental retard 84.4 1.1 3.8E-05 40.6 5.0 53 251-304 59-117 (128)
146 2g3r_A Tumor suppressor P53-bi 83.0 1.9 6.4E-05 37.8 5.5 61 254-323 6-69 (123)
147 1ssf_A Transformation related 81.1 1.4 4.9E-05 40.4 4.3 48 254-302 10-57 (156)
148 4hcz_A PHD finger protein 1; p 78.1 3.4 0.00011 31.1 4.7 50 253-304 4-54 (58)
149 4hvm_A Tlmii; PSI-biology, mid 76.1 0.7 2.4E-05 53.8 1.0 56 411-473 431-486 (493)
150 2bud_A Males-absent on the fir 73.1 4.8 0.00016 33.9 4.9 53 254-309 16-76 (92)
151 2e5q_A PHD finger protein 19; 70.5 9.9 0.00034 28.9 5.6 51 252-304 7-58 (63)
152 2eko_A Histone acetyltransfera 68.2 5 0.00017 33.6 4.1 54 251-304 8-69 (87)
153 1wgs_A MYST histone acetyltran 67.6 7.1 0.00024 35.8 5.4 53 251-304 11-70 (133)
154 2lcc_A AT-rich interactive dom 65.7 4.9 0.00017 32.8 3.5 53 252-304 5-64 (76)
155 2e5p_A Protein PHF1, PHD finge 65.7 7.6 0.00026 30.0 4.2 52 251-304 8-60 (68)
156 2y27_A Phenylacetate-coenzyme 61.7 22 0.00077 40.0 9.6 85 508-593 112-198 (437)
157 2ro0_A Histone acetyltransfera 60.5 9.4 0.00032 32.3 4.4 50 251-302 22-76 (92)
158 2y4o_A Phenylacetate-coenzyme 59.1 25 0.00086 39.7 9.5 84 508-592 114-199 (443)
159 3mea_A SAGA-associated factor 57.5 12 0.00039 36.1 5.0 41 251-291 115-157 (180)
160 3qov_A Phenylacetate-coenzyme 57.0 26 0.00089 39.5 9.1 85 508-593 108-194 (436)
161 2f5k_A MORF-related gene 15 is 52.1 17 0.00057 31.4 4.6 52 251-304 21-77 (102)
162 2lrq_A Protein MRG15, NUA4 com 54.0 3.7 0.00013 34.3 0.0 53 250-304 10-67 (85)
163 2jgp_A Tyrocidine synthetase 3 45.5 5.6 0.00019 46.4 0.9 42 411-458 479-520 (520)
164 2rnz_A Histone acetyltransfera 44.6 30 0.001 29.4 4.9 50 251-302 24-78 (94)
165 2qqr_A JMJC domain-containing 44.3 18 0.0006 32.2 3.6 52 252-304 5-56 (118)
166 2xk0_A Polycomb protein PCL; t 39.8 60 0.002 25.4 5.4 51 251-304 14-64 (69)
167 3h8z_A FragIle X mental retard 32.7 51 0.0017 29.8 4.8 40 264-304 12-52 (128)
168 3ask_A E3 ubiquitin-protein li 31.6 26 0.00088 35.1 3.0 73 254-328 4-92 (226)
169 3m9q_A Protein MALE-specific l 30.0 39 0.0013 29.0 3.4 54 251-304 18-84 (101)
170 2m0o_A PHD finger protein 1; t 29.7 1.2E+02 0.004 24.3 5.6 51 251-303 25-76 (79)
171 3dlm_A Histone-lysine N-methyl 29.5 63 0.0022 31.7 5.2 69 252-323 8-79 (213)
172 3db3_A E3 ubiquitin-protein li 28.9 40 0.0014 31.3 3.5 76 254-332 12-114 (161)
173 3mp6_A MBP, SGF29, maltose-bin 28.7 47 0.0016 38.5 5.2 41 250-290 455-495 (522)
174 1l5a_A Amide synthase, VIBH; n 26.9 6 0.00021 44.8 -3.0 39 411-455 377-418 (436)
175 1ri0_A Hepatoma-derived growth 26.7 84 0.0029 27.5 5.2 52 252-304 19-76 (110)
176 4f6l_B AUSA reductase domain p 26.3 14 0.00048 42.8 0.0 50 989-1038 4-60 (508)
177 3ezx_A MMCP 1, monomethylamine 26.1 1.8E+02 0.006 28.9 8.2 81 689-769 105-194 (215)
178 3hgu_A EHPF; phenazine, antibi 24.6 99 0.0034 33.6 6.7 80 508-589 113-217 (369)
179 2cvi_A 75AA long hypothetical 21.1 94 0.0032 25.3 4.2 48 919-976 15-62 (83)
180 2zbc_A 83AA long hypothetical 21.0 1.1E+02 0.0039 24.6 4.8 48 919-976 15-62 (83)
181 2daq_A WHSC1L1 protein, isofor 20.5 1.6E+02 0.0056 25.5 5.9 51 253-304 9-70 (110)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=7.1e-92 Score=932.01 Aligned_cols=626 Identities=17% Similarity=0.219 Sum_probs=528.7
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.+.|++++|+..+ ++++.++|.++|++++. +|+++++++++++++|+++++..||.+...++..+.++.|.+
T Consensus 401 ~~~y~~~lf~~~~-i~~l~~~~~~lL~~l~~-----~p~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~-- 472 (1304)
T 2vsq_A 401 KLAYNENVFDEAF-ILRLKSQLLTAIQQLIQ-----NPDQPVSTINLVDDREREFLLTGLNPPAQAHETKPLTYWFKE-- 472 (1304)
T ss_dssp EEEEETTTSCHHH-HHHHHHHHHHHHHHHHH-----STTSBGGGCCCCCHHHHHHHHTTTSCCCCCCCCCCHHHHHHH--
T ss_pred EEEECCccCCHHH-HHHHHHHHHHHHHHhcc-----CccccccccCCCCHHHHHHHHHhcCCCCCCCCCCCHHHHHHH--
Confidence 6789999999999 99999999999999999 999999999999999999999999998887776554554444
Q ss_pred hhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 491 SNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|++||||||.+|.+
T Consensus 473 -~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~ 551 (1304)
T 2vsq_A 473 -AVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPED 551 (1304)
T ss_dssp -HHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHH
T ss_pred -HHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHH
Confidence 5999999999998765 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCCC-ceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTS 646 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 646 (1102)
|+.+++++++++++|++......+.. ++. ...+.+++. ... .. . ...+.....++++|||+|||
T Consensus 552 rl~~il~~~~~~~vl~~~~~~~~~~~----~~~~~~~~~~~~~-------~~~-~~-~--~~~~~~~~~~~~~ayiiyTS 616 (1304)
T 2vsq_A 552 RISYMLADSAAACLLTHQEMKEQAAE----LPYTGTTLFIDDQ-------TRF-EE-Q--ASDPATAIDPNDPAYIMYTS 616 (1304)
T ss_dssp HHHHHHHHHTCCEEEECSTTCTTSTT----CCCCSEEEESSCG-------GGG-GS-C--SSCCCCCCCTTSEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEECcchhhhhhc----cCCCCcEEEeccc-------ccc-cc-c--cCCCCCCCCCCCeEEEEeCC
Confidence 99999999999999998865543221 221 223333321 011 11 1 11112356789999999999
Q ss_pred CCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHh
Q psy12852 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCA 723 (1102)
Q Consensus 647 GSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~ 723 (1102)
||||+||||+++|+++.+. .+....++++++|++++++|++|+.+ ++++|.+|+.|+++++.+. .++..+.+.|+
T Consensus 617 GSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~~-~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~ 694 (1304)
T 2vsq_A 617 GTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDAF-TFDFYASMLNAARLIIADEHTLLDTERLTDLIL 694 (1304)
T ss_dssp CSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTHH-HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHH
T ss_pred CCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHHH-HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHH
Confidence 9999999999999999986 55667889999999999999999987 8999999999999999875 78999999999
Q ss_pred hcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCC--Cc
Q psy12852 724 KYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE--GA 801 (1102)
Q Consensus 724 ~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~ 801 (1102)
++++|+++++|++++.|..... ....+++.+++|||+++++++++|.+.++..+++|.||+||++++++...... ..
T Consensus 695 ~~~vt~~~~~p~~~~~l~~~~~-~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 695 QENVNVMFATTALFNLLTDAGE-DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp HHTCCEEEEEHHHHHHHHHHCS-HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred HcCCcEEEccHHHHHHHHhhch-hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 9999999999999999976532 23457889999999999999999999998778999999999998877543221 11
Q ss_pred ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccC
Q psy12852 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFK 880 (1102)
Q Consensus 802 ~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~ 880 (1102)
.... +++.+. .+..++++|++ + +++|.|++||++ ++|+ .+++||+|+| +|+++|+.+||.
T Consensus 774 ~~~~-~iG~p~-~~~~~~i~d~~-~-----------~~~p~G~~GEl~----i~G~-~v~~GY~~~p~~T~~~f~~~p~~ 834 (1304)
T 2vsq_A 774 ISSL-PIGKPI-SNASVYILNEQ-S-----------QLQPFGAVGELC----ISGM-GVSKGYVNRADLTKEKFIENPFK 834 (1304)
T ss_dssp CSSC-CCBEEC-TTEEEEEECTT-S-----------CBCCTTCCEEEE----EEET-TCCCCBTTCHHHHHHHEEECTTS
T ss_pred CCCC-CCceee-CCCEEEEECCC-c-----------CCCCCCCceEEE----Eecc-ccCccccCCcccchhhhccCCCC
Confidence 1112 222222 45677777765 3 456899999876 4577 4889999997 899999999998
Q ss_pred CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCc
Q psy12852 881 PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQ 960 (1102)
Q Consensus 881 ~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~ 960 (1102)
+|++||||||+|++++||+|+|+||+|+|||+||+||+|+|||++|.++|+|++|+|++.+ +..+...+++|++....
T Consensus 835 ~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~--~~~~~~~l~a~vv~~~~ 912 (1304)
T 2vsq_A 835 PGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADR--HESGDASINAYLVNRTQ 912 (1304)
T ss_dssp TTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEEC--CSSSCCEEEEEEECSSS
T ss_pred CCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEe--cCCCCEEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999844 33456667777766667
Q ss_pred cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCC
Q psy12852 961 VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQP 1040 (1102)
Q Consensus 961 ~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 1040 (1102)
.+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++....... ..+ ....+..|+.+..+|
T Consensus 913 ~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~~~~~~---~~~--------~~p~~~~e~~l~~~~ 981 (1304)
T 2vsq_A 913 LSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLA---EEW--------IGPRNEMEETIAQIW 981 (1304)
T ss_dssp SCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCCGGGGC---CCC--------CCCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcchhhhc---ccc--------cCCCChHHHHHHHHH
Confidence 889999999999999999999999999999999999999999876432110 011 112234678888999
Q ss_pred cchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1041 GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1041 ~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+++||. +.|++++|||++|||||+|++|+++|++. |+.+++.+||++|||++||+
T Consensus 982 ~~vL~~-~~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~l~~~~~~~~~ti~~la~ 1037 (1304)
T 2vsq_A 982 SEVLGR-KQIGIHDDFFALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISA 1037 (1304)
T ss_dssp HHHHTC-SCCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHH
T ss_pred HHHcCC-CccCCCCCHHHhCCChHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHH
Confidence 999998 88999999999999999999999999987 99999999999999999985
No 2
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.3e-87 Score=820.17 Aligned_cols=569 Identities=14% Similarity=0.093 Sum_probs=387.8
Q ss_pred HHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchh
Q psy12852 466 FVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPE 542 (1102)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~ 542 (1102)
+....+....+.....+++.+++. +|+++|+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|+++
T Consensus 12 ~~~~~~~~~~~~~~~~tl~~~~~~--~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~ 89 (620)
T 4dg8_A 12 IVRMSQNSLLDLYAHPTVVARFSE--MAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRE 89 (620)
T ss_dssp -----CCSTTSGGGSCCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHH
T ss_pred HHHHhcCCcCCCCCCCCHHHHHHH--HHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH
Confidence 333333344444444445555554 6999999999998775 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhcc
Q psy12852 543 YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT 622 (1102)
Q Consensus 543 ~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (1102)
+++++|||+|+|++|||+||.+|.+++.+++++++++++|++....... .......+.. .
T Consensus 90 ~vva~lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~-------~~~~~~~~~~-------------~ 149 (620)
T 4dg8_A 90 SITCLLAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA-------NGLPCVPVRH-------------L 149 (620)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC-------TTSCEEEGGG-------------C
T ss_pred HHHHHHHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc-------cCCceeeecc-------------C
Confidence 9999999999999999999999999999999999999999765432211 1111111111 0
Q ss_pred CCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 623 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
.............++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++++|++|+.+ ++++|.+|+
T Consensus 150 ~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~ 227 (620)
T 4dg8_A 150 PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAA-TLEIWGALL 227 (620)
T ss_dssp CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHH-HHHHHHHHT
T ss_pred CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHH-HHHHHHHHh
Confidence 0111111123457899999999999999999999999999987766 56788999999999999999998 888999999
Q ss_pred cCceEEEeC--CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhh
Q psy12852 703 LGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780 (1102)
Q Consensus 703 ~G~~lv~~~--~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~ 780 (1102)
.|+++++.+ .+++..+.+.|+++++|+++++|++++.|+.... ....+++.+++|||++++++++++.+.+++++++
T Consensus 228 ~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 306 (620)
T 4dg8_A 228 NGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP-DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLV 306 (620)
T ss_dssp TTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG-GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEE
T ss_pred cCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh-hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEE
Confidence 999999975 4899999999999999999999999999876533 3456789999999999999999999988877999
Q ss_pred hccccccCCcccccCCCCCCc-ccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcc
Q psy12852 781 EFYGATEGNANLVNMDNTEGA-VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859 (1102)
Q Consensus 781 n~YG~TE~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~ 859 (1102)
|.||+||++++++........ .....+++.+. .+..+.++|++ +.+ .+|.|++||++ +.|+ .
T Consensus 307 n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~i~d~~-~~~----------~~~~g~~GEl~----i~G~-~ 369 (620)
T 4dg8_A 307 NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAI-AGTAVLLLDEH-GQE----------IAEPDRAGEIV----AFGA-G 369 (620)
T ss_dssp EEECCGGGCSCSEEEECCTGGGGSSSCCCBEEC-TTEEEEEECTT-SCB----------CCSSSCCEEEE----EEET-T
T ss_pred eeEchhhhhhheEEEeccccccCCCCCCceecc-cCcEEEEECcc-CCC----------CCCCCCceEEE----Eecc-c
Confidence 999999999877643322111 11111222222 45667777765 322 24778888876 4588 4
Q ss_pred cccccCCch-HHHHHHhhcccCCCC--eEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeE
Q psy12852 860 HFYGYADKK-ESQKKILENVFKPGD--KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFT 936 (1102)
Q Consensus 860 ~~~gY~~~~-~t~~~f~~~~~~~g~--~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~ 936 (1102)
++.||+|++ .|.++|+.+|+. |. +||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|.+|+
T Consensus 370 v~~GY~~~p~~t~~~f~~~p~~-~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~ 448 (620)
T 4dg8_A 370 LAQGYRNDAARTRASFVELPYR-GRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448 (620)
T ss_dssp CCSEETTCHHHHHHHEEEEEET-TEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEE
T ss_pred cccccCCChhhhhhhhccCCCC-CCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEE
Confidence 889999987 788999888753 33 89999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCce
Q psy12852 937 VYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDL 1016 (1102)
Q Consensus 937 vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~ 1016 (1102)
|++.+++ .....+++++.. .++++++|+++||.||+|+.|+++++||+|+||||||++|++........
T Consensus 449 Vv~~~~~--~~~~lv~~~~~~-----~~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~---- 517 (620)
T 4dg8_A 449 LLVRERN--GVKQLLCAWTGK-----ADASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPLER---- 517 (620)
T ss_dssp EEEEEET--TEEEEEEEEEEC-----TTCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC------
T ss_pred EEEEeCC--CceEEEEEEecC-----hHHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccccccc----
Confidence 9986554 233334444422 22345677888999999999999999999999999999998876443211
Q ss_pred EEEcCCceeecCHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhC--CCCccceEEEEeccccccc
Q psy12852 1017 YVRQGSEFVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFK--PGDKYFLSVIIRNFSLDVM 1094 (1102)
Q Consensus 1017 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~--~g~~l~~~~l~~~pti~~l 1094 (1102)
. ....+..|+.+..+|+++|+. +.++.+||||++|||||+|+||+++|++ .|+.+++.+||+||||++|
T Consensus 518 ~--------~~~~~~~e~~l~~iw~~vL~~-~~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~l~~~~~f~~pti~~l 588 (620)
T 4dg8_A 518 C--------ASALDPDQRGCAQLWSELLGC-EVGAADQDFFLCGGNSLLALQLVALCQSAGAGANLGLADLQANSRLDQF 588 (620)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c--------cCCCCHHHHHHHHHHHHHhCC-CCCCCCCChhhccCcHHHHHHHHHHHHhhCCCCCcCHHHHhcCCCHHHH
Confidence 0 111223567788899999998 8899999999999999999999999988 4999999999999999999
Q ss_pred cCC
Q psy12852 1095 APP 1097 (1102)
Q Consensus 1095 aa~ 1097 (1102)
|+.
T Consensus 589 a~~ 591 (620)
T 4dg8_A 589 SRL 591 (620)
T ss_dssp ---
T ss_pred HHH
Confidence 975
No 3
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.5e-83 Score=790.69 Aligned_cols=572 Identities=15% Similarity=0.169 Sum_probs=456.7
Q ss_pred hhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 479 VDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 479 ~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
.+.+++.+++. +|+ |+++|+++++. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+|+|+
T Consensus 25 ~~~~l~~~~~~--~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~ 100 (617)
T 3rg2_A 25 QDLPLTDILTR--HAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV 100 (617)
T ss_dssp CCCCTTHHHHT--TTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred CcCCHHHHHHH--hhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCe
Confidence 33445555554 455 99999998775 999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKP 630 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1102)
+|||++|.+|.+++.++++++++++++++.... ..........+....+...... ....+.+......... .
T Consensus 101 ~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~ 177 (617)
T 3rg2_A 101 APVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDS-GEHNLQDAINHPAEDF--T 177 (617)
T ss_dssp EEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCC-STTBHHHHHHSCCSSC--C
T ss_pred EEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccc-cccchhhhhccccccc--C
Confidence 999999999999999999999999999987654 3333333344444433332211 1223333333222221 1
Q ss_pred CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHH-HHHHhHhhcCceEEE
Q psy12852 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGL-IGTIPALILGSSIAI 709 (1102)
Q Consensus 631 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~-~~i~~~l~~G~~lv~ 709 (1102)
.....++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|.++.. ++++.+++.|+++++
T Consensus 178 ~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 178 ATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp CCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 2456789999999999999999999999999999999999999999999999999999887743 379999999999999
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccC----CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE----SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~----~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 785 (1102)
.+..++..+++.++++++|++.++|+++..++.... .....+++.+++|||++++++.++|.+.++. +++|.||+
T Consensus 258 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~-~~~~~YG~ 336 (617)
T 3rg2_A 258 AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC-QLQQVFGM 336 (617)
T ss_dssp CSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS-EEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC-cEEEEecc
Confidence 998999999999999999999999999999876432 2245678999999999999999999998865 89999999
Q ss_pred ccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 786 TEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 786 TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
||+++.++........ .....+.|.. ....+.++|++ | +++|.|++||++ +.|| .++.||+
T Consensus 337 tE~~~~~~~~~~~~~~-~~~~~G~p~~-~~~~~~i~d~~-~-----------~~~p~G~~GEl~----i~G~-~v~~GY~ 397 (617)
T 3rg2_A 337 AEGLVNYTRLDDSAEK-IIHTQGYPMC-PDDEVWVADAE-G-----------NPLPQGEVGRLM----TRGP-YTFRGYY 397 (617)
T ss_dssp TTEEEEECCTTSCHHH-HHHCCCEESC-TTCEEEEECTT-S-----------CBCCTTCCEEEE----EECS-SSCSCCT
T ss_pred CcceeecccCCCcccc-cccCCCccCC-CCceEEEECCC-C-----------CCCCCCCceEEE----ecCc-cccchhc
Confidence 9998766544322110 0011111111 23456666654 3 356889888876 5588 4889999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
|++ .|.++|.. ++||||||+|++++||+|+|+||+|||||++|+||+|+|||++|.+||+|.+|+|++.+++.
T Consensus 398 ~~p~~t~~~f~~------~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~ 471 (617)
T 3rg2_A 398 KSPQHNASAFDA------NGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDEL 471 (617)
T ss_dssp TCHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred CChhhhhhccCC------CCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcc
Confidence 997 67777743 68999999999999999999999999999999999999999999999999999999866553
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCc
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSE 1023 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~ 1023 (1102)
+...+++++......+.+++++++++ .||.||+|..|+++++||+|+||||||++|+++....... ...
T Consensus 472 --~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~~~~--------~~~ 541 (617)
T 3rg2_A 472 --MGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASRASA--------GRA 541 (617)
T ss_dssp --TEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHHHHH--------SSS
T ss_pred --cCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhccccc--------ccc
Confidence 33445555544457889999999998 6999999999999999999999999999998764321100 000
Q ss_pred eeecCHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1024 FVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1024 ~~~~~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.... .++.+..+|.++|+..+.++.+||||++|||||+||+|+++|++.+..+++.+||+||||++||+.
T Consensus 542 ~~~~----~~~~l~~~~~~~l~~~~~~~~~d~Ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~pti~~la~~ 611 (617)
T 3rg2_A 542 SIPA----SKAALREVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWKL 611 (617)
T ss_dssp CCCC----SHHHHHHHHGGGSCTTCCCCTTSCGGGGTCCHHHHHHHHHHHHTTSTTCCHHHHHHSCCHHHHHHH
T ss_pred cccc----cHHHHHHHHHHHhccCCCCCCCCChhhcCccHHHHHHHHHHHHHhcCCCCHHHHhcCCCHHHHHHH
Confidence 0001 234455567777764468999999999999999999999999999999999999999999999863
No 4
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=8.4e-76 Score=712.45 Aligned_cols=547 Identities=18% Similarity=0.197 Sum_probs=411.6
Q ss_pred CCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHH
Q psy12852 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARIL 522 (1102)
Q Consensus 446 ~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L 522 (1102)
++++..|+++..++++|+++++..+|.+...++...++..+++. +++++|+++|+++.+. |+||.++++++|+.|
T Consensus 4 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~l~~--~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L 81 (563)
T 1amu_A 4 SSKSILIHAQNKNGTHEEEQYLFAVNNTKAEYPRDKTIHQLFEE--QVSKRPNNVAIVCENEQLTYHELNVKANQLARIF 81 (563)
T ss_dssp -------------CCCHHHHHHHHTTCCCCCCCTTCCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHH
T ss_pred cCCCccccccccCCHHHHHHHHHHhCCCCCCCCCCCcHHHHHHH--HHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHH
Confidence 37888999999999999999998999888888766556565555 6899999999987654 999999999999999
Q ss_pred HHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCce
Q psy12852 523 QDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK 602 (1102)
Q Consensus 523 ~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 602 (1102)
++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|.+++.+++++++++++|++......+..+. ....
T Consensus 82 ~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~---~~~~ 158 (563)
T 1amu_A 82 IEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQ---FNGQ 158 (563)
T ss_dssp HHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSC---CCSE
T ss_pred HHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhcc---ccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999986654332211 1123
Q ss_pred EEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEE
Q psy12852 603 LFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682 (1102)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l 682 (1102)
+..++... + ..... ........++|++||+|||||||.||||++||+++.+.+.+....++++++|+++
T Consensus 159 ~~~~~~~~-----~----~~~~~--~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l 227 (563)
T 1amu_A 159 VEIFEEDT-----I----KIREG--TNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIG 227 (563)
T ss_dssp EEECCCST-----T----TTSCC--SCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred eeeecchh-----h----ccccC--ccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEE
Confidence 33332210 0 00011 1111345678999999999999999999999999999988888889999999999
Q ss_pred EecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeec
Q psy12852 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIG 759 (1102)
Q Consensus 683 ~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~G 759 (1102)
+++|++|+.+ ++.++.+|+.|+++++.+. +++..+++.++++++|++.++|+++..|... ...+++.+++||
T Consensus 228 ~~~p~~~~~~-~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~----~~~~lr~~~~gG 302 (563)
T 1amu_A 228 QFASISFDAS-VWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE----RILSIQTLITAG 302 (563)
T ss_dssp ECSCTTSTHH-HHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT----TCCSCSEEEEES
T ss_pred EeCCccHHHH-HHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc----ccccccEEEEEE
Confidence 9999999988 7789999999999999876 6899999999999999999999999877443 345788889999
Q ss_pred cCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccc
Q psy12852 760 VGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839 (1102)
Q Consensus 760 e~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~ 839 (1102)
+++++++.++|.+. .+++|.||+||++++++.........+...+.+.+. .+..+.++|++ |. +
T Consensus 303 ~~l~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~-~~~~v~i~d~~-~~-----------~ 366 (563)
T 1amu_A 303 SATSPSLVNKWKEK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPI-QNTQIYIVDEN-LQ-----------L 366 (563)
T ss_dssp SCCCHHHHHHHTTT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEEC-TTEEEEEECTT-SC-----------B
T ss_pred ecCCHHHHHHHHhC---CeEEEEECcCHHhHhheeeecccccCCCCCccccee-CCCEEEEECCC-cC-----------C
Confidence 99999999999774 479999999999977664332221111222222222 45566667754 43 4
Q ss_pred ccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeec
Q psy12852 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918 (1102)
Q Consensus 840 ~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~ 918 (1102)
++.|++||++ ++|| .++.||++++ .|.++|..+++.+|++||+|||+|++|+||+|+|+||+||+||++|+||+
T Consensus 367 ~~~g~~GEl~----v~g~-~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~ 441 (563)
T 1amu_A 367 KSVGEAGELC----IGGE-GLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVE 441 (563)
T ss_dssp CCTTCEEEEE----EEET-TCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEE
T ss_pred CCCCCcEEEE----Eech-hhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeC
Confidence 5778877766 5588 5889999987 78888888888778899999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccch
Q psy12852 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998 (1102)
Q Consensus 919 ~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKid 998 (1102)
|.|||++|.+||+|.+|+|++.+++ .+...++++++.....+.++|+++|+++||.||+|..|+++++||+|+|||||
T Consensus 442 p~eIE~~l~~~p~V~~a~Vv~~~~~--~~~~~~~a~vv~~~~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~ 519 (563)
T 1amu_A 442 LEEVESILLKHMYISETAVSVHKDH--QEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKID 519 (563)
T ss_dssp HHHHHHHHTTSTTEEEEEEEEEECT--TSCEEEEEEEEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred HHHHHHHHHhCCCcceEEEEEeecC--CCCeEEEEEEEeCCCCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChh
Confidence 9999999999999999999986654 34455566665555678999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCcchhhh
Q psy12852 999 KIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPGMIIGE 1046 (1102)
Q Consensus 999 r~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 1046 (1102)
|++|++....... ...+. .+.+..|+.|..+|+++|+.
T Consensus 520 r~~L~~~~~~~~~--~~~~~--------~p~~~~e~~l~~iw~~~L~~ 557 (563)
T 1amu_A 520 RKQLPEPDLTFGM--RVDYE--------APRNEIEETLVTIWQDVLGS 557 (563)
T ss_dssp GGGSCCCCCCC-------------------------------------
T ss_pred HHhcCCccccccc--ccccC--------CCCCHHHHHHHHHHHHHhhh
Confidence 9999987543211 11111 22334677888889998887
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.8e-73 Score=684.34 Aligned_cols=497 Identities=22% Similarity=0.292 Sum_probs=411.9
Q ss_pred cccchhhhHHHHHHHHhhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 475 EQLEVDVTYSRFKQEASNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
...|...+++.++.. +++++|+++|+++.. +|+||+++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 16 ~~~p~~~~l~~~l~~--~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la 93 (536)
T 3ni2_A 16 IYIPKNLPLHSYVLE--NLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLG 93 (536)
T ss_dssp CCCCSSCCHHHHHTT--TGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHH--HhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 344444455555554 699999999998752 2999999999999999999999999999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCC
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1102)
|+++|++++|++|.++.+++.+++++++++++|++....+.+....... ..+++.++....+...+.++........
T Consensus 94 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (536)
T 3ni2_A 94 ASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES-DVKVMCVDSAPDGCLHFSELTQADENEA-- 170 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH-TCEEEESSCCCTTCEETHHHHTSCGGGC--
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc-CceEEEecCCCCCccCHHHHhhcccccc--
Confidence 9999999999999999999999999999999999998877776654332 3566776654444455555544332222
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh----ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCc
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH----LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~ 705 (1102)
+.....++|++||+|||||||.||||+++|+++.+.+..... .+++.++|++++.+|++|..++...++.+|..|+
T Consensus 171 ~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~ 250 (536)
T 3ni2_A 171 PQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGA 250 (536)
T ss_dssp CCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTC
T ss_pred ccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCC
Confidence 224567899999999999999999999999999887665433 4678899999999999999997788899999999
Q ss_pred eEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcc
Q psy12852 706 SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFY 783 (1102)
Q Consensus 706 ~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 783 (1102)
++++.+++++..+++.|+++++|++.++|+++..|++.... ....+++.+++|||++++++.++|.+.+++++++|.|
T Consensus 251 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 251 PILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp CEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred EEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 99999999999999999999999999999999999887543 2345788899999999999999999999877999999
Q ss_pred ccccCCcccccC--------CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec
Q psy12852 784 GATEGNANLVNM--------DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855 (1102)
Q Consensus 784 G~TE~~~~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~ 855 (1102)
|+||++.+++.. ....+++|.+. .+..+.++|+++|.+ +|.|++||++ ++
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----v~ 388 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVV-------RNAEMKIVDPETGAS-----------LPRNQPGEIC----IR 388 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEEC-------SSCEEEEECTTTCCB-----------CCTTCCEEEE----EE
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeC-------CCcEEEEEeCCCCcC-----------CCCCCccEEE----Ee
Confidence 999999765432 11233444432 455677778666644 4788888876 55
Q ss_pred CCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce
Q psy12852 856 DPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE 934 (1102)
Q Consensus 856 G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~ 934 (1102)
|| .++.||+|++ .|.+.|. +++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 389 g~-~v~~GY~~~p~~t~~~~~------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 461 (536)
T 3ni2_A 389 GD-QIMKGYLNDPEATSRTID------KEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISD 461 (536)
T ss_dssp ST-TSCSEETTCHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEE
T ss_pred Cc-ccchhhcCChhHHHhhcc------CCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcce
Confidence 88 5899999997 5555542 37899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 935 FTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 935 a~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
|+|++++++. .++..+++++ ..+...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|+++.
T Consensus 462 a~Vv~~~~~~-~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~ 533 (536)
T 3ni2_A 462 AAVVGLKDED-AGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533 (536)
T ss_dssp EEEEEEEETT-TEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC-
T ss_pred EEEEeeecCC-CCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHh
Confidence 9999977664 3444444444 334567889999999999999999999999999999999999999999864
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=2.3e-72 Score=682.26 Aligned_cols=497 Identities=20% Similarity=0.280 Sum_probs=374.4
Q ss_pred cchhhhHHHHHHHHhhcccCCcccchhhcc-----------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHH
Q psy12852 477 LEVDVTYSRFKQEASNARSTNDAAATTVKN-----------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 545 (1102)
Q Consensus 477 ~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~-----------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv 545 (1102)
++..+..+.|.+ +|+++|+++|+++.+ +|+||+++++++|+.|++.|+++|++|+|+++|++++++
T Consensus 16 ~~~~~l~~~l~~---~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 92 (549)
T 3g7s_A 16 YPKISLADRIDA---AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVM 92 (549)
T ss_dssp CCCCCTTHHHHH---HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred cCCCCHHHHHHH---HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHH
Confidence 334444555555 489999999998776 399999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCC
Q psy12852 546 VWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625 (1102)
Q Consensus 546 ~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1102)
++|||+++|++++|++|.+|.+++.+++++++++++|++....+.+.......+...++..+. ....+.+.......
T Consensus 93 ~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 169 (549)
T 3g7s_A 93 TIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGG---EVNSLSEVMDSGSE 169 (549)
T ss_dssp HHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTSCCCEEEEETC---SSSCHHHHHHHSCS
T ss_pred HHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhCCCcEEEEeCC---CCcCHHHHHhcCcc
Confidence 999999999999999999999999999999999999999988887777666555444555443 34456665554333
Q ss_pred CCCCCCCCCCC-CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcC
Q psy12852 626 SEVKPSEPLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG 704 (1102)
Q Consensus 626 ~~~~~~~~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G 704 (1102)
.... ....+ +|+|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.++..|
T Consensus 170 ~~~~--~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~-~~~~~~~l~~G 246 (549)
T 3g7s_A 170 DFEN--VKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAE-FGLVNLMVTVG 246 (549)
T ss_dssp CCCC--CCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHH-HHHHTTHHHHC
T ss_pred cccc--ccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHH-HHHHHHHHhcC
Confidence 2111 23334 89999999999999999999999999999999889999999999999999999998 55588999999
Q ss_pred ceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHH----hC-
Q psy12852 705 SSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKR----FH- 775 (1102)
Q Consensus 705 ~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~----~~- 775 (1102)
+++++.+.+++..+++.|+++++|+++++|++++.|+..... ....+++.+++||+++++++.++|.+. ++
T Consensus 247 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~ 326 (549)
T 3g7s_A 247 NEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNN 326 (549)
T ss_dssp CEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSC
T ss_pred ceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999875332 234578888999999999999999987 54
Q ss_pred -cchhhhccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEE
Q psy12852 776 -VQTIIEFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850 (1102)
Q Consensus 776 -~~~l~n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~g 850 (1102)
..+++|.||+||++++++.... ...++|.+. .++.+.++|+++|. +++.|++|||+
T Consensus 327 ~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~~g~-----------~~~~g~~GEl~- 387 (549)
T 3g7s_A 327 PRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPM-------SDIELKVISLEDGR-----------ELGVGESGEIV- 387 (549)
T ss_dssp TTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEEC-------TTCEEEEECSSSCC-----------EECTTCCEEEE-
T ss_pred ccccccceEeccccchhhhcCCccccCcCCCccccC-------CCCEEEEEeCCCCc-----------CCCCCCceEEE-
Confidence 2589999999999987764432 223344432 45566677756554 45888888876
Q ss_pred EEeecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc
Q psy12852 851 EIKQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929 (1102)
Q Consensus 851 ei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~ 929 (1102)
+.|| .++.||+|++ .|.++|+.+ .+|++||+|||+|++|+||.|+|+||+|||||++|+||+|.|||++|.+|
T Consensus 388 ---v~g~-~v~~GY~~~~~~t~~~f~~~--~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (549)
T 3g7s_A 388 ---IRGP-NIFKGYWKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKH 461 (549)
T ss_dssp ---EEST-TSCSEETTCTTGGGTSEEEC--TTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTS
T ss_pred ---EECc-chhhhhCCChhhhhhhhhcc--CCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhC
Confidence 4588 5899999987 676666432 24677999999999999999999999999999999999999999999999
Q ss_pred CCcceeEEEEEEcCCCCCceeEEEEEc-CC--CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 930 LPYTEFTVYGVKVGDLDGRAGMIAIVD-TS--NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 930 ~~V~~a~vv~~~~~~~~~~~~l~~~v~-~~--~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
|+|.+|+|++++++. .++...++++. ++ ...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++..
T Consensus 462 p~V~~a~Vv~~~~~~-~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~ 540 (549)
T 3g7s_A 462 EAVMDVAVIGKPDEE-AGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKE 540 (549)
T ss_dssp TTEEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC----------------
T ss_pred CCeeeEEEEeeEccc-cCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHh
Confidence 999999999855443 33444444442 32 457899999999999999999999999999999999999999999876
Q ss_pred CC
Q psy12852 1007 FD 1008 (1102)
Q Consensus 1007 ~~ 1008 (1102)
..
T Consensus 541 ~~ 542 (549)
T 3g7s_A 541 AE 542 (549)
T ss_dssp --
T ss_pred hc
Confidence 54
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=5e-71 Score=662.60 Aligned_cols=479 Identities=22% Similarity=0.257 Sum_probs=393.8
Q ss_pred hcccCCcccchh---hcc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCC
Q psy12852 492 NARSTNDAAATT---VKN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565 (1102)
Q Consensus 492 ~a~~~P~~~Av~---~~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p 565 (1102)
+++++|+++|+. +.+ +|+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|
T Consensus 9 ~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~~~~~ 88 (503)
T 4fuq_A 9 LFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYT 88 (503)
T ss_dssp HHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred HHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecCCCCC
Confidence 588899999887 232 29999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEEC
Q psy12852 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYT 645 (1102)
Q Consensus 566 ~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~T 645 (1102)
.+++.+++++++++++|++......+..+..... ..+..++... ...+......... ........++|++||+||
T Consensus 89 ~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~d~a~i~~T 163 (503)
T 4fuq_A 89 LHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-ATVETLGPDG--RGSLTDAAAGASE--AFATIDRGADDLAAILYT 163 (503)
T ss_dssp HHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT-CEEEECCTTS--CSHHHHHHHTSCS--CCCCCCCCTTSEEEEEEC
T ss_pred HHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC-ceEEEecCCc--ccccchhhhcCCC--CcCcCCCCCCCeEEEEEC
Confidence 9999999999999999999877665555443332 2344443221 1112222111111 112245678999999999
Q ss_pred CCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHHHHHhhc
Q psy12852 646 SGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKY 725 (1102)
Q Consensus 646 SGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~~~i~~~ 725 (1102)
|||||.||||+++|+++.+++.+....++++++|++++.+|++|..++...++.+++.|+++++.+++++..+++.++
T Consensus 164 SGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~-- 241 (503)
T 4fuq_A 164 SGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMA-- 241 (503)
T ss_dssp C--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTCEEEECSSCCHHHHHHHHT--
T ss_pred CCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEcCCCCHHHHHHHHh--
Confidence 999999999999999999999999999999999999999999999986677888999999999999999999999998
Q ss_pred ccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC---CCCC
Q psy12852 726 KCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD---NTEG 800 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~---~~~~ 800 (1102)
++|+++++|+++..|+...... ...+++.+++|||++++++.++|.+.++. +++|.||+||+++.++... ...+
T Consensus 242 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~~~~~~~~~ 320 (503)
T 4fuq_A 242 RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETNMNTSNPYDGDRVPG 320 (503)
T ss_dssp TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC-CEEECCEETTTEECBCCCSSSCCCTT
T ss_pred hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC-CccceEcccccCcccccCCCCCCcCC
Confidence 8999999999999998875432 24567888999999999999999999876 8999999999997765332 1233
Q ss_pred cccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc
Q psy12852 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF 879 (1102)
Q Consensus 801 ~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~ 879 (1102)
++|.+. .+..+.++|+++|.+ +|.|++||++ +.|| .++.||+|++ .|.++|..
T Consensus 321 ~~G~p~-------~~~~~~i~d~~~g~~-----------~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~~f~~--- 374 (503)
T 4fuq_A 321 AVGPAL-------PGVSARVTDPETGKE-----------LPRGDIGMIE----VKGP-NVFKGYWRMPEKTKSEFRD--- 374 (503)
T ss_dssp EEEEBC-------TTCEEEEECTTTCCB-----------CCTTCCEEEE----EEST-TSCCCBTTCHHHHHHTBCT---
T ss_pred ccccCC-------CCeEEEEEECCCCCC-----------CcCCCceEEE----EECC-chhhhhcCChhhhHhhhCC---
Confidence 444442 355667777665644 4888888876 5588 5899999987 56666632
Q ss_pred CCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCC
Q psy12852 880 KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTS 958 (1102)
Q Consensus 880 ~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~ 958 (1102)
++||+|||+|++++||.|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++++++. .++...++++ ..+
T Consensus 375 ---~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a~v~~~~~ 450 (503)
T 4fuq_A 375 ---DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHAD-FGEGVTAVVVRDKG 450 (503)
T ss_dssp ---TSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT-TEEEEEEEEEECTT
T ss_pred ---CCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchh-cCceeEEEEEeCCC
Confidence 68999999999999999999999999999999999999999999999999999999977664 3333333333 344
Q ss_pred CccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 959 NQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 959 ~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
...+.++++++|+++||.||+|+.|+++++||+|+||||||++|++.+.+
T Consensus 451 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 451 ATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp CCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999988654
No 8
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.7e-71 Score=669.63 Aligned_cols=487 Identities=18% Similarity=0.229 Sum_probs=394.4
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +|+++|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 26 tl~~~l~~--~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~v 103 (539)
T 1mdb_A 26 TFGDLLRD--RAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPV 103 (539)
T ss_dssp CHHHHHHH--HHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHH--HHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEe
Confidence 34444444 5889999999987654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
|++|.++.+++.+++++++++++|+++... ..+..+....+..+.+.+..... .+.++...... ......
T Consensus 104 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~ 178 (539)
T 1mdb_A 104 FALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAE---EFLPLEDLHTE--PVKLPE 178 (539)
T ss_dssp ECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCT---TSEEGGGCCCC--CCCCCC
T ss_pred cCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCcc---chhhhhhcccc--ccccCC
Confidence 999999999999999999999999987642 23334434444443333222111 12222221111 111235
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH-HHHhHhhcCceEEEeCC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI-GTIPALILGSSIAIRTK 712 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~i~~~l~~G~~lv~~~~ 712 (1102)
..++|++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++... .++.+|+.|+++++.++
T Consensus 179 ~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~ 258 (539)
T 1mdb_A 179 VKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPS 258 (539)
T ss_dssp CCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSS
T ss_pred CCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCC
Confidence 67899999999999999999999999999999988888899999999999999999998444 69999999999999999
Q ss_pred CCHhHHHHHHhhcccccccccHHHHHHHHhccC--CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCc
Q psy12852 713 FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790 (1102)
Q Consensus 713 ~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~ 790 (1102)
+++..+++.|+++++|++.++|+++..|++... .....+++.+++|||++++++.++|.+.++. +++|.||+||+++
T Consensus 259 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~ 337 (539)
T 1mdb_A 259 PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFGMAEGLV 337 (539)
T ss_dssp SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS-EEEEEEECTTSCE
T ss_pred CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC-cEEEEEcCCCCcc
Confidence 999999999999999999999999999987542 2334678889999999999999999998865 8999999999776
Q ss_pred ccccCCCC----CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 791 NLVNMDNT----EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 791 ~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
.++..... ..++|.+.+ ....+.++|++ | +++|.|++||++ ++|| .++.||+|
T Consensus 338 ~~~~~~~~~~~~~~~~G~p~~------~~~~~~i~d~~-~-----------~~~~~g~~GEl~----v~g~-~v~~GY~~ 394 (539)
T 1mdb_A 338 NYTRLDDPEEIIVNTQGKPMS------PYDESRVWDDH-D-----------RDVKPGETGHLL----TRGP-YTIRGYYK 394 (539)
T ss_dssp EECCTTSCHHHHHHCCCEESS------TTCEEEEECTT-S-----------CBCCTTCCEEEE----EECT-TSCSSCTT
T ss_pred cccCCCCcHHhcCCCCCcccC------CCceEEEECCC-C-----------CCCcCCCcceEE----eeCc-ccchhhcC
Confidence 55432211 123343321 11245556644 4 345888888866 5588 58999999
Q ss_pred ch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 867 KK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 867 ~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
++ .|.++|.. ++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++++++.
T Consensus 395 ~~~~t~~~f~~------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~- 467 (539)
T 1mdb_A 395 AEEHNAASFTE------DGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQF- 467 (539)
T ss_dssp CHHHHHHHBCT------TSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT-
T ss_pred ChhhhhhhccC------CCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccc-
Confidence 97 56666643 68999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCceeEEEEEcCCCccCHHHHHHHHHcc-CCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 946 DGRAGMIAIVDTSNQVDLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 946 ~~~~~l~~~v~~~~~~~~~~l~~~l~~~-Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
.++..+++++..+...+.++|+++|+++ ||.||+|+.|+++++||+|+||||||++|++..
T Consensus 468 ~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 529 (539)
T 1mdb_A 468 LGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAI 529 (539)
T ss_dssp TEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHH
T ss_pred cCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHH
Confidence 3444444444444567889999999998 999999999999999999999999999998753
No 9
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.3e-71 Score=666.47 Aligned_cols=495 Identities=23% Similarity=0.260 Sum_probs=393.9
Q ss_pred HhhccccccchhhhHHHHHHHHhhcccCCcccchhhcch-----HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhH
Q psy12852 469 QLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNL-----EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 543 (1102)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~~-----Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~ 543 (1102)
+++......+...++..+++. +|+++|+++|+++.+. |+||+++++++|+.|++.|+++|++|+|+++|++++
T Consensus 4 ~~~~~~~~~~~~~~l~~~l~~--~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~ 81 (517)
T 3r44_A 4 HHHHHVDDDDKMKNIGWMLRQ--RATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF 81 (517)
T ss_dssp --------CGGGGCHHHHHHH--HHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH
T ss_pred cccccCCCcccccCHHHHHHH--HHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH
Confidence 344555556666666666665 6999999999986543 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhcc
Q psy12852 544 VGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKT 622 (1102)
Q Consensus 544 vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 622 (1102)
++++|||+++|++++|++|.+|.+++.+++++++++++|++......+..+....+.. .++.+.. ...+.+....
T Consensus 82 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 157 (517)
T 3r44_A 82 CCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVTDWIG----ADSLAERLRS 157 (517)
T ss_dssp HHHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSSCCTTCCEEEE----HHHHHHHHHH
T ss_pred HHHHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccCCccEEEEccC----cccHHHHhhc
Confidence 9999999999999999999999999999999999999999998887777665443321 1111110 0122233332
Q ss_pred CCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 623 ~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
..... +.....++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.+++
T Consensus 158 ~~~~~--~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~~~ 234 (517)
T 3r44_A 158 AAADE--PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAA-LTTVIFSAM 234 (517)
T ss_dssp CCCCC--CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHH-HHHHHHHHH
T ss_pred cCcCC--CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHH-HHHHHHHHh
Confidence 22222 224567899999999999999999999999999999999899999999999999999999998 555555555
Q ss_pred cCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhh
Q psy12852 703 LGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780 (1102)
Q Consensus 703 ~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~ 780 (1102)
.|+++++.+.+++..+++.|+++++|++.++|++++.|...+.. ....+++.+++|||++++++.++|.+. +++++
T Consensus 235 ~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 235 RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp HTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred cCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999999999999999999999999999999999999876432 233577888999999999999999886 44899
Q ss_pred hccccccCCcccccCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec
Q psy12852 781 EFYGATEGNANLVNMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855 (1102)
Q Consensus 781 n~YG~TE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~ 855 (1102)
|.||+||+++.++... ...+++|.+. ....+.++|++ |.+ ++.| + |||++.
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~-~~~-----------~~~g-~----GEl~v~ 368 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRAT-------MFTDVAVRGDD-GVI-----------REHG-E----GEVVIK 368 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEEC-------TTEEEEEECTT-SCE-----------ESSE-E----EEEEEE
T ss_pred EeecccccccceeecCCccccccCCCCCcCC-------CCeEEEEECCC-CCC-----------CCCC-C----eEEEEe
Confidence 9999999987665332 2233444432 33445555543 432 3444 4 455577
Q ss_pred CCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce
Q psy12852 856 DPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE 934 (1102)
Q Consensus 856 G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~ 934 (1102)
|| .++.||+++| .|.++|. ++||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 369 g~-~v~~GY~~~p~~t~~~f~-------~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~ 440 (517)
T 3r44_A 369 SD-ILLKEYWNRPEATRDAFD-------NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSE 440 (517)
T ss_dssp ET-TSCSEETTCHHHHHHTEE-------TTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEE
T ss_pred Cc-chhhhhCCChhhhHhhhc-------CCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeE
Confidence 88 5899999997 5555552 6899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 935 FTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 935 a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
|+|++++++. .++...++++..+...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++.+.
T Consensus 441 ~~Vv~~~~~~-~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 512 (517)
T 3r44_A 441 VAVIGLPDEK-WGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYS 512 (517)
T ss_dssp EEEEEEEETT-TEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHG
T ss_pred EEEEeccccc-cCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHH
Confidence 9999977664 34444444445556788999999999999999999999999999999999999999998753
No 10
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.9e-70 Score=655.90 Aligned_cols=472 Identities=21% Similarity=0.254 Sum_probs=380.9
Q ss_pred hcccCCcccchhhc--ch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTVK--NL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~--~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++|+.+. +. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|.
T Consensus 11 ~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl~~~~~~ 90 (504)
T 1t5h_X 11 AATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKS 90 (504)
T ss_dssp HHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEECTTSCH
T ss_pred HHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCccCh
Confidence 58899999999875 32 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEE--cCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccC---CCCCCCCCCCCCCCCeEE
Q psy12852 567 QPLVHSISTVKSKAIIV--SALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT---PASEVKPSEPLQTSDSLL 641 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~a~ 641 (1102)
+++.+++++++++++|+ +....+.+. ...+..+++.++ ++.... ............+++++|
T Consensus 91 ~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~a~ 157 (504)
T 1t5h_X 91 AELAELIKRGEMTAAVIAVGRQVADAIF---QSGSGARIIFLG----------DLVRDGEPYSYGPPIEDPQREPAQPAF 157 (504)
T ss_dssp HHHHHHHHHTTCSEEEECC--CHHHHHH---HHCCCCEEEEGG----------GTEETTEECCCSCCCCCCCCCTTSEEE
T ss_pred HHHHHHHhhcCCcEEEEecchhhhhhhh---hccccceeEEec----------chhhcCcccccCCccCCCCCCCCCeEE
Confidence 99999999999999999 665444331 112334433322 222111 001111113457899999
Q ss_pred EEECCCCCCCCceEEeccHHHHHhhhhhhhccCC--CCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHH
Q psy12852 642 YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSL--GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYF 719 (1102)
Q Consensus 642 ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~--~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~ 719 (1102)
|+|||||||.||||+++|+++.+.+.+....+++ +++|++++.+|++|+.++...++.++..|+++++.+++++..++
T Consensus 158 i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~ 237 (504)
T 1t5h_X 158 IFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL 237 (504)
T ss_dssp EEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHH
T ss_pred EEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHH
Confidence 9999999999999999999999998888888888 88999999999999999657899999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHHHHhcc-C---CccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC
Q psy12852 720 RDCAKYKCNAGIYIGEMCRYLLASK-E---SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795 (1102)
Q Consensus 720 ~~i~~~~vt~~~~~Ps~~~~l~~~~-~---~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 795 (1102)
+.|+++++|+++++|++++.|+... . .....+++.+++|||++++++.++|.+.++. .++|.||+||+++.....
T Consensus 238 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~~~~~~~ 316 (504)
T 1t5h_X 238 QLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMR 316 (504)
T ss_dssp HHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS-EEEEEEEETTTEEEEEEE
T ss_pred HHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc-ceeeeecccccccccccc
Confidence 9999999999999999999998754 1 2234678889999999999999999999875 899999999994333322
Q ss_pred CCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec-CCcccccccCCch-HHHHH
Q psy12852 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS-DPSRHFYGYADKK-ESQKK 873 (1102)
Q Consensus 796 ~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~-G~~~~~~gY~~~~-~t~~~ 873 (1102)
....++.|.+. ....+.++|++.+ ..++++.|+.||++ +. |+ .++.||+|++ .|.++
T Consensus 317 ~~~~~~~g~p~-------~~~~~~i~~~~~~---------~~~~~~~g~~GEl~----v~gg~-~~~~GY~~~~~~t~~~ 375 (504)
T 1t5h_X 317 QPKTGTEMAPG-------FFSEVRIVRIGGG---------VDEIVANGEEGELI----VAASD-SAFVGYLNQPQATAEK 375 (504)
T ss_dssp SCSSSSEEBCC-------TTCCEEEECTTSC---------TTCBCCTTCCEEEE----EECCT-TSCCCBTTCHHHHHHH
T ss_pred CCCCCccccCC-------CCCceeEEeccCC---------CCCcCCCCCcceEE----EeCCc-eeeceecCCchhhhhh
Confidence 33344455442 2334445554421 12456888888876 44 56 5889999997 56666
Q ss_pred HhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEE
Q psy12852 874 ILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA 953 (1102)
Q Consensus 874 f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~ 953 (1102)
| . ++||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++++++. .++...++
T Consensus 376 f-~------~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~-~g~~~~a~ 447 (504)
T 1t5h_X 376 L-Q------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQR-WGQSVTAC 447 (504)
T ss_dssp E-E------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSS-SSEEEEEE
T ss_pred h-c------CCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCC-CCcEEEEE
Confidence 5 2 57999999999999999999999999999999999999999999999999999999976654 34444444
Q ss_pred EE-cCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcC
Q psy12852 954 IV-DTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006 (1102)
Q Consensus 954 ~v-~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~ 1006 (1102)
++ ..+...+.++|++++++ +||.||+|+.|+++++||+|+||||||++|++.+
T Consensus 448 vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 502 (504)
T 1t5h_X 448 VVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (504)
T ss_dssp EEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred EEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence 44 23345788999999999 9999999999999999999999999999998753
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=3.4e-70 Score=665.03 Aligned_cols=495 Identities=20% Similarity=0.234 Sum_probs=382.9
Q ss_pred hHHHHHHHHhhcccCCcccchhhc--------chHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHc
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVK--------NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~--------~~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~a 553 (1102)
+...+++. +|+++|+++|+++. -+|+||.++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 57 ~~~~~l~~--~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~ 134 (580)
T 3etc_A 57 FAYDVVDV--YARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKL 134 (580)
T ss_dssp HHHHTHHH--HHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhC
Confidence 33344444 58899999999862 139999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCCchhhhhhhhccCceEEEEcCcch--hHHHHHHhcCCC--ceEEEecCC-CCCCCChhHhhccCCCCCC
Q psy12852 554 GVISALINTNLKKQPLVHSISTVKSKAIIVSALYY--PEIEAIRESIPD--VKLFLLDET-KPDLPNLSDLMKTTPASEV 628 (1102)
Q Consensus 554 G~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~--~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 628 (1102)
|++++|++|.++.+++.+++++++++++|++.+.. ..+.......+. ..++.++.. ..++..+.+..........
T Consensus 135 Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (580)
T 3etc_A 135 GAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEESSPIFE 214 (580)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHCSCCCEEEEESSSCCTTCEEHHHHHHHSCSCCC
T ss_pred CEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCCCcceEEEEeCCccccccccHHHHHhhCCcccc
Confidence 99999999999999999999999999999988765 555555444433 334444432 2344556555544333221
Q ss_pred CC--CCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCce
Q psy12852 629 KP--SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706 (1102)
Q Consensus 629 ~~--~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~ 706 (1102)
.+ .....++|++||+|||||||.||||+++|+++...+......+++.+++++++.+|++|+.+....++.++..|++
T Consensus 215 ~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~ 294 (580)
T 3etc_A 215 RPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCA 294 (580)
T ss_dssp CCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCE
T ss_pred cCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcE
Confidence 11 1246789999999999999999999999999988887777778899999999999999998856678899999999
Q ss_pred EEEe--CCCCHhHHHHHHhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhcc
Q psy12852 707 IAIR--TKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFY 783 (1102)
Q Consensus 707 lv~~--~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 783 (1102)
+++. ..+++..+++.|+++++|+++++|++++.|+..... ....+++.+++|||++++++.++|.+.++. +++|.|
T Consensus 295 ~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~-~i~~~Y 373 (580)
T 3etc_A 295 VFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGF 373 (580)
T ss_dssp EEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC---CCTTCCEEEECSSCCCHHHHHHHHHHHSC-CCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcccccCCCccceEEEEccCCCCHHHHHHHHHHhCC-eEeccc
Confidence 9998 458999999999999999999999999999876432 233578889999999999999999998875 899999
Q ss_pred ccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe-ecCCcc
Q psy12852 784 GATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK-QSDPSR 859 (1102)
Q Consensus 784 G~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~-~~G~~~ 859 (1102)
|+||+++.++..+. ..+++|++. ..+.+.++|++ | +++|.|++|||+++.. +.++ .
T Consensus 374 G~TE~~~~~~~~~~~~~~~~~~G~p~-------~~~~v~ivd~~-g-----------~~~~~g~~GEl~v~~~~g~~~-~ 433 (580)
T 3etc_A 374 GQTETVVTIATFPWMEPKPGSIGKPT-------PGYKIELMDRD-G-----------RLCEVGEEGEIVINTMEGKPV-G 433 (580)
T ss_dssp CCTTSSCCEECCTTSCCCTTCCBEEC-------TTCEEEEECTT-S-----------CBCCTTCCEEEEEECTTCCCT-T
T ss_pred ccccccceeecCCCCCCCCCccccCC-------CCCEEEEECCC-C-----------CCCCCCCceEEEEecCCCCCC-e
Confidence 99999887765432 344555543 34556677765 4 3458899999884411 1114 5
Q ss_pred cccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEE
Q psy12852 860 HFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVY 938 (1102)
Q Consensus 860 ~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv 938 (1102)
++.||+++| .|.+.|. ++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|+
T Consensus 434 ~~~gY~~~p~~t~~~f~-------~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vv 506 (580)
T 3etc_A 434 LFVHYGKDPERTEETWH-------DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAIT 506 (580)
T ss_dssp CCCEETTCHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEE
T ss_pred eeccccCCHhHHHhhcC-------CCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEE
Confidence 889999997 5555552 67999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCceeEEEEEcCCC-c---cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCC
Q psy12852 939 GVKVGDLDGRAGMIAIVDTSN-Q---VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 939 ~~~~~~~~~~~~l~~~v~~~~-~---~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
+++++. .++...++++.... . ...++|+++++++||.||+|+.|+++++||+|+||||||++|+++..
T Consensus 507 g~~~~~-~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 507 GVPDPV-RGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp EEEETT-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------------
T ss_pred eeeccC-CCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 987764 34444444443222 2 23578999999999999999999999999999999999999998753
No 12
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=3.7e-71 Score=670.38 Aligned_cols=492 Identities=17% Similarity=0.213 Sum_probs=311.4
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +|+++|+++|+++.+. |+||+++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++
T Consensus 31 tl~~~l~~--~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 108 (544)
T 3o83_A 31 PLTRILTV--GVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVL 108 (544)
T ss_dssp CTTHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHH--HHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEe
Confidence 34444444 5999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcch-----hHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
|+++.++.+++.+++++++++++|++.... .....+....+.. .++..+.. .....+.++....... .....
T Consensus 109 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 186 (544)
T 3o83_A 109 NALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQ-ATDFGLLDWIETPAET-FVDFS 186 (544)
T ss_dssp ECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCC-TTSEEHHHHHHSCCSS-CCCCC
T ss_pred cCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCC-ccccchhhhhhccccc-ccccc
Confidence 999999999999999999999999987654 3334444333333 33333322 1122233333322221 11124
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHH-HHHhHhhcCceEEEeC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLI-GTIPALILGSSIAIRT 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~-~i~~~l~~G~~lv~~~ 711 (1102)
...+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++... .++.+|..|+++++.+
T Consensus 187 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~ 266 (544)
T 3o83_A 187 STPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAP 266 (544)
T ss_dssp CCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECS
T ss_pred cCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECC
Confidence 567899999999999999999999999999999999999999999999999999999887443 6899999999999999
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
++++..+++.|+++++|++.++|+++..|++.... ....+++.+++|||++++++.++|.+.++. +++|.||+||++
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~-~~~~~YG~TE~~ 345 (544)
T 3o83_A 267 NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KLQQVFGMAEGL 345 (544)
T ss_dssp SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS-EEEEEEECTTSC
T ss_pred CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC-cEEeeecccccc
Confidence 99999999999999999999999999999876543 234578889999999999999999999865 899999999998
Q ss_pred cccccCCCCC----CcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 790 ANLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 790 ~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
+.++...... .++|.+. . ....+.++|++ |. ++|.|++||++ ++|| .++.||+
T Consensus 346 ~~~~~~~~~~~~~~~~~G~p~-----~-~~~~~~i~d~~-~~-----------~~~~g~~GEl~----v~g~-~v~~GY~ 402 (544)
T 3o83_A 346 VNYTRLDDSDEQIFTTQGRPI-----S-SDDEIKIVDEQ-YR-----------EVPEGEIGMLA----TRGP-YTFCGYY 402 (544)
T ss_dssp EEECCTTSCHHHHHHCCCEES-----C-TTCEEEEECTT-SC-----------BCCTTCCEEEE----EECT-TSCSCCT
T ss_pred ceeecCCCchhhccCCCceec-----C-CCcEEEEECCC-CC-----------CCCCCCeeEEE----EecC-Ccchhhc
Confidence 6655433211 2233321 1 33455566643 43 45888888876 5588 4889999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
+++ .|.++|. .++||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++++++.
T Consensus 403 ~~~~~t~~~f~------~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~ 476 (544)
T 3o83_A 403 QSPEHNSQVFD------EDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQ 476 (544)
T ss_dssp TCHHHHHHHBC------TTCCEEEEEEEEECTTSCEEEEEEEC-------------------------------------
T ss_pred CChhhhhhhCC------CCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCC
Confidence 997 5666653 278999999999999999999999999999999999999999999999999999999866554
Q ss_pred CCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 945 ~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
.++..+++++..+...+.+++++++++ +||.||+|+.|+++++||+|+||||||++|+++...
T Consensus 477 -~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 477 -FGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -----------------------------------------------------------------
T ss_pred -CCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 344445555544455778889999999 799999999999999999999999999999987543
No 13
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.4e-71 Score=671.72 Aligned_cols=476 Identities=17% Similarity=0.171 Sum_probs=307.9
Q ss_pred hhHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceE
Q psy12852 481 VTYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 557 (1102)
Q Consensus 481 ~~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~ 557 (1102)
.+++.+++. +|+++|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|+++
T Consensus 75 ~~l~~~l~~--~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 75 ACVHELFEA--QAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CCHHHHHHH--HHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHH--HHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 345555554 6999999999998765 99999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCC
Q psy12852 558 ALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637 (1102)
Q Consensus 558 vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1102)
+|++|.++.+++.+++++++++++|++...... +.....+.+.+.. ... ...........++
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~ 214 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------LTGTTTLYVEDEA---------ASD--APAGNLATGVGPE 214 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------SCSSEEEECCC------------------CCCCCCCCCTT
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------ccCCcceeeeccc---------ccc--ccccccCCCCCCC
Confidence 999999999999999999999999998765432 2222222222110 000 0111122456789
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC--CCH
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK--FSA 715 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~--~~~ 715 (1102)
|++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++++|++|+.+ .+.++.+++.|+++++.+. +++
T Consensus 215 d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~v~~~~~~~~~ 292 (570)
T 4gr5_A 215 DVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAF-GLELFGALLFGARCVLQSGQNPDP 292 (570)
T ss_dssp SEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTH-HHHHHHHHTTTCEEEECSSSSCCH
T ss_pred CeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHH-HHHHHHHHhcCCEEEEcCCccCCH
Confidence 9999999999999999999999999887665 45678999999999999999876 7889999999999999874 789
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccC
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~ 795 (1102)
..+++.|+++++|++.++|++++.|++... ....+++.+++|||++++++.+++.+.+++++++|.||+||++++++..
T Consensus 293 ~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~ 371 (570)
T 4gr5_A 293 LEIGELVARHGVTMLQLSASLFNFLVDEVP-EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHH 371 (570)
T ss_dssp HHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEE
T ss_pred HHHHHHHHHcCCcEEEecHHHHHHHHhhch-hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeee
Confidence 999999999999999999999999987543 3456789999999999999999999999877999999999998876543
Q ss_pred CC-------CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch
Q psy12852 796 DN-------TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868 (1102)
Q Consensus 796 ~~-------~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~ 868 (1102)
.. ...++|.+. ....+.++|++ |. +++.|++|||+ ++|| .++.||++++
T Consensus 372 ~~~~~~~~~~~~~iG~p~-------~~~~v~i~d~~-~~-----------~~~~G~~GEl~----v~g~-~v~~GY~~~~ 427 (570)
T 4gr5_A 372 AVVAGDLSGTALPIGVPL-------AGKRAYVLDDD-LK-----------PAANGALGELY----VAGA-GLAHGYVSRP 427 (570)
T ss_dssp ECCGGGTTSSSCCCBEEC-------TTEEEEEECTT-SC-----------BCCTTCEEEEE----EEET-TCCCEETTCH
T ss_pred eecccccCCCccccceee-------CCCEEEEECCC-CC-----------CCCCCCcEEEE----Eeec-ccchhcCCCc
Confidence 22 112233332 45566667754 43 45778877766 5588 5899999987
Q ss_pred -HHHHHHhhcccC--CCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 869 -ESQKKILENVFK--PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 869 -~t~~~f~~~~~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
.|.++|..+++. ++++||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+|+|++.+++.
T Consensus 428 ~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~- 506 (570)
T 4gr5_A 428 ALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRL- 506 (570)
T ss_dssp HHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------------
T ss_pred hhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCC-
Confidence 788889887774 4679999999999999999999999999999999999999999999999999999999855443
Q ss_pred CCceeEEEEEcC---CCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhc
Q psy12852 946 DGRAGMIAIVDT---SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005 (1102)
Q Consensus 946 ~~~~~l~~~v~~---~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~ 1005 (1102)
+...++++++. ....+.++|+++|+++||.||+|..|+++++||+|+||||||++|++.
T Consensus 507 -~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 507 -GDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp ---------------------------------------------------------------
T ss_pred -CCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 33344444432 234678899999999999999999999999999999999999999875
No 14
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3e-69 Score=653.77 Aligned_cols=483 Identities=19% Similarity=0.229 Sum_probs=394.0
Q ss_pred hcccCCcccchhhc--c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 492 NARSTNDAAATTVK--N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~--~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+++++ +++|+++. + +|+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+++|++++|++|.++.
T Consensus 35 ~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~ 113 (548)
T 2d1s_A 35 RYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113 (548)
T ss_dssp HHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCH
T ss_pred hhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCH
Confidence 37778 99999862 2 299999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCC-CceEEEecCCC--CCCCChhHhhccCCCCCCCCCCCC------CCC
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETK--PDLPNLSDLMKTTPASEVKPSEPL------QTS 637 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 637 (1102)
+++.+++++++++++|++....+.+.......+ ...++.++... .....+.++........... ... .++
T Consensus 114 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 192 (548)
T 2d1s_A 114 RELVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQA-SSFKTVEVDRKE 192 (548)
T ss_dssp HHHHHHHHHHCCSEEEECTTTHHHHHHHHHHSTTCCEEEETTCSSCBTTBCBHHHHHHHTSCTTCCG-GGCCCCCCCTTT
T ss_pred HHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCCCCCEEEEeCCcccccccccHHHHHhcCccccCCc-ccccccccCCCC
Confidence 999999999999999999988777666554444 24555554321 11233555544321110100 111 238
Q ss_pred CeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc---cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCC
Q psy12852 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFS 714 (1102)
Q Consensus 638 ~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~ 714 (1102)
+++||+|||||||.||||++||+++.+.+.+.... ++++++|++++++|++|+.++...++.++ .|+++++.++++
T Consensus 193 d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~ 271 (548)
T 2d1s_A 193 QVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFD 271 (548)
T ss_dssp CEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCC
T ss_pred CEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCC
Confidence 99999999999999999999999999988777766 78899999999999999998545567777 999999999999
Q ss_pred HhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccc
Q psy12852 715 ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792 (1102)
Q Consensus 715 ~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~ 792 (1102)
+..+++.|+++++|+++++|++++.|++..... ...+++.+++|||++++++.++|.+.+++.+++|.||+||++..+
T Consensus 272 ~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~ 351 (548)
T 2d1s_A 272 EETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAI 351 (548)
T ss_dssp HHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEE
T ss_pred HHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcCCCceeecccccccccee
Confidence 999999999999999999999999998765432 345778889999999999999999999777899999999998776
Q ss_pred ccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-
Q psy12852 793 VNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK- 868 (1102)
Q Consensus 793 ~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~- 868 (1102)
+.... ..+++|.+. ....+.++|+++|.+ ++.|+.||++ ++|| .++.||++++
T Consensus 352 ~~~~~~~~~~~~~G~~~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----v~g~-~v~~GY~~~~~ 408 (548)
T 2d1s_A 352 IITPEGDDKPGASGKVV-------PLFKAKVIDLDTKKS-----------LGPNRRGEVC----VKGP-MLMKGYVNNPE 408 (548)
T ss_dssp EECCTTCCCTTCCBEEC-------TTCEEEEECTTTCCB-----------CCTTCCEEEE----EEST-TSCSEETTCHH
T ss_pred eecCcccCCCCCCCccC-------CCceEEEEeCCcCcc-----------CCCCCCeEEE----ECCH-HHhhhhcCChH
Confidence 54322 223444432 344566677555543 4778888766 5588 5899999997
Q ss_pred HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCc
Q psy12852 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGR 948 (1102)
Q Consensus 869 ~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~ 948 (1102)
.|.+.|. .++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++
T Consensus 409 ~t~~~f~------~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~-~g~ 481 (548)
T 2d1s_A 409 ATKELID------EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPV-AGE 481 (548)
T ss_dssp HHHHHBC------TTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETT-TEE
T ss_pred Hhhhccc------CCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCC-CCe
Confidence 5666553 268999999999999999999999999999999999999999999999999999999977654 334
Q ss_pred eeEEEEE-cCCCccCHHHHHHHHHccCCCCCcce-EEEEecCccCCCCccchhhhhhhcCC
Q psy12852 949 AGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPL-FVRIMKAIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 949 ~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~-~i~~l~~lP~t~~GKidr~~L~~~~~ 1007 (1102)
...++++ ..+...+.++|+++|+++||.||+|. .|+++++||+|+||||||++|++...
T Consensus 482 ~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~ 542 (548)
T 2d1s_A 482 LPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILK 542 (548)
T ss_dssp EEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHH
T ss_pred eeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHh
Confidence 3344443 33345788999999999999999999 99999999999999999999998653
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.3e-69 Score=669.32 Aligned_cols=540 Identities=16% Similarity=0.178 Sum_probs=411.5
Q ss_pred hhhHHHHHHHHhhccCCCcccccccc--cccCHHHHHHHHHHhhc----c-ccccchh--hhHHHHHHHHhhcccCCccc
Q psy12852 430 DKSNHVIEKQAINFDQQDEEYVIDEA--ALLDEEEMTEFVRQLQS----K-IEQLEVD--VTYSRFKQEASNARSTNDAA 500 (1102)
Q Consensus 430 ~~~~~~l~~~~~~~~~~~p~~~l~~l--~~l~~~~~~~~~~~~~~----~-~~~~~~~--~~~~~~~~~~~~a~~~P~~~ 500 (1102)
.+|..+++..+. ||+...+++ .+......++++. ++. . ...++.. .+++.+++. +++++|+++
T Consensus 22 ~~y~~l~~~~~~-----~p~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~wf~~~~~n~~~~~l~~--~a~~~pd~~ 93 (652)
T 1pg4_A 22 EQYETKYKQSIN-----DPDTFWGEQGKILDWITPYQKVKN-TSFAPGNVSIKWYEDGTLNLAANCLDR--HLQENGDRT 93 (652)
T ss_dssp HHHHHHHHHHHH-----CHHHHHHHHGGGSCCSBCCSCCEE-EECCTTCCEEEESTTCEECHHHHHTGG--GHHHHTTSE
T ss_pred HHHHHHHHHHhc-----CHHHHHHHHHhhCceecCCccccc-CccccCCCCCEECCCCChhHHHHHHHH--HhccCCCce
Confidence 478889998888 888765544 2211111111111 111 0 0111111 234444433 578899999
Q ss_pred chhhc------c---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchhhhh
Q psy12852 501 ATTVK------N---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVH 571 (1102)
Q Consensus 501 Av~~~------~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~ 571 (1102)
|+++. . +|+||.++++++|+.|++.|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+
T Consensus 94 Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~ 173 (652)
T 1pg4_A 94 AIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAG 173 (652)
T ss_dssp EEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHH
Confidence 99862 1 29999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCceEEEEcCcch---------hHHHHHHhcCC--C-ceEEEecCCCC-------CCCChhHhhccCCCCCCCCCC
Q psy12852 572 SISTVKSKAIIVSALYY---------PEIEAIRESIP--D-VKLFLLDETKP-------DLPNLSDLMKTTPASEVKPSE 632 (1102)
Q Consensus 572 il~~~~~~~vi~~~~~~---------~~~~~~~~~~~--~-~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 632 (1102)
++++++++++|+++... +.+.......+ . .++++++.... ....+.++....... ....
T Consensus 174 ~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 251 (652)
T 1pg4_A 174 CIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPE--HQPE 251 (652)
T ss_dssp HHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSC--CCCC
T ss_pred HHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCC--CCcc
Confidence 99999999999987643 23344433322 2 34555543211 112244444332211 1223
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhh-hhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
...++|++||+|||||||+||||+++|+++...+ ......++++++|++++.+|++|+.+..+.++.+|+.|+++++.+
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 5578999999999999999999999999988765 345567899999999999999999996689999999999999987
Q ss_pred C----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHhCc--chhhh
Q psy12852 712 K----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRFHV--QTIIE 781 (1102)
Q Consensus 712 ~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~--~~l~n 781 (1102)
. +++..+++.|+++++|+++++|++++.|++.... ....++|.+++|||+++++++++|.+.++. ++++|
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 411 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc
Confidence 5 5899999999999999999999999999876531 234578888999999999999999998872 58999
Q ss_pred ccccccCCcccccCC-----CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecC
Q psy12852 782 FYGATEGNANLVNMD-----NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856 (1102)
Q Consensus 782 ~YG~TE~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G 856 (1102)
.||+||++..++... ...+++|.+. .++.+.++|++ |. +++.|++||++ +.|
T Consensus 412 ~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~-------~g~~v~i~d~~-g~-----------~v~~g~~GEl~----i~g 468 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGAIELKAGSATRPF-------FGVQPALVDNE-GH-----------PQEGATEGNLV----ITD 468 (652)
T ss_dssp EBCCGGGSSCSBCCCTTTCCBCTTCCBSBC-------TTCCEEEECTT-CC-----------BCCSSEEEEEE----ECS
T ss_pred cccCcccccceecCCCCCcCccCCccccCc-------CCCeEEEECCC-CC-----------CcCCCceEEEE----Ecc
Confidence 999999997665432 1233444432 34556666754 43 34666666654 668
Q ss_pred C-cccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcce
Q psy12852 857 P-SRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTE 934 (1102)
Q Consensus 857 ~-~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~ 934 (1102)
| ..++.||++++ .+.+.|+. ..++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+
T Consensus 469 ~~p~~~~gY~~~~e~~~~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~e 544 (652)
T 1pg4_A 469 SWPGQARTLFGDHERFEQTYFS----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAE 544 (652)
T ss_dssp CCTTCCCEETTCHHHHHHHHHS----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEE
T ss_pred CCCchhhhhcCCHHHHHhhhhh----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcce
Confidence 4 25899999997 44455543 236799999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCCCCceeEEEEEc-C-CCccC---HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 935 FTVYGVKVGDLDGRAGMIAIVD-T-SNQVD---LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 935 a~vv~~~~~~~~~~~~l~~~v~-~-~~~~~---~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|+|++++++. .++ .++++++ . +...+ .++|+++|+++||.||+|+.|+++++||+|+||||||++|++....
T Consensus 545 a~Vvg~~~~~-~g~-~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 545 AAVVGIPHAI-KGQ-AIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEEEEEETT-TEE-EEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEEEEEcCC-CCe-EEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 9999977654 333 4444443 2 22222 5789999999999999999999999999999999999999987644
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=2.7e-70 Score=658.48 Aligned_cols=485 Identities=18% Similarity=0.228 Sum_probs=309.3
Q ss_pred HHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEee
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vp 559 (1102)
+..+++. +|+++|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|
T Consensus 8 l~~~l~~--~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vp 85 (509)
T 3ivr_A 8 LADVYRR--NAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLP 85 (509)
T ss_dssp HHHHHHH--HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHH--HHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEe
Confidence 3344444 5999999999998765 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCC
Q psy12852 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSD 638 (1102)
Q Consensus 560 ld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1102)
++|.+|.+++.+++++++++++|++......+.......+.. .++.++... ..+......... .........++|
T Consensus 86 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~d 161 (509)
T 3ivr_A 86 VNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGS---GPFAPFKDLASD-TPFSAPEFGAAD 161 (509)
T ss_dssp CCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCSSCCEEEESSCCC---SSCEEGGGTCCC-SCCCCCCCCTTS
T ss_pred cCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccCCceEEEEcCCCC---cChhhHhhccCC-CCCCcCCCCccc
Confidence 999999999999999999999999998877755555555543 344444321 122222221111 112224677899
Q ss_pred eEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHH
Q psy12852 639 SLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNY 718 (1102)
Q Consensus 639 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l 718 (1102)
++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.+++.|++.++...+++..+
T Consensus 162 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~~~~~g~~~~~~~~~~~~~ 240 (509)
T 3ivr_A 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTG-LGLMLTLQQAGGASVIAAKFDPAQA 240 (509)
T ss_dssp EEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH-HHHHHHHHHHTCEEEECSSCCHHHH
T ss_pred cEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhH-HHHHHHHHHhCCcEEEecccCHHHH
Confidence 999999999999999999999999999999999999999999999999999998 6666666677777777778999999
Q ss_pred HHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC-
Q psy12852 719 FRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN- 797 (1102)
Q Consensus 719 ~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~- 797 (1102)
++.|+++++|++.++|+++..|+.........+++.++.+|++ +..+++.+.+++++++|.||+||++++++....
T Consensus 241 ~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~ 317 (509)
T 3ivr_A 241 ARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYR 317 (509)
T ss_dssp HHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGG
T ss_pred HHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccc
Confidence 9999999999999999999999987755556677887888887 889999999977799999999999987664322
Q ss_pred -CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHh
Q psy12852 798 -TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKIL 875 (1102)
Q Consensus 798 -~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~ 875 (1102)
....+|.+. ....+.++|++ |. ++|.|++||++ +.|| .++.||++++ .|.++|.
T Consensus 318 ~~~~~~G~p~-------~~~~~~i~d~~-~~-----------~~~~g~~GEl~----v~g~-~~~~gY~~~~~~t~~~f~ 373 (509)
T 3ivr_A 318 DRPKSAGRPL-------FWRTVAVVDAE-DR-----------PLPPGEVGEIV----LRGP-TVFKGYWNNAAATQHAFR 373 (509)
T ss_dssp GSTTSCCEEC-------TTCEEEEECTT-SC-----------BCCTTCCEEEE----EEST-TSCCEETTCHHHHHHHTG
T ss_pred cCCCcccccC-------CCcEEEEECCC-CC-----------CCCCCCceEEE----EecC-CccccccCCHHHhHHHhh
Confidence 222344432 34556667755 43 45888888876 4588 5889999987 5666663
Q ss_pred hcccCCCCeEEEecceeEEecCccEEEEccC--CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEE
Q psy12852 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRT--GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA 953 (1102)
Q Consensus 876 ~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~--dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~ 953 (1102)
++||+|||+|++++||+++|+||+ ||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++...++
T Consensus 374 -------~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a~ 445 (509)
T 3ivr_A 374 -------NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQ-WSEAIKAV 445 (509)
T ss_dssp -------GGSEEEEEEEEECTTSCEEEEEEC-------------------------------------------------
T ss_pred -------cCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccc-cCcEEEEE
Confidence 579999999999999999999999 99999999999999999999999999999999866554 23333333
Q ss_pred EE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCC
Q psy12852 954 IV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009 (1102)
Q Consensus 954 ~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~ 1009 (1102)
++ .++...+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++...+.
T Consensus 446 v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 446 CVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp ---------------------------------------------------------
T ss_pred EEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhc
Confidence 33 334457788999999999999999999999999999999999999999886553
No 17
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.3e-70 Score=661.68 Aligned_cols=496 Identities=19% Similarity=0.267 Sum_probs=309.7
Q ss_pred hhhHHHHHHHHhhcccCCcccchh---h--cc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHH
Q psy12852 480 DVTYSRFKQEASNARSTNDAAATT---V--KN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551 (1102)
Q Consensus 480 ~~~~~~~~~~~~~a~~~P~~~Av~---~--~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l 551 (1102)
.+..+.|.+ +++++|+++|++ + .+ +|+||+++++++|++|++.|+++||+|+|+++|++++++++|||+
T Consensus 20 ~tl~~~l~~---~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 20 GTAGEQLHK---AMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp SCHHHHHHH---HHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred CCHHHHHHH---HHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 344444544 588999999975 2 22 399999999999999999999999999999999999999999999
Q ss_pred HcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecCCC--CCCCChhHhhccCCCC--
Q psy12852 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDETK--PDLPNLSDLMKTTPAS-- 626 (1102)
Q Consensus 552 ~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~-- 626 (1102)
++|++++|++|.++.+++.+++++++++++|++....+.+.......+.. .++.++... .....+.++.......
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGF 176 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCTTCCEEEETTCSSCBTTBCBHHHHHHHHCCTTC
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCCCcceEEEEcCCccccCcccHHHHhhccccccc
Confidence 99999999999999999999999999999999999888877776666653 344443321 2334444444322111
Q ss_pred ---CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc---cCCCCCcEEEEecCchhhhhHHHHHHhH
Q psy12852 627 ---EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL---LSLGSGDVIYNCLPMYHSAGGLIGTIPA 700 (1102)
Q Consensus 627 ---~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~~~~~~~~~i~~~ 700 (1102)
...+.....+++++||+|||||||.||||+++|+++.+.+.+.... +++.++|++++.+|++|+.+ ++.++.+
T Consensus 177 ~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g-~~~~~~~ 255 (550)
T 3rix_A 177 NEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFG-MFTTLGY 255 (550)
T ss_dssp CTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHH-HHHHHHH
T ss_pred cccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHH-HHHHHHH
Confidence 1111123346789999999999999999999999999887766654 57889999999999999998 7788999
Q ss_pred hhcCceEEEeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcch
Q psy12852 701 LILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQT 778 (1102)
Q Consensus 701 l~~G~~lv~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~ 778 (1102)
++.|+++++.+++++..+++.|+++++|+++++|+++..|+...... ...+++.+++|||++++++.++|.+.++...
T Consensus 256 l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 335 (550)
T 3rix_A 256 LICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPG 335 (550)
T ss_dssp HHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSC
T ss_pred HHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999998875432 3457888899999999999999999998756
Q ss_pred hhhccccccCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeec
Q psy12852 779 IIEFYGATEGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855 (1102)
Q Consensus 779 l~n~YG~TE~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~ 855 (1102)
++|.||+||+++.++.... ..+++|.+. ....+.++|+++|.+ ++.|++||++ ++
T Consensus 336 v~~~YG~TE~~~~~~~~~~~~~~~~~vG~~~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----v~ 393 (550)
T 3rix_A 336 IRQGYGLTETTSAILITPEGDDKPGAVGKVV-------PFFEAKVVDLDTGKT-----------LGVNQRGELC----VR 393 (550)
T ss_dssp CEEEEECGGGSSEEEECCTTCCCTTEEEEEC-------TTCEEEEECTTTCCB-----------CCTTCCEEEE----EE
T ss_pred cccccCcCccccceecCCCCCCCCCCccccc-------CCcEEEEEeCCCCcC-----------CCCCCCeEEE----Ee
Confidence 9999999999987765433 234445443 345666777665644 4788888866 55
Q ss_pred CCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCccee
Q psy12852 856 DPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEF 935 (1102)
Q Consensus 856 G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a 935 (1102)
|| .++.||++++..+..++. .++||+|||+|++++||+++|+||+|||||++|+||+|.|||++|.+||+|.+|
T Consensus 394 g~-~v~~GY~~~~~~t~~~~~-----~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a 467 (550)
T 3rix_A 394 GP-MIMSGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDA 467 (550)
T ss_dssp ST-TSCSEETTCHHHHHHHBC-----TTSCEEEEEEEEECTTCCEEEC--------------------------------
T ss_pred CC-CcchhhcCChhhhhhhcC-----CCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceE
Confidence 88 589999999844444332 378999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCc-ceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 936 TVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYAR-PLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~-P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+|++++++. .++...++++ ..+...+.++++++++++|+.|+. |..|+++++||+|+||||||++|+++..+
T Consensus 468 ~vv~~~~~~-~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 541 (550)
T 3rix_A 468 GVAGLPDDD-AGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIK 541 (550)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEeecCC-CCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHh
Confidence 999866554 3333333333 334457788999999999999855 55799999999999999999999987654
No 18
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.9e-70 Score=657.44 Aligned_cols=485 Identities=18% Similarity=0.221 Sum_probs=353.3
Q ss_pred HHHHHHHHhhcccCCcccchhh----cc---hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCc
Q psy12852 483 YSRFKQEASNARSTNDAAATTV----KN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~----~~---~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~ 555 (1102)
+..+++. +|+++|+++|+++ .+ +|+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+++|+
T Consensus 20 l~~~l~~--~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga 97 (541)
T 1v25_A 20 LWDFLER--AAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGA 97 (541)
T ss_dssp THHHHHH--HHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH--HHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCc
Confidence 3344444 5889999999983 22 2999999999999999999999999999999999999999999999999
Q ss_pred eEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCce-EEEecCCCC-CCCChhHhhccCCCCCCCCCCC
Q psy12852 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLDETKP-DLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 556 ~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
+++|++|.++.+++.+++++++++++|++....+.+..+...++... ++.++...+ ....+.+........ ..
T Consensus 98 v~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 172 (541)
T 1v25_A 98 VLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP-----VR 172 (541)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCSSCCEEEESSSCCCTTCEEHHHHCCSCCCC-----CC
T ss_pred EEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCCCccEEEEecCCCCcccccHHHHhhccCCc-----cc
Confidence 99999999999999999999999999999988777777666555543 444443221 222344443322111 34
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhh--hhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV--GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~--~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
..+++++||+|||||||.||||++||+++.+.... ....++++++|++++.+|++|..+ +..++.+++.|+++++.+
T Consensus 173 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~-~~~~~~~l~~G~~~v~~~ 251 (541)
T 1v25_A 173 VPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA-WCLPYAATLVGAKQVLPG 251 (541)
T ss_dssp CCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHH-HTHHHHHHHHTCEEEECT
T ss_pred CCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhH-HHHHHHHHhcCceEEeeC
Confidence 56789999999999999999999999999877655 345678899999999999999988 567888999999999987
Q ss_pred C-CCHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccC
Q psy12852 712 K-FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEG 788 (1102)
Q Consensus 712 ~-~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 788 (1102)
. +++..+++.|+++++|+++++|+++..|++.... ....+++.+++|||++++++.++| +.++. +++|.||+||+
T Consensus 252 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~-~~~~~YG~TE~ 329 (541)
T 1v25_A 252 PRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMGV-EVRQGYGLTET 329 (541)
T ss_dssp TCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTTC-EEEEEEECGGG
T ss_pred CCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhCC-ceeeccccccc
Confidence 5 7999999999999999999999999999775432 234578888999999999999999 66654 89999999999
Q ss_pred CcccccCCCC--------------CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC--CCCcceEEEE
Q psy12852 789 NANLVNMDNT--------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY--NQPGMIIGEI 852 (1102)
Q Consensus 789 ~~~~~~~~~~--------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~--g~~Gel~gei 852 (1102)
+.+++..... ..++|.+. ..+.+.++|++ |.++ +. ++.|| |
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~-g~~~-----------~~~~~~~GE----l 386 (541)
T 1v25_A 330 SPVVVQNFVKSHLESLSEEEKLTLKAKTGLPI-------PLVRLRVADEE-GRPV-----------PKDGKALGE----V 386 (541)
T ss_dssp SSEEEECCCCGGGTTSCHHHHHHHHTSCBEEC-------TTCEEEEECTT-SCBC-----------CSSSCCCEE----E
T ss_pred ccceecccccccccccCccccccccCCCCCcC-------CCcEEEEECCC-CCCC-----------CCCCCcceE----E
Confidence 9776544221 12233332 34556667755 4433 32 24555 5
Q ss_pred eecCCcccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCC
Q psy12852 853 KQSDPSRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931 (1102)
Q Consensus 853 ~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~ 931 (1102)
+++|| .++.||++++ .|.++|.. ++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+
T Consensus 387 ~v~g~-~v~~GY~~~p~~t~~~f~~------~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~ 459 (541)
T 1v25_A 387 QLKGP-WITGGYYGNEEATRSALTP------DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPK 459 (541)
T ss_dssp EEEST-TSBSSCBTCHHHHHTTBCT------TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC------
T ss_pred EEeCc-chhccccCChhhhhhhccC------CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCC
Confidence 56799 5899999997 45555532 6799999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHc-cCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 932 YTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 932 V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~-~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
|.+|+|++++++. .++..+++++..+...+.+++++++++ +||.||+|+.|+++++||+|+||||||++|++.+.+
T Consensus 460 V~~a~Vv~~~~~~-~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 460 VKEAAVVAIPHPK-WQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ----CEEEEECSS-SSEEEEECC-------------------CCCTTTSCSBC--------------CCTTHHHHSTT
T ss_pred ceEEEEEEecCCC-cCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHH
Confidence 9999999977654 234444333333445677899999999 999999999999999999999999999999987644
No 19
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.5e-70 Score=707.06 Aligned_cols=548 Identities=20% Similarity=0.227 Sum_probs=326.5
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhccccccchhhhHHHHHHHH
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEA 490 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (1102)
.-+|+..+++..+ +++++.++..+++.+.. .++.+..+..+.+. .+...+|...+++.++..
T Consensus 8 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~p~~~tl~~~l~~- 69 (979)
T 3tsy_A 8 HHHSSGLVPRGSH-MARMAPQEQAVSQVMEK-----QSNNNNSDVIFRSK-----------LPDIYIPNHLSLHDYIFQ- 69 (979)
T ss_dssp -------------------------------------------CCCBCCS-----------SCCCCCCTTSCHHHHHTT-
T ss_pred cccccCcccCcch-hhhhhhHHHHHHHhhhh-----cccCCCCCceeecC-----------CCCCCCCCCCCHHHHHHH-
Confidence 4468888999999 99999999888887766 33333322222111 122344544556666655
Q ss_pred hhcccCCcccchhhcc-----hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCC
Q psy12852 491 SNARSTNDAAATTVKN-----LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565 (1102)
Q Consensus 491 ~~a~~~P~~~Av~~~~-----~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p 565 (1102)
+++++|+++|+++.. +|+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++|++|.+|
T Consensus 70 -~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~ 148 (979)
T 3tsy_A 70 -NISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFT 148 (979)
T ss_dssp -TGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSC
T ss_pred -HHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 799999999998752 39999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCC-----CCCCChhHhhccCCCC-CCCCCCCCCCCCe
Q psy12852 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK-----PDLPNLSDLMKTTPAS-EVKPSEPLQTSDS 639 (1102)
Q Consensus 566 ~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 639 (1102)
.+++.+++++++++++|++....+.+..+.... ...++.++... .....+.++....... .........++|+
T Consensus 149 ~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (979)
T 3tsy_A 149 PAEIAKQAKASNTKLIITEARYVDKIKPLQNDD-GVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDDV 227 (979)
T ss_dssp HHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS-CCEEEECCCCTTSCCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSE
T ss_pred HHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC-CceEEEeCCcccccCCcccccHHHHhhccccccccCCcCCCCccce
Confidence 999999999999999999998877666654432 34555555421 1122233332221110 1112245678999
Q ss_pred EEEEECCCCCCCCceEEeccHHHHHhhhhhhh----ccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 640 LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH----LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 640 a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~----~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
+||+|||||||+||||+++|+++.+.+..... .+++.++|++++.+|++|+.++...++.+|..|+++++.+++++
T Consensus 228 a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~ 307 (979)
T 3tsy_A 228 VALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEI 307 (979)
T ss_dssp EECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCH
T ss_pred EEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCH
Confidence 99999999999999999999999987765443 56788999999999999999977888999999999999999999
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCCc--cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESE--ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~--~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 793 (1102)
..+++.|+++++|++.++|+++..|+...... ...+++.+++|||++++++.++|.+.+|+++++|.||+||++++++
T Consensus 308 ~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 387 (979)
T 3tsy_A 308 NLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLA 387 (979)
T ss_dssp HHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCSEEE
T ss_pred HHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhHHHH
Confidence 99999999999999999999999998875433 3457888899999999999999999998779999999999997654
Q ss_pred cCC--------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccC
Q psy12852 794 NMD--------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865 (1102)
Q Consensus 794 ~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~ 865 (1102)
... ...+++|.+. .+..+.++|+++|.+ ++.|++|||+ +.|| .++.||+
T Consensus 388 ~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~~~~~-----------~~~g~~GEl~----i~g~-~v~~GY~ 444 (979)
T 3tsy_A 388 MSLGFAKEPFPVKSGACGTVV-------RNAEMKIVDPDTGDS-----------LSRNQPGEIC----IRGH-QIMKGYL 444 (979)
T ss_dssp ECGGGSSSCCCCCTTCCCEEC-------SSCEEEEECTTSCCB-----------CCTTCCEEEE----EEST-TSCSEET
T ss_pred hCCCCCCCccccCCCCcCccc-------CCcEEEEEeCCCCCC-----------CCCCCccEEE----EECC-Ccccccc
Confidence 321 1223344432 456677788776644 4788888866 5588 5899999
Q ss_pred Cch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCC
Q psy12852 866 DKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944 (1102)
Q Consensus 866 ~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~ 944 (1102)
|+| .|.++|. +++||||||+|++++||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++++++.
T Consensus 445 ~~p~~t~~~f~------~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~ 518 (979)
T 3tsy_A 445 NNPAATAETID------KDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEA 518 (979)
T ss_dssp TCHHHHHHHBC------TTSCEEEEEEEEECTTSCEEEEEESCC------------------------------------
T ss_pred CChhhhhhhcc------CCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccC
Confidence 997 5655553 378999999999999999999999999999999999999999999999999999999866543
Q ss_pred CCCceeEEEEE-cCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 945 LDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 945 ~~~~~~l~~~v-~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
.++..+++++ ..+...+.++|+++|+++||.||+|..|+++++||+|+||||||++|++...+
T Consensus 519 -~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 519 -AGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp -----------------------------------------------------------------
T ss_pred -CCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 3333333333 23345678899999999999999999999999999999999999999987654
No 20
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.7e-69 Score=646.90 Aligned_cols=474 Identities=18% Similarity=0.237 Sum_probs=383.7
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+++|+++|+++.+. |+||+++++++|++|.+.|+++|++|+++++|++++++++|||+++|++++|++|.+|.++
T Consensus 10 ~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl~~~~~~~~ 89 (512)
T 3fce_A 10 WAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPVDLSIPADR 89 (512)
T ss_dssp HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEEETTSCHHH
T ss_pred HHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEeeCCCCcHHH
Confidence 5899999999998765 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCC
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGT 648 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGS 648 (1102)
+.+++++++++++|++...... .. ...++..+ .+.............+.....+++++||+|||||
T Consensus 90 l~~il~~~~~~~~i~~~~~~~~------~~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGT 155 (512)
T 3fce_A 90 VQRIAENSGAKLLLSATAVTVT------DL-PVRIVSED-------NLKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGS 155 (512)
T ss_dssp HHHHHHHSCCCEEEESSCCCSS------CC-SSEEEETH-------HHHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC-
T ss_pred HHHHHHhcCCCEEEecCccccc------cc-ccceechh-------hhhhhcccccccCCCccccCCCCCeEEEEECCCC
Confidence 9999999999999998543210 01 12222111 1222222222222222245678999999999999
Q ss_pred CCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHhhc
Q psy12852 649 TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKY 725 (1102)
Q Consensus 649 TG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~~~ 725 (1102)
||.||||+++|+++.+.+.+....++++++|++++++|++|+.+ +..++.+++.|+++++.++ +++..+++.++++
T Consensus 156 TG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~ 234 (512)
T 3fce_A 156 TGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLS-VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQS 234 (512)
T ss_dssp ---CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGG-HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHH
T ss_pred CCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHH-HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999998 7889999999999999986 7899999999999
Q ss_pred ccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC------
Q psy12852 726 KCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN------ 797 (1102)
Q Consensus 726 ~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~------ 797 (1102)
++|++.++|+++..++..... ....+++.+++|||++++++.++|.+.+++++++|.||+||+++.++....
T Consensus 235 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 235 DIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp CCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred CCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 999999999999998876543 234577888999999999999999999987799999999999987764322
Q ss_pred --CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHH
Q psy12852 798 --TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKI 874 (1102)
Q Consensus 798 --~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f 874 (1102)
....+|.+. ....+.++|++ |. +++.|++||++ +.|| .++.||++++ .|.+.|
T Consensus 315 ~~~~~~~G~~~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~~f 370 (512)
T 3fce_A 315 QYKSLPVGYCK-------SDCRLLIMKED-GT-----------IAPDGEKGEIV----IVGP-SVSVGYLGSPELTEKAF 370 (512)
T ss_dssp HCSSCCCEEEC-------TTCEEEEECSS-SC-----------BCCTTSCEEEE----EEST-TSCSCBTTCHHHHHHHE
T ss_pred ccCCCcccccc-------CCcEEEEECCC-CC-----------CCCCCCeEEEE----Eecc-ccChhhcCCchhhhhcc
Confidence 222334332 34556666644 43 45788888866 5588 5889999997 566666
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
.. .++++||+|||+|++ +||+|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. ....++++
T Consensus 371 ~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~--~~~~~~a~ 444 (512)
T 3fce_A 371 TM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGE--KYDYLLAV 444 (512)
T ss_dssp EE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETT--EEEEEEEE
T ss_pred cc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCC--CceEEEEE
Confidence 42 246899999999999 7999999999999999999999999999999999999999999876553 33344444
Q ss_pred EcC-CCc-cC----HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCC
Q psy12852 955 VDT-SNQ-VD----LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPS 1010 (1102)
Q Consensus 955 v~~-~~~-~~----~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~ 1010 (1102)
+.. +.. .+ .++|+++|+++||.||+|..|+++++||+|+||||||++|++...+..
T Consensus 445 vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~ 506 (512)
T 3fce_A 445 VVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALE 506 (512)
T ss_dssp EEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred EecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcc
Confidence 432 222 12 357999999999999999999999999999999999999998765533
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.5e-68 Score=646.58 Aligned_cols=480 Identities=20% Similarity=0.219 Sum_probs=389.5
Q ss_pred CCcccchhhc------c--hHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCc
Q psy12852 496 TNDAAATTVK------N--LEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566 (1102)
Q Consensus 496 ~P~~~Av~~~------~--~Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~ 566 (1102)
+|+++|+++. . +|+||+++++++|++|++. |+++|++|+|+++|++++++++|||+++|++++|++|.++.
T Consensus 56 ~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~ 135 (570)
T 3c5e_A 56 RPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKS 135 (570)
T ss_dssp SCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCTTCCH
T ss_pred CCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHHHHHHHcCeEEEecCCCCCH
Confidence 9999999862 1 2999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCc-eEEEecC-CCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEE
Q psy12852 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLDE-TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIY 644 (1102)
Q Consensus 567 ~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~ 644 (1102)
+++.+++++++++++|++....+.+..+....+.. .++.++. ...+...+.++......... .....++|++||+|
T Consensus 136 ~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~a~i~~ 213 (570)
T 3c5e_A 136 TDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHH--CVETGSQEASAIYF 213 (570)
T ss_dssp HHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCTTCCEEEEESSSCCTTSEEHHHHHHHSCSCCC--CCCCBTTSEEEEEE
T ss_pred HHHHHHHHhcCCeEEEechHHHHHHHHHhhcCCceeEEEEecccCccccccHHHHhhccccccc--ccCCCCCCcEEEEE
Confidence 99999999999999999998887777666555554 3444443 11233345555443322211 13467899999999
Q ss_pred CCCCCCCCceEEeccHHHHH-hhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC--CCCHhHHHHH
Q psy12852 645 TSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT--KFSASNYFRD 721 (1102)
Q Consensus 645 TSGSTG~PKgV~~th~~l~~-~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~--~~~~~~l~~~ 721 (1102)
||||||.||||+++|+.+.+ ..... ..++++++|++++.+|++|+.++...++.++..|+++++.+ .+++..+++.
T Consensus 214 TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~ 292 (570)
T 3c5e_A 214 TSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT 292 (570)
T ss_dssp CCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHH
T ss_pred CCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHH
Confidence 99999999999999994442 44444 67889999999999999999996668999999999999987 5899999999
Q ss_pred HhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC---
Q psy12852 722 CAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN--- 797 (1102)
Q Consensus 722 i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~--- 797 (1102)
|+++++|+++++|++++.|++.... ....+++.+++|||++++++.++|.+.++. +++|.||+||+++.++....
T Consensus 293 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE~~~~~~~~~~~~~ 371 (570)
T 3c5e_A 293 LSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTETGLTCMVSKTMKI 371 (570)
T ss_dssp HHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC-CCEEEEEETTTEEEEECCTTSCC
T ss_pred HHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcCCHHHHHHHHHHhCC-chhhccchhhcccceecCccccc
Confidence 9999999999999999999876422 234578888999999999999999998865 89999999999977654432
Q ss_pred CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEe-ecCCcccccccCCch-HHHHHHh
Q psy12852 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK-QSDPSRHFYGYADKK-ESQKKIL 875 (1102)
Q Consensus 798 ~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~-~~G~~~~~~gY~~~~-~t~~~f~ 875 (1102)
..+++|.+. ....+.++|++ |. ++|.|++||++++.. +.|| .++.||++++ .|.++|.
T Consensus 372 ~~~~vG~p~-------~~~~v~i~d~~-g~-----------~~~~G~~GEl~v~~~~~~g~-~v~~GY~~~~~~t~~~f~ 431 (570)
T 3c5e_A 372 KPGYMGTAA-------SCYDVQIIDDK-GN-----------VLPPGTEGDIGIRVKPIRPI-GIFSGYVDNPDKTAANIR 431 (570)
T ss_dssp CTTCCCEEC-------TTCCEEEECTT-SC-----------BCCTTCCEEEEEECSSBCCT-TCCCEETTCHHHHHHTEE
T ss_pred CCCcccccC-------CCceEEEECCC-CC-----------CCCCCCCCeeEEeccCCCCc-hhhccccCChhHhhhhhc
Confidence 234444442 33455666654 43 458899998774311 1277 5889999997 5555552
Q ss_pred hcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE
Q psy12852 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV 955 (1102)
Q Consensus 876 ~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v 955 (1102)
++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.+||+|.+++|++.+++. ....+++++
T Consensus 432 -------~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~--~g~~~~a~v 502 (570)
T 3c5e_A 432 -------GDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPV--RGEVVKAFV 502 (570)
T ss_dssp -------TTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETT--TEEEEEEEE
T ss_pred -------CCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCC--CCeEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999976653 333444444
Q ss_pred cCCCc-------cCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 956 DTSNQ-------VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 956 ~~~~~-------~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+.... ...++|+++|+++||.||+|+.|+++++||+|+||||||++|++....
T Consensus 503 v~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 562 (570)
T 3c5e_A 503 VLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK 562 (570)
T ss_dssp EECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred EECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHHHHh
Confidence 32211 236789999999999999999999999999999999999999987543
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.1e-67 Score=638.93 Aligned_cols=484 Identities=18% Similarity=0.211 Sum_probs=379.5
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
++..+++. +++ +|+++|+++.+. |+||+++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 25 ~~~~~l~~--~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 101 (529)
T 2v7b_A 25 FAAYLFRL--NET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPV 101 (529)
T ss_dssp HHHHHHHH--TGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHh--hhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEE
Confidence 35555555 577 999999997654 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC--ceEEEecCCCC---CCCChhHhhccCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDETKP---DLPNLSDLMKTTPASEVKPSEP 633 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 633 (1102)
|+++.++.+++.+++++++++++|++......+.......+. ..++..+.... ....++++....... .....
T Consensus 102 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 179 (529)
T 2v7b_A 102 VANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPA--AKAAA 179 (529)
T ss_dssp ECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCC--SSCCC
T ss_pred ecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCc--ccccC
Confidence 999999999999999999999999998877666655443332 23333333210 122455544322211 11235
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHH-HHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEe-C
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKV-LLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIR-T 711 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l-~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~-~ 711 (1102)
..++|++||+|||||||.||||+++|+++ .+........++++++|++++.+|++|+.++...++.++..|+++++. +
T Consensus 180 ~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~ 259 (529)
T 2v7b_A 180 TGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259 (529)
T ss_dssp CCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCS
T ss_pred CCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecC
Confidence 67899999999999999999999999999 677777777789999999999999999999666778899999999988 5
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCCcc--ccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCC
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA--DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~--~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~ 789 (1102)
.+++..+++.|+++++|++.++|+++..++....... ..+++.+++|||++++++.++|.+.++. +++|.||+||++
T Consensus 260 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~-~i~~~YG~TE~~ 338 (529)
T 2v7b_A 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEML 338 (529)
T ss_dssp CCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC-CEEEEEECTTTS
T ss_pred CCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC-ceeeeEchhhcC
Confidence 6899999999999999999999999999987654322 3467888899999999999999999865 899999999996
Q ss_pred cccccCC---CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCC
Q psy12852 790 ANLVNMD---NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866 (1102)
Q Consensus 790 ~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~ 866 (1102)
.+++... ...+++|.+. ....+.++|++ |. ++|.|++||++ ++|| .++.||++
T Consensus 339 ~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~~~~gY~~ 394 (529)
T 2v7b_A 339 HIFLSNRAGAVEYGTTGRPV-------PGYEIELRDEA-GH-----------AVPDGEVGDLY----IKGP-SAAVMYWN 394 (529)
T ss_dssp SEEEECCTTCCCTTSCCEEC-------TTCEEEEECTT-SC-----------BCCTTSCEEEE----EECT-TCCCCBTT
T ss_pred ceeeccccCCCccCCcccCC-------CCCEEEEECCC-CC-----------CCCCCCccEEE----EecC-CcccccCC
Confidence 5544322 1223444432 34556666644 43 45788888866 5588 48899999
Q ss_pred ch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCC
Q psy12852 867 KK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945 (1102)
Q Consensus 867 ~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~ 945 (1102)
++ .|.+.|. ++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|.+||+|.+++|+++ ++.
T Consensus 395 ~~~~t~~~f~-------~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~- 465 (529)
T 2v7b_A 395 NREKSRATFL-------GEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHG- 465 (529)
T ss_dssp CHHHHHHHEE-------TTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EET-
T ss_pred ChHHHHHhhh-------cCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCC-
Confidence 87 5666653 5799999999999999999999999999999999999999999999999999999986 222
Q ss_pred CCceeEEEEEcCCCc--c--CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 946 DGRAGMIAIVDTSNQ--V--DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 946 ~~~~~l~~~v~~~~~--~--~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
.++...++++..... . ..++|+++|+++||.||+|..|+++++||+|+||||||++|++
T Consensus 466 ~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 466 GLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp TEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred CceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 233333334322221 1 3468999999999999999999999999999999999999985
No 23
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.2e-68 Score=654.91 Aligned_cols=488 Identities=19% Similarity=0.249 Sum_probs=387.9
Q ss_pred hcccCCcccchhhc------c---hHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecC
Q psy12852 492 NARSTNDAAATTVK------N---LEAQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~------~---~Y~eL~~~a~~lA~~L~-~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld 561 (1102)
+++++|+++|+++. . +|+||.++++++|+.|+ +.|+++||+|+|+++|++++++++|||+++|++++|++
T Consensus 91 ~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVF 170 (663)
T ss_dssp HHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeC
Confidence 48889999999862 1 29999999999999999 99999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhhccCceEEEEcCcch---------hHHHHHHhcCCCc-eEEEecCCCC--------CCCChhHhhccC
Q psy12852 562 TNLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDV-KLFLLDETKP--------DLPNLSDLMKTT 623 (1102)
Q Consensus 562 ~~~p~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~~~~~~ 623 (1102)
+.++.+++.+++++++++++|+++... +.+.......+.+ ++++++.... ....+.++....
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKY 250 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhc
Confidence 999999999999999999999987653 2344444444443 3555543211 112244444322
Q ss_pred CCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhh-hhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhh
Q psy12852 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ-VGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702 (1102)
Q Consensus 624 ~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~ 702 (1102)
.. ........++|++||+|||||||+||||+++|+++..... .....++++++|++++.+|++|+.+..+.++.+|+
T Consensus 251 ~~--~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~ 328 (663)
T 1ry2_A 251 KT--YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLL 328 (663)
T ss_dssp CS--CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHH
T ss_pred CC--CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHH
Confidence 21 1122456789999999999999999999999999876653 45567899999999999999999996689999999
Q ss_pred cCceEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC----ccccccceeeeeccCCCHHHHHHHHHHh
Q psy12852 703 LGSSIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES----EADYSHQVVKMIGVGMRGDIWAKFVKRF 774 (1102)
Q Consensus 703 ~G~~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~ 774 (1102)
.|+++++.+. +++..+++.|+++++|+++++|++++.|.+.... ....++|.+++|||++++++++++.+.+
T Consensus 329 ~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~ 408 (663)
T 1ry2_A 329 YGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKI 408 (663)
T ss_dssp HTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTT
T ss_pred hCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHh
Confidence 9999999875 5899999999999999999999999999876532 2345788889999999999999999988
Q ss_pred C--cchhhhccccccCCcccccCC------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccC-CCC
Q psy12852 775 H--VQTIIEFYGATEGNANLVNMD------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY-NQP 845 (1102)
Q Consensus 775 ~--~~~l~n~YG~TE~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~-g~~ 845 (1102)
+ .++++|.||+||++..++... ...+++|.+. ..+.+.++|+++|.++ +. |+.
T Consensus 409 g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~-------~g~~v~i~d~~~g~~v-----------~~~g~~ 470 (663)
T 1ry2_A 409 GKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPF-------FGIDAVVLDPNTGEEL-----------NTSHAE 470 (663)
T ss_dssp SCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEEC-------TTCCEEEECSSSTTCE-----------ECSSCE
T ss_pred CCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCc-------CCCeEEEEcCCCCCcC-----------CCCCcc
Confidence 6 258999999999987654332 1233444432 3455667777456544 44 666
Q ss_pred cceEEEEeecCC-cccccccCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHH
Q psy12852 846 GMIIGEIKQSDP-SRHFYGYADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923 (1102)
Q Consensus 846 Gel~gei~~~G~-~~~~~gY~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE 923 (1102)
||++ +.|| ..++.||++++ .+.+.|+. ..++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||
T Consensus 471 Gel~----i~g~~p~~~~gy~~~~~~~~~~~~~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE 542 (663)
T 1ry2_A 471 GVLA----VKAAWPSFARTIWKNHDRYLDTYLN----PYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIE 542 (663)
T ss_dssp EEEE----ESSCCTTSCCEETTCHHHHHHHHTS----SSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHH
T ss_pred eEEE----EecCCCchhcccccChHHHHHhhhc----CCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHH
Confidence 6654 6675 25899999997 45555543 2367999999999999999999999999999999999999999
Q ss_pred HHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCC-c---c-------CHHHHHHHHHccCCCCCcceEEEEecCccCC
Q psy12852 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN-Q---V-------DLKLLVQGLDANLPAYARPLFVRIMKAIEMT 992 (1102)
Q Consensus 924 ~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~-~---~-------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t 992 (1102)
++|.+||+|.+|+|++++++. .++..+++++..+. . . ..++|+++|+++||+||+|+.|+++++||+|
T Consensus 543 ~~l~~~p~V~ea~Vvg~~~~~-~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T 621 (663)
T 1ry2_A 543 AAIIEDPIVAECAVVGFNDDL-TGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKT 621 (663)
T ss_dssp HHHHSSTTEEEEEEECCCCCT-TSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBC
T ss_pred HHHHhCCCcceEEEEEEecCC-CCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCC
Confidence 999999999999999865443 34444444442221 1 1 1578999999999999999999999999999
Q ss_pred CCccchhhhhhhcCCC
Q psy12852 993 GTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 993 ~~GKidr~~L~~~~~~ 1008 (1102)
+||||+|++|+++...
T Consensus 622 ~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 622 RSGKIMRRILRKILAG 637 (663)
T ss_dssp TTSCBCHHHHHHSCC-
T ss_pred CccCchHHHHHHHHcC
Confidence 9999999999998654
No 24
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=7.9e-68 Score=637.00 Aligned_cols=470 Identities=18% Similarity=0.213 Sum_probs=386.7
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCch
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~-gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~ 567 (1102)
+|+++|+++|+++.+. |+||+++++++|++|++. |.++|++|+++++|++++++++|||+++|++++|+++.+|.+
T Consensus 10 ~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~ 89 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDLSIPSE 89 (511)
T ss_dssp HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEETTSCHH
T ss_pred HHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEecCCCChHH
Confidence 5999999999998765 999999999999999986 888999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCceEEEEcCcchhHHHHHHhcCC-CceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCCeEEEEECC
Q psy12852 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTS 646 (1102)
Q Consensus 568 ~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TS 646 (1102)
++.+++++++++++|++...... ... ....+ ...++....... ........+++++||+|||
T Consensus 90 ~l~~~l~~~~~~~li~~~~~~~~------~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TS 152 (511)
T 3e7w_A 90 RIAKIIESSGAELLIHAAGLSID------AVGQQIQTV----------SAEELLENEGGS-VSQDQWVKEHETFYIIYTS 152 (511)
T ss_dssp HHHHHHHHHTCCEEEESSSCCTT------CCCCSSCEE----------EHHHHHTSCSCC-CCGGGSCCTTSEEEEEEEC
T ss_pred HHHHHHHhCCCCEEEecccccch------hccccccee----------cHhhhhccccCC-ccccccCCCCCeEEEEECC
Confidence 99999999999999997543210 000 11111 222333222211 1122346788999999999
Q ss_pred CCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---CCHhHHHHHHh
Q psy12852 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCA 723 (1102)
Q Consensus 647 GSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~~~~~l~~~i~ 723 (1102)
||||.||||+++|+++.+.+.+....++++++|++++++|++|+.+ +..++.++..|+++++.+. +++..+++.++
T Consensus 153 GTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~ 231 (511)
T 3e7w_A 153 GSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLS-VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELK 231 (511)
T ss_dssp CTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHH-HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHH
T ss_pred CCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHH-HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 7889999999999999876 68999999999
Q ss_pred hcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCCC----
Q psy12852 724 KYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN---- 797 (1102)
Q Consensus 724 ~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~---- 797 (1102)
++++|++.++|++++.++..+.. ....+++.+++|||++++++.+++.+.+++++++|.||+||+++.++....
T Consensus 232 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 311 (511)
T 3e7w_A 232 KSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDV 311 (511)
T ss_dssp HHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHH
T ss_pred HcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccc
Confidence 99999999999999999886543 234567888999999999999999999987799999999999987664321
Q ss_pred ----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHH
Q psy12852 798 ----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQK 872 (1102)
Q Consensus 798 ----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~ 872 (1102)
....+|.+. ..+.+.++|++ |. ++|.|++||++ +.|| .++.||++++ .|.+
T Consensus 312 ~~~~~~~~~G~~~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~v~~GY~~~~~~t~~ 367 (511)
T 3e7w_A 312 ISRSESLPVGFAK-------PDMNIFIMDEE-GQ-----------PLPEGEKGEIV----IAGP-SVSRGYLGEPELTEK 367 (511)
T ss_dssp HTTCSSCCCBEEC-------TTCEEEEECTT-SC-----------BCCTTCCEEEE----EEST-TSCCCBTTCHHHHHH
T ss_pred cccCCcCCCccee-------CCCEEEEECCC-CC-----------CCCCCCceEEE----EecC-ccChhhCCCcccchh
Confidence 222344432 34566667755 43 45888888876 4588 5889999987 6777
Q ss_pred HHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEE
Q psy12852 873 KILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI 952 (1102)
Q Consensus 873 ~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~ 952 (1102)
.|+.. +|++||+|||+|++ +||.|+|+||+||+||++|+||+|.|||++|.+||+|.+|+|++++++. .++..++
T Consensus 368 ~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~-~~~~~~a 442 (511)
T 3e7w_A 368 AFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNG-TVEYLIA 442 (511)
T ss_dssp HEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSS-SCCEEEE
T ss_pred hhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCC-CceEEEE
Confidence 77543 45678999999999 5899999999999999999999999999999999999999999866443 3444444
Q ss_pred EEEcCCCc-cC----HHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 953 AIVDTSNQ-VD----LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 953 ~~v~~~~~-~~----~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++..+.. .+ .++|+++|+++||.||+|..|+++++||+|+||||||++|++...+
T Consensus 443 ~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~ 503 (511)
T 3e7w_A 443 AIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLV 503 (511)
T ss_dssp EEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred EEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhh
Confidence 45433322 22 4689999999999999999999999999999999999999987543
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.9e-68 Score=644.67 Aligned_cols=482 Identities=16% Similarity=0.155 Sum_probs=381.2
Q ss_pred hHHHHHHHHhhcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEe
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~v 558 (1102)
..+.|.+ +|+++|+++|+.+.+. |+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|++++
T Consensus 6 l~~~l~~---~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 6 MIDSIEQ---FAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp HHHHHHH---HHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHH---HHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 3444444 4899999999988764 999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCCCCCCCCC
Q psy12852 559 LINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSD 638 (1102)
Q Consensus 559 pld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (1102)
|+++.++.+++.+++++++++++|++.+....+ ....++.++. +........ .........++|
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~-------~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~d 146 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI-------EGISLVSLSE-------IESAKLAEM--PYERTHSVKGDD 146 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC-------TTSEEEEHHH-------HHHHHHHTC--CCCCSSCCCTTS
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc-------ccCcccchhh-------hhhcccccC--CcccCCCCCCCC
Confidence 999999999999999999999999987653221 1222322211 111111111 111224567899
Q ss_pred eEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc--cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCC---C
Q psy12852 639 SLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL--LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTK---F 713 (1102)
Q Consensus 639 ~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~--~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~---~ 713 (1102)
++||+|||||||.||||+++|+++.+.+.+.... +++.+++++++..|++|+.+ +..++.++..|+++++.+. .
T Consensus 147 ~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~l~~G~~~~~~~~~~~~ 225 (521)
T 3l8c_A 147 NYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLS-VMYWAPTLALGGTLFALPKELVA 225 (521)
T ss_dssp EEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGG-HHHHHHHHHTTCEEEECCGGGTT
T ss_pred cEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHH-HHHHHHHHhcCCEEEEcCHHHhh
Confidence 9999999999999999999999999888777655 77889999999999999988 7889999999999999886 4
Q ss_pred CHhHHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcc
Q psy12852 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNAN 791 (1102)
Q Consensus 714 ~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~ 791 (1102)
++..+++.+.++++|++.++|+++..++..... ....+++.+++||+++++++.+++.+.+++++++|.||+||+++.
T Consensus 226 ~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~ 305 (521)
T 3l8c_A 226 DFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVA 305 (521)
T ss_dssp CHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSC
T ss_pred CHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhh
Confidence 899999999999999999999999988776543 234577888999999999999999999987799999999999987
Q ss_pred cccCC--------CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 792 LVNMD--------NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 792 ~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
++... ....++|.+. ....+.++|++ |. +++.|++||++ ++|| .++.|
T Consensus 306 ~~~~~~~~~~~~~~~~~~vG~p~-------~~~~~~i~d~~-g~-----------~~~~g~~GEl~----v~g~-~v~~G 361 (521)
T 3l8c_A 306 LSAIEITREMVDNYTRLPIGYPK-------PDSPTYIIDED-GK-----------ELSSGEQGEII----VTGP-AVSKG 361 (521)
T ss_dssp SEEEEECHHHHHHCSSCEEEEEC-------TTSCEEEECTT-SC-----------BCCTTCCEEEE----EEST-TSCSC
T ss_pred hceeecccccccCCCcccccccc-------CCCEEEEECCC-cC-----------CCCCCCceEEE----eccc-ccChh
Confidence 65432 1233455543 34455566654 43 45788888866 5588 58899
Q ss_pred cCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEc
Q psy12852 864 YADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942 (1102)
Q Consensus 864 Y~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~ 942 (1102)
|++++ .|.+.|+.. ++++||+|||+|++|+||+++|+||+||+||++|+||+|.|||++|.++|+|.+|+|++...
T Consensus 362 Y~~~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~ 438 (521)
T 3l8c_A 362 YLNNPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYN 438 (521)
T ss_dssp BTTCHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCS
T ss_pred hcCCchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeec
Confidence 99987 677777532 45799999999999999999999999999999999999999999999999999999998554
Q ss_pred CCCCCceeEEEEEcCCCc-c-------CHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCCCC
Q psy12852 943 GDLDGRAGMIAIVDTSNQ-V-------DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPS 1010 (1102)
Q Consensus 943 ~~~~~~~~l~~~v~~~~~-~-------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~~~ 1010 (1102)
....++..+++++..+.. . ..++|+++|+++||.||+|..|+++++||+|+||||||++|++...+..
T Consensus 439 ~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 439 KEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp SSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 443344445555433221 1 1578999999999999999999999999999999999999999876543
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.5e-68 Score=639.01 Aligned_cols=471 Identities=20% Similarity=0.219 Sum_probs=360.9
Q ss_pred ccchhhhHHHHHHHHhhcccCCc-ccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHH
Q psy12852 476 QLEVDVTYSRFKQEASNARSTND-AAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551 (1102)
Q Consensus 476 ~~~~~~~~~~~~~~~~~a~~~P~-~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l 551 (1102)
.++..+.++.+.+ +++++|+ ++|+++++. |+||+++++++|+.|. .|++|+|+++|++++++++|||+
T Consensus 18 ~~~~~tl~~~l~~---~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~ 89 (505)
T 3nyq_A 18 GSHMSSLFPALSP---APTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAAL 89 (505)
T ss_dssp ------CCTTTSS---CCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHH
T ss_pred CcccchhHHHHHH---HHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHH
Confidence 3333444455544 4778876 999998775 9999999999999874 37899999999999999999999
Q ss_pred HcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCCCC
Q psy12852 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPS 631 (1102)
Q Consensus 552 ~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (1102)
++|++++|+||.+|.+++.+++++++++++|++..... .........+.++.. .......
T Consensus 90 ~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~-----~~~~~~~~~~~~~~~---------------~~~~~~~ 149 (505)
T 3nyq_A 90 LAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL-----PPALGALERVDVDVR---------------ARGAVPE 149 (505)
T ss_dssp HHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC-----CGGGTTSEEEECCTT---------------CCCCCCC
T ss_pred HhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc-----chhhccccccccccc---------------cccCCCC
Confidence 99999999999999999999999999999999865211 011122333332211 0011112
Q ss_pred CCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeC
Q psy12852 632 EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRT 711 (1102)
Q Consensus 632 ~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~ 711 (1102)
....++|++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++..++.+|..|+++++.+
T Consensus 150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~~ 229 (505)
T 3nyq_A 150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLG 229 (505)
T ss_dssp CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEECS
T ss_pred CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEECC
Confidence 45678899999999999999999999999999999999999999999999999999999997788999999999999999
Q ss_pred CCCHhHHHHHHhhcccccccccHHHHHHHHhccCC-----ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccc
Q psy12852 712 KFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-----EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786 (1102)
Q Consensus 712 ~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 786 (1102)
++++..+++.+ ++++|+++++|+++..|+..... ....+++.+++||+++++++.+++.+.++. +++|.||+|
T Consensus 230 ~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~-~~~~~YG~T 307 (505)
T 3nyq_A 230 RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR-RVIERYGMT 307 (505)
T ss_dssp SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC-CCEEEEEET
T ss_pred CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC-eeecccchh
Confidence 99999999999 88999999999999998773221 223467888999999999999999998866 899999999
Q ss_pred cCCcccccCCC---CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 787 EGNANLVNMDN---TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 787 E~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
|+++.++.... ...++|.+. ....+.++|++ |.++. .++.|++||++ +.|| .++.|
T Consensus 308 E~~~~~~~~~~~~~~~~~vG~p~-------~~~~~~i~d~~-g~~~~--------~~~~g~~GEl~----v~g~-~v~~G 366 (505)
T 3nyq_A 308 ETLMNTSVRADGEPRAGTVGVPL-------PGVELRLVEED-GTPIA--------ALDGESVGEIQ----VRGP-NLFTE 366 (505)
T ss_dssp TTEEEEECCTTSCCCTTCCCEEC-------TTCEEEEC------CCC--------CCCSCCCEEEE----EEST-TSCCE
T ss_pred hcccccccCCCCCCCCCCcccCC-------CCCEEEEECCC-CCCcc--------cCCCCceEEEE----EecC-chhhh
Confidence 99987664432 223344432 34556666655 54441 12336666655 5688 58999
Q ss_pred cCCch-HHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccC-CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEE
Q psy12852 864 YADKK-ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT-GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941 (1102)
Q Consensus 864 Y~~~~-~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~ 941 (1102)
|++++ .|.++|.. ++||+|||+|++++||.|+|+||+ |+|||++|+||+|.|||++|.+||+|.+|+|++++
T Consensus 367 Y~~~~~~t~~~f~~------~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~ 440 (505)
T 3nyq_A 367 YLNRPDATAAAFTE------DGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEP 440 (505)
T ss_dssp ETTCHHHHHHTBCT------TSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred hCCChhHhhhhhcC------CCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeE
Confidence 99997 56666643 689999999999999999999997 69999999999999999999999999999999977
Q ss_pred cCCCCCceeEEEEEcC--CCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhh
Q psy12852 942 VGDLDGRAGMIAIVDT--SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 942 ~~~~~~~~~l~~~v~~--~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~ 1004 (1102)
++. .++..+++++.. ....+.++|+++|+++||.||+|+.|+++++||+|+||||||++|++
T Consensus 441 ~~~-~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 441 DPD-LGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp ETT-TEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCC-CCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 664 334444444432 23567899999999999999999999999999999999999999985
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.6e-68 Score=639.10 Aligned_cols=471 Identities=17% Similarity=0.188 Sum_probs=358.8
Q ss_pred hcccCCcccchhhcch---HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcCceEeecCCCCCchh
Q psy12852 492 NARSTNDAAATTVKNL---EAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568 (1102)
Q Consensus 492 ~a~~~P~~~Av~~~~~---Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG~~~vpld~~~p~~~ 568 (1102)
+|+++|+++|+++.+. |+||+++++++|++|++. +|++|+|+++|++++++++|||+++|++++|+++.++.++
T Consensus 10 ~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~~~~~~~~ 86 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE 86 (501)
T ss_dssp HHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECCTTSCHHH
T ss_pred HHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecCccCCHHH
Confidence 5899999999998775 999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCC------CCChhHh---hccCCCCCCCCCCCCCCCCe
Q psy12852 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPD------LPNLSDL---MKTTPASEVKPSEPLQTSDS 639 (1102)
Q Consensus 569 l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 639 (1102)
+.+++++++++++|++........... .......+........ ...+... ................++|+
T Consensus 87 l~~~l~~~~~~~li~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 165 (501)
T 3ipl_A 87 MTNQMRSIDVQLIFCTLPLELRGFQIV-SLDDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDI 165 (501)
T ss_dssp HHHHHHHTTCCEEEESSCCCCTTSEEE-ETTC--------------------------------CCHHHHTCCCCCTTSE
T ss_pred HHHHHHhcCCCEEEEcccccccccccc-ccccceeeeeecccccccccccccccccchhhccccCCcccccccCCCCCCe
Confidence 999999999999999876543221100 0000000000000000 0000000 00000000011234678999
Q ss_pred EEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCHhHHH
Q psy12852 640 LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYF 719 (1102)
Q Consensus 640 a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~l~ 719 (1102)
+||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+ +..++.+++.|+++++.+++++..++
T Consensus 166 a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g-~~~~~~~l~~G~~~~~~~~~~~~~~~ 244 (501)
T 3ipl_A 166 ASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISG-LSVLLRAVIEGFTVRIVDKFNAEQIL 244 (501)
T ss_dssp EEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHH-HHHHHHHHHHTCEEEECSSCCHHHHH
T ss_pred EEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHH-HHHHHHHHHcCceEEeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 66789999999999999999999999
Q ss_pred HHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCcccccCC---
Q psy12852 720 RDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD--- 796 (1102)
Q Consensus 720 ~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--- 796 (1102)
+.|+++++|++.++|++++.|+........ +++.+++|||++++++.+++.+ ++ ++++|.||+||++..++...
T Consensus 245 ~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-~lr~i~~gG~~l~~~~~~~~~~-~~-~~~~~~YG~TE~~~~~~~~~~~~ 321 (501)
T 3ipl_A 245 TMIKNERITHISLVPQTLNWLMQQGLHEPY-NLQKILLGGAKLSATMIETALQ-YN-LPIYNSFGMTETCSQFLTATPEM 321 (501)
T ss_dssp HHHHHSCCCEEEECHHHHHHHHHHTCCSCT-TCCEEEECSSCCCHHHHHHHHH-TT-CCEEEEEEEGGGTEEEEEECHHH
T ss_pred HHHHHcCCcEEEchHHHHHHHHhcCCCCcC-cccEEEEeCCCCCHHHHHHHHH-hC-CCEeccccccccccceeecCccc
Confidence 999999999999999999999887654333 7888999999999999999987 44 48999999999987554322
Q ss_pred --CCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHH
Q psy12852 797 --NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKI 874 (1102)
Q Consensus 797 --~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f 874 (1102)
....++|.+. .+..+.++|++ .|..|| |++.|+ .++.||++++..+..|
T Consensus 322 ~~~~~~~~G~p~-------~~~~~~i~d~~-----------------~~~~GE----l~v~g~-~~~~gY~~~~~~t~~~ 372 (501)
T 3ipl_A 322 LHARPDTVGMPS-------ANVDVKIKNPN-----------------KEGHGE----LMIKGA-NVMNGYLYPTDLTGTF 372 (501)
T ss_dssp HHHCTTCCBEEC-------TTCEEEEESCC-----------------SSCCEE----EEEEST-TSCSCCSBSTTCCCSE
T ss_pred cccCCCCCCCCC-------CCcEEEEecCC-----------------CCCccE----EEEecc-chhhhhCcChhhcchh
Confidence 2334455543 23444445433 234455 556798 5899999987433333
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEE
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAI 954 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~ 954 (1102)
.++||+|||+|++++||+++|+||+||+||++|+||+|.|||++|.+||+|.+++|++++++. ....++++
T Consensus 373 -------~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~--~g~~~~a~ 443 (501)
T 3ipl_A 373 -------ENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDT--WGQVPKLY 443 (501)
T ss_dssp -------ETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETT--TEEEEEEE
T ss_pred -------cCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEeccc--CCceEEEE
Confidence 268999999999999999999999999999999999999999999999999999999976654 33444555
Q ss_pred EcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 955 VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 955 v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+..+...+.++|+++|+++||.||+|..|+++++||+|+||||||++|++....
T Consensus 444 v~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 444 FVSESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEESSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEeCCCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 545667889999999999999999999999999999999999999999987543
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.5e-65 Score=630.02 Aligned_cols=490 Identities=16% Similarity=0.185 Sum_probs=381.1
Q ss_pred hHHHHHHHHhhcccCCcccchhhcc-------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHcC
Q psy12852 482 TYSRFKQEASNARSTNDAAATTVKN-------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554 (1102)
Q Consensus 482 ~~~~~~~~~~~a~~~P~~~Av~~~~-------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~aG 554 (1102)
++..++.. +|+++|+++|+++.+ +|+||.++++++|++|++.|+++|++|+|+++|++++++++|||+++|
T Consensus 12 tl~~~l~~--~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 89 (590)
T 3kxw_A 12 SLVDVVRL--RALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAG 89 (590)
T ss_dssp SHHHHHHH--HHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred cHHHHHHH--HHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhC
Confidence 34444444 599999999998632 299999999999999999999999999999999999999999999999
Q ss_pred ceEeecCCCC---CchhhhhhhhccCceEEEEcCcchhHHHHHH-hcCCC---ceEEEecCCCCCCCChhHhhccCCCCC
Q psy12852 555 VISALINTNL---KKQPLVHSISTVKSKAIIVSALYYPEIEAIR-ESIPD---VKLFLLDETKPDLPNLSDLMKTTPASE 627 (1102)
Q Consensus 555 ~~~vpld~~~---p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (1102)
++++|++|.+ +.+++.++++++++++++++.+....+.... ...+. ..++..+. ...... .
T Consensus 90 ~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~--~ 157 (590)
T 3kxw_A 90 CIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIPAIALES----------IELNRS--S 157 (590)
T ss_dssp CEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEEEEEGGG----------CCGGGG--G
T ss_pred cEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccceeechh----------cccccc--c
Confidence 9999999988 4578999999999999999876554433221 11111 12221111 000000 0
Q ss_pred CCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceE
Q psy12852 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707 (1102)
Q Consensus 628 ~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~l 707 (1102)
........++|++||+|||||||.||||++||+++.+++.+....++++++|++++++|++|+.|+...++.+++.|+++
T Consensus 158 ~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~ 237 (590)
T 3kxw_A 158 SWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQA 237 (590)
T ss_dssp GCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEE
T ss_pred cCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceE
Confidence 11124567899999999999999999999999999999999999999999999999999999999555589999999999
Q ss_pred EEeCCC----CHhHHHHHHhhcccccccccHHHHHHHHhccC-----CccccccceeeeeccCCCHHHHHHHHHHhC---
Q psy12852 708 AIRTKF----SASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-----SEADYSHQVVKMIGVGMRGDIWAKFVKRFH--- 775 (1102)
Q Consensus 708 v~~~~~----~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-----~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~--- 775 (1102)
++.+++ ++..+++.|+++++|++.++|+++..+++... .....+++.+++|||++++++.++|.+.++
T Consensus 238 v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g 317 (590)
T 3kxw_A 238 IMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFG 317 (590)
T ss_dssp EECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGT
T ss_pred EEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcC
Confidence 998874 89999999999999999999999998876422 123457788899999999999999999884
Q ss_pred --cchhhhccccccCCcccccCCCC-------------------------CCcccccCCCCCCcCCCeeeEEeecCCCCC
Q psy12852 776 --VQTIIEFYGATEGNANLVNMDNT-------------------------EGAVGIIPTLLPTFLHPVAIIQFDLVENQP 828 (1102)
Q Consensus 776 --~~~l~n~YG~TE~~~~~~~~~~~-------------------------~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~ 828 (1102)
..+++|.||+||++++++..... .........+.|. +. +.++|++++.
T Consensus 318 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~---~~-v~i~d~~~~~- 392 (590)
T 3kxw_A 318 FRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPI---QE-VKIIDPDTLI- 392 (590)
T ss_dssp CCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEES---SE-EEEECTTTCC-
T ss_pred CCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCC---CC-eEEEcCCCCc-
Confidence 34799999999999877643211 1111111112121 11 4556666543
Q ss_pred cCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhcccCC--CCeEEEecceeEEecCccEEEEcc
Q psy12852 829 IRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVFKP--GDKYFLSGDMMVMDELGYLYFKDR 905 (1102)
Q Consensus 829 i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~~~--g~~~yrTGDl~~~~~dG~l~~~GR 905 (1102)
+++.|++|||+ ++|| .++.||+|++ .|.++|..+++.+ |.+||+|||+|+++ ||.|+|+||
T Consensus 393 ----------~~~~g~~GEl~----v~g~-~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 393 ----------PCDFDQVGEIW----VQSN-SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp ----------BCCTTBCEEEE----EEST-TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred ----------CCCCCCEEEEE----EeCC-cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 45788888866 5588 5899999987 6778887655543 34599999999999 999999999
Q ss_pred CCCeEEeCceeechHHHHHHH-HhcCCcc--eeEEEEEEcCCCCCceeEEEEEcCCC---ccCHHHHHHHHHccCCC-CC
Q psy12852 906 TGDTYRWKGENVSTMEVEATI-SKYLPYT--EFTVYGVKVGDLDGRAGMIAIVDTSN---QVDLKLLVQGLDANLPA-YA 978 (1102)
Q Consensus 906 ~dd~Iki~G~ri~~~eIE~~l-~~~~~V~--~a~vv~~~~~~~~~~~~l~~~v~~~~---~~~~~~l~~~l~~~Lp~-~~ 978 (1102)
+|||||++|+||+|.|||++| ..+|+|. +|+|++++++. ++...++++.... ..+.++++++|+++|+. |+
T Consensus 457 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~ 534 (590)
T 3kxw_A 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH--EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQ 534 (590)
T ss_dssp SSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT--EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC--CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999 8899998 78888876654 4444444443322 45678899999999985 78
Q ss_pred cce-EEEE--ecCccCCCCccchhhhhhhcCCC
Q psy12852 979 RPL-FVRI--MKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 979 ~P~-~i~~--l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+|. .+++ +++||+|+||||||++|+++..+
T Consensus 535 ~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 535 LEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred CceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 886 4444 47999999999999999987644
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.8e-64 Score=618.94 Aligned_cols=487 Identities=17% Similarity=0.192 Sum_probs=388.0
Q ss_pred hhhHHHHHHHHhhcccCCcccchhhcc------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHHHHHc
Q psy12852 480 DVTYSRFKQEASNARSTNDAAATTVKN------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553 (1102)
Q Consensus 480 ~~~~~~~~~~~~~a~~~P~~~Av~~~~------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA~l~a 553 (1102)
..++..+++. +|+++|+.+++.... +|+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+++
T Consensus 20 ~~tl~~~l~~--~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (576)
T 3gqw_A 20 FPTLVDALDY--AALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYA 97 (576)
T ss_dssp CSSHHHHHHH--HTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHH--HhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 3445555555 689999999987532 39999999999999999999999999999999999999999999999
Q ss_pred CceEeecCCCCC-------chhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCC
Q psy12852 554 GVISALINTNLK-------KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626 (1102)
Q Consensus 554 G~~~vpld~~~p-------~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (1102)
|++++|+++.++ .+++.+++++++++++|++.+....+.......+...++... ........
T Consensus 98 G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~ 166 (576)
T 3gqw_A 98 GLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHA-----------WFKALPEA 166 (576)
T ss_dssp TCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGCTTCEEEEHH-----------HHHTSCCC
T ss_pred CCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccCCcceecchh-----------hhhccccc
Confidence 999999999999 799999999999999999998888777766555544443211 11111111
Q ss_pred CCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhc-cCCCCCcEEEEecCchhhhhHHHHHHhHhhcCc
Q psy12852 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705 (1102)
Q Consensus 627 ~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~-~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~ 705 (1102)
........+++++||+|||||||.||||+++|+++.+++.+.... ++++++|++++++|++|+.|+...++.++..|+
T Consensus 167 -~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~ 245 (576)
T 3gqw_A 167 -DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPVATQL 245 (576)
T ss_dssp -CCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHHTHHHHHTTC
T ss_pred -ccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHHHHHHHhcCc
Confidence 111234568999999999999999999999999999988776654 889999999999999999996666888899999
Q ss_pred eEEEeCC----CCHhHHHHHHhhcccccccccHHHHHHHHhccCC-----ccccccceeeeeccCCCHHHHHHHHHHhC-
Q psy12852 706 SIAIRTK----FSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES-----EADYSHQVVKMIGVGMRGDIWAKFVKRFH- 775 (1102)
Q Consensus 706 ~lv~~~~----~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-----~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~- 775 (1102)
++++.+. +++..+++.|+++++|++.++|++++.+...... ....+++.+++|||++++++.++|.+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 325 (576)
T 3gqw_A 246 SVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQ 325 (576)
T ss_dssp CEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGG
T ss_pred eEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHHHHHHHHHhh
Confidence 9998874 6899999999999999999999999887654321 22456788899999999999999999985
Q ss_pred ----cchhhhccccccCCcccccCCCCCCcc------------------c-------ccCCCCCCcCCCeeeEEeecCCC
Q psy12852 776 ----VQTIIEFYGATEGNANLVNMDNTEGAV------------------G-------IIPTLLPTFLHPVAIIQFDLVEN 826 (1102)
Q Consensus 776 ----~~~l~n~YG~TE~~~~~~~~~~~~~~~------------------g-------~~~~~~~~~~~~~~~~~~d~~~g 826 (1102)
+.+++|.||+||++++++......+.. | ...+.+.+. .+..+.++|++ |
T Consensus 326 ~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~-~~~~~~i~d~~-g 403 (576)
T 3gqw_A 326 VNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKAL-PEHGIEIRNEA-G 403 (576)
T ss_dssp GTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEEC-TTCEEEEECTT-S
T ss_pred cCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcC-CCCeEEEECCC-C
Confidence 568999999999998876543221100 0 000111111 34445555533 4
Q ss_pred CCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccC
Q psy12852 827 QPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906 (1102)
Q Consensus 827 ~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~ 906 (1102)
. +++.|++||++ ++|| .++.||++++.++..+.. ++||+|||+|++ +||.|+|+||+
T Consensus 404 ~-----------~~~~g~~GEl~----v~g~-~~~~gY~~~~~~~~~~~~------~g~~~TGDl~~~-~dG~l~~~GR~ 460 (576)
T 3gqw_A 404 M-----------PVAERVVGHIC----ISGP-SLMSGYFGDQVSQDEIAA------TGWLDTGDLGYL-LDGYLYVTGRI 460 (576)
T ss_dssp C-----------BCCTTBCEEEE----EEST-TSCCCBTTCHHHHHHHHH------HSCEEEEEEEEE-ETTEEEEEEET
T ss_pred C-----------CCCCCCeEEEE----EeCc-cccccccCCccccccccC------CCeeeccceEEE-ECCEEEEEecC
Confidence 3 45888888876 4588 589999999866666654 689999999999 79999999999
Q ss_pred CCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccC-CCCCcceEEEE
Q psy12852 907 GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANL-PAYARPLFVRI 985 (1102)
Q Consensus 907 dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~L-p~~~~P~~i~~ 985 (1102)
|||||++|+||+|.|||++|.+||+|.+++|+++..+. ....+.+++........++++++++++| +.|++|..+.+
T Consensus 461 dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~ 538 (576)
T 3gqw_A 461 KDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDL 538 (576)
T ss_dssp TTCEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred cceEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEE
Confidence 99999999999999999999999999998888866543 3333333334444556778999999998 78999999988
Q ss_pred ec--CccCCCCccchhhhhhhcCC
Q psy12852 986 MK--AIEMTGTFKIKKIQLQNEGF 1007 (1102)
Q Consensus 986 l~--~lP~t~~GKidr~~L~~~~~ 1007 (1102)
++ +||+|+||||||++|++.+.
T Consensus 539 v~~~~lP~t~~GKi~r~~l~~~~~ 562 (576)
T 3gqw_A 539 LPPHSIPRTSSGKPARAEAKKRYQ 562 (576)
T ss_dssp ECSSCSCBCTTSSBCHHHHHHHHH
T ss_pred ECCCCcCcCCCccchHHHHHHHHH
Confidence 87 89999999999999998653
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=5.1e-66 Score=629.23 Aligned_cols=479 Identities=15% Similarity=0.159 Sum_probs=291.0
Q ss_pred HHHHHHHHhhcccCCcccchhhcc-------------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCchhHHHHHHH
Q psy12852 483 YSRFKQEASNARSTNDAAATTVKN-------------LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549 (1102)
Q Consensus 483 ~~~~~~~~~~a~~~P~~~Av~~~~-------------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~~~vv~~lA 549 (1102)
.+.|.+ +|+++|+++|+++.+ +|+||+++++++|+.|.+.|+ +|++|+|+++|++++++++||
T Consensus 23 ~~~l~~---~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA 98 (562)
T 3ite_A 23 SHYIET---WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVG 98 (562)
T ss_dssp THHHHH---HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHH
T ss_pred HHHHHH---HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHH
Confidence 444444 599999999998643 399999999999999999999 799999999999999999999
Q ss_pred HHHcCceEeecCCCCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCCceEEEecCCCCCCCChhHhhccCCCCCCC
Q psy12852 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629 (1102)
Q Consensus 550 ~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1102)
|+++|++++|++|.++.+++.+++++++++++|++......+. ......++..+ ...+.+..........
T Consensus 99 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~- 168 (562)
T 3ite_A 99 IMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE----LPPETKVLDTK-----NQSFIENLSTQDTSDI- 168 (562)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC----CCTTCEEEETT-----CHHHHHHHHHSCCSCC-
T ss_pred HHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc----cCccceeeccc-----chhhhhhccccccccc-
Confidence 9999999999999999999999999999999999876443210 01112222211 1112222222222111
Q ss_pred CCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhh--------ccCCCCCcEEEEecCchhhhhHHHHHHhHh
Q psy12852 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH--------LLSLGSGDVIYNCLPMYHSAGGLIGTIPAL 701 (1102)
Q Consensus 630 ~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~--------~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l 701 (1102)
.....+++++||+|||||||.||||+++|+++.+.+.+... .+.+...+++++..|++|+.+ +..++.++
T Consensus 169 -~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l 246 (562)
T 3ite_A 169 -LNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVH-IGEMFLAW 246 (562)
T ss_dssp -CCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHH-HHHHHHHH
T ss_pred -ccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhh-HHHHHHHH
Confidence 13456788999999999999999999999999887765443 345788999999999999987 88899999
Q ss_pred hcCceEEEeCCCC-HhHHHHHHhhcccccccccHHHHHHHHhccCCccccccceeeeeccCCCHHHHHHHHHHhCcchhh
Q psy12852 702 ILGSSIAIRTKFS-ASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780 (1102)
Q Consensus 702 ~~G~~lv~~~~~~-~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~ 780 (1102)
..|+++++.+++. +..+.+.++++++|++.++|++++.+...+ ....+++.+++||+++++++.++|.+.++. +++
T Consensus 247 ~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~--~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~-~~~ 323 (562)
T 3ite_A 247 RFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVP--EDAPHLVYLGVGGEKMTPRTQQIWSSSDRV-ALV 323 (562)
T ss_dssp HTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCG--GGSTTCCEEEEESSCCCHHHHHHHTTCSSC-EEE
T ss_pred hcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCc--cccCceEEEEEecCCCCHHHHHHHhhCCCc-EEE
Confidence 9999999987643 577889999999999999999998874433 235578889999999999999999886654 899
Q ss_pred hccccccCCcccccCCC----CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecC
Q psy12852 781 EFYGATEGNANLVNMDN----TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856 (1102)
Q Consensus 781 n~YG~TE~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G 856 (1102)
|.||+||+++.++.... ...++|.+. .+..+.++|++++. +++.|++||++ ++|
T Consensus 324 ~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~-------~~~~~~i~d~~~~~-----------~~~~g~~GEl~----v~g 381 (562)
T 3ite_A 324 NVYGPTEVTIGCSAGRILPDSDTRCIGHPL-------GDSVAHVLAPGSNE-----------HVKKGMAGELV----IEG 381 (562)
T ss_dssp EEECCGGGCSCSEEEECCTTSCTTEEEEEC-------TTCEEEEECTTSSC-----------BCCTTSCEEEE----EES
T ss_pred EeeccchheeeeeeeeecCCCCCccccccC-------CCCeEEEEeCCCCC-----------CCCCCCceEEE----Eec
Confidence 99999999877654322 223444442 34556677766554 34788888876 458
Q ss_pred CcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHHHhc-CCccee
Q psy12852 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY-LPYTEF 935 (1102)
Q Consensus 857 ~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~-~~V~~a 935 (1102)
| .++.||+|++..+. |. +.+|++||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|.++ +.+.++
T Consensus 382 ~-~v~~GY~~~p~~t~-~~---~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~ 456 (562)
T 3ite_A 382 S-LVANGYLNRPDAKG-FC---DINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDV 456 (562)
T ss_dssp T-TSCCEESSCTTCCS-EE---EETTEEEEEEEEEEEECTTSCEEEEEEC------------------------------
T ss_pred c-ccchhhCCCccccc-cc---cCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeE
Confidence 8 58999999874332 21 235678999999999999999999999999999999999999999999998 778888
Q ss_pred EEEEEEcCCCCCceeEEEEEcC-CCcc-------------CHHHHHHHHHccCCCCCcceEEEEecCccCC-CCccchhh
Q psy12852 936 TVYGVKVGDLDGRAGMIAIVDT-SNQV-------------DLKLLVQGLDANLPAYARPLFVRIMKAIEMT-GTFKIKKI 1000 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v~~-~~~~-------------~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t-~~GKidr~ 1000 (1102)
+|++.+++. .++..+++++.. +... ..++|+++|+++||.||+|+.|+++++||+| +||||||+
T Consensus 457 ~v~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~ 535 (562)
T 3ite_A 457 VTLLLNHPG-TSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAK 535 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEecCCC-CcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHH
Confidence 888766654 344445555432 2221 2358999999999999999999999999998 99999999
Q ss_pred hhhhcCCC
Q psy12852 1001 QLQNEGFD 1008 (1102)
Q Consensus 1001 ~L~~~~~~ 1008 (1102)
+|+++...
T Consensus 536 ~L~~~~~~ 543 (562)
T 3ite_A 536 ALEHMFHT 543 (562)
T ss_dssp --------
T ss_pred HHHHHHhc
Confidence 99987654
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.2e-52 Score=499.78 Aligned_cols=399 Identities=16% Similarity=0.159 Sum_probs=300.4
Q ss_pred hccccccchhhhHHHHHHHHhhcccCCcccchhhcc------------hHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcC
Q psy12852 471 QSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKN------------LEAQIDEYSNKIARILQDDGFKKGDVLALMCE 538 (1102)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~a~~~P~~~Av~~~~------------~Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~ 538 (1102)
+.+....+..+..+.|.+ +|+++|+++|+++.+ +|+||.++++++|+.|++.|+ +|++|+|+++
T Consensus 15 ~~~~~~~~~~tl~~~l~~---~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~ 90 (480)
T 3t5a_A 15 VPRGSHMSVRSLPAALRA---CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAP 90 (480)
T ss_dssp ---------CCHHHHHHH---HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECC
T ss_pred CcccCCCCcccHHHHHHH---HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcC
Confidence 334444454555555555 489999999998754 399999999999999999996 9999999999
Q ss_pred CchhHHHHHHHHHHcCceEeecCC---CCCchhhhhhhhccCceEEEEcCcchhHHHHHHhcCCC---ceEEEecCCCCC
Q psy12852 539 NRPEYVGVWLGAAKLGVISALINT---NLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPD 612 (1102)
Q Consensus 539 ~~~~~vv~~lA~l~aG~~~vpld~---~~p~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 612 (1102)
|++++++++|||+++|+++||+++ .++.+++.+++++++++++|++......+.......+. ..++.++...
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD-- 168 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC--
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc--
Confidence 999999999999999999999999 88999999999999999999999887766654433322 2333333211
Q ss_pred CCChhHhhccCCCCCCCCCCCCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCC------CcEEEEecC
Q psy12852 613 LPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS------GDVIYNCLP 686 (1102)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~------~d~~l~~~p 686 (1102)
... ..........+++++||+|||||||.||||++||+++.+++.+....+++.. +|++++++|
T Consensus 169 ---------~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 238 (480)
T 3t5a_A 169 ---------LDA-PNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLP 238 (480)
T ss_dssp ---------TTC-C---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCC
T ss_pred ---------ccc-ccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCC
Confidence 000 1111224567889999999999999999999999999999988888888887 999999999
Q ss_pred chhhhhHHHHHHhHhhcCceEEEeCCC----CHhHHHHHHhhcccccccccHHHHHHHHhcc------CCccccccceee
Q psy12852 687 MYHSAGGLIGTIPALILGSSIAIRTKF----SASNYFRDCAKYKCNAGIYIGEMCRYLLASK------ESEADYSHQVVK 756 (1102)
Q Consensus 687 l~~~~~~~~~i~~~l~~G~~lv~~~~~----~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~------~~~~~~~l~~~~ 756 (1102)
++|+.|+...++.+|+.|+++++.++. ++..+++.++++++| +.++|+++..++... ......+++.++
T Consensus 239 l~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~ 317 (480)
T 3t5a_A 239 FYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTIL 317 (480)
T ss_dssp TTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEE
T ss_pred CcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheee
Confidence 999999778899999999999998763 899999999999999 889999888776531 123345788899
Q ss_pred eeccCCCHHHHHHHHHHhC-----cchhhhccccccCCcccccCCCCCCc----------------------ccccCCCC
Q psy12852 757 MIGVGMRGDIWAKFVKRFH-----VQTIIEFYGATEGNANLVNMDNTEGA----------------------VGIIPTLL 809 (1102)
Q Consensus 757 ~~Ge~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~~----------------------~g~~~~~~ 809 (1102)
+|||+++++++++|.+.++ .++++|.||+||++++++........ .....+.+
T Consensus 318 ~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G 397 (480)
T 3t5a_A 318 SGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYM 397 (480)
T ss_dssp ECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEE
T ss_pred ecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecC
Confidence 9999999999999999983 45899999999999877654321100 00111122
Q ss_pred CCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCch-HHHHHHhhccc-----CCCC
Q psy12852 810 PTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK-ESQKKILENVF-----KPGD 883 (1102)
Q Consensus 810 ~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~-~t~~~f~~~~~-----~~g~ 883 (1102)
.+. . ..+.++|+++|. ++|.|++|||+ ++|| .++.||+|+| .|.++|..+++ .+++
T Consensus 398 ~p~-~-~~~~ivd~~~g~-----------~~~~g~~GEl~----v~g~-~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~ 459 (480)
T 3t5a_A 398 LPR-S-PIVRIVDSDTCI-----------ECPDGTVGEIW----VHGD-NVANGYWQKPDESERTFGGKIVTPSPGTPEG 459 (480)
T ss_dssp CCS-S-SEEEEEETTTTE-----------ECCTTBCEEEE----EEST-TSCCCBTTBHHHHHHHHCBCCSSCCTTCCCC
T ss_pred ccc-C-CEEEEEcCCCCc-----------CCCCCCEEEEE----EeCC-ccccccccCcchhHHHHhhhhccccCCCCCC
Confidence 222 2 567778877554 45888888866 5588 5899999987 77788854332 2257
Q ss_pred eEEEecceeEEecCccEEEEcc
Q psy12852 884 KYFLSGDMMVMDELGYLYFKDR 905 (1102)
Q Consensus 884 ~~yrTGDl~~~~~dG~l~~~GR 905 (1102)
+||||||+|+++ ||+|+|+||
T Consensus 460 ~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 460 PWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CBEEEEEEEEEE-TTEEEECC-
T ss_pred CeeeccceeeEE-CCEEEEeCC
Confidence 899999999997 999999999
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.7e-51 Score=467.18 Aligned_cols=314 Identities=15% Similarity=0.143 Sum_probs=249.5
Q ss_pred CCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhhhccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEEeCCCCH
Q psy12852 636 TSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715 (1102)
Q Consensus 636 ~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 715 (1102)
.+++|||+|||||||.||||++||+++.+++.+....++++++|++++++|++|++| +..++.++..|+++++.++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~g-l~~~~~~l~~g~~~~~~~~~-- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAG-LMMLVRGMELDWELTVTEPT-- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH-HHHHHHHHHHTCEEEEECCC--
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHH-HHHHHHHHHhCcEEEecCcc--
Confidence 368999999999999999999999999999999999999999999999999999998 77889999999999998752
Q ss_pred hHHHHHHhhcccccccccHHHHHHHHhccCC-ccccccceeeeeccCCCHHHHHHHHHHhCcchhhhccccccCCccccc
Q psy12852 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKES-EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN 794 (1102)
Q Consensus 716 ~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~-~~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~ 794 (1102)
...++.|+++++|++.++|++++.|++.... ....+++.+++||+++++++.+++.+ ++ .+++|.||+||++..++.
T Consensus 113 ~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~-~~~~~~YG~TEt~~~~~~ 190 (358)
T 4gs5_A 113 ANPLAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAPVNHALAMQISD-LA-MPVYQSYGMTETVSHVAL 190 (358)
T ss_dssp SCTTTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSCCCHHHHHHHHT-CS-SCEEEEEECGGGSSEEEE
T ss_pred ccHHHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccCCCchheecccc-cC-ceEEeccccccccceeec
Confidence 2335678999999999999999999886543 34457888899999999999999976 34 489999999999877654
Q ss_pred CCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccccCCchHHHHHH
Q psy12852 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKI 874 (1102)
Q Consensus 795 ~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f 874 (1102)
........|... +..+ | ..++.+..||++.+ |+.
T Consensus 191 ~~~~~~~~g~~~-------------~~~p--g-----------v~~~~~~~Gel~~~----g~~---------------- 224 (358)
T 4gs5_A 191 KALNGPEASELY-------------VFLP--G-----------IQYGVDERGCLHIS----GAV---------------- 224 (358)
T ss_dssp EECSSTTCCSCE-------------EECT--T-----------CEEEECTTSEEEEE----SGG----------------
T ss_pred ccccccccceee-------------ccCC--C-----------eEEEecCcCceEEe----ccc----------------
Confidence 332221111110 0000 1 11234556766532 431
Q ss_pred hhcccCCCCeEEEecceeEEecCccEEEEccCCCeEEeCceeechHHHHHHH---HhcCCcceeEEEE-EEcCCCCCcee
Q psy12852 875 LENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI---SKYLPYTEFTVYG-VKVGDLDGRAG 950 (1102)
Q Consensus 875 ~~~~~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~Iki~G~ri~~~eIE~~l---~~~~~V~~a~vv~-~~~~~~~~~~~ 950 (1102)
..++||+|||+|++|+|| ++|+||+||+||++|+||+|.|||++| .+||+|.+|+|+. .+++ ..++..
T Consensus 225 ------~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~-~~ge~~ 296 (358)
T 4gs5_A 225 ------TNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDA-KLGQKL 296 (358)
T ss_dssp ------GTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEET-TTEEEE
T ss_pred ------ccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCc-cCCEEE
Confidence 126899999999999988 778899999999999999999999877 4689999998874 3333 234444
Q ss_pred EEEEEcCCCccCHHHHHHHHHccCCCCCcceEEEEecCccCCCCccchhhhhhhcCCC
Q psy12852 951 MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008 (1102)
Q Consensus 951 l~~~v~~~~~~~~~~l~~~l~~~Lp~~~~P~~i~~l~~lP~t~~GKidr~~L~~~~~~ 1008 (1102)
+++++......+.++|+++|+++||.||+|++|+++++||+|+||||||++|++...+
T Consensus 297 ~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 297 VLVIENAMPEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred EEEEECCCCCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 4444444455677899999999999999999999999999999999999999987544
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.3e-44 Score=426.06 Aligned_cols=328 Identities=16% Similarity=0.099 Sum_probs=255.0
Q ss_pred CCCC-CCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEE
Q psy12852 633 PLQT-SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 633 ~~~~-~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv 708 (1102)
...+ +++++|+|||||||.||||+++|+++.+...... ..++++++|++++.+|++|+.+.+..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8899999999999999999999999987766553 34589999999999999887777888899999999999
Q ss_pred EeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccc
Q psy12852 709 IRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 709 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 784 (1102)
+.+..++..+++.|+++++|+++++|+++..|++..... ...+++.+++|||++++++.++|.+.++. +++|.||
T Consensus 161 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 239 (436)
T 3qov_A 161 PAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV-KAYNSFG 239 (436)
T ss_dssp CCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc-cEEecCc
Confidence 998899999999999999999999999999998753221 24578889999999999999999999865 8999999
Q ss_pred cccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccccc
Q psy12852 785 ATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864 (1102)
Q Consensus 785 ~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~gY 864 (1102)
+||+++.++.... ....|... + .....+.++|+++|.+ ++.|+.||++++ |+.
T Consensus 240 ~TE~~~~~~~~~~-~~~~g~~~---~--~~~~~v~i~d~~~g~~-----------~~~g~~Gel~v~----~~~------ 292 (436)
T 3qov_A 240 MTEMNGPGVAFEC-QEQNGMHF---W--EDCYLVEIIDPETGEP-----------VPEGEIGELVLT----TLD------ 292 (436)
T ss_dssp EGGGTEEEEEEEC-TTCSSEEE---C--TTTEEEEEECTTTCSB-----------CSTTCCEEEEEE----ESS------
T ss_pred chhhcCCeeEEec-CCCCeeEE---c--cCceEEEEEECCCCCC-----------CCCCCceEEEEe----ccC------
Confidence 9999654322221 11122111 1 1345666777666654 488899988754 331
Q ss_pred CCchHHHHHHhhcccCCCCeEEEecceeEEecCc------c---EEEEccCCCeEEeCceeechHHHHHHHHhcCCccee
Q psy12852 865 ADKKESQKKILENVFKPGDKYFLSGDMMVMDELG------Y---LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEF 935 (1102)
Q Consensus 865 ~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~dG------~---l~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a 935 (1102)
+ +.| ..+||+|||+|+++++| . ++|+||+||+||++|+||+|.|||++|.+||+|.++
T Consensus 293 -~-----~~~-------~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~ 359 (436)
T 3qov_A 293 -R-----EMM-------PLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSN 359 (436)
T ss_dssp -C-----CSS-------CCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEE
T ss_pred -c-----CCc-------eEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCc
Confidence 1 011 26799999999999998 5 699999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCCceeEEEEEcC-CCccC----HHHHHHHHHccCCCC-CcceEEEEec--CccCCCCccchhhhhhh
Q psy12852 936 TVYGVKVGDLDGRAGMIAIVDT-SNQVD----LKLLVQGLDANLPAY-ARPLFVRIMK--AIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 936 ~vv~~~~~~~~~~~~l~~~v~~-~~~~~----~~~l~~~l~~~Lp~~-~~P~~i~~l~--~lP~t~~GKidr~~L~~ 1004 (1102)
+|+++..+. +...+++++.. +...+ .++++++|+++|+.| ++|..+.+++ +||+|+ ||++|...++
T Consensus 360 ~vv~~~~~~--~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~R 433 (436)
T 3qov_A 360 YLITLETVN--NQDEMIVEVELSDLSTDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKDLR 433 (436)
T ss_dssp EEEEEEEET--TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEEECS
T ss_pred EEEEEEcCC--CCcEEEEEEEEcCccccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEEecC
Confidence 999876654 34445555533 22233 678999999999999 9999999999 999999 9999976543
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.5e-44 Score=426.34 Aligned_cols=328 Identities=13% Similarity=0.059 Sum_probs=257.6
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCchhhhhHHHHHHhHhhcCceEEE
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
...++++++|+|||||||.||||+++|+++.+...... ..++++++|++++.+|+++..+.+..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45678999999999999999999999999987655443 367899999999999985444447788999999999999
Q ss_pred eCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhcccc
Q psy12852 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785 (1102)
Q Consensus 710 ~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~ 785 (1102)
.+.+++..+++.|+++++|++.++|+++..|++..... ...+++.+++|||++++++.++|.+.++. +++|.||+
T Consensus 168 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG~ 246 (443)
T 2y4o_A 168 MSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI-DALDIYGL 246 (443)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC-EEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc-CEEeccCc
Confidence 88889999999999999999999999999987653211 13577888999999999999999999864 89999999
Q ss_pred ccCCcc--cccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCcccccc
Q psy12852 786 TEGNAN--LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863 (1102)
Q Consensus 786 TE~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~g 863 (1102)
||+++. +..... ...|... ......+.++|+++|.+ +|.|+.||++++ |..
T Consensus 247 TE~~g~~~~~~~~~--~~~g~~~-----~~~~~~~~i~d~~~g~~-----------~~~G~~Gel~v~----~~t----- 299 (443)
T 2y4o_A 247 SEVMGPGVACECVE--TKDGPVI-----WEDHFYPEIIDPVTGEV-----------LPDGSQGELVFT----SLT----- 299 (443)
T ss_dssp TTTTEEEEEEECTT--TCCSEEE-----CTTTEEEEEECTTTCCB-----------CCTTCCEEEEEE----ESS-----
T ss_pred hhhcCCeEEeccCC--CCCceEE-----ccCCeEEEEEcCCCCCC-----------CCCCCceEEEEe----CCC-----
Confidence 998543 222221 1112211 11345666777666654 478889988744 321
Q ss_pred cCCchHHHHHHhhcccCCCCeEEEecceeEEecC-ccE-----EEEccCCCeEEeCceeechHHHHHHHHhcCCcceeEE
Q psy12852 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDEL-GYL-----YFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937 (1102)
Q Consensus 864 Y~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d-G~l-----~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~v 937 (1102)
+ +.| ..+||+|||+|+++++ |++ +|+||+||+||++|++|+|.|||++|.++|+|.+++|
T Consensus 300 --~-----~~~-------p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~v 365 (443)
T 2y4o_A 300 --K-----EAM-------PVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQ 365 (443)
T ss_dssp --C-----SSS-------CCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEE
T ss_pred --c-----ccC-------hhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEE
Confidence 1 111 1579999999999999 997 8999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCceeEEEEEcCC-------CccCHHHHHHHHHccCCCCC-cceEEEEe--cCccCCCCccchhhhhhh
Q psy12852 938 YGVKVGDLDGRAGMIAIVDTS-------NQVDLKLLVQGLDANLPAYA-RPLFVRIM--KAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 938 v~~~~~~~~~~~~l~~~v~~~-------~~~~~~~l~~~l~~~Lp~~~-~P~~i~~l--~~lP~t~~GKidr~~L~~ 1004 (1102)
++++++.. ++ .++++++.. ...+.++++++|+++|+.|+ +|..+.++ ++||+|+|||++|+..++
T Consensus 366 v~~~~~~~-~~-~~~a~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 366 ITLSRDGH-MD-RLDLAVELRSEAAASVTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp EEEEEETT-EE-EEEEEEEECHHHHTTCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred EEEecCCC-Cc-eEEEEEEECCcccccchhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 88766542 33 344444322 23456889999999999985 99888887 599999999999987554
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.7e-43 Score=416.56 Aligned_cols=326 Identities=11% Similarity=0.051 Sum_probs=256.6
Q ss_pred CCCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhhh---hccCCCCCcEEEEecCch-hhhhHHHHHHhHhhcCceEE
Q psy12852 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK---HLLSLGSGDVIYNCLPMY-HSAGGLIGTIPALILGSSIA 708 (1102)
Q Consensus 633 ~~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~pl~-~~~~~~~~i~~~l~~G~~lv 708 (1102)
...++++++|+|||||||.||||+++|+++........ ..++++++|++++.+|+. |..+ +..++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LGAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hHHHHHHHHcCCEEE
Confidence 34668999999999999999999999999987665433 357899999999999984 5554 777889999999999
Q ss_pred EeCCCCHhHHHHHHhhcccccccccHHHHHHHHhccCCc----cccccceeeeeccCCCHHHHHHHHHHhCcchhhhccc
Q psy12852 709 IRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE----ADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYG 784 (1102)
Q Consensus 709 ~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~----~~~~l~~~~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 784 (1102)
+.+.+++..+++.|+++++|+++++|+++..|++..... ...+++.+++|||++++++.+++.+.++. +++|.||
T Consensus 165 ~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~-~v~~~YG 243 (437)
T 2y27_A 165 PFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI-DAVDIYG 243 (437)
T ss_dssp CCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS-EEEEEEE
T ss_pred eCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc-CEEecCC
Confidence 888889999999999999999999999999987753211 13577888999999999999999998864 8999999
Q ss_pred cccCCcc--cccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCCCCcceEEEEeecCCccccc
Q psy12852 785 ATEGNAN--LVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFY 862 (1102)
Q Consensus 785 ~TE~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g~~Gel~gei~~~G~~~~~~ 862 (1102)
+||+++. +..... ...|.. .......+.++|+++|.+ +|.|+.||++++ |..
T Consensus 244 ~TE~~g~~~~~~~~~--~~~g~~-----~~~~~~~~~i~d~~~g~~-----------~~~g~~Gel~v~----~~t---- 297 (437)
T 2y27_A 244 LSEVMGPGVASECVE--TKDGPT-----IWEDHFYPEIIDPETGEV-----------LPDGELGELVFT----SLT---- 297 (437)
T ss_dssp ETTTTEEEEEECCTT--TCSSCE-----ECTTTEEEEEECTTTCCB-----------CCTTCCEEEEEE----ESS----
T ss_pred chhhcCCeeEEecCC--CCCcee-----EccCceEEEEEcCCCCCC-----------CCCCCccEEEEe----cCC----
Confidence 9998533 222221 111211 111345666777666654 478888988744 321
Q ss_pred ccCCchHHHHHHhhcccCCCCeEEEecceeEEec-CccE-----EEEccCCCeEEeCceeechHHHHHHHHhcCCcceeE
Q psy12852 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDE-LGYL-----YFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFT 936 (1102)
Q Consensus 863 gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~-dG~l-----~~~GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~ 936 (1102)
+ +.| ..+||+|||+|++++ +|++ +|+||+||+||++|++|+|.|||++|.+||+|.+++
T Consensus 298 ---~-----~~~-------~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~ 362 (437)
T 2y27_A 298 ---K-----EAL-------PIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHY 362 (437)
T ss_dssp ---C-----SSS-------CCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCC
T ss_pred ---c-----CCc-------hhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccE
Confidence 1 111 157999999999999 6996 999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCceeEEEEEcCCCc-----cCHHHHHHHHHccCCCC-CcceEEEEe--cCccCCCCccchhhhhhh
Q psy12852 937 VYGVKVGDLDGRAGMIAIVDTSNQ-----VDLKLLVQGLDANLPAY-ARPLFVRIM--KAIEMTGTFKIKKIQLQN 1004 (1102)
Q Consensus 937 vv~~~~~~~~~~~~l~~~v~~~~~-----~~~~~l~~~l~~~Lp~~-~~P~~i~~l--~~lP~t~~GKidr~~L~~ 1004 (1102)
|++++++. +...+++++..... .+.++++++|+++||.| ++|..+.++ ++||+|+ ||++|+..++
T Consensus 363 vv~~~~~~--~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~R 435 (437)
T 2y27_A 363 QIVLTKEG--PLDVLTLNVEPCPETAPDTAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVVDKR 435 (437)
T ss_dssp EEEEEEET--TEEEEEEEECBCTTTTTCHHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEEECC
T ss_pred EEEEeecC--CCceEEEEEEECCCccchhhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEEecC
Confidence 88876654 33455566543322 35678999999999998 599988888 5999999 9999987543
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.94 E-value=4.6e-27 Score=269.74 Aligned_cols=242 Identities=14% Similarity=0.020 Sum_probs=173.9
Q ss_pred CCCCCeEEEEECCCCCCCCceEEeccHHHHHhhhhh---hhccCCCCCcEEEEecCc-hhhhhHHHHHHhHhhcCceEEE
Q psy12852 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG---KHLLSLGSGDVIYNCLPM-YHSAGGLIGTIPALILGSSIAI 709 (1102)
Q Consensus 634 ~~~~~~a~ii~TSGSTG~PKgV~~th~~l~~~~~~~---~~~~~~~~~d~~l~~~pl-~~~~~~~~~i~~~l~~G~~lv~ 709 (1102)
..++++++|+|||||||+||||+++|+++.+.+.+. ...++++++|++++.+|+ +|..+ +...+.++..|+ +++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g-~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVG-AINKERALRLGG-MFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHH-HHHHHHHHHTTS-CEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhh-HHHHHHHHHcCC-EEE
Confidence 467899999999999999999999999999888744 356788999999999999 88887 666777799999 667
Q ss_pred eCCCCHh-----------------------HHHHHHhhcccccccccHHHHHHHHhccCC--ccccccceeeeeccCCCH
Q psy12852 710 RTKFSAS-----------------------NYFRDCAKYKCNAGIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRG 764 (1102)
Q Consensus 710 ~~~~~~~-----------------------~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~~--~~~~~l~~~~~~Ge~l~~ 764 (1102)
...+++. .+++.|+++++|++.++|+++..|++.... ....+++.+++|||++++
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 7677777 888899999999999999999999876432 223567888999999999
Q ss_pred HHHHHHH-HHhCcchhhhccccccCCcccccCCCCCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCC
Q psy12852 765 DIWAKFV-KRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843 (1102)
Q Consensus 765 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g 843 (1102)
++.+++. +.||+++++|.||+||+++++...... ++|.+....+.. ..+.+.++|+++|+++ |.|
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~~--~~G~~~~~~~~~-~~~~v~ivD~~~g~~v-----------p~G 311 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLIT--SESQQVIYDSFS-PFITYDVVDSITAQTV-----------EYG 311 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCBC--TTCSSCEEECCT-TTEEEEEECTTTCSBC-----------CTT
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceeccccc--cCCCcccccCCC-CCeEEEEECCCCCcCC-----------CCC
Confidence 9999999 899777999999999998766433211 244431111112 4567778887666554 889
Q ss_pred CCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecC---------ccEEEEccCCCeEEeCc
Q psy12852 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL---------GYLYFKDRTGDTYRWKG 914 (1102)
Q Consensus 844 ~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d---------G~l~~~GR~dd~Iki~G 914 (1102)
++||+++. +.. ...| --.|+|||++++.+. ..+..++|.|+++||+|
T Consensus 312 ~~GEl~vt----~l~------------~~~~--------l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~g 367 (369)
T 3hgu_A 312 ERGNVIVT----HLS------------PWAF--------YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEG 367 (369)
T ss_dssp CEEEEEEE----EEE------------TTEE--------EEEEEEEEEEEEECCSTTCSSCEEEEEEECC----------
T ss_pred CceEEEEE----EcC------------cccc--------cccccCCceEEEecCCCCCcCcccccceeccccCCCceeee
Confidence 99998854 221 0011 124999999998653 24778999999999998
Q ss_pred e
Q psy12852 915 E 915 (1102)
Q Consensus 915 ~ 915 (1102)
.
T Consensus 368 v 368 (369)
T 3hgu_A 368 V 368 (369)
T ss_dssp -
T ss_pred c
Confidence 5
No 37
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=99.93 E-value=9.9e-26 Score=231.53 Aligned_cols=165 Identities=22% Similarity=0.313 Sum_probs=135.2
Q ss_pred cccceeee---hhhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeE
Q psy12852 219 HFKGIILE---LHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQE 295 (1102)
Q Consensus 219 ~~~~~~l~---~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~ 295 (1102)
++.+++.+ .+++.+++.++..++...... ...+++|++|+++|+.|+.||||+|+++.+++.++|+||||||++.
T Consensus 31 ~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~ 108 (201)
T 4b9w_A 31 EFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEE 108 (201)
T ss_dssp EEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEccCCEEE
Confidence 35555552 245566666666655443322 2334789999999999999999999999877789999999999999
Q ss_pred ecCCCcccCCccccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcC--C
Q psy12852 296 IPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDL--D 373 (1102)
Q Consensus 296 v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~--~ 373 (1102)
|+.++||+| +++|.++|+||++|+|+||+|.++.|+++|+++|++++ .++.+.+++.....+ .+.|.|++. .
T Consensus 109 v~~~~l~~l--~~~f~~lP~qA~~c~L~~v~p~~~~w~~ea~~~f~~l~--~~k~l~~~V~~~~~~--~~~V~L~d~~~~ 182 (201)
T 4b9w_A 109 VTTDQLQAI--LPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQACV--VGLKLQARVVEITAN--GVGVELTDLSTP 182 (201)
T ss_dssp ECGGGEEEC--CGGGGSSCBCCEEEEESSEECSSSSCCHHHHHHHHHHH--TTCCEEEEEEEEETT--EEEEEEEECSSS
T ss_pred EEHHHhccC--hHhHcccchhhEEEEEcCEEcCCCCCCHHHHHHHHHHH--CCCEEEEEEEEEeCC--EEEEEEEECCCC
Confidence 999999999 99999999999999999999999999999999999994 457777777776665 356778874 3
Q ss_pred CcccHHHHHHHcCcceee
Q psy12852 374 EELNINKELVALDLAKFS 391 (1102)
Q Consensus 374 ~~~~i~~~Lv~~gla~~~ 391 (1102)
.+++||+.|+++|||.++
T Consensus 183 ~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 183 YPKIISDVLIREQLVLRC 200 (201)
T ss_dssp SCEEHHHHHHHTTSSEEC
T ss_pred CccchHHHHHHCcCeecc
Confidence 468999999999999875
No 38
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=99.93 E-value=8.9e-26 Score=236.23 Aligned_cols=170 Identities=22% Similarity=0.318 Sum_probs=136.2
Q ss_pred cccceeee---hhhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeE
Q psy12852 219 HFKGIILE---LHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQE 295 (1102)
Q Consensus 219 ~~~~~~l~---~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~ 295 (1102)
+|.+++++ .+.+.+++.++..++...... ...+++|++|+++|+.|+.||||+|+++.+++.++|+||||||++.
T Consensus 31 ~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~ 108 (226)
T 4b9x_A 31 EFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKEILPSGNVKVHFVDYGNVEE 108 (226)
T ss_dssp EEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEEECSSSEEEEECTTTCCEEE
T ss_pred EEEEEEcCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEecCCEEE
Confidence 35566552 245566666666655443322 2334789999999999999999999999877789999999999999
Q ss_pred ecCCCcccCCccccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcC--C
Q psy12852 296 IPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDL--D 373 (1102)
Q Consensus 296 v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~--~ 373 (1102)
|+.++||+| ++.|.++|+||++|+|+||+|.++.|+++|+.+|+++ ..++.+.+++.....+. +.|.|++. .
T Consensus 109 v~~~~l~~l--~~~f~~lP~qA~~c~L~~v~p~~~~w~~ea~~~f~~l--~~~k~l~~~V~~~~~~~--~~V~L~d~~~~ 182 (226)
T 4b9x_A 109 VTTDQLQAI--LPQFLLLPFQGMQCWLVDIQPPNKHWTKEATARFQAC--VVGLKLQARVVEITANG--VGVELTDLSTP 182 (226)
T ss_dssp EEGGGEECC--CGGGSSSCBCCEEEEESSEECSSSSCCHHHHHHHHHH--HTTCCEEEEEEEECSSC--EEEEEEECSSS
T ss_pred EEHHHhccC--hHHHcccccceEEEEEecEECCCCCCCHHHHHHHHHH--HCCCeEEEEEEEEeCCe--EEEEEEECCCC
Confidence 999999999 9999999999999999999999999999999999999 45577888887766653 56788874 3
Q ss_pred CcccHHHHHHHcCcceeeccccc
Q psy12852 374 EELNINKELVALDLAKFSEDANV 396 (1102)
Q Consensus 374 ~~~~i~~~Lv~~gla~~~~~~~~ 396 (1102)
.+++||+.|+++|||..+.....
T Consensus 183 ~~~~I~~~Lv~~gla~~~~~~~~ 205 (226)
T 4b9x_A 183 YPKIISDVLIREQLVLRCGSPQD 205 (226)
T ss_dssp SCEEHHHHHHHTTSSEECC----
T ss_pred CCccHHHHHHHCCCccccCCccc
Confidence 46899999999999988765543
No 39
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=1.8e-21 Score=204.44 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=126.3
Q ss_pred hhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 230 LMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 230 l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
+.++++++...+....+......+++|++|+++|+.|+.||||+|+++.+ +.+.|+|+||||++.|+.++||+| |+.
T Consensus 29 l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l--~~~ 105 (218)
T 2wac_A 29 LESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAAL--PPA 105 (218)
T ss_dssp HHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEEC--CGG
T ss_pred HHHHHHHHHHHHhhCCCCCCCccCCcCCEEEEEECCCCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccC--Chh
Confidence 55566666554443221111234589999999999999999999999977 689999999999999999999999 899
Q ss_pred ccCCCcceEEEEeeceecCCC-CCCHHHHHHHHHHHhhhceEEEEEEEeeecCcee-EEEEEEcCCCcccHHHHHHHcCc
Q psy12852 310 ISNLPFQAIECYLAGVEPLEG-VWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRR-YAVELFDLDEELNINKELVALDL 387 (1102)
Q Consensus 310 l~~lP~qA~~c~L~~v~p~~~-~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~-~~v~l~~~~~~~~i~~~Lv~~gl 387 (1102)
|..+|+||++|+|+||+|+.+ .|+.+|.++|++++ .++.+.+.+.....+ . ..|.+++.+++.+||+.|+++|+
T Consensus 106 ~~~~p~~a~~~~Lagv~~p~~~~w~~eA~~~l~~lv--~~k~v~~~v~~~d~g--~~~~V~L~~~~~~~~in~~Lv~~G~ 181 (218)
T 2wac_A 106 FSSEKPYATEYALALVALPTDNEDKEEALRAFSEDV--LNHKVQLNVELKVTG--SPNLATLRDPTTKVDFGKQLVAEGL 181 (218)
T ss_dssp GSSSCCSEEEEEETTEECCSSHHHHHHHHHHHHHHH--BTCEEEEEEEECCTT--SCEEEEEECTTTCCBHHHHHHHTTS
T ss_pred hccCCcceeEEEECCEECCCCcchHHHHHHHHHHHh--cCCEEEEEEEEEcCC--ceEEEEEEeCCCCccHHHHHHHCCC
Confidence 999999999999999997754 89999999999994 456777777664422 4 77888886567899999999999
Q ss_pred ceeec
Q psy12852 388 AKFSE 392 (1102)
Q Consensus 388 a~~~~ 392 (1102)
|....
T Consensus 182 A~~~~ 186 (218)
T 2wac_A 182 VLAEQ 186 (218)
T ss_dssp SEECC
T ss_pred ccccc
Confidence 99863
No 40
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=99.83 E-value=9.8e-21 Score=187.89 Aligned_cols=142 Identities=16% Similarity=0.231 Sum_probs=112.8
Q ss_pred hhhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcc
Q psy12852 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRP 307 (1102)
Q Consensus 228 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~ 307 (1102)
..+.++++++...... .+. ...+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||.+. .++||+| |
T Consensus 26 ~~L~~L~~~l~~~~~~-~p~--~~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~--v~~lr~l--~ 98 (169)
T 3ntk_A 26 PALEQMTDKLLDAEQD-LPA--FSDLKEGALCVAQFPEDEVFYRAQIRKVLDDGKCEVHFIDFGNNAV--TQQFRQL--P 98 (169)
T ss_dssp HHHHHHHHHHHHHGGG-CCB--CCCCCTTCEEEEEETTTTEEEEEEEEEECSTTCEEEEETTTTEEEE--ESCEECC--C
T ss_pred HHHHHHHHHHHHHHhc-CCC--CCCCCCCCEEEEEECCCCcEEEEEEEEECCCCEEEEEEEecCCeEE--hhhhhcc--C
Confidence 3455555555443321 111 1356899999999999999999999999877789999999999999 4899999 9
Q ss_pred ccccCCCcceEEEEeeceecCCCCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHH
Q psy12852 308 QLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELV 383 (1102)
Q Consensus 308 ~~l~~lP~qA~~c~L~~v~p~~~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv 383 (1102)
..|..+|+||++|+|+||+|+++ +.+|.++|+++ ..++.+.+.+....++ ....|.|++.+ .+||+.|-
T Consensus 99 ~~f~~lP~qA~~c~L~~v~~~~~--~~ea~~~f~~l--~~~k~l~~~V~~~~~~-~~~~V~L~~~~--~~in~~L~ 167 (169)
T 3ntk_A 99 EELAKPARYSRHCELDASTISKC--DAALLQSFIDT--RFSETFQVEILATKGT-GTHVVRLFYQS--KNISEKLQ 167 (169)
T ss_dssp HHHHSSCCSSEEEEECGGGSCHH--HHHHHHHHHHT--TTTSEEEEEEEEECTT-SCEEEEEEETT--EEHHHHCT
T ss_pred HHHhhCCceeEEEEECCcCCCCC--hHHHHHHHHHH--hCCCeEEEEEEEecCC-CCEEEEEEECC--CCHHHHhh
Confidence 99999999999999999999865 89999999999 5567777888775444 33558888743 58998874
No 41
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=223.39 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=132.0
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.+++.++...+....+......+.+|++|+++|+ |+.||||+|+++.+++.+.|+||||||++.|+.++||+| |.
T Consensus 388 ~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l--~~ 464 (570)
T 3bdl_A 388 QLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL--SP 464 (570)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC--CG
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEEHHHCccC--CH
Confidence 355566666554443221111234689999999999 899999999999876789999999999999999999999 88
Q ss_pred cccCC--CcceEEEEeeceecCC-CCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHc
Q psy12852 309 LISNL--PFQAIECYLAGVEPLE-GVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVAL 385 (1102)
Q Consensus 309 ~l~~l--P~qA~~c~L~~v~p~~-~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~ 385 (1102)
.|..+ |+||++|+|++|+|+. +.|+++|+.+|+++ ..++.+.+++....++ .+.|.|++.+++.|||+.|+++
T Consensus 465 ~f~~l~lP~qA~~c~La~v~pp~~~~w~~ea~~~f~~l--v~~k~l~~~V~~~~~~--~~~V~L~~~~~~~sIn~~Lv~~ 540 (570)
T 3bdl_A 465 AFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRD--IQNTQCLLNVEHLSAG--CPHVTLQFADSKGDVGLGLVKE 540 (570)
T ss_dssp GGSTTTSCCCCEEEEETTEECCSSHHHHHHHHHHHHHH--HTTEEEEEEEEECCSS--SCEEEEEETTTCCBHHHHHHHT
T ss_pred HHhcCCCCcceEEEEECCeEcCCCCCCcHHHHHHHHHH--hCCCEEEEEEEEEeCC--cEEEEEEECCCCccHHHHHHHC
Confidence 99866 9999999999999775 49999999999999 4467787787766544 4778999876789999999999
Q ss_pred CcceeeccccccC
Q psy12852 386 DLAKFSEDANVCL 398 (1102)
Q Consensus 386 gla~~~~~~~~~l 398 (1102)
|||...+.....+
T Consensus 541 G~A~~~~~~~~~~ 553 (570)
T 3bdl_A 541 GLVMVEVRKEKQF 553 (570)
T ss_dssp TSSEECCCCSGGG
T ss_pred CCeEcchhhhhhH
Confidence 9999986655443
No 42
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.81 E-value=8.2e-21 Score=202.56 Aligned_cols=135 Identities=18% Similarity=0.170 Sum_probs=58.7
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccccc--CCCcceEEEEeeceecC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLIS--NLPFQAIECYLAGVEPL 328 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~--~lP~qA~~c~L~~v~p~ 328 (1102)
..+.+|++|+++|+ |+.||||+|+++.+++.+.|+||||||++.|+.++||+| +..|. .+|+||++|+|+||+|+
T Consensus 64 ~~~~~G~~c~a~~~-d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l--~~~~~~~~lp~~a~~~~L~~v~~p 140 (246)
T 2hqx_A 64 YAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL--SPAFSTRVLPAQATEYAFAFIQVP 140 (246)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECC--CGGGSTTTSCCCC-----------
T ss_pred CCCCCCCEEEEEcC-CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcC--CHhHcCCCCchhhhhhhhhceecC
Confidence 34579999999999 899999999999766689999999999999999999999 88887 78999999999999977
Q ss_pred C-CCCCHHHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHcCcceeec
Q psy12852 329 E-GVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSE 392 (1102)
Q Consensus 329 ~-~~Ws~ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~~ 392 (1102)
. ..|..+|..+|.+++ .++.+.+.+..... ....+.+++.+.+.+||+.|+++|+|...+
T Consensus 141 ~~~~~~~eA~~~l~~lv--~~k~v~~~v~~~d~--g~~~v~L~~~~~~~~In~~LV~~GlA~~~~ 201 (246)
T 2hqx_A 141 QDDDARTDAVDSVVRDI--QNTQCLLNVEHLSA--GCPHVTLQFADSKGDVGLGLVKEGLVMVEV 201 (246)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCccchHHHHHHHHHHh--cCCEEEEEEEEecC--CeEEEEEEeCCCCccHHHHHHHCCCEEecc
Confidence 5 489999999999884 44555555543322 235567776556789999999999998875
No 43
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.77 E-value=1e-19 Score=166.29 Aligned_cols=98 Identities=28% Similarity=0.393 Sum_probs=82.6
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.+++.++.+.+..... ....+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||++.|+.++||+| +.
T Consensus 11 ~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l--~~ 86 (110)
T 2diq_A 11 QLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL--RS 86 (110)
T ss_dssp HHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC--CH
T ss_pred HHHHHHHHHHHHHccCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcC--cH
Confidence 355566666555544322 23445899999999999999999999999876789999999999999999999999 88
Q ss_pred cccCCCcceEEEEeeceecCCC
Q psy12852 309 LISNLPFQAIECYLAGVEPLEG 330 (1102)
Q Consensus 309 ~l~~lP~qA~~c~L~~v~p~~~ 330 (1102)
.|..+|+||++|+|++|+|.++
T Consensus 87 ~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 87 DFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp HHHSSCCSSCCSCSSCSCCSCC
T ss_pred HHhCCCcceEEEEECCeEECCC
Confidence 9999999999999999999864
No 44
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=99.73 E-value=1.9e-18 Score=152.98 Aligned_cols=89 Identities=28% Similarity=0.416 Sum_probs=75.4
Q ss_pred hhhhhhhcccccccccCCCCcccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccc
Q psy12852 229 RLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308 (1102)
Q Consensus 229 ~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~ 308 (1102)
++.+++.++.+++....+ ....+++|++|+++|+.|+.||||+|+++.+++.+.|+||||||.+.|+.++||+| +.
T Consensus 6 ~Le~Lm~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l--~~ 81 (94)
T 3fdr_A 6 QLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL--RS 81 (94)
T ss_dssp HHHHHHHHHHHHHTTCCC--CCCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEEC--CG
T ss_pred HHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhc--CH
Confidence 455666777666655432 23456899999999999999999999999876789999999999999999999999 89
Q ss_pred cccCCCcceEEEE
Q psy12852 309 LISNLPFQAIECY 321 (1102)
Q Consensus 309 ~l~~lP~qA~~c~ 321 (1102)
.|.++|+||++|+
T Consensus 82 ~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 82 DFLSLPFQAIECS 94 (94)
T ss_dssp GGGCSCCCCCCC-
T ss_pred HHhcCCcceEEeC
Confidence 9999999999996
No 45
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.57 E-value=1.6e-14 Score=172.88 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=102.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....|+.+.|.++++.+|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 3 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 82 (509)
T 3ivr_A 3 LHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAI 82 (509)
T ss_dssp TTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred CCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCE
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 83 ~vpl~~~~~~~~l~~~l~~~~~~~v 107 (509)
T 3ivr_A 83 LLPVNYRLNADEIAFVLGDGAPSVV 107 (509)
T ss_dssp EEECCTTSCHHHHHHHHHHHCEEEE
T ss_pred EEecCCCCCHHHHHHHHHhcCceEE
Confidence 9999999999999999999999998
No 46
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.56 E-value=1.9e-14 Score=175.50 Aligned_cols=148 Identities=9% Similarity=0.028 Sum_probs=119.0
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
....++.+.|.++++++|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++||++++|++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~ 103 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHH 103 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCE
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceeee-hhhhhhhhhccc----ccccccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIILE-LHRLMKLNKEIG----VDVSKTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l~-~~~l~~l~~~l~----~~~~~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
++|++|.++.+++.+++++++++++- ............ ................+++++++.||++++
T Consensus 104 ~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGST 176 (620)
T 4dg8_A 104 YLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTT 176 (620)
T ss_dssp EEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSCEEEGGGCCCCCCCSSCCCCCTTSEEEEEEEBSSS
T ss_pred EEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCceeeeccCCcCCccccCCCCCCCCeEEEEECCCcc
Confidence 99999999999999999999999882 221111111000 001111111112334678999999998763
No 47
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.53 E-value=6.1e-14 Score=170.14 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=117.9
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.|.++++++|+++|+++.++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 73 ~~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 152 (570)
T 4gr5_A 73 AGACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGY 152 (570)
T ss_dssp CSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEE
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee-ehhhhhhhhhcccc------cccccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL-ELHRLMKLNKEIGV------DVSKTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l-~~~~l~~l~~~l~~------~~~~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
+|+|+.++.+++.+++++++++++ .............. ...............+++++++.||++.+
T Consensus 153 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 226 (570)
T 4gr5_A 153 TMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRLTGTTTLYVEDEAASDAPAGNLATGVGPEDVACVMFTSGST 226 (570)
T ss_dssp EECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSSCSSEEEECCC-------CCCCCCCCCTTSEEEEECCSSCC
T ss_pred EEcCCCChHHHHHHHHHhcCCCEEEecchhhhcccCCcceeeeccccccccccccCCCCCCCCeEEEEECCcCC
Confidence 999999999999999999999998 22222111111100 00000111112334678999999998763
No 48
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.53 E-value=1.1e-13 Score=167.33 Aligned_cols=103 Identities=19% Similarity=0.282 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.++++++|+++|+++.++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+|+.++.+++.+++++++++++
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~l 140 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARML 140 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EeCCCCcHHHHHHHHHhcCCCEE
Confidence 99999999999999999999998
No 49
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.51 E-value=9.7e-14 Score=168.28 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=100.1
Q ss_pred ccccCCCCHH-HHHHHHHhcCCCCcEEEE-----CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q psy12852 118 RMAATNTTLV-SEFKKSVKRRPNAPCYYF-----QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191 (1102)
Q Consensus 118 ~~~~~~~~~~-~~~~~~~~~~p~~~al~~-----~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~ 191 (1102)
|......|+. +.|+++++.+|+++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++
T Consensus 49 ~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 49 ILVPENFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp BCCCSSCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred CCCcccchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 4444456766 999999999999999997 2468999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 192 LGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 192 la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|||+++|++++|+++.++.+++.+++++++++++
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 162 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI 162 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEE
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999988
No 50
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.51 E-value=8.5e-14 Score=166.70 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCe--eeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCC
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDE--TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~--~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~ 199 (1102)
...|+.+.|.++++.+|+++|+++.++ ++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+
T Consensus 14 ~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~ 93 (517)
T 3r44_A 14 KMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGA 93 (517)
T ss_dssp GGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCc
Confidence 346899999999999999999998765 999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccchHHHHhhhhccccceee
Q psy12852 200 ISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|+|+.++.+++.+++++++++++
T Consensus 94 ~~vpl~~~~~~~~l~~~l~~~~~~~v 119 (517)
T 3r44_A 94 VAVPINTRLAAPEVSFILSDSGSKVV 119 (517)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred EEEecCcccCHHHHHHHHHhcCceEE
Confidence 99999999999999999999999988
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.50 E-value=7.6e-14 Score=168.53 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=101.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC--------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD--------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 192 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~--------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~l 192 (1102)
.+..++.+.|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+++||+|+++++|+++|++++|
T Consensus 16 ~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 95 (549)
T 3g7s_A 16 YPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIY 95 (549)
T ss_dssp CCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Confidence 345789999999999999999999876 889999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 193 GAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 193 a~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
||+++|++++|+||.++.+++.+++++++++++
T Consensus 96 A~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~ 128 (549)
T 3g7s_A 96 ALWRVAATPVPINPMYKSFELEHILNDSEATTL 128 (549)
T ss_dssp HHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEE
T ss_pred HHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999999999988
No 52
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.1e-14 Score=117.71 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=61.3
Q ss_pred ccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceE
Q psy12852 250 KEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAI 318 (1102)
Q Consensus 250 ~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~ 318 (1102)
+..++.|+.|+++|+.+++||||+|.++.+++.++|+|+||||.+.|+.++||+| ++.|..++.+|+
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L--~~~l~~~~~~~~ 85 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKL--EENLKTMGRLSL 85 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTTEEEC--CHHHHTCSSCCC
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccccccC--CHHHhhhhhccC
Confidence 3445899999999999999999999999998899999999999999999999999 888988887763
No 53
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.49 E-value=1e-13 Score=166.03 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
+|+.+.|.++++.+|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+.++.+++.+++++++++++
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~ 102 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLL 102 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEE
T ss_pred eCCCCcHHHHHHHHHhcCCCEE
Confidence 9999999999999999999988
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.49 E-value=2.2e-13 Score=162.71 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=98.9
Q ss_pred CCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
.|+.+.|.++++++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47899999999999999999987 8899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+|+.++.+++.+++++++++++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~ 105 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAA 105 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEE
T ss_pred EecCCccChHHHHHHHhhcCCcEE
Confidence 999999999999999999999887
No 55
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.48 E-value=1.2e-13 Score=166.36 Aligned_cols=103 Identities=24% Similarity=0.376 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..++.+.|.++++.+|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 21 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav 100 (536)
T 3ni2_A 21 NLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAI 100 (536)
T ss_dssp SCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCE
Confidence 478999999999999999999985 578999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+|+.++.+++.+++++++++++
T Consensus 101 ~vpl~~~~~~~~l~~~l~~~~~~~~ 125 (536)
T 3ni2_A 101 ITAANPFSTPAELAKHAKASRAKLL 125 (536)
T ss_dssp EEECCTTCCHHHHHHHHHHHTEEEE
T ss_pred EeccCCCCCHHHHHHHHHhcCCEEE
Confidence 9999999999999999999999998
No 56
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.48 E-value=2.3e-13 Score=163.99 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=100.7
Q ss_pred cccCCCCHHHHHHHHHhcCCCCcEEEE----CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHH
Q psy12852 119 MAATNTTLVSEFKKSVKRRPNAPCYYF----QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194 (1102)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~p~~~al~~----~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~ 194 (1102)
+.....++.+.|.++++.+|+++|+++ .++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||
T Consensus 13 ~~~~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 13 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp BCCCCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 334456899999999999999999994 4578999999999999999999999999999999999999999999999
Q ss_pred HhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 195 AKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 195 ~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|++++|+|+.++.+++.+++++++++++
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 9999999999999999999999999999998
No 57
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.48 E-value=1.2e-13 Score=165.76 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=100.1
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEee
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~ 203 (1102)
.|+.+.|.+.++.+|+++|+.+.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|
T Consensus 4 ~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vp 83 (521)
T 3l8c_A 4 KDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIP 83 (521)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHhhhhccccceee
Q psy12852 204 SNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 204 ~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+.++.+++.+++++++++++
T Consensus 84 l~~~~~~~~l~~il~~~~~~~i 105 (521)
T 3l8c_A 84 VDVHSAPERILAIIEIAKPSLI 105 (521)
T ss_dssp EETTSCHHHHHHHHHHSCCSEE
T ss_pred cCccccHHHHHHHHHhCCCCEE
Confidence 9999999999999999999988
No 58
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.48 E-value=1.4e-13 Score=165.90 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=101.4
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.|.++++++|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 28 ~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~ 107 (544)
T 3o83_A 28 IDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVV 107 (544)
T ss_dssp CCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred CCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|+++.++.+++.+++++++++++
T Consensus 108 vpl~~~~~~~~l~~~l~~~~~~~l 131 (544)
T 3o83_A 108 LNALYSHRQYELNAFIKQIQPKLL 131 (544)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEE
T ss_pred ecCCCCCCHHHHHHHHHhcCeeEE
Confidence 999999999999999999999998
No 59
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.47 E-value=2e-14 Score=177.00 Aligned_cols=158 Identities=14% Similarity=0.093 Sum_probs=116.1
Q ss_pred hHHHHHhhhhHHHHhhhcccch---hHHHHHH---hhhhhhHHHHHHH---H-HhhhcccccccCCCC-HHHHHHHHHhc
Q psy12852 68 DCTLVGIVNPSLFFLRLNQFQD---IRVYIIL---LTLPRDVNIIYSL---S-RAILGTKRMAATNTT-LVSEFKKSVKR 136 (1102)
Q Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~---~~~~~d~~~~~~~---~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 136 (1102)
++..+++.+.+|..+|.||..+ -|...+. .+....-..++.. . ......+||.....| +.+.++++++.
T Consensus 15 ~~~~~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~ 94 (663)
T 1ry2_A 15 VPRGSHMGLQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALK 94 (663)
T ss_dssp ---------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHHTT
T ss_pred cccccCCChhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHhcc
Confidence 5666778888999999998762 2332211 1111110000000 0 001114678776665 55677788999
Q ss_pred CCCCcEEEE------CCeeeeHHHHHHHHHHHHHHHH-HCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeeccccch
Q psy12852 137 RPNAPCYYF------QDETWTIKQIDEYSNKIARILQ-DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWL 209 (1102)
Q Consensus 137 ~p~~~al~~------~~~~~Ty~el~~~~~~~a~~L~-~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~~~~~~ 209 (1102)
+|+++|+++ .++++||+||.++++++|++|+ +.|+++||+|+++++|++++++++|||+++|++++|+++.++
T Consensus 95 ~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 95 TPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp CTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 999999998 3478999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccccceee
Q psy12852 210 AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 210 ~~~~~~~l~~~~~~~l 225 (1102)
.+++.+++++++++++
T Consensus 175 ~~~l~~~l~~~~~~~l 190 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVV 190 (663)
T ss_dssp HHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhcCCeEE
Confidence 9999999999999988
No 60
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.46 E-value=2.9e-13 Score=162.95 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEE
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~ 201 (1102)
...++.+.|.++++++|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|+++
T Consensus 23 ~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~ 102 (539)
T 1mdb_A 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALP 102 (539)
T ss_dssp CSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEE
T ss_pred cCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEE
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccchHHHHhhhhccccceee
Q psy12852 202 KLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++|.++.+++.+++++++++++
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~v 126 (539)
T 1mdb_A 103 VFALPSHRSSEITYFCEFAEAAAY 126 (539)
T ss_dssp EECCTTCCHHHHHHHHHHTTCSEE
T ss_pred ecCCCCCCHHHHHHHHHhCCCCEE
Confidence 999999999999999999999988
No 61
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=99.45 E-value=2e-13 Score=162.32 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=97.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC---------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD---------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~---------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~ 191 (1102)
....++.+.|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+ +||+|+++++|+++|++++
T Consensus 21 ~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~ 99 (480)
T 3t5a_A 21 MSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAF 99 (480)
T ss_dssp ---CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHH
T ss_pred CCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHH
Confidence 445789999999999999999999855 799999999999999999999996 9999999999999999999
Q ss_pred HHHHhcCCEEeeccc---cchHHHHhhhhccccceee
Q psy12852 192 LGAAKLGVISKLSNV---VWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 192 la~~~~G~v~~~~~~---~~~~~~~~~~l~~~~~~~l 225 (1102)
|||+++|++++|+|+ .++.+++.+++++++++++
T Consensus 100 lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~v 136 (480)
T 3t5a_A 100 LGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAI 136 (480)
T ss_dssp HHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEE
T ss_pred HHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEE
Confidence 999999999999999 7889999999999999988
No 62
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.43 E-value=4.1e-13 Score=162.72 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=97.9
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECC----------eeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQD----------ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~----------~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~ 190 (1102)
....|+.+.|.++++++|+++|+++.+ +++||+||.++++++|++|++.|+ +||+|+++++|+++|+++
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~ 95 (562)
T 3ite_A 17 TSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAI 95 (562)
T ss_dssp -CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHH
Confidence 455789999999999999999998742 789999999999999999999999 799999999999999999
Q ss_pred HHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 191 WLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 191 ~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|||+++|++++|+|+.++.+++.+++++++++++
T Consensus 96 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~ 130 (562)
T 3ite_A 96 IVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMA 130 (562)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999999999999999977
No 63
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.43 E-value=2.6e-13 Score=163.96 Aligned_cols=105 Identities=19% Similarity=0.184 Sum_probs=99.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEE---E--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHH
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYY---F--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~---~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~ 195 (1102)
....|+.+.+.+.++++|+++|++ + .++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+
T Consensus 17 ~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 17 LEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp CCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 445799999999999999999876 3 45789999999999999999999999999999999999999999999999
Q ss_pred hcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 196 KLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 196 ~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|++++|+|+.++.+++.+++++++++++
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 126 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVV 126 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEE
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999988
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.43 E-value=4.8e-13 Score=159.56 Aligned_cols=98 Identities=14% Similarity=0.187 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCCCcEEE---ECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 128 SEFKKSVKRRPNAPCYY---FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 128 ~~~~~~~~~~p~~~al~---~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
+.|.+.++.+|+++|+. +.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 35678889999998887 467899999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+.++.+++.+++++++++++
T Consensus 84 ~~~~~~~~l~~il~~~~~~~v 104 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIV 104 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEE
T ss_pred CCCCCHHHHHHHHHhcCCcEE
Confidence 999999999999999999998
No 65
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=99.43 E-value=9.7e-14 Score=107.85 Aligned_cols=52 Identities=25% Similarity=0.483 Sum_probs=46.7
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
+++|+.|+|+|+.|+.||||+|+++.. ++.+.|+|+||||.+.|+.++||||
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 478999999999999999999999974 4578999999999999999999986
No 66
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.42 E-value=6.3e-13 Score=159.85 Aligned_cols=100 Identities=16% Similarity=0.180 Sum_probs=96.5
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
++.+.+.++++ +|+++|+++.++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++++|+
T Consensus 25 ~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 25 FAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVA 103 (529)
T ss_dssp HHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEec
Confidence 37888888888 99999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+.++.+++.+++++++++++
T Consensus 104 ~~~~~~~~l~~~l~~~~~~~v 124 (529)
T 2v7b_A 104 NTLLTPADYVYMLTHSHARAV 124 (529)
T ss_dssp CTTCCHHHHHHHHHHHTCSEE
T ss_pred CcccCHHHHHHHHhccCCeEE
Confidence 999999999999999999988
No 67
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.42 E-value=6.3e-13 Score=162.75 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=99.1
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
+...++.+.|.++++ |+++|+++.++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 24 ~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~ 101 (617)
T 3rg2_A 24 WQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVA 101 (617)
T ss_dssp CCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCE
T ss_pred CCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeE
Confidence 345789999998887 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+++.++.+++.+++++++++++
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~v 126 (617)
T 3rg2_A 102 PVLALFSHQRSELNAYASQIEPALL 126 (617)
T ss_dssp EEEECTTCCHHHHHHHHHHHCCSEE
T ss_pred EccCCccccHHHHHHHHhhcCceEE
Confidence 9999999999999999999999988
No 68
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=99.42 E-value=1.1e-13 Score=109.50 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=48.8
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
+++|+.|+|+|+.|+.||||+|+++.+ ++.+.|+|+||||.+.|+.++||++
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~ 56 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCT
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCC
Confidence 478999999999999999999999975 4689999999999999999999999
No 69
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.41 E-value=5.1e-13 Score=159.79 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=98.6
Q ss_pred CCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
+|+.+.|.++++.+|+++|+++.++++||+||.++++++|++|++. |.++|++|+++++|+++|++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 4789999999999999999999999999999999999999999885 888999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+|+.++.+++.+++++++++++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~l 103 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELL 103 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEE
T ss_pred ecCCCChHHHHHHHHHhCCCCEE
Confidence 99999999999999999999988
No 70
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.40 E-value=1.6e-12 Score=158.79 Aligned_cols=105 Identities=25% Similarity=0.292 Sum_probs=98.3
Q ss_pred cCCCCHHHHHHHHHhcCCCCcEEEEC----CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHh
Q psy12852 121 ATNTTLVSEFKKSVKRRPNAPCYYFQ----DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196 (1102)
Q Consensus 121 ~~~~~~~~~~~~~~~~~p~~~al~~~----~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~ 196 (1102)
....|+.+.|.+.++.+|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~ 87 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLY 87 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHH
Confidence 34568999999999999999999873 47999999999999999999999999999999999999999999999999
Q ss_pred cCCEEeeccccc---hHHHHhhhhccccceee
Q psy12852 197 LGVISKLSNVVW---LAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 197 ~G~v~~~~~~~~---~~~~~~~~l~~~~~~~l 225 (1102)
+|++++|+|+.+ +.+++.+++++++++++
T Consensus 88 ~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~v 119 (590)
T 3kxw_A 88 AGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIV 119 (590)
T ss_dssp TTCEEEEECCCCSHHHHHHHHHHHHHHCCSEE
T ss_pred hCcEEEEecCCCchHHHHHHHHHHHhCCCCEE
Confidence 999999999987 66899999999999988
No 71
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.40 E-value=1.6e-12 Score=157.26 Aligned_cols=108 Identities=19% Similarity=0.340 Sum_probs=98.0
Q ss_pred ccccCCCC-HHHHHHHHHhc-----CCCCcEEEEC-----CeeeeHHHHHHHHHHHHHHHHHC-CCCCCCEEEEEcCCCh
Q psy12852 118 RMAATNTT-LVSEFKKSVKR-----RPNAPCYYFQ-----DETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRP 185 (1102)
Q Consensus 118 ~~~~~~~~-~~~~~~~~~~~-----~p~~~al~~~-----~~~~Ty~el~~~~~~~a~~L~~~-G~~~gd~Vai~~~n~~ 185 (1102)
|+.....+ +.+.+.++++. +|+++|+++. ++.+||+||.++++++|++|++. |+++||+|+++++|++
T Consensus 31 ~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 31 QEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp CCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 33333344 46888888888 9999999972 37899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 186 EYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 186 e~~~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+|++++|||+++|++++|+|+.++.+++.+++++++++++
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~v 150 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAI 150 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999999999999999999988
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.40 E-value=8.6e-13 Score=170.46 Aligned_cols=103 Identities=19% Similarity=0.296 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEEC--CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQ--DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~--~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
..|+.+.|.++++++|+++|+++. ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 468999999999999999999985 679999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+||.++.+++.+++++++++++
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~v 164 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLI 164 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEE
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999998
No 73
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=99.39 E-value=2.4e-13 Score=113.88 Aligned_cols=58 Identities=21% Similarity=0.361 Sum_probs=52.1
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccCCcccccc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPIHRPQLIS 311 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~ 311 (1102)
.+++|++|+|+|+.|++||||+|+++.. ++.+.|+|+||||.+.|+.++||+| +..+.
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l--~~~ll 67 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV--QTEAW 67 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEEC--CCCCC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeC--CHHHh
Confidence 3589999999999999999999999975 4678999999999999999999999 66653
No 74
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.38 E-value=2.6e-12 Score=170.45 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=117.9
Q ss_pred CCCHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 123 ~~~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
..++.+.|.++++++|+++|+++.++.+||+||.++++++|+.|++.|+++|++|+++++|++++++++||++++|++++
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~~~v 542 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYL 542 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceee-ehhhhhhhhhccc---------ccc-cccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIIL-ELHRLMKLNKEIG---------VDV-SKTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l-~~~~l~~l~~~l~---------~~~-~~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
|++|.++.+++.+++++++++++ ...........+. ... .............+++++++.||++++
T Consensus 543 pldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayiiyTSGST 619 (1304)
T 2vsq_A 543 PVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPYTGTTLFIDDQTRFEEQASDPATAIDPNDPAYIMYTSGTT 619 (1304)
T ss_dssp ECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCCCSEEEESSCGGGGGSCSSCCCCCCCTTSEEEEEEECCSS
T ss_pred EECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCCCCcEEEeccccccccccCCCCCCCCCCCeEEEEeCCCCC
Confidence 99999999999999999999988 2221111110000 000 000111112234678999999998864
No 75
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=99.38 E-value=3.1e-13 Score=108.70 Aligned_cols=54 Identities=19% Similarity=0.381 Sum_probs=49.8
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
..+++|+.|+++|+.|++||||+|+++.+ ++.+.|+|+||||.+.|+.++||+|
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 34589999999999999999999999986 4678999999999999999999999
No 76
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.37 E-value=7.5e-13 Score=158.09 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=93.9
Q ss_pred CHHHHHHHHHhcCCCCcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEeec
Q psy12852 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204 (1102)
Q Consensus 125 ~~~~~~~~~~~~~p~~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~~~ 204 (1102)
|+.+.|.++++++|+++|+++.++++||+||.++++++|++|++. +||+|+++++|+++|++++|||+++|++++|+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 78 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMI 78 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEec
Confidence 566788999999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred cccchHHHHhhhhccccceee
Q psy12852 205 NVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 205 ~~~~~~~~~~~~l~~~~~~~l 225 (1102)
|+.++.+++.+++++++++++
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~l 99 (501)
T 3ipl_A 79 NTRLTPNEMTNQMRSIDVQLI 99 (501)
T ss_dssp CTTSCHHHHHHHHHHTTCCEE
T ss_pred CccCCHHHHHHHHHhcCCCEE
Confidence 999999999999999999988
No 77
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.36 E-value=7e-13 Score=163.10 Aligned_cols=110 Identities=15% Similarity=0.233 Sum_probs=100.6
Q ss_pred ccccccCCCC-HHHHHHHHHhcCCCCcEEEE------CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHH
Q psy12852 116 TKRMAATNTT-LVSEFKKSVKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188 (1102)
Q Consensus 116 ~~~~~~~~~~-~~~~~~~~~~~~p~~~al~~------~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~ 188 (1102)
.+||.....| +.+.|+++++.+|+++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++++
T Consensus 67 ~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v 146 (652)
T 1pg4_A 67 IKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA 146 (652)
T ss_dssp EEESTTCEECHHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH
T ss_pred CEECCCCChhHHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 4677766555 45677788888999999998 2478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEeeccccchHHHHhhhhccccceee
Q psy12852 189 GVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 189 ~~~la~~~~G~v~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
+++|||+++|++++|+++.++.+++.+++++++++++
T Consensus 147 va~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~l 183 (652)
T 1pg4_A 147 VAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLV 183 (652)
T ss_dssp HHHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999999999999988
No 78
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.35 E-value=5.6e-13 Score=122.41 Aligned_cols=95 Identities=12% Similarity=0.144 Sum_probs=64.5
Q ss_pred ccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEE-cCCCcc---CHHHHHHHHHccCCCC-C
Q psy12852 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQV---DLKLLVQGLDANLPAY-A 978 (1102)
Q Consensus 904 GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v-~~~~~~---~~~~l~~~l~~~Lp~~-~ 978 (1102)
.|.||+||++|++|+|.|||++|.+||+|.++++++++++. .++...+++. ...... +.+++.+.+++++..+ .
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~-~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAE-SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEET-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccc-cceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC
Confidence 48999999999999999999999999999999999987765 3333333333 222222 2345555555555433 3
Q ss_pred cceEEEEe--cCccCCCCccchhh
Q psy12852 979 RPLFVRIM--KAIEMTGTFKIKKI 1000 (1102)
Q Consensus 979 ~P~~i~~l--~~lP~t~~GKidr~ 1000 (1102)
+|..+.++ ++||+| +||++|-
T Consensus 80 v~~~v~~v~~~~lPrt-sGKi~Rv 102 (109)
T 3lax_A 80 VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SCCEEEEECTTCSCCC----CCCE
T ss_pred CccceEEEcCCeecCC-CCCcchh
Confidence 55556666 479999 7999883
No 79
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=99.35 E-value=5.5e-13 Score=110.93 Aligned_cols=53 Identities=26% Similarity=0.479 Sum_probs=48.9
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCcccC
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
.+++|+.|+|+|+.|+.||||+|+++..+ +.+.|+|+||||.+.|+.++||+|
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l 70 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 70 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEEC
Confidence 35899999999999999999999999743 578999999999999999999999
No 80
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.34 E-value=2.1e-12 Score=155.67 Aligned_cols=101 Identities=17% Similarity=0.135 Sum_probs=96.5
Q ss_pred CCHHH-HHHHHHhcCCCCcEEEE--CCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCE
Q psy12852 124 TTLVS-EFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200 (1102)
Q Consensus 124 ~~~~~-~~~~~~~~~p~~~al~~--~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v 200 (1102)
.++.+ .+.+.++.+ +++|+++ .++.+||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 47888 888888889 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccchHHHHhhhhccccceee
Q psy12852 201 SKLSNVVWLAQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~~~~~~l 225 (1102)
++|+|+.++.+++.+++++++++++
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~v 128 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIV 128 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEE
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEE
Confidence 9999999999999999999999998
No 81
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.34 E-value=6.8e-13 Score=112.51 Aligned_cols=58 Identities=16% Similarity=0.236 Sum_probs=50.2
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCcccCCcccccc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVPIHRPQLIS 311 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~ 311 (1102)
.+++|+.|+|+|+.|+.||||+|.++.. .+.+.|+|+||||.|.|+.++||++ +..|.
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~--~~~~~ 68 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP--ICEVA 68 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC--C----
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC--Chhhc
Confidence 4589999999999999999999999975 4688999999999999999999999 77664
No 82
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.33 E-value=4.2e-12 Score=154.59 Aligned_cols=104 Identities=16% Similarity=0.212 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHhcCCCCcEEEEC---CeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcC
Q psy12852 122 TNTTLVSEFKKSVKRRPNAPCYYFQ---DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198 (1102)
Q Consensus 122 ~~~~~~~~~~~~~~~~p~~~al~~~---~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G 198 (1102)
...++.+.+.+.++.+|+.+++... ++++||+||.++++++|++|++.|+++||+|+++++|+++|++++|||+++|
T Consensus 19 ~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 98 (576)
T 3gqw_A 19 DFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAG 98 (576)
T ss_dssp CCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 3458999999999999998887642 3789999999999999999999999999999999999999999999999999
Q ss_pred CEEeeccccch-------HHHHhhhhccccceee
Q psy12852 199 VISKLSNVVWL-------AQLLGKKMVHFKGIIL 225 (1102)
Q Consensus 199 ~v~~~~~~~~~-------~~~~~~~l~~~~~~~l 225 (1102)
++++|+++.++ .+++.+++++++++++
T Consensus 99 ~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~i 132 (576)
T 3gqw_A 99 LVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAI 132 (576)
T ss_dssp CEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEE
T ss_pred CeEeecCCCCcccchhhHHHHHHHHHHhcCCCEE
Confidence 99999999998 8999999999999988
No 83
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.32 E-value=1.4e-12 Score=119.52 Aligned_cols=94 Identities=15% Similarity=0.192 Sum_probs=67.0
Q ss_pred ccCCCeEEeCceeechHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCc-----cCHHHHHHHHHccCC-CC
Q psy12852 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQ-----VDLKLLVQGLDANLP-AY 977 (1102)
Q Consensus 904 GR~dd~Iki~G~ri~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~-----~~~~~l~~~l~~~Lp-~~ 977 (1102)
||.||+||++|++|+|.|||++|.+||+|.+++++++++++ +...+.+++..... .+.+++.++|++++. .+
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~--~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~l~~~~ 78 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAE--SNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEI 78 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEET--TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCC--CceEEEEEEEEcCccccchhHHHHHHHHHHHHHHHhh
Confidence 89999999999999999999999999999998888877654 33344444432221 234556666655554 24
Q ss_pred CcceEEEEec--CccCCCCccchhh
Q psy12852 978 ARPLFVRIMK--AIEMTGTFKIKKI 1000 (1102)
Q Consensus 978 ~~P~~i~~l~--~lP~t~~GKidr~ 1000 (1102)
.+|..+.+++ +||+| +||+.|.
T Consensus 79 ~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 79 LVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp SSCCEEEEECTTCSCCC----CCCE
T ss_pred CCceEEEEECCCCccCC-CCceEEE
Confidence 5555788887 89999 9999875
No 84
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-13 Score=122.02 Aligned_cols=66 Identities=8% Similarity=-0.014 Sum_probs=60.8
Q ss_pred HHHHhhhcCCCcchhh-hhhhcCCCCccccccCchhhHHHHHHhhhCC-C-CccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIG-EIKQSDPSRHFYGYADKKESQKKILENVFKP-G-DKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~-~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g-~~l~~~~l~~~pti~~laa 1096 (1102)
...++.|..+|+++|+ . +.|++++|||++|||||+|++|+.+|++. | +.+++.+||++|||++||+
T Consensus 24 ~~~E~~La~iW~~vL~~~-~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l~l~~Lf~~pTl~~lA~ 92 (110)
T 2cq8_A 24 LVTAEAVRSVWQRILPKV-LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQ 92 (110)
T ss_dssp HHHHHHHHHHHHHHCSSC-SCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCcCHHHHHhCCCHHHHHH
Confidence 4467888899999998 6 78999999999999999999999999986 8 9999999999999999986
No 85
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.18 E-value=8.3e-12 Score=148.82 Aligned_cols=140 Identities=12% Similarity=0.053 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHhcCCC-CcEEEECCeeeeHHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCChhHHHHHHHHHhcCCEEe
Q psy12852 124 TTLVSEFKKSVKRRPN-APCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISK 202 (1102)
Q Consensus 124 ~~~~~~~~~~~~~~p~-~~al~~~~~~~Ty~el~~~~~~~a~~L~~~G~~~gd~Vai~~~n~~e~~~~~la~~~~G~v~~ 202 (1102)
.++.+.+.+.++.+|+ ++|+++.++++||+||.++++++|++|+ .|++|+++++|++++++++||++++|++++
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~v 96 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAAV 96 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEE
Confidence 4667777778888887 9999999999999999999999998774 489999999999999999999999999999
Q ss_pred eccccchHHHHhhhhccccceeeehhh---hhhhhhccccc-cc-ccCCCCcccccCCCceeEEEeCCCCc
Q psy12852 203 LSNVVWLAQLLGKKMVHFKGIILELHR---LMKLNKEIGVD-VS-KTSSRYSKEQCHPGLLCLARSDDKSG 268 (1102)
Q Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~l~~~~---l~~l~~~l~~~-~~-~~~~~~~~~~~~~G~~c~a~ft~d~~ 268 (1102)
|+||.++.+++.+++++++++++-... .......+... .. ............+++++++.||++.+
T Consensus 97 pl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTT 167 (505)
T 3nyq_A 97 PLNPKSGDKELAHILSDSAPSLVLAPPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTT 167 (505)
T ss_dssp EECTTCCHHHHHHHHHHHCCSEEEECTTCCCCGGGTTSEEEECCTTCCCCCCCCCCCTTSEEEEEEECCSS
T ss_pred EcCCCCCHHHHHHHHHHCCCCEEEECCccccchhhccccccccccccccCCCCCCCCCCCeEEEEeCCCCc
Confidence 999999999999999999999982211 11111111000 00 00111112234678889999987753
No 86
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=99.15 E-value=3.5e-12 Score=152.08 Aligned_cols=69 Identities=9% Similarity=0.165 Sum_probs=0.0
Q ss_pred CHHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+.+..|+.|..+|+++|+. +.|+++||||++|||||+|++|+++|++.|+.+++.+||++|||++||+.
T Consensus 42 p~~~~e~~l~~~w~~~l~~-~~i~~~~~ff~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~~~~t~~~la~~ 110 (508)
T 4f6l_B 42 PSNEIEQTFVDVFGEVLKQ-NDVGVDDDFFELGGNSLEAMLVVSHLKRFGHHISMQTLYQYKTVRQIVNY 110 (508)
T ss_dssp ----------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCCCCCChHHcCchHHHHHHHHHHHHHcCCCccHHHHhcCCcHHHHHHH
Confidence 3444688899999999999 78999999999999999999999999988999999999999999999975
No 87
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=99.14 E-value=1.7e-12 Score=114.95 Aligned_cols=67 Identities=12% Similarity=0.140 Sum_probs=62.1
Q ss_pred HHHHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..++.+..+|+++|+. +.+++++|||++|||||+|++|+.+|++. |+.+++.++|++|||++||+
T Consensus 14 ~~~~e~~l~~i~~~vL~~-~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~pTi~~la~ 81 (93)
T 4i4d_A 14 RRALERDIAAIWAETLGR-DSVGPHEDFAALGGNSIHAIXITNRVEELVDAELSIRVLLETRTVAGMTD 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHTC-SCCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHcCCCHHHHHH
Confidence 445678888999999998 88999999999999999999999999987 99999999999999999985
No 88
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=99.09 E-value=3e-12 Score=112.62 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=60.8
Q ss_pred HHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1031 TYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
..++.+..+|+++|+. +.+++++|||++|||||.|++|+.+|++. |+.+++.++|++||+++||+.
T Consensus 14 ~~e~~l~~i~~~vL~~-~~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l~~~~l~~~~Ti~~la~~ 80 (91)
T 1dny_A 14 AVESKLAEIWERVLGV-SGIGILDNFFQIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQY 80 (91)
T ss_dssp HHHHHHHHHHHHHHTC-SSCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence 3677888899999998 78999999999999999999999999876 999999999999999999863
No 89
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=9.3e-10 Score=89.81 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=51.3
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLIS 311 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~ 311 (1102)
..+++|+.|+|+|+ |+.||||+|.++.+++.+.|+|.|| |.+.|+.++||+| |..+.
T Consensus 8 ~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrpl--p~~~k 64 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DCRYYPAKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAM--PEDAK 64 (74)
T ss_dssp CCCCTTCEEEEECS-SSSEEEEEEEEESTTSSEEEEETTS-CEEEECGGGEECC--CGGGT
T ss_pred CCCCCCCEEEEECC-CCCEEEEEEEEECCCCEEEEEEecC-CeEEecHHHCeeC--ChhHh
Confidence 34589999999999 9999999999998777899999999 9999999999999 76543
No 90
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=98.34 E-value=3.3e-10 Score=92.99 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
..+++|+.|+|+|+ |+.||||+|+++..++.+.|+|.| ||.|.|+.++|||+ +.+
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~~~~~y~V~F~D-Gn~E~V~~s~LrPl--~~~ 59 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF--SKD 59 (81)
Confidence 34589999999999 999999999999877789999999 99999999999999 654
No 91
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.73 E-value=5.2e-08 Score=114.09 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhCcchhh-hccccccCCcccccCCC-CCCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCccccccc
Q psy12852 764 GDIWAKFVKRFHVQTII-EFYGATEGNANLVNMDN-TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841 (1102)
Q Consensus 764 ~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~ 841 (1102)
..-..++...+|+..++ ..|++||+-+..-..+. .+...+... .+.. .=..++.+++. .++....+..+.
T Consensus 311 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L--~~~~-~ffEFip~~~~-----~~~~~v~l~eVe 382 (581)
T 4eql_A 311 GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTF--MPNM-SYFEFIPMDGG-----DKNDVVDLEDVK 382 (581)
T ss_dssp GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCCEEE--CTTS-SEEEEEECSTT-----CCSSCEEGGGCC
T ss_pred HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCceee--cCCc-EEEEEEecccc-----CCCcEeCHHHcC
Confidence 34445565656665666 99999996433211111 111222211 1110 01122222321 122334567778
Q ss_pred CCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEec----CccEEEEccCCCeEEeCceee
Q psy12852 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE----LGYLYFKDRTGDTYRWKGENV 917 (1102)
Q Consensus 842 ~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~----dG~l~~~GR~dd~Iki~G~ri 917 (1102)
.|+.+|+++. .. .|.+ -||+||++++.. ..++.|+||.|+++.++|.+|
T Consensus 383 ~G~~YelViT----t~----~GL~-------------------RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl 435 (581)
T 4eql_A 383 LGCTYEPVVT----NF----AGLY-------------------RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKT 435 (581)
T ss_dssp TTCEEEEEEE----CS----SSCC-------------------SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCE
T ss_pred CCceEEEEEe----ec----ccee-------------------eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeEC
Confidence 8999998854 11 1211 199999999986 468999999999999999999
Q ss_pred chHHHHHHHHhcC
Q psy12852 918 STMEVEATISKYL 930 (1102)
Q Consensus 918 ~~~eIE~~l~~~~ 930 (1102)
...+||.+|.+.-
T Consensus 436 ~~~~v~~al~~a~ 448 (581)
T 4eql_A 436 NEEDLFKAVSQAK 448 (581)
T ss_dssp EHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998543
No 92
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.71 E-value=5.2e-07 Score=105.72 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCcchhh-hccccccCCcccccCCC-CCCcccccCCCCCCcCCCeeeEEeecCCCC---CcCCCCCcccc
Q psy12852 764 GDIWAKFVKRFHVQTII-EFYGATEGNANLVNMDN-TEGAVGIIPTLLPTFLHPVAIIQFDLVENQ---PIRDPKTGLCI 838 (1102)
Q Consensus 764 ~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~d~~~g~---~i~~~~~~~~~ 838 (1102)
..-..++...+++..++ ..|++||+-+..-..+. .++..+... .|.. .=..++.+++. +. .-.++..-.+.
T Consensus 316 ~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L--~p~~-~ffEFIP~~~~-~~~~~~~~~~~~v~l~ 391 (609)
T 4b2g_A 316 AQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI--MPNM-AYFEFLPHEHS-SIPLSRDSPPRLVDLA 391 (609)
T ss_dssp GGGHHHHHHHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEE--CTTS-CEEEEEEGGGT-TSCCCSSSCCCCEEGG
T ss_pred HHHHHHHHHHcCCCccccCcccccceeeeeecCCCCCcccCceee--cCCc-EEEEEEecccc-ccccccCCCCccccHh
Confidence 33345555555555565 99999997433222111 111222211 1110 00122222321 00 11122234567
Q ss_pred cccCCCCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEec----CccEEEEccCCCeEEeCc
Q psy12852 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDE----LGYLYFKDRTGDTYRWKG 914 (1102)
Q Consensus 839 ~~~~g~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~----dG~l~~~GR~dd~Iki~G 914 (1102)
.+..|+.+|+++. . ..|+++ ||+||++++.. ..++.|+||.+++++++|
T Consensus 392 eVe~G~~YelViT----t----~~GL~R-------------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~G 444 (609)
T 4b2g_A 392 HVEVGKEYELVIT----T----YAGLYR-------------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDS 444 (609)
T ss_dssp GCCTTCEEEEEEE----C----TTSCCS-------------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSS
T ss_pred HcCCCCeEEEehh----h----hhhhhh-------------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccc
Confidence 7888999998854 1 123322 99999999984 578999999999999999
Q ss_pred eeechHHHHHHHHh
Q psy12852 915 ENVSTMEVEATISK 928 (1102)
Q Consensus 915 ~ri~~~eIE~~l~~ 928 (1102)
.+|...+||.+|.+
T Consensus 445 eki~~~~v~~av~~ 458 (609)
T 4b2g_A 445 DKTDEAELQKAVDN 458 (609)
T ss_dssp CCBCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 99999999999974
No 93
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.59 E-value=1.4e-06 Score=101.80 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=77.7
Q ss_pred HHHHHHHHhCcchhh-hccccccCCcccccCCCC-CCcccccCCCCCCcCCCeeeEEeecCCCCCcCCCCCcccccccCC
Q psy12852 766 IWAKFVKRFHVQTII-EFYGATEGNANLVNMDNT-EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843 (1102)
Q Consensus 766 ~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~d~~~g~~i~~~~~~~~~~~~~g 843 (1102)
-..++.+.+++..++ ..|++||+-+..-..+.. ++..+... .|.. .=..++.+++. +. .++..-.+..+..|
T Consensus 318 Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L--~p~~-~ffEFiP~~~~-~~--~~~~~v~l~eve~G 391 (581)
T 4epl_A 318 YVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAV--IPNL-GYFEFLPVSET-GE--GEEKPVGLTQVKIG 391 (581)
T ss_dssp GHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTCCEEE--CTTS-CEEEEEEC----------CCCEEGGGCCTT
T ss_pred HHHHHHHHcCCCccccCceeccceeeeeecCCCCCccccceee--cCCc-EEEEEEecccc-cC--CCCceeeHHHcCCC
Confidence 335565556666666 999999974333222211 11222211 1110 01122222322 11 12233456788899
Q ss_pred CCcceEEEEeecCCcccccccCCchHHHHHHhhcccCCCCeEEEecceeEEecC----ccEEEEccCCCeEEeCceeech
Q psy12852 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL----GYLYFKDRTGDTYRWKGENVST 919 (1102)
Q Consensus 844 ~~Gel~gei~~~G~~~~~~gY~~~~~t~~~f~~~~~~~g~~~yrTGDl~~~~~d----G~l~~~GR~dd~Iki~G~ri~~ 919 (1102)
+.+|+++. .. .|.+ -||+||++++..- ..+.|+||.|++++++|.++..
T Consensus 392 ~~YelviT----t~----~GL~-------------------RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~ 444 (581)
T 4epl_A 392 EEYEVVIT----NY----AGLY-------------------RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTE 444 (581)
T ss_dssp CEEEEEEE----ST----TSCS-------------------SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCH
T ss_pred CeEEEEEe----ec----ccee-------------------eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCH
Confidence 99998854 11 1211 1999999999753 5799999999999999999999
Q ss_pred HHHHHHHHh
Q psy12852 920 MEVEATISK 928 (1102)
Q Consensus 920 ~eIE~~l~~ 928 (1102)
.+||.+|.+
T Consensus 445 ~~v~~al~~ 453 (581)
T 4epl_A 445 RDLQLSVES 453 (581)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999975
No 94
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=98.57 E-value=4.6e-09 Score=92.02 Aligned_cols=70 Identities=14% Similarity=0.094 Sum_probs=61.8
Q ss_pred cCHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1027 MTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1027 ~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
...+..++.+...|+.+++. .+.++.+++||++|||||.++++...+++. |+.+++.++|++||+++||+
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i~~~~~~~~~ti~~la~ 81 (88)
T 2afd_A 10 ASVEDIQSWLIDQFAQQLDVDPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAK 81 (88)
T ss_dssp SSHHHHHHHHHHHHHHHHTSCGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHH
Confidence 44556777788888899886 367999999999999999999999999876 99999999999999999875
No 95
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=98.54 E-value=4.4e-09 Score=93.59 Aligned_cols=67 Identities=7% Similarity=0.120 Sum_probs=59.1
Q ss_pred HHHHhhhcCCCcchhh-h-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIG-E-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~-~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+..++.+...|+.+|+ . .+.++.+++||++|||||.++++...+++. |+.+++.++|.+||+++||+
T Consensus 19 ~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~ 88 (95)
T 2ju1_A 19 AELVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAG 88 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCChhHHhcCCCHHHHHH
Confidence 3456677788888888 3 468999999999999999999999999876 99999999999999999875
No 96
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=98.49 E-value=5.5e-09 Score=116.91 Aligned_cols=64 Identities=11% Similarity=0.169 Sum_probs=58.9
Q ss_pred HHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.|+.+..+|+++||. +.|+.++|||++|||||+|++|+++|++. |+.+++.++|++|||++||+
T Consensus 12 ~e~~l~~~~~~~l~~-~~i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~~~~~~~~~~t~~~la~ 76 (329)
T 3tej_A 12 SETIIAAAFSSLLGC-DVQDADADFFALGGHXLLAMKLAAQLSRQVARQVTPGQVMVASTVAKLAT 76 (329)
T ss_dssp HHHHHHHHHHHHHTC--CCSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence 577788899999998 77999999999999999999999999887 99999999999999999975
No 97
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=98.49 E-value=5.4e-09 Score=93.87 Aligned_cols=69 Identities=4% Similarity=-0.035 Sum_probs=60.7
Q ss_pred CHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+..++.+...|+.+++. .+.++.+++||++|+|||.++++...+++. |+.+++.++|.+||+++||+
T Consensus 18 ~~~~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l~~~~l~~~~ti~~la~ 88 (99)
T 2liu_A 18 NLSEIKQVLKQQLAEALYTEESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNLKATKLYDYPTLLELSG 88 (99)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHH
Confidence 4555677777888888876 467999999999999999999999999886 99999999999999999875
No 98
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.45 E-value=8.9e-09 Score=123.28 Aligned_cols=65 Identities=9% Similarity=0.181 Sum_probs=60.6
Q ss_pred HHHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1031 TYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..|+.+..+|+++||. +.|+.++|||++|||||+||++++++++. |+.+++.+||++|||++||+
T Consensus 10 ~~e~~l~~iw~~vL~~-~~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~l~~~~i~~~~ti~~la~ 75 (520)
T 2jgp_A 10 VWEARLAQVWEQVLNV-PQVGALDDFFALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAA 75 (520)
T ss_dssp HHHHHHHHHHHHHHTC-SCCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCCCCccHHHhcccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHH
Confidence 3678888899999998 78999999999999999999999999987 99999999999999999975
No 99
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=98.41 E-value=1.6e-08 Score=88.62 Aligned_cols=67 Identities=10% Similarity=-0.047 Sum_probs=58.4
Q ss_pred HHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccce--EEEEeccccccccCC
Q psy12852 1031 TYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFL--SVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1031 ~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~--~~l~~~pti~~laa~ 1097 (1102)
..++.+...|+.+++. .+.++.+++||++|+|||.+++++..+++. |+.++. .++|.+||+++|++.
T Consensus 11 ~~~~~l~~~~~~~l~~~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l~~~~~~l~~~~Tv~~la~~ 81 (89)
T 2kr5_A 11 EKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDF 81 (89)
T ss_dssp HHHHHHHHHHHHHHCCCGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCCCchHHHHHcCCCHHHHHHH
Confidence 3566677778888876 367999999999999999999999999876 999999 999999999998753
No 100
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=98.25 E-value=1e-06 Score=69.54 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=49.5
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
+.++.|+-|+|+| +|+.||.|+|+++.++..+.|.|-| |+++.|...+|+++ +..
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~--~~~ 59 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF--SKD 59 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGGGEEEC--C--
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECCCCeEEEEEeC-CceEEEeHHHcccC--Ccc
Confidence 4568999999999 8999999999999988889999999 99999999999999 543
No 101
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=98.15 E-value=1.9e-06 Score=70.94 Aligned_cols=55 Identities=13% Similarity=0.069 Sum_probs=49.2
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCcccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~ 309 (1102)
..+.+|+-|+|+| .|+.||.|+|+++.++..+.|.|-| |+++.|...+|+++ |..
T Consensus 20 ~~f~vGd~VlArW-~D~~yYPAkI~sV~~~~~YtV~F~D-G~~etvk~~~IKp~--~~~ 74 (85)
T 3qii_A 20 SEFQINEQVLACW-SDCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF--SKD 74 (85)
T ss_dssp -CCCTTCEEEEEC-TTSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGGGEEEC--C--
T ss_pred cccccCCEEEEEe-CCCCEeeEEEEEECCCCeEEEEEeC-CCeEEecHHHcccC--Chh
Confidence 4558999999999 8999999999999988899999999 99999999999999 544
No 102
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.13 E-value=1e-07 Score=98.75 Aligned_cols=88 Identities=6% Similarity=-0.048 Sum_probs=59.0
Q ss_pred ccCCCCccchhhhhhhcCCCCCCCCCceEEEcCCceeecCHHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHH
Q psy12852 989 IEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVRMTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQK 1067 (1102)
Q Consensus 989 lP~t~~GKidr~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~ 1067 (1102)
-|-|.|||.++..-.... ...+..++.+..+|+++|+. .+.|+.+++||++|+|||.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~l~~~~a~~l~~~~~~i~~~~~f~~lG~DSl~~~ 63 (212)
T 2l22_A 4 SHHHHHHSSGLVPRGSHM--------------------VADDECAQFLRQSLAAMLYCEPGQIRDGSRFLELGLDSVIAA 63 (212)
T ss_dssp --------------------------------------CCTTHHHHHHHHHHHHHTTCCTTSCCTTCBHHHHTCCHHHHH
T ss_pred ccccccccCCCCccCCCC--------------------CCHHHHHHHHHHHHHHHHCcCHHHcCCCCCHHHhCCcHHHHH
Confidence 466788888875443221 12233566677788888886 367999999999999999999
Q ss_pred HHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1068 KILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1068 ~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+|+.+|++. |+.++..++|.+||+++||+
T Consensus 64 el~~~l~~~~g~~l~~~~~~~~~Ti~~la~ 93 (212)
T 2l22_A 64 QWIREINKHYQLKIPADGIYTYPVFKAFTQ 93 (212)
T ss_dssp HHHHHHHHHTTCCCCTTHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHcCCCHHHHHH
Confidence 999999865 99999999999999998875
No 103
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=98.03 E-value=2.8e-07 Score=78.29 Aligned_cols=65 Identities=6% Similarity=0.003 Sum_probs=55.2
Q ss_pred HhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1033 EKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++.+..+|+.+++. .+.++++++|| ++|+|||.+++++..+++. |+.++..+++.++|+++|++.
T Consensus 5 ~~~l~~~~~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~l~~~~Tv~~l~~~ 72 (78)
T 1l0i_A 5 EERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDY 72 (78)
T ss_dssp HHHHHHHHHHHHTCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHHH
Confidence 34455566777775 36799999998 9999999999999999875 999999999999999998753
No 104
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=98.02 E-value=5.1e-07 Score=77.58 Aligned_cols=68 Identities=7% Similarity=-0.049 Sum_probs=57.7
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..++.+..+|+.+++. .+.++++++|| ++|+|||.+++|+..+++. |+.++..+++.++|+++|++
T Consensus 5 ~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 75 (82)
T 2cnr_A 5 QEEIVAGLAEIVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCCCHHHHHHcCCHHHHHH
Confidence 344556666777777776 35799999997 9999999999999999875 99999999999999999875
No 105
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=98.00 E-value=3.4e-07 Score=78.42 Aligned_cols=67 Identities=4% Similarity=-0.035 Sum_probs=57.1
Q ss_pred HHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+..++.+..+|+.+++. .+.++++++|| ++|+|||.+++++..++++ |+.++..+++.++|+++|++
T Consensus 5 ~~i~~~l~~ii~~~l~~~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 74 (81)
T 2lol_A 5 DKIEQKVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTVSDVIK 74 (81)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCCCGGGGGGSSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHH
Confidence 34555666677777776 35799999997 9999999999999999875 99999999999999999875
No 106
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=97.99 E-value=3.4e-07 Score=77.60 Aligned_cols=63 Identities=6% Similarity=-0.007 Sum_probs=53.7
Q ss_pred hhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1034 KIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1034 ~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+.+..+|+.+++. .+.++.+++| +++|+|||.+++++..+++. |+.++..+++.++|+++|++
T Consensus 4 ~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i~~~~~~~~~tv~~l~~ 69 (77)
T 2ehs_A 4 ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVIN 69 (77)
T ss_dssp HHHHHHHHHHHCCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHH
T ss_pred HHHHHHHHHHhCCChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCccCHHHHHHcCCHHHHHH
Confidence 3444556666665 3579999999 99999999999999999875 99999999999999999875
No 107
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=97.99 E-value=3.6e-07 Score=78.49 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=55.6
Q ss_pred HHhhhcCCCcchhhhh-h-hcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGEI-K-QSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~-~-~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.++.+..+|+.+++.. + .++++++|+++|+|||.+++|+..+++. |+.++..+++.++|+++|++
T Consensus 5 i~~~l~~i~~~~l~~~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 72 (82)
T 2ava_A 5 TIDKVSDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAAD 72 (82)
T ss_dssp HHHHHHHHHHHHTTCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHH
Confidence 3455666777777762 2 7999999999999999999999999874 99999999999999999875
No 108
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=97.97 E-value=5.2e-07 Score=77.10 Aligned_cols=67 Identities=3% Similarity=-0.110 Sum_probs=57.6
Q ss_pred HHHHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1030 NTYEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1030 ~~~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+..++.+..+|+.+++. .+.++++.+| +++|+|||.+++++..+++. |+.++..+++.++|+++|++
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 73 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVE 73 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHH
Confidence 34455666777788876 3579999999 99999999999999999875 99999999999999999875
No 109
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=97.95 E-value=6.8e-07 Score=92.45 Aligned_cols=69 Identities=10% Similarity=0.071 Sum_probs=59.9
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.+..++.+...|+.+++. .+.++.+++||++|+|||.+++|+..|++. |+.+++.++|++|||++||+.
T Consensus 128 ~~~i~~~l~~~~~~~l~~~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l~~~~l~~~~Ti~~La~~ 198 (212)
T 2l22_A 128 RESIQDYLKQSLGELLFLDPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQLAADAIYTWPTLKSLADE 198 (212)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCCCGGGGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHHH
Confidence 344566777888888886 367999999999999999999999999875 999999999999999999853
No 110
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.5e-06 Score=77.44 Aligned_cols=71 Identities=8% Similarity=-0.079 Sum_probs=60.6
Q ss_pred ecCHHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1026 RMTPNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1026 ~~~~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+++.+..++.+..+|+.+++. .+.|+.+.+|| ++|+|||.+++|+..|+++ |+.++..+++.++|+++|++
T Consensus 10 ~m~~~~i~~~l~~~l~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~ 83 (99)
T 2dnw_A 10 PLTLEGIQDRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVD 83 (99)
T ss_dssp CCCHHHHHHHHHHHHHHCTTSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence 355666777777778888776 46799999997 9999999999999999864 99999999999999999875
No 111
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=97.77 E-value=1.3e-06 Score=75.00 Aligned_cols=62 Identities=8% Similarity=-0.057 Sum_probs=53.4
Q ss_pred hhcCCCcchhhh-hhhcCCCCcccc-ccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1035 IMNDQPGMIIGE-IKQSDPSRHFYG-YADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1035 ~l~~~~~~~l~~-~~~i~~~~~Ff~-lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..+|+++|+. ...|.++.+|++ +|.|||.+++|+.++++. |+.++..++++.+|+++|++
T Consensus 6 ~l~~I~~e~l~~d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i~~~~l~~~~TV~dl~~ 70 (87)
T 2kjs_A 6 ALTPIFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLAD 70 (87)
T ss_dssp HHHHHHHHHHTCSSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHhCCCccccCCCCCcccCCCCChHHHHHHHHHHHHHhCceecHHHHHcCCCHHHHHH
Confidence 355567777776 346888999999 699999999999999876 99999999999999999875
No 112
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=97.68 E-value=1.1e-06 Score=75.33 Aligned_cols=66 Identities=3% Similarity=-0.190 Sum_probs=55.4
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhC-CCCccceEEEEeccccccccCC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFK-PGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~-~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
..+.+..+++.+++. .+.++.+.+| +++|+|||.+++++..+++ +|+.++..+++.++|+++|++.
T Consensus 8 i~~~l~~~l~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~ 76 (81)
T 1f80_D 8 TLERVTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNY 76 (81)
T ss_dssp HHHHHHHHHHHHSSCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCccCHHHHHHCCCHHHHHHH
Confidence 344555566666665 3579999999 9999999999999999986 4999999999999999998864
No 113
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=97.68 E-value=4.7e-07 Score=77.16 Aligned_cols=65 Identities=5% Similarity=-0.055 Sum_probs=55.3
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.++.+..+|+.+++. .+.++++.+| +++|+|||.+++++..+++. |+.++..+++.++|+++|++
T Consensus 5 i~~~l~~~~~~~l~~~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 72 (79)
T 2l3v_A 5 TAERVKKIVVEHLGVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVK 72 (79)
T ss_dssp HHHHHHHHHHHHTCCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHH
T ss_pred HHHHHHHHHHHHhCCCHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHHcCCHHHHHH
Confidence 344555667777775 3579999999 99999999999999999864 99999999999999999975
No 114
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=97.64 E-value=2.4e-06 Score=73.42 Aligned_cols=62 Identities=8% Similarity=-0.083 Sum_probs=51.2
Q ss_pred hcCCCcchhhhh-h-hcC--CCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1036 MNDQPGMIIGEI-K-QSD--PSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1036 l~~~~~~~l~~~-~-~i~--~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+..+|+..++.. . .++ .+.+|+++|+|||.+++|+..+++. |+.++..+++.++|+++|++.
T Consensus 9 l~~~l~~~l~~~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~~ 75 (83)
T 1or5_A 9 LKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDE 75 (83)
T ss_dssp HHHHHHHHSCCCSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHH
T ss_pred HHHHHHHHhCCCcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCccCHHHHhccCCHHHHHHH
Confidence 344555566652 2 577 8999999999999999999999875 999999999999999998753
No 115
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=97.56 E-value=5.8e-06 Score=75.81 Aligned_cols=68 Identities=10% Similarity=-0.022 Sum_probs=57.3
Q ss_pred HHHHHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+...+.+..+|..+++. .+.++.+.+|| ++|+|||.+++|+..|++. |+.++..+++.++|+++|++
T Consensus 5 ~~~i~~~l~~il~~~l~~~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~ 75 (115)
T 1klp_A 5 QEEIIAGIAEIIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVA 75 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHH
Confidence 344556666777777776 35799999997 9999999999999999875 99999999999999998874
No 116
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=97.55 E-value=5.8e-06 Score=70.56 Aligned_cols=65 Identities=2% Similarity=-0.124 Sum_probs=55.6
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..+++..++. .+.++++.+|+ ++|.|||.++.|+.++++. |+.++..+++.++|+++|++
T Consensus 6 i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 73 (81)
T 3gzm_A 6 TFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAID 73 (81)
T ss_dssp HHHHHHHHHHHHHTCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHH
T ss_pred HHHHHHHHHHHHhCcCHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHH
Confidence 445566667777775 46799999997 9999999999999999875 99999999999999999875
No 117
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=97.53 E-value=7.6e-06 Score=88.71 Aligned_cols=49 Identities=8% Similarity=0.022 Sum_probs=46.5
Q ss_pred hhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccC
Q psy12852 1048 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa 1096 (1102)
+.++.++||+++|+||+.+|+|+.++|+.|+.+++.++|++|||+++++
T Consensus 232 ~~i~~~~nL~~lGlDSi~~m~l~~~~~~~g~~~~~~~l~~~ptl~~~~~ 280 (287)
T 2fq1_A 232 DEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAWWK 280 (287)
T ss_dssp SCCCTTSCSGGGTCCTTHHHHHHHHHTTTCTTCCHHHHHTSCSHHHHHH
T ss_pred hhcCCCCCHHHhCccHHHHHHHHHHHHHcCCCCCHHHHHhCccHHHHHH
Confidence 5799999999999999999999999999999999999999999998864
No 118
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=96.65 E-value=1.4e-05 Score=71.32 Aligned_cols=67 Identities=9% Similarity=-0.091 Sum_probs=57.6
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCCC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPPN 1098 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~~ 1098 (1102)
..+.+..+++.+++. .+.|+++.+|.++|.|||.++.|+..|+++ |+.++..+++..+|+++|++..
T Consensus 27 i~~~l~~ila~~l~i~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I 95 (103)
T 2lte_A 27 MEDHLLTVLSVASGVPKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVTGVDDELDLLETVDELFQLV 95 (103)
Confidence 445566677777776 367999999999999999999999999875 9999999999999999998753
No 119
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=97.50 E-value=4.1e-06 Score=73.75 Aligned_cols=48 Identities=4% Similarity=-0.071 Sum_probs=44.8
Q ss_pred hcCCCCccccccCchhhHHHHHHhhhC-CCCccceEEEEeccccccccC
Q psy12852 1049 QSDPSRHFYGYADKKESQKKILENVFK-PGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1049 ~i~~~~~Ff~lGgdSl~a~~l~~~l~~-~g~~l~~~~l~~~pti~~laa 1096 (1102)
.++.+.+|+++|+|||.+++|+.+|++ +|+.++..+++.++|+++|++
T Consensus 27 ~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i~~~~l~~~~Tv~~l~~ 75 (95)
T 1nq4_A 27 GDVEDVAFDALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIE 75 (95)
T ss_dssp SCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHH
T ss_pred cCCCCCChhhhCCCHHHHHHHHHHHHHHHCCccCHHHHHcCCCHHHHHH
Confidence 689999999999999999999999986 599999999999999998875
No 120
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=97.47 E-value=5.8e-06 Score=70.79 Aligned_cols=65 Identities=8% Similarity=0.013 Sum_probs=54.5
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..+++..++. .+.++++.+|| ++|.|||.+++|+..++++ |+.++..+++..+|+++|++
T Consensus 8 i~~~l~~ii~~~l~~~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 75 (82)
T 2qnw_A 8 LLERVKDVVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALS 75 (82)
T ss_dssp HHHHHHHHHHHHHCCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcCCHHHHHHcCCHHHHHH
Confidence 344455566666765 36799999995 9999999999999999875 99999999999999999875
No 121
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=97.38 E-value=1.2e-05 Score=69.19 Aligned_cols=69 Identities=6% Similarity=-0.082 Sum_probs=57.6
Q ss_pred CHHHHHhhhcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1028 TPNTYEKIMNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1028 ~~~~~~~~l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
+.+...+.+..+++..++. .+.++++.+| .++|.|||.+++|+..++++ |+.++..+++..+|+++|++
T Consensus 6 ~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 77 (84)
T 2kwl_A 6 DNDEIFSKVRSIISEQLDKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVN 77 (84)
T ss_dssp THHHHHHHHHHHHHHHHCCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHH
Confidence 3444555666667777775 3689999999 99999999999999999875 99999999999999999875
No 122
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=97.35 E-value=1.6e-05 Score=68.75 Aligned_cols=48 Identities=8% Similarity=-0.167 Sum_probs=44.5
Q ss_pred hcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1049 QSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1049 ~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.++++.+|+++|.|||.+++|+..++++ |+.++..+++..+|+++|++
T Consensus 28 ~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~i~~~~~~~~~Tv~~l~~ 76 (86)
T 1af8_A 28 GDFLDLRFEDIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLD 76 (86)
T ss_dssp TCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHH
T ss_pred cCCCCCChhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHcCCCHHHHHH
Confidence 5789999999999999999999999875 99999999999999998875
No 123
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.29 E-value=0.00042 Score=52.86 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=48.0
Q ss_pred ccccCCCceeEEEeCCCCcEEEeEeeecCCCc-cEEEEEEecCCeeEecCCCcccC
Q psy12852 250 KEQCHPGLLCLARSDDKSGYNRVQVTDTSDSE-LAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 250 ~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
....+.|+.+++++..|+.+|-|+|+++...+ .+.|.|-| |+.+.+.-++||++
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKd-gT~e~L~~kDIKp~ 64 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKD-GTELELKENDIKSG 64 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTT-SCEEEEETTTEECC
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEeccCCceEEEEecC-CCEEEechhccccC
Confidence 34558999999999999999999999998444 46999999 99999999999999
No 124
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=97.26 E-value=1.7e-05 Score=70.99 Aligned_cols=64 Identities=3% Similarity=-0.003 Sum_probs=51.0
Q ss_pred HhhhcCCCcchhhh---hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEE--eccccccccC
Q psy12852 1033 EKIMNDQPGMIIGE---IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAP 1096 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~---~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa 1096 (1102)
++.+..+|..+++. .+.|+.+++|+++|.|||.+++|+..|+++ |+.++..+++ .++|++.|++
T Consensus 24 ~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~i~~~~l~~~~~~tv~~l~~ 93 (105)
T 2jq4_A 24 NATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIED 93 (105)
T ss_dssp HHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHhhhhhcCCHHHHHH
Confidence 33444455555431 368999999999999999999999999875 9999999998 7888888764
No 125
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=97.23 E-value=1.6e-05 Score=68.28 Aligned_cols=57 Identities=5% Similarity=0.036 Sum_probs=47.9
Q ss_pred CCcchhhh--hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1039 QPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1039 ~~~~~l~~--~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+|+. .+.|.++.+|+++|.|||.++.|.++|++. |+.++..+++. +|+.+|+.
T Consensus 14 ~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~lp~~~l~~-~Ti~~La~ 73 (91)
T 2cg5_B 14 AVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQE 73 (91)
T ss_dssp HHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHH
T ss_pred HHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCCCHHHHHh-CCHHHHHH
Confidence 34445554 267999999999999999999999999875 99999999877 69988875
No 126
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=97.21 E-value=1.5e-05 Score=70.33 Aligned_cols=65 Identities=6% Similarity=0.012 Sum_probs=54.5
Q ss_pred HHhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..++++.++. .+.++.+.+|+ ++|.|||.++.|+..|+++ |+.++..+++..+|+++|++
T Consensus 23 i~~~l~~iia~~l~~~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i~~~~l~~~~Tv~~l~~ 90 (97)
T 3ejb_A 23 IEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAID 90 (97)
T ss_dssp HHHHHHHHHHHHSCCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCCCHHHHHhCCCHHHHHH
Confidence 445555566666665 46899999997 9999999999999999864 99999999999999998875
No 127
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.18 E-value=0.00055 Score=52.13 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=47.3
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCc-cEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSE-LAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
...+.|+.++++++.|+.+|-|+|+++.+.+ .+.|.|=| |+.+.+.-++||++
T Consensus 8 ~~~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKd-gT~e~L~~kDIkp~ 61 (66)
T 2l8d_A 8 RKYADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKD-GTELALKESDIRLQ 61 (66)
T ss_dssp SSSCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEECS
T ss_pred eEeecCCEEEEEcCCCccceEEEEEEeccCCceEEEEecC-CCEEeechhccccc
Confidence 3458999999999999999999999998444 46999999 99999999999998
No 128
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=96.73 E-value=0.00013 Score=62.47 Aligned_cols=59 Identities=8% Similarity=-0.042 Sum_probs=48.5
Q ss_pred CCCcchhhh---hhhcCCCCccc-cccC-chhhHHHHHHhhhCC-CCccceEEEEe--ccccccccC
Q psy12852 1038 DQPGMIIGE---IKQSDPSRHFY-GYAD-KKESQKKILENVFKP-GDKYFLSVIIR--NFSLDVMAP 1096 (1102)
Q Consensus 1038 ~~~~~~l~~---~~~i~~~~~Ff-~lGg-dSl~a~~l~~~l~~~-g~~l~~~~l~~--~pti~~laa 1096 (1102)
.+++..++. .+.++++.+|+ ++|+ |||.+++|+..++++ |+.++..+++. .+|++++++
T Consensus 9 ~il~~~l~~~~~~~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~~~~~Tv~~l~~ 75 (83)
T 2amw_A 9 NILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLAL 75 (83)
T ss_dssp HHHHHHTTCGGGGGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHHHHHH
T ss_pred HHHHHHhCCCCccccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeCHHhhhHHhcCCHHHHHH
Confidence 344445553 25799999999 7999 999999999999764 99999999887 899988864
No 129
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=96.65 E-value=0.00011 Score=64.85 Aligned_cols=62 Identities=6% Similarity=-0.040 Sum_probs=51.3
Q ss_pred hhcCCCcchhhh-hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1035 IMNDQPGMIIGE-IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1035 ~l~~~~~~~l~~-~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..+.+..++. .+.+.++.+|.++|.|||.++.|+..|+++ |+.++..++...+|+++|++
T Consensus 21 ~l~~ila~~l~v~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i~~~~l~~~~TV~~L~~ 84 (100)
T 1vku_A 21 KFVEIASEKMGKDLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLID 84 (100)
T ss_dssp HHHHHHHHTTCCCCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHH
T ss_pred HHHHHHHHHHCCCHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHH
Confidence 334444445554 357999999999999999999999999875 99999999999999998875
No 130
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=96.46 E-value=0.00021 Score=61.89 Aligned_cols=65 Identities=3% Similarity=-0.122 Sum_probs=53.5
Q ss_pred HHhhhcCCCcchh---hh-hhhcCCCCcc-ccccCchhhHHHHHHhhhC-CCCccceEEEEeccccccccC
Q psy12852 1032 YEKIMNDQPGMII---GE-IKQSDPSRHF-YGYADKKESQKKILENVFK-PGDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l---~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~-~g~~l~~~~l~~~pti~~laa 1096 (1102)
..+.+..+.+.++ +. .+.++.+.+| -++|.|||.++.|+..+++ +|+.++..++...+|+++|++
T Consensus 9 i~~~v~~~i~~~l~~~~~~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i~~~~~~~~~Tv~~l~~ 79 (88)
T 2l4b_A 9 IKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICR 79 (88)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCcCHHHHHHcCCHHHHHH
Confidence 3444555566666 54 3679999999 5999999999999999986 499999999999999998875
No 131
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=96.38 E-value=0.00052 Score=58.01 Aligned_cols=61 Identities=8% Similarity=-0.018 Sum_probs=49.5
Q ss_pred hcCCCcchhhh-hhhcCCCCcccccc-CchhhHHHHHHhhhCC-CCccceEEEE--eccccccccC
Q psy12852 1036 MNDQPGMIIGE-IKQSDPSRHFYGYA-DKKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAP 1096 (1102)
Q Consensus 1036 l~~~~~~~l~~-~~~i~~~~~Ff~lG-gdSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa 1096 (1102)
+..+++..++. ...+..+.+|+++| .|||.+++|+..|+++ |+.++..++. ..+|++++++
T Consensus 9 i~~il~~~~~~~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~ 74 (80)
T 1dv5_A 9 VLDILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIA 74 (80)
T ss_dssp HHHHHHHHHTSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHH
T ss_pred HHHHHHHHhCCCcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHHhcCCHHHHHH
Confidence 33344455554 24689999999999 9999999999999875 9999999888 8889988765
No 132
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=96.36 E-value=0.00024 Score=63.14 Aligned_cols=58 Identities=17% Similarity=0.020 Sum_probs=45.8
Q ss_pred CCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceEEE-----------EeccccccccC
Q psy12852 1039 QPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLSVI-----------IRNFSLDVMAP 1096 (1102)
Q Consensus 1039 ~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~~l-----------~~~pti~~laa 1096 (1102)
+.+..++. .+.++++.+|+ ++|.|||.++.|+..|++. |+.++..++ |.+||+++|++
T Consensus 11 ii~~~l~~~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~~~~~~~T~~~~Tv~~l~~ 82 (101)
T 2kw2_A 11 IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFVLKNLAA 82 (101)
T ss_dssp HHHHHHCCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHBHHHHHH
T ss_pred HHHHHhCCCHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCccCHHHhcchhhhhhccCCCcCcHHHHHH
Confidence 34444443 36799999995 9999999999999999874 999988763 66777998874
No 133
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=96.35 E-value=0.00024 Score=62.88 Aligned_cols=62 Identities=6% Similarity=-0.049 Sum_probs=51.2
Q ss_pred hcCCCcchhhh-hhhcCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1036 MNDQPGMIIGE-IKQSDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1036 l~~~~~~~l~~-~~~i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
+..+++..++. .+.+.++.+| .++|.|||.++.|+..|+++ |+.++..++...+|+++|++.
T Consensus 31 l~~iiae~l~~~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i~~~~l~~~~Tv~dl~~~ 95 (101)
T 4dxe_H 31 VKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKF 95 (101)
T ss_dssp HHHHHHHTTCCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCBHHHHHHH
T ss_pred HHHHHHHHHCcChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCCCHHHHHcCCCHHHHHHH
Confidence 33344445554 4679999999 89999999999999999864 999999999999999988753
No 134
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=96.04 E-value=0.0011 Score=92.14 Aligned_cols=64 Identities=9% Similarity=0.074 Sum_probs=0.0
Q ss_pred HhhhcCCCcchhhh--hhhcCCCCccccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccCC
Q psy12852 1033 EKIMNDQPGMIIGE--IKQSDPSRHFYGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~--~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa~ 1097 (1102)
++.+...|+++|+. .+.|+++++||++|||||.|++|.+.++++ |..+++.+|+. +|++.||+.
T Consensus 2125 ~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~l~~~~i~~-~t~~~la~~ 2191 (2512)
T 2vz8_A 2125 QKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLSMREVRQ-LSLRKLQEL 2191 (2512)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCcccHHHHHh-hhHHHHHHH
Confidence 45677889999997 256999999999999999999999999876 99999999988 898888764
No 135
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=95.94 E-value=0.0011 Score=57.69 Aligned_cols=49 Identities=6% Similarity=-0.071 Sum_probs=18.1
Q ss_pred hhcCCCCccccccCchhhHHHHHHhhhCC-CCccc---eEEEEeccccccccC
Q psy12852 1048 KQSDPSRHFYGYADKKESQKKILENVFKP-GDKYF---LSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~-g~~l~---~~~l~~~pti~~laa 1096 (1102)
+.++++.+|.++|.|||.++.|+..|++. |+.++ ..++...+|+++|++
T Consensus 30 ~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~~~~~~~~~~~~Tv~~l~~ 82 (92)
T 1fh1_A 30 GEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVE 82 (92)
T ss_dssp ----------------CTTTTHHHHHHHC-----------------CTTTSTH
T ss_pred hhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccCCccHhHHhhcCCHHHHHH
Confidence 37899999999999999999999999865 99999 678999999999875
No 136
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=94.60 E-value=0.0035 Score=56.06 Aligned_cols=68 Identities=10% Similarity=-0.080 Sum_probs=52.3
Q ss_pred HHHHHhhhcCCCcchhhhhhhcCCCCccc------cccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1029 PNTYEKIMNDQPGMIIGEIKQSDPSRHFY------GYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1029 ~~~~~~~l~~~~~~~l~~~~~i~~~~~Ff------~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+...+.+..+.+..++....+..+.+|+ ++|.|||.++.|+..|++. |+.++..++...+|+++|++
T Consensus 17 ~~~i~~~i~~il~e~l~~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i~~~~~~~~~Tv~~l~~ 91 (107)
T 3ce7_A 17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIAD 91 (107)
T ss_dssp HHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCCCHHHHHhcCCHHHHHH
Confidence 33344444444445555436799999996 8899999999999999875 99999999889999988764
No 137
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=94.25 E-value=0.0049 Score=54.81 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=42.7
Q ss_pred hhcCCCCccc-cccC-chhhHHHHHHhhhCC-CCccceEEEE--eccccccccC
Q psy12852 1048 KQSDPSRHFY-GYAD-KKESQKKILENVFKP-GDKYFLSVII--RNFSLDVMAP 1096 (1102)
Q Consensus 1048 ~~i~~~~~Ff-~lGg-dSl~a~~l~~~l~~~-g~~l~~~~l~--~~pti~~laa 1096 (1102)
..+.++.+|+ ++|. |||.++.|+..|+++ |+.++..++. ...|+++|++
T Consensus 44 ~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~I~~eel~~~~~~Tv~~l~~ 97 (105)
T 2lki_A 44 HTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLAL 97 (105)
T ss_dssp GTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSCCCGGGCCGGGGSBHHHHHH
T ss_pred ccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCCcCHHHhhHHhcCCHHHHHH
Confidence 5789999999 5999 999999999999875 9999999865 5788888764
No 138
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A 1mnq_A
Probab=93.69 E-value=0.0067 Score=66.77 Aligned_cols=46 Identities=2% Similarity=-0.159 Sum_probs=38.4
Q ss_pred HHhhhcCCCcchhhhhhhcCCCCccccccCchhhHHHHHHhhhCCCCccceEEEEeccccccccCC
Q psy12852 1032 YEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSVIIRNFSLDVMAPP 1097 (1102)
Q Consensus 1032 ~~~~l~~~~~~~l~~~~~i~~~~~Ff~lGgdSl~a~~l~~~l~~~g~~l~~~~l~~~pti~~laa~ 1097 (1102)
.|+.|..+|+++||. ++ +||||+| +|+++++|+. |++||+++||+.
T Consensus 29 ~E~~la~iw~~vL~~-~~---~d~Ff~l-------~~l~~~~~~~---------f~~pt~~~la~~ 74 (319)
T 2hfk_A 29 GAGMFRALFRQAVED-DR---YGEFLDV-------LAEASAFRPQ---------FASPEACSERLD 74 (319)
T ss_dssp -CCHHHHHHHHHHHT-TC---HHHHHHH-------HHHHHTTSCE---------ECSGGGCCSCCC
T ss_pred hHHHHHHHHHHHHcC-Cc---hHHHHHH-------HHHHHHHHHh---------cCCcchhhcccc
Confidence 566777788888888 44 9999999 9999999875 999999999864
No 139
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=93.45 E-value=0.0074 Score=54.25 Aligned_cols=47 Identities=0% Similarity=-0.169 Sum_probs=42.2
Q ss_pred cCCCCcc-ccccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1050 SDPSRHF-YGYADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1050 i~~~~~F-f~lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
|..+.+| -++|.|||..+.|+..|+++ |+.++..++....|+++|++
T Consensus 45 I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I~~e~l~~~~TV~dlv~ 93 (113)
T 2cgq_A 45 ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYT 93 (113)
T ss_dssp CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHH
T ss_pred CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCcCHHHHHhCCCHHHHHH
Confidence 8899999 58999999999999999875 99999999989999988763
No 140
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=92.44 E-value=0.0082 Score=51.15 Aligned_cols=57 Identities=9% Similarity=-0.062 Sum_probs=46.1
Q ss_pred Ccchhhh-hhhcCCCCcccc-ccCchhhHHHHHHhhhCC-CCccceEEEEeccccccccC
Q psy12852 1040 PGMIIGE-IKQSDPSRHFYG-YADKKESQKKILENVFKP-GDKYFLSVIIRNFSLDVMAP 1096 (1102)
Q Consensus 1040 ~~~~l~~-~~~i~~~~~Ff~-lGgdSl~a~~l~~~l~~~-g~~l~~~~l~~~pti~~laa 1096 (1102)
.+..++. ...+.++.+|.+ +|-|||..+.|+.+++++ |+.++..++.+-.|++++.+
T Consensus 11 l~e~l~~d~~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i~~ed~~~~~Tv~dlv~ 70 (87)
T 2kci_A 11 FRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLAD 70 (87)
T ss_dssp HHHHTTCSCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHH
T ss_pred HHHHhCCCHHHCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHHHhCCCHHHHHH
Confidence 3444454 256889999998 999999999999999875 99999998888888777643
No 141
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=91.93 E-value=1.3 Score=41.66 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceecCC--CCCCHHHHHHHHHH
Q psy12852 266 KSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLE--GVWSQAAYDFLDDF 343 (1102)
Q Consensus 266 d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p~~--~~Ws~ea~~~f~~l 343 (1102)
+-.++.++|..+.+.+.+.|.. | | +-++.+|+||..+. ..|..+|.++++++
T Consensus 6 ~~~~~~~~V~~V~DGDTi~v~~-~-g------------------------~~~~VRL~gIDaPE~~q~~g~~A~~~l~~l 59 (143)
T 4eqp_A 6 KLHKEPATLIKAIDGDTVKLMY-K-G------------------------QPMTFRLLLVDTPEFNEKYGPEASAFTKKM 59 (143)
T ss_dssp -CCEEEEEEEEECSSSEEEEEE-T-T------------------------EEEEEEETTEECCCTTSTTHHHHHHHHHHH
T ss_pred CCceeeEEEEEEECCCEEEEEe-C-C------------------------cEEEEEEEeecCCCcCCchHHHHHHHHHHH
Confidence 3468899999999888886653 1 1 12346677776442 37899999999988
Q ss_pred Hhhh-ceEEEEEEEe--eecCceeEEEEEEcCCCcccHHHHHHHcCcceee
Q psy12852 344 TRLF-ARVVSVKLHG--EETGGRRYAVELFDLDEELNINKELVALDLAKFS 391 (1102)
Q Consensus 344 ~~~~-~~~~~v~~~~--~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~ 391 (1102)
+. .+.+.+.... ..+....+...++. ++.+||..|++.|+|...
T Consensus 60 --l~~g~~V~~~~d~~~~~D~ygR~la~v~~--~g~~vn~~lv~~GlA~v~ 106 (143)
T 4eqp_A 60 --VENAKKDEVEFDKGQRTDKYGRGLAYIYA--DGKMVNEALVRQGLAKVA 106 (143)
T ss_dssp --HHHCSCEEEECCSSCSBCTTSCEEEEEEE--TTEEHHHHHHHTTSSEEC
T ss_pred --HhcCCeEEEEEccccccCCCCCEEEEEEE--CCchHHHHHHHCCCeEEE
Confidence 44 2556665521 12222224444443 357999999999999853
No 142
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=88.29 E-value=0.043 Score=47.43 Aligned_cols=64 Identities=6% Similarity=0.012 Sum_probs=46.3
Q ss_pred HhhhcCCCcchhhh-hhhcCCCCccc-cccCchhhHHHHHHhhhCC-CCccceE-EEEeccccccccC
Q psy12852 1033 EKIMNDQPGMIIGE-IKQSDPSRHFY-GYADKKESQKKILENVFKP-GDKYFLS-VIIRNFSLDVMAP 1096 (1102)
Q Consensus 1033 ~~~l~~~~~~~l~~-~~~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~-g~~l~~~-~l~~~pti~~laa 1096 (1102)
.+.+..+..+.++. .+.|.++.+|+ +||.|||.++.|+..++++ |+.++.. +-|++.|+.+++.
T Consensus 16 ~~~V~~ilaE~lev~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~ipd~~e~~~~~TV~d~vd 83 (102)
T 2l9f_A 16 LELVRHLVAERAELPVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSAVAMPTNFATATVREMAE 83 (102)
T ss_dssp HHHHHHHHHHHTTSCSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCSTTSSCSCCTTCBHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCCCccHHHHHHccHHHHHH
Confidence 34444455556665 46799999976 6999999999999999875 9886543 3356677776653
No 143
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=87.42 E-value=3.1 Score=49.17 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=64.3
Q ss_pred CcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEeeceec------------CCCCCCH
Q psy12852 267 SGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEP------------LEGVWSQ 334 (1102)
Q Consensus 267 ~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~~v~p------------~~~~Ws~ 334 (1102)
+..+.|+|..+.+.+.+.|..-+-|.. ++++|+||.- ....|..
T Consensus 206 ~~~~~~~V~~V~DGDT~~v~~~~~~~~------------------------~~vRL~GIdaPe~~~~~~~~~~~~~~~g~ 261 (570)
T 3bdl_A 206 AGRSEAVVEYVFSGSRLKLYLPKETCL------------------------ITFLLAGIECPRGARNLPGLVQEGEPFSE 261 (570)
T ss_dssp TCEEEEEEEEESSSSEEEEEETTTTEE------------------------EEEEESSEECCCCCEEETTEEECCCTTHH
T ss_pred CCeeeEEEEEEeCCCEEEEEEcCCCcE------------------------EEEEEEEEECCCCCCCCCCCccccChHHH
Confidence 345778888888887776544222322 2344444431 2347999
Q ss_pred HHHHHHHHHHhhhceEEEEEEEeeecCceeEEEEEEcCCCcccHHHHHHHcCcceee
Q psy12852 335 AAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFS 391 (1102)
Q Consensus 335 ea~~~f~~l~~~~~~~~~v~~~~~~~~~~~~~v~l~~~~~~~~i~~~Lv~~gla~~~ 391 (1102)
+|..+++++ +..+.+.+.+.+....+. +...++.. +.+||..|++.|+|...
T Consensus 262 eA~~~l~~~--l~~r~V~~~~~~~D~ygR-~la~v~~~--~~~v~~~Lv~~GlA~~~ 313 (570)
T 3bdl_A 262 EATLFTKEL--VLQREVEVEVESMDKAGN-FIGWLHID--GANLSVLLVEHALSKVH 313 (570)
T ss_dssp HHHHHHHHH--HTTCEEEEEEEEECTTSC-EEEEEEET--TEEHHHHHHHTTSSEEC
T ss_pred HHHHHHHHH--hcCCeEEEEEEeEcCCCC-EEEEEEEC--CEEHHHHHHHcCCcEEE
Confidence 999999998 566778887776544343 44444442 57899999999999886
No 144
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=86.81 E-value=0.78 Score=35.63 Aligned_cols=50 Identities=20% Similarity=0.235 Sum_probs=38.0
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCccc
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVP 303 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~ 303 (1102)
.++.|+.|++.| .|+.+|-|+|.+++.. +.+.|.|-| |....+..++|.+
T Consensus 13 ~f~vGddVLA~w-tDGl~Y~gtI~~V~~~~gtC~V~F~D-~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 13 KFEEGQDVLARW-SDGLFYLGTIKKINILKQSCFIIFED-SSKSWVLWKDIQT 63 (66)
T ss_dssp CSCTTCEEEEEC-TTSCEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEEC
T ss_pred cccCCCEEEEEE-ccCcEEEeEEEEEccCCcEEEEEEcc-CCEEEEEeecccc
Confidence 458999999999 5788999999999864 667788766 3334466666654
No 145
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=84.38 E-value=1.1 Score=40.59 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=40.3
Q ss_pred cccCCCceeEEEeCCCC----cEEEeEeeecCCCccEEEEEEecCC--eeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKS----GYNRVQVTDTSDSELAMILFVDYSD--KQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~----~wyRa~I~~~~~~~~~~V~fvDyGn--~~~v~~~~lr~l 304 (1102)
..+..|+-+-+....+. .|+.|+|+.+.++ .+.|.|.+|+. .|.|+..+||++
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg~-f~~V~y~~~~~~~~EiV~~~rlR~~ 117 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKGD-FYVIEYAACDATYNEIVTLERLRPV 117 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEETT-EEEEEETTC----CEEECGGGEEEC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeCC-EEEEEEcCCCCCcceEEehhheEeC
Confidence 34578998888655444 6999999998654 77899999998 788999999999
No 146
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=82.96 E-value=1.9 Score=37.84 Aligned_cols=61 Identities=18% Similarity=0.246 Sum_probs=47.8
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcc---cCCccccccCCCcceEEEEee
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLV---PIHRPQLISNLPFQAIECYLA 323 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr---~l~~~~~l~~lP~qA~~c~L~ 323 (1102)
..|.-|+|++++++.||-++|++...++.+.|.|=| |....|..+++- +| | .-+++.|...
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~~~~ky~V~FdD-g~~~~v~~k~iiv~d~i--p------~g~~V~A~te 69 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDD-GYECDVLGKDILLCDPI--P------LDTEVTALSE 69 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEETTEEEEEETT-SCEEEEEGGGEECCSSC--C------TTCEEEEECT
T ss_pred ccceEEEEEeccCCcCcccEEEEeccCCeEEEEEcC-CCeeEeecceEEEeccc--C------CCcEEEEeec
Confidence 468889999998889999999987777789888855 777778777777 66 4 2467777643
No 147
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=81.08 E-value=1.4 Score=40.39 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcc
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLV 302 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr 302 (1102)
..|.-|+|++++++.||.++|.....++.+.|.|=| |+...|...++.
T Consensus 10 ~iG~rVfArWsd~~yyYpG~V~~~~~~~~Y~V~FdD-G~~k~v~~~div 57 (156)
T 1ssf_A 10 FVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDD-GYECDVLGKDIL 57 (156)
T ss_dssp STTCEEEECSSCSSEEEEEEEEECCTTTEEEEECTT-SCEEEEETTTEE
T ss_pred hhccEEEEEcCCCCcccccEEEEeccCCEEEEEEcC-CCeeEeeccceE
Confidence 689999999999999999999998888888887755 888888876655
No 148
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=78.10 E-value=3.4 Score=31.08 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=38.7
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecCCCc-cEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTSDSE-LAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~~~~-~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
+..|+-++++.+ |+.+|=++|+++.... .+.|.|-| |....+..++|..+
T Consensus 4 f~~GedVLarws-DG~fYlGtI~~V~~~~~~clV~F~D-~s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 4 LWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPA 54 (58)
T ss_dssp CCTTCEEEEECT-TSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEEEC
T ss_pred cccCCEEEEEec-CCCEEeEEEEEEecCCCEEEEEEcC-CCeEEEEhHHcccc
Confidence 478999999987 5789999999998554 66777766 45556788877766
No 149
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=76.10 E-value=0.7 Score=53.83 Aligned_cols=56 Identities=11% Similarity=0.022 Sum_probs=28.6
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCcccccccccccCHHHHHHHHHHhhcc
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSK 473 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l~~~~~~~~~~~~~~~ 473 (1102)
.+.|++.+| .++ ++++.++|.++|++++. +|+.++++++++++.++......++.+
T Consensus 431 ~~~y~~~l~-~~~-i~~l~~~~~~~L~~~~~-----~p~~~l~~l~ll~~~~~~~~~~~~~~~ 486 (493)
T 4hvm_A 431 VLDQRRTHP-AGG-GSALLDGLDAAMAQAVA-----DPSAPLPHSTVDTTTQSTVDKDTVDRN 486 (493)
T ss_dssp EEEECC---------CHHHHHHHHHHHHHHH-----CTTSBCCC-------------------
T ss_pred EEEEccccC-HHH-HHHHHHHHHHHHHHHHh-----CCCCccccCCCCCHHHHHHHhhhhccc
Confidence 678999999 777 99999999999999999 999999999999999988776665544
No 150
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=73.07 E-value=4.8 Score=33.89 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=40.0
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCCCc------cEEEEEEecCC--eeEecCCCcccCCcccc
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSDSE------LAMILFVDYSD--KQEIPYEDLVPIHRPQL 309 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~~~------~~~V~fvDyGn--~~~v~~~~lr~l~~~~~ 309 (1102)
.+|..+++.. .++.||+|+|+++...+ .+-|+|.+|-. -|.|+.++|... ...
T Consensus 16 ~~~e~vlc~~-~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~--~~~ 76 (92)
T 2bud_A 16 NPDKIYFIRR-EDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDN--ADD 76 (92)
T ss_dssp CTTSCEEEEC-TTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESC--HHH
T ss_pred CCCCEEEEEe-CCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchh--ccc
Confidence 4576777764 47889999999876332 46788888877 467999999999 655
No 151
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.48 E-value=9.9 Score=28.92 Aligned_cols=51 Identities=20% Similarity=0.247 Sum_probs=37.8
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCcccC
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
.+..|+-++++++ |+.+|=++|.++... ..+.|.|-| +....+..++|.++
T Consensus 7 ~f~eGqdVLarWs-DGlfYlgtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 7 GLTEGQYVLCRWT-DGLYYLGKIKRVSSSKQSCLVTFED-NSKYWVLWKDIQHA 58 (63)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEECCCCSTTSEEEEEETT-SCEEEEEGGGEECC
T ss_pred ceecCCEEEEEec-CCCEEEEEEEEEecCCCEEEEEEcc-CceeEEEeeccccc
Confidence 3578999999987 678999999999854 346666655 23445788888777
No 152
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.16 E-value=5 Score=33.64 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=41.6
Q ss_pred cccCCCceeEEEeC---CCCcEEEeEeeecCCC---ccEEEEEEecCCe--eEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSD---DKSGYNRVQVTDTSDS---ELAMILFVDYSDK--QEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft---~d~~wyRa~I~~~~~~---~~~~V~fvDyGn~--~~v~~~~lr~l 304 (1102)
..+..|+-|.+.+. .++.||.|+|+++... ..+-|+|++|-.. |.|+.++|+.-
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~~~ 69 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLDLK 69 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBCGG
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcccc
Confidence 34578999988773 5788999999988742 3578999999774 56999988643
No 153
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=67.59 E-value=7.1 Score=35.78 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=39.2
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC-----CccEEEEEEecCCe--eEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD-----SELAMILFVDYSDK--QEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~-----~~~~~V~fvDyGn~--~~v~~~~lr~l 304 (1102)
..+..|+.|.+.+. ++.||.|+|+++.. ...+.|+|.+|-.. |.|+.++|..-
T Consensus 11 ~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~~ 70 (133)
T 1wgs_A 11 VTVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLALT 70 (133)
T ss_dssp CCCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCCT
T ss_pred cccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcccc
Confidence 34688999999775 67999999998652 22357888877763 56999988533
No 154
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=65.74 E-value=4.9 Score=32.79 Aligned_cols=53 Identities=8% Similarity=0.178 Sum_probs=39.0
Q ss_pred ccCCCceeEEEeCC--CCcEEEeEeeecCCCc---cEEEEEEecCCe--eEecCCCcccC
Q psy12852 252 QCHPGLLCLARSDD--KSGYNRVQVTDTSDSE---LAMILFVDYSDK--QEIPYEDLVPI 304 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~--d~~wyRa~I~~~~~~~---~~~V~fvDyGn~--~~v~~~~lr~l 304 (1102)
.+..|+.+.+.... ++.||.|+|+++...+ .+.|.|.+|... |.|+.++|...
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~ 64 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWP 64 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECS
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhcccc
Confidence 34789999998763 3689999999886322 347888877763 56888888766
No 155
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.66 E-value=7.6 Score=30.02 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=38.0
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCC-ccEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDS-ELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
..+..|+-++++++ |+.+|-++|.++... ..+.|.|-| +..-.+..++|.++
T Consensus 8 ~~f~eGqdVLarWs-DGlfYlGtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~ 60 (68)
T 2e5p_A 8 PRLWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPA 60 (68)
T ss_dssp CCCCTTCEEEEECT-TSSEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEECC
T ss_pred cccccCCEEEEEec-CCcEEEeEEEEEecCCcEEEEEEcc-CCeeeeeeeccccc
Confidence 34588999999987 578999999999753 345566655 22335888888877
No 156
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=61.66 E-value=22 Score=40.04 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--hhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcC
Q psy12852 508 EAQIDEYSNKIARILQDDGFKKGDVLALMCENR--PEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~--~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~ 585 (1102)
.+.+...+..+++.+...|+.+++++...++-+ ...+..+++.+..|+..+++++. ..+++...+++.++.+++..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P 190 (437)
T 2y27_A 112 AADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGG-QTEKQVQLIQDFRPDIIMVTP 190 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCCSC-CHHHHHHHHHHHCCSEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHhCCCEEEECH
Confidence 577777777777777788999999999988863 33455678889999999987764 678888999999999999887
Q ss_pred cchhHHHH
Q psy12852 586 LYYPEIEA 593 (1102)
Q Consensus 586 ~~~~~~~~ 593 (1102)
.....+..
T Consensus 191 s~~~~l~~ 198 (437)
T 2y27_A 191 SYMLSIAD 198 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76554443
No 157
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=60.51 E-value=9.4 Score=32.35 Aligned_cols=50 Identities=8% Similarity=0.189 Sum_probs=38.4
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC---CccEEEEEEecCCe--eEecCCCcc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD---SELAMILFVDYSDK--QEIPYEDLV 302 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~---~~~~~V~fvDyGn~--~~v~~~~lr 302 (1102)
..+..|+-|.+.. ++.||.|+|+++.. ...+-|+|++|-.. |.|+.++|.
T Consensus 22 ~~~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 22 DDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp TSCCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 3457899998874 68999999998763 23468999998874 568888875
No 158
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=59.12 E-value=25 Score=39.69 Aligned_cols=84 Identities=24% Similarity=0.370 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--hhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcC
Q psy12852 508 EAQIDEYSNKIARILQDDGFKKGDVLALMCENR--PEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~--~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~ 585 (1102)
.+.+...+..++..+...|+.+++++...++-+ ...+..+++.+..|+..+++++. ..+++...+++.++.++...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~P 192 (443)
T 2y4o_A 114 ARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSGG-QTEKQVQLIRDFEPKIILVTP 192 (443)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHCCSEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCCC-CHHHHHHHHHHhCCcEEEECH
Confidence 577777777777777788999999999988864 33455678889999999988765 678888999999999999887
Q ss_pred cchhHHH
Q psy12852 586 LYYPEIE 592 (1102)
Q Consensus 586 ~~~~~~~ 592 (1102)
.....+.
T Consensus 193 s~~~~l~ 199 (443)
T 2y4o_A 193 SYMLNLI 199 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 159
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=57.47 E-value=12 Score=36.14 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.6
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCC--ccEEEEEEecC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDS--ELAMILFVDYS 291 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~--~~~~V~fvDyG 291 (1102)
..+..|+.++|.|....++|||.|.+...+ +.+.|.|-|-.
T Consensus 115 ~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~~~~~y~L~FEdde 157 (180)
T 3mea_A 115 ALFQKEQLVLALYPQTTCFYRALIHAPPQRPQDDYSVLFEDTS 157 (180)
T ss_dssp GSCCTTCEEEEECTTSSEEEEEEEEECCSSTTCCEEEEEBCTT
T ss_pred ccCCCCCEEEEeCCCCceeeEEEEecCCCCCCCcEEEEEcCCC
Confidence 346899999999998899999999987643 57889998875
No 160
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=56.95 E-value=26 Score=39.48 Aligned_cols=85 Identities=22% Similarity=0.314 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCc--hhHHHHHHHHHHcCceEeecCCCCCchhhhhhhhccCceEEEEcC
Q psy12852 508 EAQIDEYSNKIARILQDDGFKKGDVLALMCENR--PEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~--~~~vv~~lA~l~aG~~~vpld~~~p~~~l~~il~~~~~~~vi~~~ 585 (1102)
.+.+...+..+++.+...|+.+++++...++-+ ...+..+++.+..|+..++.++. ..+++...+++.++.+++..+
T Consensus 108 h~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~i~~~~~t~~~~~P 186 (436)
T 3qov_A 108 QHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG-NSKRQIKFISDFKTTALHAIP 186 (436)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC-CHHHHHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC-CHHHHHHHHHHHCCCEEEECH
Confidence 677877788888888888999999999988753 34455678899999999988765 568888899999999999887
Q ss_pred cchhHHHH
Q psy12852 586 LYYPEIEA 593 (1102)
Q Consensus 586 ~~~~~~~~ 593 (1102)
.....+..
T Consensus 187 ~~~~~l~~ 194 (436)
T 3qov_A 187 SYAIRLAE 194 (436)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 161
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=52.13 E-value=17 Score=31.45 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=38.0
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC---CccEEEEEEecCC--eeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD---SELAMILFVDYSD--KQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~---~~~~~V~fvDyGn--~~~v~~~~lr~l 304 (1102)
+.+..|+.|.+.. ++.||.|+|+++.. ...+.|.|.+|.. -|.|+.++|+..
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~ 77 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKY 77 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEES
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccC
Confidence 3458899998875 58899999998862 2245788887766 355777777665
No 162
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=54.04 E-value=3.7 Score=34.29 Aligned_cols=53 Identities=13% Similarity=0.100 Sum_probs=40.1
Q ss_pred ccccCCCceeEEEeCCCCcEEEeEeeecCCC---ccEEEEEEecCCe--eEecCCCcccC
Q psy12852 250 KEQCHPGLLCLARSDDKSGYNRVQVTDTSDS---ELAMILFVDYSDK--QEIPYEDLVPI 304 (1102)
Q Consensus 250 ~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~---~~~~V~fvDyGn~--~~v~~~~lr~l 304 (1102)
.+.+..|+.|.+... +.||.|+|+++... ..+.|+|.+|... |.|+.++|...
T Consensus 10 ~~~~~~Gekv~~~~~--~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~ 67 (85)
T 2lrq_A 10 NTLFVDGERVLCFHG--PLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKY 67 (85)
Confidence 345678999988763 57999999988632 3468999998774 45888888777
No 163
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=45.47 E-value=5.6 Score=46.39 Aligned_cols=42 Identities=12% Similarity=0.055 Sum_probs=39.7
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCCccccccccccc
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALL 458 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~p~~~l~~l~~l 458 (1102)
.+.|++++|+.++ ++++.++|.++|++++. +|+.++++++++
T Consensus 479 ~~~y~~~~~~~~~-i~~l~~~~~~lL~~l~~-----~p~~~l~~l~ll 520 (520)
T 2jgp_A 479 GVEYSTSLFTRET-MERFSRHFLTIAASIVQ-----NPHIRLGEIDML 520 (520)
T ss_dssp EEEEETTTCCHHH-HHHHHHHHHHHHHHHHH-----CTTCBGGGCCCC
T ss_pred EEEEChhhCCHHH-HHHHHHHHHHHHHHHHh-----CccCchhhcCCC
Confidence 7899999999999 99999999999999999 999999999875
No 164
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=44.56 E-value=30 Score=29.37 Aligned_cols=50 Identities=8% Similarity=0.174 Sum_probs=37.8
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC---CccEEEEEEecCC--eeEecCCCcc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD---SELAMILFVDYSD--KQEIPYEDLV 302 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~---~~~~~V~fvDyGn--~~~v~~~~lr 302 (1102)
..+..|+-|.+.. ++.||+|+|+++.. ...+-|.|++|-. -|.|+.++|.
T Consensus 24 ~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 24 DDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 4457899988873 68999999998763 2346788888866 4569998885
No 165
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=44.34 E-value=18 Score=32.16 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=39.0
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccC
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
.+..|+-+.++.. ++.+|+++|+++....-+.|.|-|=-.+..++..+|...
T Consensus 5 ~v~vGq~V~akh~-ngryy~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~ 56 (118)
T 2qqr_A 5 SITAGQKVISKHK-NGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQ 56 (118)
T ss_dssp CCCTTCEEEEECT-TSSEEEEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSS
T ss_pred eeccCCEEEEECC-CCCEEeEEEEEEeeEEEEEEEcCCCCccCCCCHhhcccc
Confidence 4589999999965 678999999998666556777776545566777666666
No 166
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=39.78 E-value=60 Score=25.39 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=36.7
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEecCCeeEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
.....|+-|+++++ |+.+|=+.|++... +.+-|+|-|= ....|..++|+.|
T Consensus 14 ~~~~~geDVL~rw~-DG~fYLGtIVd~~~-~~ClV~FeD~-S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-DGRFYLGTIIDQTS-DQYLIRFDDQ-SEQWCEPDKLRKL 64 (69)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEECS-SCEEEEETTC-CEEEECTTTEECS
T ss_pred cccccCCeEEEEec-CCCEEEEEEEecCC-ceEEEEecCC-cceeeeHHHHHhh
Confidence 45678999999976 57899999987643 3565666552 1234888888877
No 167
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=32.68 E-value=51 Score=29.77 Aligned_cols=40 Identities=18% Similarity=0.413 Sum_probs=28.4
Q ss_pred CCCCcEEEeEeeecCCCccEEEEEEe-cCCeeEecCCCcccC
Q psy12852 264 DDKSGYNRVQVTDTSDSELAMILFVD-YSDKQEIPYEDLVPI 304 (1102)
Q Consensus 264 t~d~~wyRa~I~~~~~~~~~~V~fvD-yGn~~~v~~~~lr~l 304 (1102)
.+.+.||-|.|..+.++ .+.|.|-| .--.+.|+.+++|+-
T Consensus 12 ~~~G~~y~a~V~~v~~d-~~~V~f~n~w~~~~~vp~~~vRlp 52 (128)
T 3h8z_A 12 GSNGAFYKGFVKDVHED-SVTIFFENNWQSERQIPFGDVRLP 52 (128)
T ss_dssp CTTSCEEEEEEEEECSS-EEEEEETTCTTCCEEEEGGGEECC
T ss_pred cCCCCEEEEEEEEEeCC-cEEEEEccccCcceEechhhEEcC
Confidence 45688999999998654 56566632 122467888888887
No 168
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=31.57 E-value=26 Score=35.11 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=47.2
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCC---------Ccc-EEEEEEecCCeeE--ecCCCcccCCcccccc---CC-Ccce
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSD---------SEL-AMILFVDYSDKQE--IPYEDLVPIHRPQLIS---NL-PFQA 317 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~---------~~~-~~V~fvDyGn~~~--v~~~~lr~l~~~~~l~---~l-P~qA 317 (1102)
+.|+.+-++-...+.||.|+|+.+.. ++. +.|.|=||..... +...++||- ..... +| -.|.
T Consensus 4 ki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irpr--ar~~~~~~~l~~g~~ 81 (226)
T 3ask_A 4 KVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRAR--ARTIIKWQDLEVGQV 81 (226)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEEC--CCCBCCGGGCCTTCE
T ss_pred ccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceeccccccccc--ccccCCccccccCcE
Confidence 68999999988899999999998753 222 3677778866444 566677776 32221 22 3366
Q ss_pred EEEEeeceecC
Q psy12852 318 IECYLAGVEPL 328 (1102)
Q Consensus 318 ~~c~L~~v~p~ 328 (1102)
+.+...=..|.
T Consensus 82 vm~nyn~~~~~ 92 (226)
T 3ask_A 82 VMLNYNPDNPK 92 (226)
T ss_dssp EEEEECTTSTT
T ss_pred EEEecccCCcc
Confidence 66654333443
No 169
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=30.01 E-value=39 Score=29.03 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=37.8
Q ss_pred cccCCCceeEEEeCC---CCcEEEeEeeecCCC--------ccEEEEEEecCCe--eEecCCCcccC
Q psy12852 251 EQCHPGLLCLARSDD---KSGYNRVQVTDTSDS--------ELAMILFVDYSDK--QEIPYEDLVPI 304 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~---d~~wyRa~I~~~~~~--------~~~~V~fvDyGn~--~~v~~~~lr~l 304 (1102)
+.+..|+-|++.+.+ +..+|.|+|+++... ..+.|.|..+... |.|+.++|+..
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~ 84 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKD 84 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEEC
T ss_pred CcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccC
Confidence 345889999886632 578999999988631 1346677666553 56888877766
No 170
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=29.74 E-value=1.2e+02 Score=24.33 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=36.3
Q ss_pred cccCCCceeEEEeCCCCcEEEeEeeecCC-CccEEEEEEecCCeeEecCCCccc
Q psy12852 251 EQCHPGLLCLARSDDKSGYNRVQVTDTSD-SELAMILFVDYSDKQEIPYEDLVP 303 (1102)
Q Consensus 251 ~~~~~G~~c~a~ft~d~~wyRa~I~~~~~-~~~~~V~fvDyGn~~~v~~~~lr~ 303 (1102)
..+..|+-++++++ |+.+|=+.|+++.. .+.+.|.|-| |....+..++|..
T Consensus 25 ~~f~eGeDVLarws-DGlfYLGTI~kV~~~~e~ClV~F~D-~S~~W~~~kdi~~ 76 (79)
T 2m0o_A 25 PRLWEGQDVLARWT-DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISP 76 (79)
T ss_dssp CCCCTTCEEEBCCT-TSCCCEEEEEEEETTTTEEEEEETT-SCEEEEETTTBCC
T ss_pred ceeccCCEEEEEec-CCCEEeEEEEEeccCCCEEEEEEcC-CCeEEEEeecccc
Confidence 34578999999976 67899999999874 3346566655 3444577777654
No 171
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=29.52 E-value=63 Score=31.71 Aligned_cols=69 Identities=4% Similarity=-0.058 Sum_probs=43.7
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCC---CccEEEEEEecCCeeEecCCCcccCCccccccCCCcceEEEEee
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSD---SELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLA 323 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~---~~~~~V~fvDyGn~~~v~~~~lr~l~~~~~l~~lP~qA~~c~L~ 323 (1102)
.++.|..++++.+. +.|||++|++|.. ...++|.|-+=|. ..++.+.|---. .+.+..||--+-=|.+.
T Consensus 8 ~l~Vg~~vlg~k~~-~~W~rg~v~~I~~~~~g~~YkVkF~~~g~-~ivs~~hiA~~~-~p~~~~l~vG~RVVA~~ 79 (213)
T 3dlm_A 8 DLIVSMRILGKKRT-KTWHKGTLIAIQTVGPGKKYKVKFDNKGK-SLLSGNHIAYDY-HPPADKLYVGSRVVAKY 79 (213)
T ss_dssp TEETTCEEEEECTT-SBEEEEEEEEEEEETTEEEEEEEESSSCE-EEECGGGEEESS-CCCGGGCCTTCEEEEEE
T ss_pred cEEEccEEEEEecC-CcEEEEEEEEEEECCCCeEEEEEEcCCCC-EEeecceEEEec-CCCccEEeEEEEEEEEe
Confidence 34789999999864 7799999999764 3335777766443 356655444310 33444566666555554
No 172
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=28.92 E-value=40 Score=31.29 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=49.8
Q ss_pred CCCceeEEEeCCCCcEEEeEeeecCC------------------Ccc-EEEEEEecCCeeE--ecCCCcccCCccccc--
Q psy12852 254 HPGLLCLARSDDKSGYNRVQVTDTSD------------------SEL-AMILFVDYSDKQE--IPYEDLVPIHRPQLI-- 310 (1102)
Q Consensus 254 ~~G~~c~a~ft~d~~wyRa~I~~~~~------------------~~~-~~V~fvDyGn~~~--v~~~~lr~l~~~~~l-- 310 (1102)
+.|+++=++-..-+.|+-|+|.++.. ++. +.|.|=||..... ++..++||- ...+
T Consensus 12 KinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpR--ARt~l~ 89 (161)
T 3db3_A 12 KVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRAR--ARTIIK 89 (161)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECC--CCCBCC
T ss_pred EecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccc--eEEecc
Confidence 78999999988889999999998652 222 4888989977554 666788876 3332
Q ss_pred -cCC-CcceEEEEeece-ecC-CCCC
Q psy12852 311 -SNL-PFQAIECYLAGV-EPL-EGVW 332 (1102)
Q Consensus 311 -~~l-P~qA~~c~L~~v-~p~-~~~W 332 (1102)
.+| +.|.+..- +++ .|. .|.|
T Consensus 90 w~~L~vGqvVMvN-YN~d~PkerGfW 114 (161)
T 3db3_A 90 WQDLEVGQVVMLN-YNPDNPKERGFW 114 (161)
T ss_dssp GGGCCTTCEEEEE-ECSSSTTSCCEE
T ss_pred HHHCCcCcEEEEe-cCCCCcccccee
Confidence 222 44555444 333 353 3566
No 173
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=28.72 E-value=47 Score=38.46 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=35.8
Q ss_pred ccccCCCceeEEEeCCCCcEEEeEeeecCCCccEEEEEEec
Q psy12852 250 KEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDY 290 (1102)
Q Consensus 250 ~~~~~~G~~c~a~ft~d~~wyRa~I~~~~~~~~~~V~fvDy 290 (1102)
...+.+|+.+++.|....++|||.|.+....+.+.|.|-|=
T Consensus 455 ~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~~~~~~~f~~~ 495 (522)
T 3mp6_A 455 TKNYPPGTKVLARYPETTTFYPAIVIGTKRDGTCRLRFDGE 495 (522)
T ss_dssp CCCCCTTCEEEEECTTCSEEEEEEEEEECTTSCEEEEETTC
T ss_pred ccCCCCCCEEEEECCCCcceEeEEEecCCCCCeEEEEecCC
Confidence 34568999999999988999999999988777899999874
No 174
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=26.88 E-value=6 Score=44.78 Aligned_cols=39 Identities=10% Similarity=0.125 Sum_probs=36.6
Q ss_pred HhhccCCCcccccccccCchhhHHHHHHHHhhccCCC---cccccccc
Q psy12852 411 KLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQD---EEYVIDEA 455 (1102)
Q Consensus 411 ~l~y~~~~~~~~~~i~~l~~~~~~~l~~~~~~~~~~~---p~~~l~~l 455 (1102)
.+.|++++|+.++ ++++.++|.++|++++. + |+.+|+++
T Consensus 377 ~~~y~~~~~~~~~-i~~l~~~~~~~l~~l~~-----~~~~p~~~l~~l 418 (436)
T 1l5a_A 377 DITADLASYPQSH-WQSHCERFPRFFEQLLA-----RFQQVEQDVARL 418 (436)
T ss_dssp EEEEETTTSCHHH-HHHHHHHHHHHHHHHHH-----HHHTTTTCHHHH
T ss_pred EEEeChhhCCHHH-HHHHHHHHHHHHHHHHh-----ccCCCcccHHHH
Confidence 5779999999999 99999999999999999 8 99999998
No 175
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=26.73 E-value=84 Score=27.53 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=40.6
Q ss_pred ccCCCceeEEEeCCCCcEEEeEeeecCC------CccEEEEEEecCCeeEecCCCcccC
Q psy12852 252 QCHPGLLCLARSDDKSGYNRVQVTDTSD------SELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 252 ~~~~G~~c~a~ft~d~~wyRa~I~~~~~------~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
...+||++.++..+ --|.-|+|....+ .+.+.|+|..-.....|+.++|.++
T Consensus 19 ~~~~GdlVwaK~kG-yP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf 76 (110)
T 1ri0_A 19 EYKCGDLVFAKMKG-YPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPY 76 (110)
T ss_dssp SCCTTCEEEEEETT-EEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECH
T ss_pred CCCCCCEEEEEeCC-CCCCCEEEecccHhhcCCCCCEEEEEEecCCCEEEECHHHccch
Confidence 45899999999753 3477999987542 3567899986666778999999999
No 176
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=26.31 E-value=14 Score=42.84 Aligned_cols=50 Identities=6% Similarity=0.119 Sum_probs=0.0
Q ss_pred ccCCCC----ccchhhhhhhcCCCCC---CCCCceEEEcCCceeecCHHHHHhhhcC
Q psy12852 989 IEMTGT----FKIKKIQLQNEGFDPS---QISDDLYVRQGSEFVRMTPNTYEKIMND 1038 (1102)
Q Consensus 989 lP~t~~----GKidr~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1038 (1102)
-|+|.+ ||+||+.|.++..... ......+..+.++.+....++|+++|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~e~~l~~~w~~~l~~ 60 (508)
T 4f6l_B 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRDPSNKVYSEPSNEIEQTFVDVFGEVLKQ 60 (508)
T ss_dssp ---------------------------------------------------------
T ss_pred CCcCcCCCCCCcccHHHHhcCChhhhcccCCccCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 366654 5556666655432211 1122335556677788888899988763
No 177
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=26.06 E-value=1.8e+02 Score=28.93 Aligned_cols=81 Identities=16% Similarity=0.040 Sum_probs=46.9
Q ss_pred hhhhHHHHHHhHhhcCceEEEeC-CCCHhHHHHHHhhcccccccc------cHHH--HHHHHhccCCccccccceeeeec
Q psy12852 689 HSAGGLIGTIPALILGSSIAIRT-KFSASNYFRDCAKYKCNAGIY------IGEM--CRYLLASKESEADYSHQVVKMIG 759 (1102)
Q Consensus 689 ~~~~~~~~i~~~l~~G~~lv~~~-~~~~~~l~~~i~~~~vt~~~~------~Ps~--~~~l~~~~~~~~~~~l~~~~~~G 759 (1102)
|+.|...--..--..|-.++... ...++.+.+.+.++++.++.+ ++++ ++.+.+..........-.+++||
T Consensus 105 HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 105 HDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp CCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred hHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 77773333333344566666554 467999999999999987766 3332 22222222211111112357899
Q ss_pred cCCCHHHHHH
Q psy12852 760 VGMRGDIWAK 769 (1102)
Q Consensus 760 e~l~~~~~~~ 769 (1102)
.+++++..+.
T Consensus 185 ~~~~~~~a~~ 194 (215)
T 3ezx_A 185 APVSDKWIEE 194 (215)
T ss_dssp SSCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 9999775544
No 178
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=24.65 E-value=99 Score=33.57 Aligned_cols=80 Identities=10% Similarity=-0.009 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEcCCch--hHHHHHHHHHHcCceEeecCCCCCch------------------
Q psy12852 508 EAQIDEYSNKIARILQDDGFKKGDVLALMCENRP--EYVGVWLGAAKLGVISALINTNLKKQ------------------ 567 (1102)
Q Consensus 508 Y~eL~~~a~~lA~~L~~~gv~~g~~V~i~~~~~~--~~vv~~lA~l~aG~~~vpld~~~p~~------------------ 567 (1102)
.+.+...+...++.+...|+.+++++..++|-+. --+...++++..|+.+++.+ ..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~--~dp~~~~~~~~~~~~~~~~~~~ 190 (369)
T 3hgu_A 113 DAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID--IDPRWVKRSLSEGDTATVRKYT 190 (369)
T ss_dssp HHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC--CCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc--CChHHHHHhhcccchhhhHHHH
Confidence 5667766666666677779999999999988632 22344455589999666644 2233
Q ss_pred -----hhhhhhhccCceEEEEcCcchh
Q psy12852 568 -----PLVHSISTVKSKAIIVSALYYP 589 (1102)
Q Consensus 568 -----~l~~il~~~~~~~vi~~~~~~~ 589 (1102)
++...+++.++.+++..+....
T Consensus 191 ~~~~~~~~~~i~~~~~t~l~~~Ps~~~ 217 (369)
T 3hgu_A 191 HHLVDQVQNTLMNQDIRFLVTTPPVLR 217 (369)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEeCHHHHH
Confidence 5666888999999988765443
No 179
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=21.14 E-value=94 Score=25.29 Aligned_cols=48 Identities=25% Similarity=0.138 Sum_probs=32.1
Q ss_pred hHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCC
Q psy12852 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPA 976 (1102)
Q Consensus 919 ~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~ 976 (1102)
..++++.|.+.|.|.+|..+. |+.-+.+.+.. .+.+++.+.+.+.+..
T Consensus 15 ~~~~~~~l~~~peV~e~~~vt-------G~~D~ll~v~~---~d~~~l~~~i~~~l~~ 62 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVY-------GEYDLIVKVET---DTLKDLDQFITEKIRK 62 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECB-------SSCSEEEEEEE---SSHHHHHHHHHTTGGG
T ss_pred HHHHHHHHhCCCCeeEEEEEc-------ccCCEEEEEEE---CCHHHHHHHHHHHhcc
Confidence 479999999999999999874 33223333322 3567777777655543
No 180
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.01 E-value=1.1e+02 Score=24.56 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=31.9
Q ss_pred hHHHHHHHHhcCCcceeEEEEEEcCCCCCceeEEEEEcCCCccCHHHHHHHHHccCCC
Q psy12852 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPA 976 (1102)
Q Consensus 919 ~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~l~~~v~~~~~~~~~~l~~~l~~~Lp~ 976 (1102)
..++++.|.++|.|.+|..+. |+.-+.+.+.. .+.+++.+.+.+.|..
T Consensus 15 ~~~~~~~l~~~peV~~~~~vt-------G~~d~l~~v~~---~d~~~l~~~~~~~l~~ 62 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVY-------GVYDIVVKVEA---DSMDKLKDFVTNTIRK 62 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECS-------SSCSEEEEEEC---SSHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhCCCCeEEEEEEe-------ccCCEEEEEEE---CCHHHHHHHHHHHhcC
Confidence 378999999999999998873 33333343322 3566777777655543
No 181
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=20.52 E-value=1.6e+02 Score=25.51 Aligned_cols=51 Identities=10% Similarity=0.100 Sum_probs=40.8
Q ss_pred cCCCceeEEEeCCCCcEEEeEeeecC-----------CCccEEEEEEecCCeeEecCCCcccC
Q psy12852 253 CHPGLLCLARSDDKSGYNRVQVTDTS-----------DSELAMILFVDYSDKQEIPYEDLVPI 304 (1102)
Q Consensus 253 ~~~G~~c~a~ft~d~~wyRa~I~~~~-----------~~~~~~V~fvDyGn~~~v~~~~lr~l 304 (1102)
..+|+++-++... .-|.-|+|.... ..+.+.|+|.+-.+...|+.++|+++
T Consensus 9 ~~~GdlVwaK~~g-~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~ 70 (110)
T 2daq_A 9 LHYKQIVWVKLGN-YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPY 70 (110)
T ss_dssp CCSSEEEEEECSS-SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEEC
T ss_pred CCCCCEEEEEeCC-CCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEEEEcHHHCcCc
Confidence 3789999999764 458899998662 22457899988777888999999999
Done!