RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12852
(1102 letters)
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 642 bits (1658), Expect = 0.0
Identities = 225/535 (42%), Positives = 311/535 (58%), Gaps = 15/535 (2%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ +N+ A G KGDV+AL+ ENRPEY+ WLG AKLG + AL+NT +
Sbjct: 66 AELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNTQQRGAV 125
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESI-PDVKLFLLDETKPDLP----NLSDLMKTT 623
L HS++ V +K +IV E R + +L++ D P +L+
Sbjct: 126 LAHSLNLVDAKHLIVGEELVEAFEEARADLARPPRLWVAGGDTLDDPEGYEDLAAAAAGA 185
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
P + + D+ YIYTSGTTGLPKAA+M + + L LL L DV+Y
Sbjct: 186 PTTNPASRSGVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLLRLTPDDVLYC 245
Query: 684 CLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLAS 743
CLP+YH+ GG + L G+++A+R KFSAS ++ D +Y+ A YIGE+CRYLL
Sbjct: 246 CLPLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQ 305
Query: 744 KESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVG 803
D H++ MIG G+R DIW +F +RF + I+EFY A+EGN +N+ N +G VG
Sbjct: 306 PPKPTDRDHRLRLMIGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFINVFNFDGTVG 365
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
+P L HP AI+++D+ +P+RD G CI+ K + G++IG I F G
Sbjct: 366 RVPLWLA---HPYAIVKYDVDTGEPVRDAD-GRCIKVKPGEVGLLIGRI---TDRGPFDG 418
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
Y D + S+KKIL +VFK GD +F +GD+M D G+ F DR GDT+RWKGENV+T EVE
Sbjct: 419 YTDPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVE 478
Query: 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLF 982
+S + E VYGV+V DGRAGM AIV + DL L L LPAYA PLF
Sbjct: 479 NALSGFPGVEEAVVYGVEVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLF 538
Query: 983 VRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSE--FVRMTPNTYEKI 1035
VR++ +E TGTFK +K+ L+ EGFDPS++ D LYV +V +T Y +I
Sbjct: 539 VRLVPELETTGTFKYRKVDLRKEGFDPSKVDDPLYVLDPGSGGYVPLTAELYAEI 593
Score = 94.9 bits (237), Expect = 6e-20
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 95 ILLTLPRDVNIIYSLSRAILGTKRMAA-TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIK 153
+ LPR + + + R + T + + +L F+++ R P+ P F+D++ +
Sbjct: 7 LAARLPRRLPDLPGILRGLKRTALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYA 66
Query: 154 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLL 213
+++ +N+ A G KGDV+AL+ ENRPEY+ WLG AKLG + L N Q
Sbjct: 67 ELNARANRYAHWAAARGVGKGDVVALLMENRPEYLAAWLGLAKLGAVVALLNT----QQR 122
Query: 214 GKKMVH 219
G + H
Sbjct: 123 GAVLAH 128
Score = 56.4 bits (137), Expect = 7e-08
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 1039 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYF 1081
+ G++IG I F GY D + S+KKIL +VFK GD +F
Sbjct: 402 EVGLLIGRI---TDRGPFDGYTDPEASEKKILRDVFKKGDAWF 441
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in mammalian
cells. This family includes FATP4, FATP1, and homologous
proteins. Each FATP has unique patterns of tissue
distribution. FATP4 is mainly expressed in the brain,
testis, colon and kidney. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 474
Score = 605 bits (1561), Expect = 0.0
Identities = 236/501 (47%), Positives = 321/501 (64%), Gaps = 33/501 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++EYSNK+A Q G++ GDV+AL ENR E+V +WLG AK+GV +ALIN+NL+ +
Sbjct: 7 RELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALINSNLRLES 66
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+H I+ K+KA+I NL D + T ++E
Sbjct: 67 LLHCITVSKAKALIF-------------------------------NLLDPLLTQSSTEP 95
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ + D L YIYTSGTTGLPKAA++ + + + + DV+Y+CLP+Y
Sbjct: 96 PSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYYAFGMRPEDVVYDCLPLY 155
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
HSAGG++G AL+ GS++ IR KFSASN++ DC KY C YIGE+CRYLLA SE
Sbjct: 156 HSAGGIMGVGQALLHGSTVVIRKKFSASNFWDDCVKYNCTIVQYIGEICRYLLAQPPSEE 215
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808
+ H V +G G+R IW +FV+RF + I EFYGATEGN++LVN+DN GA G +
Sbjct: 216 EQKHNVRLAVGNGLRPQIWEQFVRRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRI 275
Query: 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868
LP ++P+ +I+ D + IRD GLCI C+ +PG+++G+I Q+DP R F GY ++
Sbjct: 276 LP-SVYPIRLIKVDEDTGELIRDSD-GLCIPCQPGEPGLLVGKIIQNDPLRRFDGYVNEG 333
Query: 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK 928
+ KKI +VFK GD FLSGD++VMDELGYLYFKDRTGDT+RWKGENVST EVE +S
Sbjct: 334 ATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTEVEGILSN 393
Query: 929 YLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKA 988
L + VYGV+V ++GRAGM AIVD +VDL L +LP YARP F+R++
Sbjct: 394 VLGLEDVVVYGVEVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPE 453
Query: 989 IEMTGTFKIKKIQLQNEGFDP 1009
++ TGTFK++K LQ EG+DP
Sbjct: 454 VDKTGTFKLQKTDLQKEGYDP 474
Score = 90.9 bits (226), Expect = 7e-19
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNV 206
D WT ++++EYSNK+A Q G++ GDV+AL ENR E+V +WLG AK+GV + L N
Sbjct: 1 DRHWTFRELNEYSNKVANFFQAQGYRSGDVVALFMENRLEFVALWLGLAKIGVETALIN- 59
Query: 207 VWLAQLLGKKMVH------FKGIILELHRLMKLNKE 236
+ L + ++H K +I L +
Sbjct: 60 ---SNLRLESLLHCITVSKAKALIFNLLDPLLTQSS 92
Score = 66.7 bits (163), Expect = 3e-11
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 1039 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLS 1083
+PG+++G+I Q+DP R F GY ++ + KKI +VFK GD FLS
Sbjct: 309 EPGLLVGKIIQNDPLRRFDGYVNEGATNKKIARDVFKKGDSAFLS 353
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies of
FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty acid
homeostasis.
Length = 535
Score = 491 bits (1267), Expect = e-163
Identities = 213/540 (39%), Positives = 316/540 (58%), Gaps = 27/540 (5%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
A++D+ SN++AR L G K GD +AL+ N P ++ +WLG AKLG +A +NTN++
Sbjct: 7 AEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLNTNIRSG 66
Query: 568 PLVHSISTVKSKAIIVSALYYPEI-EAIRESIPD-----VKLFLL--DETKPDLPNLSDL 619
L+H ++ ++ PE+ EA+ E +P V++F L + +L
Sbjct: 67 SLLHCFRCCGARVLVAD----PELLEAVEEILPALRAMGVRVFYLSHTSPPEGVISLLAK 122
Query: 620 MKTTPASEVKPS--EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS 677
+ V S + + LYIYTSGTTGLPKAA + + +VL + L + +
Sbjct: 123 VDAASDEPVPASLRSGVSIRSTALYIYTSGTTGLPKAARISHLRVLQCSGM-LSLCGVTA 181
Query: 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMC 737
DV+Y LP+YHS+G L+G + + LG+++ ++ KFSAS ++ DC KY YIGE+
Sbjct: 182 DDVVYTTLPLYHSSGALLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYIGELL 241
Query: 738 RYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDN 797
RYL +S+ D H+V IG G+R D+W +F++RF + E Y +TEGN +N
Sbjct: 242 RYLCNQPQSDNDRDHKVRLAIGNGLRPDVWREFLRRFGPIHVWETYASTEGNIGFINYTG 301
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
GAVG + L L P +I++D+ +++P+RD G CI +PG++I +I P
Sbjct: 302 RVGAVGRA-SCLYKLLSPFELIKYDVEKDEPVRDA-QGFCIPVGKGEPGLLISKITSQSP 359
Query: 858 SRHFYGYA-DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
F GYA ++ ++KK+L +VFK GD YF +GD++V D +LYF DRTGDT+RWKGEN
Sbjct: 360 ---FLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGEN 416
Query: 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV-DLKLLVQGLDANLP 975
V+T EV ++ E VYGV V +GRAGM A++ DL+ L Q + LP
Sbjct: 417 VATTEVADILTMVDFIQEVNVYGVTVPGHEGRAGMAAVILKPGTEFDLEKLYQHVREFLP 476
Query: 976 AYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYV---RQGSEFVRMTPNTY 1032
AYARP F+RI ++E+TGTFK +K++L EGF+PS ISD LY R+ S +V +T Y
Sbjct: 477 AYARPRFLRIQDSMEVTGTFKQQKVRLVEEGFNPSIISDPLYFLDNREKS-YVPLTQEIY 535
Score = 54.3 bits (131), Expect = 3e-07
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 147 DETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
ET T ++D+ SN++AR L G K GD +AL+ N P ++ +WLG AKLG + N
Sbjct: 1 GETVTYAEVDKRSNQVARALLAHAGLKPGDTVALLLGNEPAFLWIWLGLAKLGCPTAFLN 60
Score = 50.9 bits (122), Expect = 3e-06
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 1038 DQPGMIIGEIKQSDPSRHFYGYA-DKKESQKKILENVFKPGDKYF 1081
+PG++I +I P F GYA ++ ++KK+L +VFK GD YF
Sbjct: 345 GEPGLLISKITSQSP---FLGYAGPRELTEKKLLRDVFKKGDVYF 386
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 488 bits (1258), Expect = e-163
Identities = 178/373 (47%), Positives = 235/373 (63%), Gaps = 11/373 (2%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
D YIYTSGTTGLPKAAIM + + L G V L L DV+Y CLP+YHS +G
Sbjct: 82 DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGGLGLLKPDDVLYLCLPLYHSNALTVGW 141
Query: 698 IPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKM 757
AL G+S+A+R KFSAS ++ D +Y A Y+GE+CRYLL E D H + K+
Sbjct: 142 SSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDDRDHPLRKI 201
Query: 758 IGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVA 817
IG G+R DIW +F +RF V I+EFYG+TEGN +N+ N GAVG +P +A
Sbjct: 202 IGNGLRPDIWDEFKERFGVPRIVEFYGSTEGNVGFINLFNKPGAVGRLPPA------AIA 255
Query: 818 IIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILEN 877
++++D+ +PIRD G CI+ + G+++GEI +D + F GY D + ++KKIL +
Sbjct: 256 VVKYDVETEEPIRDAN-GFCIKVPPGEVGLLLGEI--TDRNP-FDGYTDDEATEKKILRD 311
Query: 878 VFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTV 937
VFK GD YF +GD++ D GY YF DR GDT+RWKGENVST EVE ++K+ E V
Sbjct: 312 VFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANV 371
Query: 938 YGVKVGDLDGRAGMIAIVDTSNQV-DLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996
YGV+V +GRAGM A+ D + LD LPAYARPLF+R+ A+E TGTFK
Sbjct: 372 YGVEVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFK 431
Query: 997 IKKIQLQNEGFDP 1009
+K L+ EGFDP
Sbjct: 432 YQKTDLRKEGFDP 444
Score = 106 bits (267), Expect = 4e-24
Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ + ++N+ A L+ G KKGDV+AL+ ENRPEY+ WL AKLG ++ALINT + +
Sbjct: 7 AEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALINTTQRGEV 66
Query: 569 LVHSISTVKSKAIIVSALYY 588
L H I+ ++A+IV +Y
Sbjct: 67 LAHCINVSDARAVIVDPAFY 86
Score = 78.4 bits (194), Expect = 5e-15
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
D + + + ++N+ A L+ G KKGDV+AL+ ENRPEY+ WL AKLG ++ L N
Sbjct: 1 DRRLSYAEFNAWANRYAHALRALGVKKGDVVALLMENRPEYLLAWLALAKLGAVAALIN 59
Score = 52.2 bits (126), Expect = 9e-07
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 1023 EFVRMTPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 1082
E +R K+ + G+++GEI +D + F GY D + ++KKIL +VFK GD YF
Sbjct: 265 EPIRDANGFCIKVPPGEVGLLLGEI--TDRNP-FDGYTDDEATEKKILRDVFKKGDAYFN 321
Query: 1083 S 1083
+
Sbjct: 322 T 322
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional
fatty acid transporter/very-long-chain acyl-CoA
synthetase in fungi. Fatty acid transport protein (FATP)
transports long-chain or very-long-chain fatty acids
across the plasma membrane. FATPs also have fatty acid
CoA synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis. Members of this family are fungal FATPs,
including FAT1 from Cochliobolus heterostrophus.
Length = 468
Score = 386 bits (993), Expect = e-123
Identities = 172/511 (33%), Positives = 244/511 (47%), Gaps = 63/511 (12%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ + + A L D + GD +A+ N E+V +WL +G + A IN NL P
Sbjct: 10 ETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAFINYNLSGDP 69
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+H + +K +IV D P
Sbjct: 70 LIHCLKISGAKFVIV-----------------------DPDDP----------------- 89
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ L IYTSGTTGLPK + + L+ H L+L D Y C+P+Y
Sbjct: 90 ----------AAL-IYTSGTTGLPKGCAISWRRTLVTSNPLSHDLNLQFPDRTYTCMPLY 138
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
H +G L G ++ + KFSAS +++D + Y+GE+CRYLLA+ S
Sbjct: 139 HGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPPSPY 198
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM---DNTEGAVGII 805
D H+V G G+R DIW +F +RF+V I EFY ATEG N T GA+G
Sbjct: 199 DRDHKVRVAYGNGLRPDIWERFRERFNVPEIGEFYAATEGVFAFTNHNVGPFTAGAIGFS 258
Query: 806 PTLLPTFLH-PVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
+ FL V +++ D + PIRDPKTG C+R +PG ++G ++ F GY
Sbjct: 259 GLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVR-FKNRELFQGY 317
Query: 865 -ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
++ ++ K+L +VF+ GD ++ +GD++ D G YF DR GDT+RWK ENVST EV
Sbjct: 318 LKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSENVSTGEVA 377
Query: 924 ATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVD-----LKLLVQGLDANLPAYA 978
+ E VYGVKV DGRAG AI + LL + LP+YA
Sbjct: 378 DVLGAIPSVAEANVYGVKVPGYDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYA 437
Query: 979 RPLFVRIMKAIEMTGTFKIKKIQLQNEGFDP 1009
PLF+R+ + + TG K +K L+ EG DP
Sbjct: 438 VPLFLRLTEEVATTGNHKQQKGVLRKEGVDP 468
Score = 54.8 bits (132), Expect = 2e-07
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 145 FQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISKL 203
F+ +TWT + + + A L D + GD +A+ N E+V +WL +G +
Sbjct: 1 FEGKTWTYSETYDLVLRYAHWLHGDRNVQSGDFVAIDTTNSAEFVFLWLALWSIGAVPAF 60
Query: 204 SNVVWLAQLLGKKMVH 219
N L G ++H
Sbjct: 61 INY----NLSGDPLIH 72
Score = 39.7 bits (93), Expect = 0.008
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 13/71 (18%)
Query: 1025 VRMTPNTYEKIMND-----------QPGMIIGEIKQSDPSRHFYGY-ADKKESQKKILEN 1072
V+M P T I + +PG ++G ++ F GY ++ ++ K+L +
Sbjct: 273 VKMDPETDMPIRDPKTGFCVRAPVGEPGEMLGRVR-FKNRELFQGYLKNEDATESKLLRD 331
Query: 1073 VFKPGDKYFLS 1083
VF+ GD ++ +
Sbjct: 332 VFRKGDIWYRT 342
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
[Lipid metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 534
Score = 261 bits (669), Expect = 2e-76
Identities = 129/517 (24%), Positives = 221/517 (42%), Gaps = 48/517 (9%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D +N++A LQ G K GD +A++ N PE++ +L A + G ++ +N L +
Sbjct: 42 RELDRRANRLAAALQALGVKPGDRVAILLPNSPEFLIAFLAALRAGAVAVPLNPRLTPRE 101
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP--NLSDLMKTTPAS 626
L + ++ +K +I SA + +EA+ E++P V + LL D L L P
Sbjct: 102 LAYILNDAGAKVLITSAEFAALLEAVAEALPVVLVVLLVGDADDRLPITLEALAAEGPGP 161
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS--LGSGDVIYNC 684
+ + P+ D +YTSGTTGLPK ++ + +L L L DV+ +
Sbjct: 162 DA-DARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGGGLTPDDVVLSW 220
Query: 685 LPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
LP++H G ++G + L+ G ++ + F KYK + R LL
Sbjct: 221 LPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLD 280
Query: 743 SKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN----- 794
+ E + D ++++ G + ++ +F +RF I+E YG TE + +
Sbjct: 281 NPEKDDDDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDD 340
Query: 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ 854
+ G+VG L V + I DP G + PG +GEI
Sbjct: 341 LLAKPGSVGRP-------LPGVEVR---------IVDPDGGEVL------PGE-VGEIWV 377
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
P+ GY ++ E+ + + D + +GD+ +DE GYLY R D G
Sbjct: 378 RGPNV-MKGYWNRPEATAEAFDE-----DGWLRTGDLGYVDEDGYLYIVGRLKDLIISGG 431
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV---DTSNQVDLKLLVQGLD 971
EN+ E+EA ++++ E V GV G + +V ++ + L L
Sbjct: 432 ENIYPEEIEAVLAEHPAVAEAAVVGVPDERW-GERVVAVVVLKPGGDAELTAEELRAFLR 490
Query: 972 ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFD 1008
L Y P V + + T + KI + L+ E
Sbjct: 491 KRLALYKVPRIVVFVDELPRTASGKIDRRALREEYRA 527
Score = 70.2 bits (172), Expect = 3e-12
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDE--TWTIKQIDEYSNKIARILQDDGFKKGDV 176
TL S +++ +R P+ P F T +++D +N++A LQ G K GD
Sbjct: 6 RMTAELTLASLLERAARRNPDRPALIFLGRGGRLTYRELDRRANRLAAALQALGVKPGDR 65
Query: 177 LALMCENRPEYVGVWLGAAKLGVI 200
+A++ N PE++ +L A + G +
Sbjct: 66 VAILLPNSPEFLIAFLAALRAGAV 89
>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is a required
step before free fatty acids can participate in most
catabolic and anabolic reactions. Members of this family
include DitJ from Pseudomonas and similar proteins.
Length = 421
Score = 236 bits (605), Expect = 7e-69
Identities = 120/498 (24%), Positives = 202/498 (40%), Gaps = 88/498 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E N++A L G + GD +ALM +N PE++ W KLG ++ INT L+ +
Sbjct: 7 AELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVAVPINTALRGEE 66
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H + ++ I+V A+
Sbjct: 67 LAHILDHSGARLIVVD---------------------------------------TAA-- 85
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+LY TSGTTG PK ++ + ++L ++ LL L DV+ LP++
Sbjct: 86 -----------ILY--TSGTTGPPKGVLLTHAQLLFAARLAARLLGLRPDDVLLTPLPLF 132
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA 748
H AL++G+++ + +FSAS ++ K+ +G M L+ S
Sbjct: 133 HINAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPD 192
Query: 749 DYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808
D H + + G + IW F +RF V+ ++E YG TE ++ + P
Sbjct: 193 DRDHPLRFVFGAPLPAAIWPAFEERFGVK-LVEGYGMTETGVPIIAPGD--------PAP 243
Query: 809 LPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQSDPSRHFYGYA 865
+ P ++ +V + + + + G L +R + GY
Sbjct: 244 PGSCGRPRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFK--------------GYY 289
Query: 866 DKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEAT 925
E+ K N + F +GD DE G+LYF DR D R +GEN+S+ EVEA
Sbjct: 290 GMPEATAKAWRNGW------FHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVEAA 343
Query: 926 ISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDL-KLLVQGLDANLPAYARPLFVR 984
I + E V V +L +V + + L++ LP + P ++
Sbjct: 344 ILAHPAVAEAAVVAVP-SELGEDEVKAVVVLRPGETLDPEALLEFCRDRLPYFMVPRYIE 402
Query: 985 IMKAIEMTGTFKIKKIQL 1002
+ + T T KI+K +L
Sbjct: 403 FVDELPKTPTEKIQKAEL 420
Score = 62.6 bits (153), Expect = 5e-10
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
+T ++ E N++A L G + GD +ALM +N PE++ W KLG ++
Sbjct: 1 GRRYTYAELAERVNRLAAGLLALGVRPGDRVALMLDNCPEFLRAWFALNKLGAVA 55
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme.
Length = 412
Score = 224 bits (573), Expect = 1e-64
Identities = 91/426 (21%), Positives = 172/426 (40%), Gaps = 29/426 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++DE +N++A L+ G GD +A++ N PE+V L K G ++ +L +
Sbjct: 3 RELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAAYVPLDPSLPAER 62
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + + ++K +I P++ + + + ++ + +L D AS
Sbjct: 63 LAYILEDSEAKVLITDDELLPKLLEVLLKLLVLLALIIVGDDGEGLDLLDDELLAGASAE 122
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
P+ P+ D IYTSGTTG PK ++ + +L L GD + LP
Sbjct: 123 PPAPPVDPDDLAYIIYTSGTTGKPKGVMLTHRNLLALAAGLAERFGLTPGDRVLLLLP-L 181
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFS--ASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746
H G + L+ G ++ + KF+ + KYK + + R LL + E
Sbjct: 182 HFDGSVWEIFGPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEE 241
Query: 747 EADY--SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804
+ S ++V G + ++ + +RF ++ YG TE + V
Sbjct: 242 KKYDLSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKP 301
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGY 864
P+ ++ ++ D + P +GE+ P GY
Sbjct: 302 GSI-----GRPLPGVEVKVL------DEEGEPV-------PPGEVGELCIRGPGV-ARGY 342
Query: 865 -ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
D + + ++ +E+ + + +GD+ DE GYL R D + +GE + E+E
Sbjct: 343 LNDPELTAERFVEDGWGM----YRTGDLGRWDEDGYLEILGRKDDQVKIRGERIEPGEIE 398
Query: 924 ATISKY 929
A + ++
Sbjct: 399 AVLLEH 404
Score = 57.0 bits (138), Expect = 3e-08
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T+ +++DE +N++A L+ G GD +A++ N PE+V L K G
Sbjct: 1 TY--RELDERANRLAAALRALGVGPGDRVAILLPNSPEWVVAILAVLKAGAA 50
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional.
Length = 542
Score = 225 bits (576), Expect = 1e-63
Identities = 137/504 (27%), Positives = 230/504 (45%), Gaps = 31/504 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ + A L G K+GD +ALMC NR E++ V+LG A LG I+ INT L+
Sbjct: 50 AEAARAAAAAAHALAAAGVKRGDRVALMCGNRIEFLDVFLGCAWLGAIAVPINTALRGPQ 109
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRES-IPDVKLFLLDE-TKPDLPNLSDLMKTTPAS 626
L H + ++ ++V A +EA +P ++LLD +P P
Sbjct: 110 LEHILRNSGARLLVVEAALLAALEAADPGDLPLPAVWLLDAPASVSVPAGWSTAPLPPLD 169
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
P+ +Q D+ +YTSGTTG K P+ + G+ L +G+ DV+Y LP
Sbjct: 170 APAPAAAVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLEIGADDVLYTTLP 229
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746
++H+ L AL+ G++ + +FSAS ++ ++ +G M LL+
Sbjct: 230 LFHT-NALNAFFQALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPAR 288
Query: 747 EADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIP 806
E+D +H+V +G G+ + A F +RF V +++ YG+TE N ++ + + G +
Sbjct: 289 ESDRAHRVRVALGPGVPAALHAAFRERFGVD-LLDGYGSTETNF-VIAVTHGSQRPGSMG 346
Query: 807 TLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYAD 866
L P F V D +Q + D +PG ++ ++ +P GY
Sbjct: 347 RLAPGFEARVV----D-EHDQELPD-----------GEPGELL--LRADEPFAFATGYFG 388
Query: 867 KKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI 926
E + N+ +F +GD +V D G+ F DR D R +GEN+S+ EVE +
Sbjct: 389 MPEKTVEAWRNL------WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVL 442
Query: 927 SKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKLLVQGLDANLPAYARPLFVRI 985
+ V+ V +L M A+V ++ LV+ + L +A P +V
Sbjct: 443 LSHPAVAAAAVFPVP-SELGEDEVMAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEF 501
Query: 986 MKAIEMTGTFKIKKIQLQNEGFDP 1009
+ A+ T K++K L+ +G
Sbjct: 502 VAALPKTENGKVQKFVLREQGVTA 525
Score = 67.1 bits (164), Expect = 3e-11
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
TL + + +R P+ P F WT + + A L G K+GD +ALMC NR
Sbjct: 22 TLPAMLARQAERYPDRPLLVFGGTRWTYAEAARAAAAAAHALAAAGVKRGDRVALMCGNR 81
Query: 185 PEYVGVWLGAAKLGVI 200
E++ V+LG A LG I
Sbjct: 82 IEFLDVFLGCAWLGAI 97
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 184 bits (470), Expect = 1e-49
Identities = 134/515 (26%), Positives = 222/515 (43%), Gaps = 68/515 (13%)
Query: 538 ENRPEYVGVWLGAAKLG--VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIR 595
N PE + WL AA LG V+ +NT + L I + ++ A + P ++ +
Sbjct: 60 GNTPEML-FWLAAAALGGYVLVG-LNTTRRGAALAADIRRADCQLLVTDAEHRPLLDGL- 116
Query: 596 ESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAA 655
+P V++ +D P ++L+ A + P + D + I+TSGTTG PKA
Sbjct: 117 -DLPGVRVLDVDT-----PAYAELVA--AAGALTPHREVDAMDPFMLIFTSGTTGAPKAV 168
Query: 656 IMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSA 715
+ ++ G+ L DV Y +P++HS + G PA+ G+++A+ KFSA
Sbjct: 169 RCSHGRLAFAGRALTERFGLTRDDVCYVSMPLFHSNAVMAGWAPAVASGAAVALPAKFSA 228
Query: 716 SNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMR---GDIWAKFVK 772
S + D +Y Y+G+ Y+LA+ E D + + + G DI A+F +
Sbjct: 229 SGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLR--VAFGNEASPRDI-AEFSR 285
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNT-EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRD 831
RF Q + + YG++EG +V T G++G I +
Sbjct: 286 RFGCQ-VEDGYGSSEGAVIVVREPGTPPGSIG----------RG--------APGVAIYN 326
Query: 832 PKTG-LCIRCKYNQPGMI------IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDK 884
P+T C +++ G + IGE+ + + F GY + E+ + + + G
Sbjct: 327 PETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRH----GM- 381
Query: 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944
+ SGD+ D G++YF RT D R GEN+S +E + ++ VY V
Sbjct: 382 -YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVP--- 437
Query: 945 LDGRAG---MIAIV-DTSNQVDLKLLVQGLDA--NLPAYARPLFVRIMKAIEMTGTFKIK 998
D R G M A+V D L A +L A P +VRI + T T K+
Sbjct: 438 -DERVGDQVMAALVLRDGATFDPDAFAAFLAAQPDLGTKAWPRYVRIAADLPSTATNKVL 496
Query: 999 KIQLQNEGFDPSQISDDLYV---RQGSEFVRMTPN 1030
K +L +G+ D + + R G + M+
Sbjct: 497 KRELIAQGWA---TGDPVTLWVRRGGPAYRLMSEP 528
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 182 bits (464), Expect = 6e-49
Identities = 139/486 (28%), Positives = 210/486 (43%), Gaps = 55/486 (11%)
Query: 538 ENRPEYVGVWLGAAKL-GVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRE 596
+N PE+ + LGAA L G++ +N + L I+ + ++ + E +
Sbjct: 62 DNTPEF-SLLLGAAALSGIVPVGLNPTRRGAALARDIAHADCQLVLTES---AHAELLDG 117
Query: 597 SIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
P V++ +D P +D + +E D + I+TSGT+G PKA
Sbjct: 118 LDPGVRVINVDS-----PAWADELAAHRDAEPPFRVA-DPDDLFMLIFTSGTSGDPKAVR 171
Query: 657 MPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716
+ KV G + LG DV Y +P++HS + G AL G+SIA+R KFSAS
Sbjct: 172 CTHRKVASAGVMLAQRFGLGPDDVCYVSMPLFHSNAVMAGWAVALAAGASIALRRKFSAS 231
Query: 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGV-GMRGDIWAKFVKRFH 775
+ D +Y Y+G+ Y+LA+ E D + + + G G GDI A+F +RF
Sbjct: 232 GFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGDI-ARFARRFG 290
Query: 776 VQTIIEFYGATEGNANLVNMDNT-EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKT 834
+++ +G+TEG + +T GA+G L I DP T
Sbjct: 291 C-VVVDGFGSTEGGVAITRTPDTPPGALGP------------------LPPGVAIVDPDT 331
Query: 835 GL-CIRCKYNQPGMI-----IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLS 888
G C + ++ IGE+ + F GY + E+ + + + S
Sbjct: 332 GTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMR------GGVYWS 385
Query: 889 GDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV---KVGDL 945
GD+ D GY YF R GD R GEN+ T +E + +Y TE VY V VGD
Sbjct: 386 GDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGD- 444
Query: 946 DGRAGMIAIVDTSNQV-DLKLLVQGLDA--NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
M A+V D + L A +L P +VR+ + T TFK+ K QL
Sbjct: 445 ---QVMAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQL 501
Query: 1003 QNEGFD 1008
EG D
Sbjct: 502 SAEGVD 507
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I. This
family includes acyl- and aryl-CoA ligases, as well as
the adenylation domain of nonribosomal peptide
synthetases and firefly luciferases. The
adenylate-forming enzymes catalyze an ATP-dependent
two-step reaction to first activate a carboxylate
substrate as an adenylate and then transfer the
carboxylate to the pantetheine group of either coenzyme
A or an acyl-carrier protein. The active site of the
domain is located at the interface of a large N-terminal
subdomain and a smaller C-terminal subdomain.
Length = 338
Score = 163 bits (414), Expect = 4e-44
Identities = 84/368 (22%), Positives = 146/368 (39%), Gaps = 37/368 (10%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
D +YTSGTTG PK ++ + +L Q + L GDV+ + LP++H GG G
Sbjct: 1 DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQAIGLTEGDVLLSVLPLFHVVGGGSGL 60
Query: 698 IPALILGSSIAIRTKFS-ASNYFRDCAKYKCNAGIYIGEMCRYLLAS-KESEADYSHQVV 755
+ AL+ G ++ + F ++ +Y+ + + L + ++ D S +
Sbjct: 61 LGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGYDLSS--L 118
Query: 756 KMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNAN-LVNMDNTEGAVGIIPTLLPT 811
+++ G + ++ +F +R I+E YG TE + N D+ G + +P
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAP-ILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPG 177
Query: 812 FLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQ 871
V ++ D + P +GE+ P GY +
Sbjct: 178 V--EVRVV-----------DEEGKPL-------PPGEVGELVVRGPWV-MKGYWNNPPET 216
Query: 872 KKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931
D ++ +GD+ +DE GYLY R+ D + GENV EVE+ + ++
Sbjct: 217 -----TAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGENVYPAEVESVLLQHPA 271
Query: 932 YTEFTVYGVKVGDLDGRAGMIAIVD-TSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIE 990
E V GV D G + +V + L L L Y P + + +
Sbjct: 272 VAEAAVVGVPDEDR-GERIVAFVVLRPGADALAEELKAHLRERLAPYKVPRVIEFVDELP 330
Query: 991 MTGTFKIK 998
T + KI
Sbjct: 331 KTASGKID 338
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
[Lipid metabolism].
Length = 528
Score = 142 bits (359), Expect = 3e-35
Identities = 109/526 (20%), Positives = 193/526 (36%), Gaps = 66/526 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ ++A L+D G KGD +A+ N PE V L A++G I A+++ L +
Sbjct: 44 GDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEA 103
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLD--ETKPDLPNLSDLMKTTPAS 626
+ I+ + K +I + + I + D L + ++
Sbjct: 104 VADRIADLGPKVLIADDGTFRNGKEI-ALLEDADAVLSSVVVVPRLGLWYDEAVEKASEK 162
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHLLSLGSGDVIYNCL 685
EPL D L +YTSGTTG PK + + L+ K L GD +N
Sbjct: 163 F--EFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLLPGDRFWNSS 220
Query: 686 PMYHSAGGLIGTIPALILGSSIAI---RTKFSASNYFRDCAKYK-----CNAGIYIGEMC 737
G L G++ + R +S + KYK +
Sbjct: 221 DPGWIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFL----- 275
Query: 738 RYLLASKESEADYSHQVVKMIG-VG--MRGDIWAKFVKRFHVQTIIEFYGATE-GNANLV 793
L Y ++++G G + + + F V I++ YG TE G +
Sbjct: 276 -RRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSALGV-WILDIYGQTETGMGFIA 333
Query: 794 NM-DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGE 851
G+ G LP + V + + P G L +R + PGM +
Sbjct: 334 GRPPVKNGSSG-----LPLPGYAVRRV----DDEGNPVPPGVGELVVRLPW--PGMALT- 381
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
Y + D + ++ +++ +GD DE GY + R+ D +
Sbjct: 382 ----------Y-WNDPERYKEAYF-------GRWYRTGDWAERDEDGYFWLHGRSDDVIK 423
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLD 971
G+ + +E+E+ + + E V G V D ++A V + V+ L + +
Sbjct: 424 VSGKRIGPLEIESVLLAHPAVAEAAVVG--VPDPGKGQIVLAFVVLAAGVEPNELAEEIR 481
Query: 972 A----NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN---EGFDPS 1010
N+ +A P +R + + T + KI++ L+ +G D S
Sbjct: 482 RHVARNIGPHAIPRKIRFVDELPKTASGKIQRRLLRKILHKGEDLS 527
Score = 61.9 bits (151), Expect = 1e-09
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 135 KRRPNAPCYYFQDE-----TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 189
RP+ F E T + ++A L+D G KGD +A+ N PE V
Sbjct: 21 ADRPDDTAIIFDGEDGLFRELTYGDLRREVARLANALKDLGGVKGDRVAIYMPNSPEAVI 80
Query: 190 VWLGAAKLGVI 200
L A++G I
Sbjct: 81 ALLATARIGAI 91
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 133 bits (337), Expect = 2e-32
Identities = 116/519 (22%), Positives = 202/519 (38%), Gaps = 65/519 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE N++A L+ G KKGD +A+ N EY+ + K+G + IN LK +
Sbjct: 35 AELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFAVPKIGAVLHPINIRLKPEE 94
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE------TKPDLPNLSDLMKT 622
+ + ++ + + ++V + + P + AI +P V+ +++ P++ +L+
Sbjct: 95 IAYILNDAEDRVVLVDSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAA 154
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIY 682
+ P + +D+ +YTSGTTG PK ++ + + L L L DV
Sbjct: 155 ASDTFDFP--DIDENDAAAMLYTSGTTGHPKGVVLSHRNLFLHSLAVCAWLKLSRDDVYL 212
Query: 683 NCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK-----CNAGIYIGEM 736
+PM+H GL AL+ G+ I +F N + I+
Sbjct: 213 VIVPMFHVHAWGL--PYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIW---- 266
Query: 737 CRYLLASKES-EADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE----G 788
+ LL + + D+S ++++ G + + +F ++F + +++ YG TE
Sbjct: 267 -QMLLKAPRAYFVDFSS--LRLVIYGGAALPPALLREFKEKFGID-LVQGYGMTETSPVV 322
Query: 789 NANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMI 848
+ P I+ D E P D
Sbjct: 323 SVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDE-LP-PDGGE-------------- 366
Query: 849 IGEIKQSDPSRHFYGY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
+GEI P GY + + + I + +GD+ +DE GYLY DR
Sbjct: 367 VGEIIVRGPW-LMQGYWNRPEATAETID-------GGWLHTGDVGYIDEDGYLYITDRIK 418
Query: 908 DTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI--AIV--DTSNQVDL 963
D GEN+ E+E + + E V GV D + G A+V +D
Sbjct: 419 DVIISGGENIYPRELEDALYGHPAVAEVAVIGVP----DEKWGERPVAVVVLKPGATLDA 474
Query: 964 KLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
K L L L + P + + + T KI K L
Sbjct: 475 KELRAFLRGRLAKFKLPKRIAFVDELPRTSVGKILKRVL 513
Score = 65.2 bits (160), Expect = 1e-10
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 134 VKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193
++ P+ YF T ++DE N++A L+ G KKGD +A+ N EY+ +
Sbjct: 16 ARKHPDKEAVYFDGRRTTYAELDERVNRLANALRALGVKKGDRVAVFDWNSHEYLEAYFA 75
Query: 194 AAKLGVI 200
K+G +
Sbjct: 76 VPKIGAV 82
>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase;
Validated.
Length = 517
Score = 133 bits (336), Expect = 2e-32
Identities = 122/515 (23%), Positives = 214/515 (41%), Gaps = 58/515 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E N+ A + G +KGD +AL +N PE++ W G AK+G I IN L ++
Sbjct: 41 LELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREE 100
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRE--SIPDVKLFLLDETKPDLPNLSDL--MKTTP 624
+ ++ ++ SA +YP I++ + P + L P +S +K
Sbjct: 101 SAWILQNSQASLLVTSAQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQ 160
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+ + + PL T D+ ++TSGTT PK ++ ++ + G +L DV
Sbjct: 161 PATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTV 220
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK 744
+P +H + A G++ + K+SA ++ KY+ I M R L+
Sbjct: 221 MPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQP 280
Query: 745 ESEADYSHQVVKM-----IGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE 799
S D H + ++ + + F +RF V+ ++ YG TE +V
Sbjct: 281 PSANDRQHCLREVMFYLNLSDQEKDA----FEERFGVR-LLTSYGMTE---TIV------ 326
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP---KTGLC----IRCKYNQ--PGMIIG 850
G +G P R P + G C IR +N+ P IG
Sbjct: 327 GIIGDRPG-------------------DKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIG 367
Query: 851 EIK-QSDPSRH-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGD 908
EI + P + F Y ++ K+LE D + +GD +DE G+ YF DR +
Sbjct: 368 EICIKGVPGKTIFKEYYLDPKATAKVLE-----ADGWLHTGDTGYVDEEGFFYFVDRRCN 422
Query: 909 TYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQ 968
+ GENVS +E+E I+ + + V G+K D +++ + +
Sbjct: 423 MIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFA 482
Query: 969 GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ N+ + P ++ I K + + KI K L+
Sbjct: 483 FCEQNMAKFKVPSYLEIRKDLPRNCSGKIIKKNLK 517
Score = 40.1 bits (94), Expect = 0.006
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++ +++E N+ A + G +KGD +AL +N PE++ W G AK+G I
Sbjct: 37 RYSYLELNEEINRTANLFYSLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAI 88
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting
insects and 4-Coumarate-CoA Ligase (4CL). This family
contains two functionally unique groups of proteins; one
group is insect firefly luciferases and the other is
plant 4-coumarate:coenzyme A ligases. However, they
share significant sequence similarity in spite of their
functional diversity. Luciferase catalyzes the
production of light in the presence of MgATP, molecular
oxygen, and luciferin. In the first step, luciferin is
activated by acylation of its carboxylate group with
ATP, resulting in an enzyme-bound luciferyl adenylate.
In the second step, luciferyl adenylate reacts with
molecular oxygen, producing an enzyme-bound excited
state product (Luc=O*) and releasing AMP. This
excited-state product then decays to the ground state
(Luc=O), emitting a quantum of visible light.
4-coumarate:coenzyme A ligase is a key enzyme in the
phenylpropanoid metabolic pathway for monolignol and
flavonoid biosynthesis. It catalyzes the synthesis of
hydroxycinnamate-CoA thioesters in a two-step reaction,
involving the formation of hydroxycinnamate-AMP
anhydride and then the nucleophilic substitution of AMP
by CoA. The phenylpropanoid pathway is one of the most
important secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 487
Score = 129 bits (326), Expect = 2e-31
Identities = 111/445 (24%), Positives = 191/445 (42%), Gaps = 53/445 (11%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A T + A + + + ++A+ L+ G K+GDV+AL+ N E+ V+LG G I +
Sbjct: 5 ADTGTELTFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGIVSA 64
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEI-EAIRESIPDVKLFLLDETKPDLPNLSD 618
N + L H + K K I ++ EA +E P V++ +LD + + D
Sbjct: 65 ANPSYTPDELAHQLKISKPKLIFCDPDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIED 124
Query: 619 LMKTTPASEVK--PSEPLQTSDSLLYI-YTSGTTGLPKAA------IMPNFKVLLGGQVG 669
L++ +E + P+ + D + Y+SGTTGLPK I+ N + G
Sbjct: 125 LLEPRLGAEDEFRPTPLIDGKDDTAALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKG 184
Query: 670 KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA 729
S DV+ LP YH+ GL T+ +L+ G+++ I KF + + + KYK +
Sbjct: 185 NP---DSSNDVVLTFLPFYHAY-GLTTTLASLLCGATVIIMPKFDSETFLKLIEKYKVTS 240
Query: 730 GIYIGEMCRYLLASKES--EADYSHQVVKMIGVGMRG---DIWAKFVKRFHVQTIIEFYG 784
+++ LA + D S +++I G ++ + KRF TI + YG
Sbjct: 241 -LFLVPPIAVALAKSPLVDKYDLSS--LRVIFSGAAPLSKELQEELRKRFPNTTIKQGYG 297
Query: 785 ATEGNANLVNMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841
TE + G+VG L+P I+ D ++ + + LC++
Sbjct: 298 MTETGPATTLTPPGDEKPGSVGR---LVPNVE--AKIVDEDGGKSLG-PNERGELCVK-- 349
Query: 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901
I GY + E+ K+ ++ D + +GD+ DE G Y
Sbjct: 350 ---GPQI------------MKGYLNNPEATKETIDE-----DGWLHTGDIGYFDEDGNFY 389
Query: 902 FKDRTGDTYRWKGENVSTMEVEATI 926
DR + ++KG V E+EA +
Sbjct: 390 IVDRKKELIKYKGYQVPPAELEAVL 414
Score = 45.7 bits (109), Expect = 1e-04
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T + + + ++A+ L+ G K+GDV+AL+ N E+ V+LG G I
Sbjct: 12 TFADLLKKALRLAKGLRKLGLKQGDVVALISPNSIEFPPVFLGCLAAGGI 61
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA
synthetases similar to Escherichia coli FadD. This
subfamily of the AMP-forming adenylation family contains
Escherichia coli FadD and similar prokaryotic fatty acid
CoA synthetases. FadD was characterized as a long-chain
fatty acid CoA synthetase. The gene fadD is regulated by
the fatty acid regulatory protein FadR. Fatty acid CoA
synthetase catalyzes the formation of fatty acyl-CoA in
a two-step reaction: the formation of a fatty acyl-AMP
molecule as an intermediate, followed by the formation
of a fatty acyl-CoA. This is a required step before free
fatty acids can participate in most catabolic and
anabolic reactions.
Length = 468
Score = 120 bits (304), Expect = 1e-28
Identities = 111/525 (21%), Positives = 190/525 (36%), Gaps = 122/525 (23%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE S++ A LQ G KKGD +ALM N P++ + G K G + +N +
Sbjct: 28 AELDELSDRFAAYLQQLGVKKGDRVALMLPNCPQFPIAYFGILKAGAVVVPVNPLYTPRE 87
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H ++ +K +IV+ + D + + +
Sbjct: 88 LEHQLNDSGAKVLIVAI-----------------------------SFEDALASGAPLPL 118
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAA-------------IMPNFKVLLGGQVGKHLLSL 675
L D + YT GTTG+PK A I K L G+
Sbjct: 119 PV--ELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIAAWVKDLREGE-------- 168
Query: 676 GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG- 734
D LP++H G + + L LG++ + F N ++ +Y+ I+ G
Sbjct: 169 ---DRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFT--IFPGV 223
Query: 735 -EMCRYLLASKE-SEADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGN 789
+ LL E + D+S +++ G + ++ +F ++ ++E YG TE +
Sbjct: 224 PTLYNALLNHPEFKKYDFSS--LRLCISGGAPLPVEVAERFEEKTGA-PLVEGYGLTETS 280
Query: 790 ----ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCKY 842
N ++ + G++G+ P+ + +V E + + G L +R
Sbjct: 281 PVTTVNPLDGERKPGSIGL----------PLPGTEVKIVDDEGNELPPGEVGELVVR--- 327
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G + GY ++ E V G + +GD+ MDE GY Y
Sbjct: 328 ---GPQV-----------MKGYWNRPEET----AEVLTDG--WLRTGDIGYMDEDGYFYI 367
Query: 903 KDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK----VGDLDGRAGMI----AI 954
DR D G NV E+E + + V VG D G +
Sbjct: 368 VDRKKDMIIVGGFNVYPREIEEVLYSH--------PAVLEAAVVGVPDPYRGEAVKAFVV 419
Query: 955 VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
+ + + L+ L AY P V + + KI +
Sbjct: 420 LKEGASLTEEELIAFCRERLAAYKVPRQVEFRDELPKSAVGKILR 464
Score = 76.4 bits (189), Expect = 3e-14
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 126 LVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRP 185
L +++ +R P+ P F T ++DE S++ A LQ G KKGD +ALM N P
Sbjct: 1 LADLLERAARRFPDRPALTFFGRKLTYAELDELSDRFAAYLQQLGVKKGDRVALMLPNCP 60
Query: 186 EYVGVWLGAAKLGVI 200
++ + G K G +
Sbjct: 61 QFPIAYFGILKAGAV 75
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase.
The members of this family are putative long-chain fatty
acyl-CoA synthetases, which catalyze the ATP-dependent
activation of fatty acids in a two-step reaction. The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. Fatty acyl-CoA synthetases
are responsible for fatty acid degradation as well as
physiological regulation of cellular functions via the
production of fatty acyl-CoA esters.
Length = 430
Score = 118 bits (298), Expect = 4e-28
Identities = 114/505 (22%), Positives = 190/505 (37%), Gaps = 90/505 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E +++A +LQ+ G +KGD +AL +N P++V + + G + +N ++
Sbjct: 5 AELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAVVVPVNPMNREAE 64
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H ++ ++ +IV E L D+
Sbjct: 65 LEHILNDSGARVLIV----------------------GSE-------LDDVA-------- 87
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ YTSGTTGLPK + + VL L V+ LP++
Sbjct: 88 ------------VIPYTSGTTGLPKGCMHTHRTVLATAAASAAWSGLTPDSVLLAFLPLF 135
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SE 747
H AG + G+++ + T++ R +Y+ I M LLA ++
Sbjct: 136 HVAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFAD 195
Query: 748 ADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIP 806
D S +VV G + + + + E YG TE T P
Sbjct: 196 YDLSSLKVVGGGGAALPPAVAERLKALTGLLY-EEGYGLTE----------THTCTHFNP 244
Query: 807 TLLP--TFLH-PVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
P L PV ++ DP+TG + PG GEI P F G
Sbjct: 245 PDRPKPQCLGIPVFGTDARVI------DPETG-----EELPPGE-EGEIVVRGPQV-FKG 291
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
Y ++ E+ + + G ++F +GD+ +DE GY +F DR G V EVE
Sbjct: 292 YWNRPEATAESF--IELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINVSGYKVWPAEVE 349
Query: 924 ATISKYLPYTEFTVYGVKVGDLDGRAG--MIAIV----DTSNQVDLKLLVQGLDANLPAY 977
A + ++ E V G D R G + A V D +V + +++ + AY
Sbjct: 350 ALLYQHPAVLEVCVIGRP----DPRRGEVVKAFVVLKPDYRGKVTEEDIIEWCRERMAAY 405
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQL 1002
P + + + T + K+ L
Sbjct: 406 KYPRIIEFVDELPKTASGKVLWRLL 430
Score = 39.6 bits (93), Expect = 0.008
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T ++ E +++A +LQ+ G +KGD +AL +N P++V + + G +
Sbjct: 3 TYAELLELVDRLAGLLQEKGVRKGDRVALYMQNSPQFVIAYYAILRAGAV 52
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL). 4-Coumarate:coenzyme A
ligase is a key enzyme in the phenylpropanoid metabolic
pathway for monolignol and flavonoid biosynthesis. It
catalyzes the synthesis of hydroxycinnamate-CoA
thioesters in a two-step reaction, involving the
formation of hydroxycinnamate-AMP anhydride and the
nucleophilic substitution of AMP by CoA. The
phenylpropanoid pathway is one of the most important
secondary metabolism pathways in plants and
hydroxycinnamate-CoA thioesters are the precursors of
lignin and other important phenylpropanoids.
Length = 504
Score = 107 bits (270), Expect = 3e-24
Identities = 107/447 (23%), Positives = 172/447 (38%), Gaps = 66/447 (14%)
Query: 498 DAA---ATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 554
DAA A T LE + ++A L G +KGDV+ L+ N E+ V+L G
Sbjct: 26 DAATGRALTYAELERLV----RRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAG 81
Query: 555 VISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP 614
+ N + + +K I ++ ++ ++ + LLD D
Sbjct: 82 AVVTTANPLYTPAEIAKQVKDSGAKLAITTSELAEKLASLALE----PVVLLDSA-DDGS 136
Query: 615 NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMP--NFKVLLGGQVGKHL 672
D + E P ++ D Y+SGTTG K ++ N + V
Sbjct: 137 AAIDDLLFADEPEP-PVVVIKQDDVAALPYSSGTTGRSKGVMLTHRNLIANVAQLVAGEG 195
Query: 673 LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-- 730
+ DV LPM+H G + + L LG+++ + +F + KYK
Sbjct: 196 PNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFDLEKFLAAIEKYKVTHLPV 255
Query: 731 ---IYIGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRF-HVQTIIEFY 783
I + L Y +K IG G + ++ F RF V+ + + Y
Sbjct: 256 VPPIVLA------LVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRARFPGVE-LGQGY 308
Query: 784 GATEGNANLVNMDNTE-----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838
G TE + E G+VG L+P VE + I DP+TG +
Sbjct: 309 GMTESSPVTTMCPVPEKDPKPGSVG---RLVPN------------VEAK-IVDPETGESL 352
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
NQP GE+ P GY + + + + I + D + +GD+ DE
Sbjct: 353 --PPNQP----GELWVRGPQV-MKGYLNNPEATAETIDK------DGWLHTGDLGYFDED 399
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEA 924
GYL+ DR + ++KG V+ E+EA
Sbjct: 400 GYLFIVDRLKELIKYKGFQVAPAELEA 426
Score = 34.2 bits (79), Expect = 0.40
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
T +++ ++A L G +KGDV+ L+ N E+ V+L G + +N
Sbjct: 34 TYAELERLVRRLAAGLAARGGRKGDVVLLLSPNSLEFPVVFLAVLSAGAVVTTAN 88
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 104 bits (262), Expect = 3e-23
Identities = 56/224 (25%), Positives = 93/224 (41%), Gaps = 9/224 (4%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++D N++A L D G KKGD +A + N Y +WL A+ G + +N L +
Sbjct: 40 AELDAAVNRVAAALLDLGLKKGDRVAALGHNSDAYALLWLACARAGAVHVPVNFMLTGEE 99
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP-----NLSDLMKTT 623
L + + ++A +V P EA +P L L + +D +
Sbjct: 100 LAYILDHSGARAFLVDPALAPTAEAALALLPVDTLILSLVLGGREAPGGWLDFADWAEAG 159
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK-HLLSLGSGDVIY 682
+E P L D +YTSGT LPK A++ + + L+ V + + D+
Sbjct: 160 SVAE--PDVELADDDLAQILYTSGTESLPKGAMLTH-RALIAEYVSCIVAGDMSADDIPL 216
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
+ LP+YH A + P L +G++ I R +
Sbjct: 217 HALPLYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAER 260
Score = 60.3 bits (147), Expect = 3e-09
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 117 KRMAATNTTLVSEF-KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGD 175
+R + + ++S +R P+ F D +WT ++D N++A L D G KKGD
Sbjct: 3 ERSTRARRQTIGDILRRSARRYPDKTALVFGDRSWTYAELDAAVNRVAAALLDLGLKKGD 62
Query: 176 VLALMCENRPEYVGVWLGAAKLGVI 200
+A + N Y +WL A+ G +
Sbjct: 63 RVAALGHNSDAYALLWLACARAGAV 87
Score = 48.0 bits (115), Expect = 2e-05
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY D E F+ G +F SGD+ VMDE GY+ DR D + GENV++ EV
Sbjct: 380 GYWDDPEKT----AEAFRGG--WFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREV 433
Query: 923 EATI 926
E +
Sbjct: 434 EEAL 437
>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL)
similar to Fum10p of Gibberella moniliformis. FACL
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, followed by the formation of a fatty
acyl-CoA. This is a required step before free fatty acids
can participate in most catabolic and anabolic reactions.
Fum10p is a fatty acid CoA ligase involved in the
synthesis of fumonisin, a polyketide mycotoxin, in
Gibberella moniliformis.
Length = 345
Score = 101 bits (254), Expect = 5e-23
Identities = 91/380 (23%), Positives = 151/380 (39%), Gaps = 48/380 (12%)
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
D L ++TSGTTG PK + + +L + L D N +P++H G ++
Sbjct: 2 DDPALILHTSGTTGRPKGVPLTHKNLLASARNIAKSHKLTPSDRCLNVMPLFHIHGLIVS 61
Query: 697 TIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVK 756
+ L+ G S+ KFSAS ++ D AKY+ + + + LL + + ++
Sbjct: 62 LLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKPNPGKPPPRLR 121
Query: 757 MI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL-VNMDNTE----GAVGIIPTL 808
I + + + KRF V ++E YG TE + N G+VG P
Sbjct: 122 FIRSASAPLPPAVLDRLEKRFGVP-VLEAYGMTEAAHQIASNPLPPLVRKPGSVG-RPA- 178
Query: 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKK 868
V + I D P GEI P+ GY +
Sbjct: 179 ------GVEVA---------ILDDDGRP-------LPPGQEGEIVIRGPNV-TAGYLNNP 215
Query: 869 ESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISK 928
E+ ++ D +F +GD+ +DE GYL+ R + GE +S EVE + +
Sbjct: 216 EANREAFR------DGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPREVEEVLLR 269
Query: 929 YLPY-TEFTVYGV---KVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVR 984
P E V+GV G+ A ++ D+ V ++ L L A+ P +
Sbjct: 270 -HPAVAEAVVFGVPDELYGEEVA-AAVVLRADSK--VTIEELRDFARKRLAAFKVPKKIL 325
Query: 985 IMKAIEMTGTFKIKKIQLQN 1004
+ A+ T KI++ +L
Sbjct: 326 FVDALPKGATGKIQRRKLAE 345
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. MACS enzymes are
localized to mitochondria.
Length = 439
Score = 103 bits (258), Expect = 6e-23
Identities = 121/518 (23%), Positives = 186/518 (35%), Gaps = 114/518 (22%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ + SN++A L++ G ++GD + + PE L KLG +S ++
Sbjct: 10 GQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVSVPLSVLFGPDA 69
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ H + ++ ++ D PA
Sbjct: 70 VEHRLRDSGARVLVTDG-------------------------SD----------DPA--- 91
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG---GQVGKHLLSLGSGDVIYNCL 685
+ IYTSGTTG PK A+ + +VLLG G L+ GDV +
Sbjct: 92 ------------ILIYTSGTTGPPKGALHGH-RVLLGHLPGVELYFELAPRPGDVFWT-- 136
Query: 686 PM-YHSAGGLIGTI-PALILGSSI-AIR-TKFSASNYFRDCAKYKCNAGIYIGEMCRYLL 741
P + GGL+ + PAL G + A R +F F +Y + +
Sbjct: 137 PADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKMMR 196
Query: 742 ASKESEADY--SHQVVKMIG--VGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN--- 794
A Y + V G +G WA+ + T+ EFYG TE N + N
Sbjct: 197 RVGSERARYDLRLRAVASGGESLGEELLEWAR--DELGL-TVNEFYGQTEANLVVGNCAA 253
Query: 795 -MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI- 852
G++G P H VA++ D P +GEI
Sbjct: 254 LGPARPGSMG-----KPVPGHEVAVV-----------DDAGRP-------VPPGEVGEIA 290
Query: 853 -KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
K+ DP F GY + E+ K + L+GD+ D GYL+FK R D +
Sbjct: 291 VKRPDPVM-FLGYWNNPEATAA------KFAGDWLLTGDLGRRDADGYLWFKGRADDVIK 343
Query: 912 WKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA---IVDTSNQVDLKLLVQ 968
G + E+E + K+ E V GV D G I +V L
Sbjct: 344 SSGYRIGPAEIEECLLKHPAVLEAAVVGVP----DPERGEIVKAFVVLAEGVEPSDELAT 399
Query: 969 GLD----ANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L + L A+ P + + + MT T KI++ +L
Sbjct: 400 ELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRREL 437
Score = 45.8 bits (109), Expect = 1e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
E +T Q+ + SN++A L++ G ++GD + + PE L KLG +S
Sbjct: 5 EEYTFGQLKDASNRLANALRELGVERGDRVGVYLPQSPETAIAHLAVYKLGAVS 58
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.
Length = 513
Score = 103 bits (259), Expect = 8e-23
Identities = 118/520 (22%), Positives = 200/520 (38%), Gaps = 63/520 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ + A L G KGD +A+ N P +V LGA K G + +NT
Sbjct: 34 AELNARVRRAAAALAALGIGKGDRVAIWAPNSPHWVIAALGALKAGAVVVPLNTRYTADE 93
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT-----T 623
+ ++ +KA+ V L+ + +P ++ ++ ET+ D P ++ MKT
Sbjct: 94 AAYILARGDAKALFVLGLFLGVDYSATTRLPALEHVVICETEEDDP-HTEKMKTFTDFLA 152
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
+ + + D ++TSGTTG PK A++ + ++L L L GD
Sbjct: 153 AGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGLTEGDRYLA 212
Query: 684 CLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG--EMCRYLL 741
P +H G G L+ G++I F FR + + G M LL
Sbjct: 213 ANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETER--ITVLPGPPTMYNSLL 270
Query: 742 AS-KESEADYSHQVVKMIGVGMRG--DIWAKFVKRFH----VQTIIEFYGATEGNANLVN 794
S D S + + + G + ++RF V ++ YG +E + +
Sbjct: 271 QHPDRSAEDLSS-----LRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASG-VTT 324
Query: 795 MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVEN-------QPIRDPKTG-LCIRCKYNQPG 846
+ + + + T AI VEN + + + G L +R N
Sbjct: 325 FNRLDDDRKTVAGTIGT-----AI---AGVENKIVNELGEEVPVGEVGELLVR-GPNV-- 373
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
M GY D E+ ++ D + +GD+ +DE GYLY DR
Sbjct: 374 MK--------------GYYDDPEATAAAID-----ADGWLHTGDLGRLDEEGYLYIVDRK 414
Query: 907 GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-DTSNQVDLKL 965
D + G NV EVE + ++ E V GV L G G +V ++ +
Sbjct: 415 KDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERL-GEVGKAYVVLKPGAELTEEE 473
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L+ +L Y P + + + T K+ K L+ +
Sbjct: 474 LIAYCREHLAKYKVPRSIEFLDELPKNATGKVLKRALREK 513
Score = 45.7 bits (109), Expect = 1e-04
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
TL ++ +R + Y F D+ T +++ + A L G KGD +A+ N
Sbjct: 6 TLPELLARAARRFGDKEAYVFGDQRLTYAELNARVRRAAAALAALGIGKGDRVAIWAPNS 65
Query: 185 PEYVGVWLGAAKLG 198
P +V LGA K G
Sbjct: 66 PHWVIAALGALKAG 79
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS). MCS catalyzes the
formation of malonyl-CoA in a two-step reaction
consisting of the adenylation of malonate with ATP,
followed by malonyl transfer from malonyl-AMP to CoA.
Malonic acid and its derivatives are the building blocks
of polyketides and malonyl-CoA serves as the substrate
of polyketide synthases. Malonyl-CoA synthetase has
broad substrate tolerance and can activate a variety of
malonyl acid derivatives. MCS may play an important role
in biosynthesis of polyketides, the important secondary
metabolites with therapeutic and agrochemical utility.
Length = 430
Score = 101 bits (254), Expect = 1e-22
Identities = 114/497 (22%), Positives = 178/497 (35%), Gaps = 125/497 (25%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D S ++A+ L G GD +A++ EYV ++L + G ++ +N +
Sbjct: 15 GELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAGGVAVPLNPS----- 69
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
YP E I LSD
Sbjct: 70 -------------------YPAAEL--AYI-----------------LSD---------- 81
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMP------NFKVLLGGQVGKHLLSLGSGDVIY 682
S+P D L IYTSGTTG PK ++ N + L+ + DV+
Sbjct: 82 --SQPSLLVDPALIIYTSGTTGRPKGVVLTHGNLAANARALV------EAWRWTASDVLL 133
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY--L 740
+ LP++H G L G+S+ +F RD + +++G Y L
Sbjct: 134 HALPLHHVHGLFNALHCPLWAGASVEFLPRFDPQE--RDALRLLPRITVFMGVPTIYTRL 191
Query: 741 LASKESEADYSHQVVKMIGVGMR----G------DIWAKFVKRFHVQTIIEFYGATEGNA 790
L E +R G + ++ +R T++E YG TE
Sbjct: 192 LEHYE-----FDDAAAAAARNLRLFVSGSAALPVPVLERWEERTG-HTLLERYGMTETGM 245
Query: 791 NLVNMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
L N + E G VG+ LP VE + I D G + + G
Sbjct: 246 ALSNPLDGERRPGTVGLP---LPG------------VEVR-IVDEDGGEPL--AAGEVGE 287
Query: 848 IIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
I +++ P+ F Y +K E+ + F D +F +GD+ V+DE GY R
Sbjct: 288 I--QVR--GPNV-FSEYWNKPEATAE----AFTE-DGWFKTGDVGVVDEDGYYRILGRKS 337
Query: 908 -DTYRWKGENVSTMEVEATISKYLPY-TEFTVYGVKVGDLDGRAGMIAIVDTSN--QVDL 963
D + G VS +E+E + + P E V GV D D ++A+V + L
Sbjct: 338 DDIIKSGGYKVSALEIEEALLE-HPGVAEVAVIGVP--DPDWGEAVVAVVVPEAGAALTL 394
Query: 964 KLLVQGLDANLPAYARP 980
L L Y P
Sbjct: 395 AELRAWAREKLAPYKIP 411
Score = 46.5 bits (111), Expect = 7e-05
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 139 NAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198
+ + T ++D S ++A+ L G GD +A++ EYV ++L + G
Sbjct: 1 DRIALVDGGRSLTYGELDARSGRLAKALLALGLLPGDRVAVLAPKSAEYVVLYLAIWRAG 60
Query: 199 VI 200
+
Sbjct: 61 GV 62
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is a required
step before free fatty acids can participate in most
catabolic and anabolic reactions.
Length = 347
Score = 100 bits (251), Expect = 1e-22
Identities = 91/373 (24%), Positives = 143/373 (38%), Gaps = 37/373 (9%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
D L YTSGTTG PK A++ + VL G L L GD +P++H G ++G
Sbjct: 3 DPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGLTEGDRTLVPVPLFHVFGLVLGV 62
Query: 698 IPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-ASKESEADYSHQVVK 756
+ +L G+++ + KF R + + A + M LL + D S
Sbjct: 63 LASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPDFDKFDLSSLRTG 122
Query: 757 MIGVGMRGDIWAKFVK-RFHVQTIIEFYGATEGNANL---VNMDNTE---GAVGIIPTLL 809
+ G + ++ F + I YG TE + D E G VG
Sbjct: 123 ISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVG------ 176
Query: 810 PTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKE 869
P+ ++ I DP G PG +GEI S GY + E
Sbjct: 177 ----RPLPGVEVK------IVDPDGGEV------PPGE-VGEICVRGYSV-MKGYYNDPE 218
Query: 870 SQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKY 929
+ + ++ D + +GD+ MDE GYL R D GEN+ E+E + +
Sbjct: 219 ATAEAID-----ADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYPAEIEEALLTH 273
Query: 930 LPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAI 989
E V GV L ++ + + L+ L + P +VR + +
Sbjct: 274 PAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGRLARFKVPRYVRFVDEL 333
Query: 990 EMTGTFKIKKIQL 1002
T + KI+K +L
Sbjct: 334 PRTASGKIQKFKL 346
>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated.
Length = 549
Score = 102 bits (256), Expect = 2e-22
Identities = 115/450 (25%), Positives = 182/450 (40%), Gaps = 62/450 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE SN +AR L G + GD +A++ N +V A K+G L+NT
Sbjct: 78 AELDEQSNALARGLLALGVRAGDGVAVLARNHRGFVLALYAAGKVGARIILLNTGFSGPQ 137
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFL-----LDETKPDLPNLSDLM-KT 622
L + KA++ + + A+ + ++ + + + L DL+ +
Sbjct: 138 LAEVAAREGVKALVYDDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGS 197
Query: 623 TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS---LGSGD 679
+ A KP +P + I TSGTTG PK A P L LLS +G+
Sbjct: 198 STAPLPKPPKP-----GGIVILTSGTTGTPKGAPRPEPSPL---APLAGLLSRVPFRAGE 249
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
PM+H+ G T+ A+ LGS++ +R +F D AK+K A + + M
Sbjct: 250 TTLLPAPMFHATGWAHLTL-AMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSR 308
Query: 740 LLA-SKESEADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATE-GNANLVN 794
+L E A Y +K+I G + ++ + ++ F + YG+TE A +
Sbjct: 309 ILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFG-PVLYNLYGSTEVAFATIAT 367
Query: 795 MDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVEN-QPIRDPKTGLCIRCKYNQPGMIIG 850
++ G VG P + V I D EN + P ++G
Sbjct: 368 PEDLAEAPGTVGRPPKGV-----TVKI--LD--ENGNEV---------------PRGVVG 403
Query: 851 EIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTY 910
I + F GY D + ++ I D SGD+ DE G L+ R D
Sbjct: 404 RIFVGN-GFPFEGYTDGR-DKQII--------DGLLSSGDVGYFDEDGLLFVDGRDDDMI 453
Query: 911 RWKGENVSTMEVEATISKYLPYTEFTVYGV 940
GENV EVE ++ + E V GV
Sbjct: 454 VSGGENVFPAEVEDLLAGHPDVVEAAVIGV 483
Score = 50.3 bits (121), Expect = 5e-06
Identities = 21/89 (23%), Positives = 34/89 (38%)
Query: 111 RAILGTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDG 170
L + +R P+ + T T ++DE SN +AR L G
Sbjct: 36 DNGLRLAADIRRYGPFAGLVAHAARRAPDRAALIDERGTLTYAELDEQSNALARGLLALG 95
Query: 171 FKKGDVLALMCENRPEYVGVWLGAAKLGV 199
+ GD +A++ N +V A K+G
Sbjct: 96 VRAGDGVAVLARNHRGFVLALYAAGKVGA 124
>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or
ACSM). MACS catalyzes the two-step activation of medium
chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes.
Length = 430
Score = 100 bits (251), Expect = 4e-22
Identities = 96/447 (21%), Positives = 156/447 (34%), Gaps = 102/447 (22%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E S++ A L+D G +GD +A++ PE V LG KLG + T L +
Sbjct: 4 AELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAVFIPGTTQLGPKD 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + + ++AI+ SA
Sbjct: 64 IRYRLERAGARAIVTSA------------------------------------------- 80
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVIYNCLP- 686
D L +TSGTTGLPK + + LG V G + L L D+ +
Sbjct: 81 --------DDPALLYFTSGTTGLPKMVLHTH-SYPLGHLVTGAYWLDLRPDDLHWTIADP 131
Query: 687 --MYHSAGGLIGTIPALILGSSIAIR--TKFSASNYFRDCAKYKCNAGIYIGEMC----- 737
+ L +LG+++ + +F A +Y + C
Sbjct: 132 GWAKGAWSSLFA---PWLLGAAVFVYHGRRFDAERTLELLERYG------VTTFCAPPTA 182
Query: 738 -RYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
R LL S D+SH + V G + ++ + + I + YG TE + N
Sbjct: 183 YRMLLQQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATGL-PIRDGYGQTETGLLVANF 241
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855
E G + P + VAII + E + G I +K
Sbjct: 242 PGMEVKPGSMGRPAPG--YRVAIIDDEGNE--------------LPPGEEGDIAVRVKPR 285
Query: 856 DPS--RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
P R + +K E+ ++L+GD + DE GY +F R D +
Sbjct: 286 PPGLFRGYLKDPEKTEATI---------RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSS 336
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGV 940
G + EVE+ + ++ E V G
Sbjct: 337 GYRIGPFEVESALIEHPAVAEAAVVGS 363
Score = 51.6 bits (124), Expect = 1e-06
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
WT ++ E S++ A L+D G +GD +A++ PE V LG KLG +
Sbjct: 1 WTFAELKEESDRAANFLKDLGVGRGDRVAVLLPRVPELWAVILGCIKLGAV 51
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 97.9 bits (245), Expect = 8e-22
Identities = 73/302 (24%), Positives = 119/302 (39%), Gaps = 43/302 (14%)
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
D L +YTSGTTG PK ++ + +L + L GDV P+YH+AGGL
Sbjct: 1 DDPALILYTSGTTGRPKGVMLTHRNLLANAVNALAGVDLSPGDVYLLAAPLYHAAGGL-F 59
Query: 697 TIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSHQVV 755
+PAL G ++ + KF +++ + M + LL + + D S +
Sbjct: 60 LLPALAAGGTVVLMPKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARYDLSS--L 117
Query: 756 KMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE-----GAVGIIPT 807
++I G M ++ ++ F ++ YG TE + + G+VG
Sbjct: 118 RLIIYGAAPMPAELKRAMIEWFGPV-FVQGYGMTETGPTTTLLSPEDWLRKLGSVGR--- 173
Query: 808 LLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADK 867
P V I+ D PG +GEI P+ +
Sbjct: 174 --PVPGVEVRIV-----------DEDGREL------PPGE-VGEIVVRGPAVMAGYWNRP 213
Query: 868 KESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATIS 927
+ + + + G + +GD+ +DE GYLY DR D GEN+ EVE +
Sbjct: 214 EATAE-----ALRDG--WLHTGDLGYLDEDGYLYIVDRKKDMIISGGENIYPAEVENVLL 266
Query: 928 KY 929
+
Sbjct: 267 AH 268
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase.
2,3-dihydroxybenzoate-AMP ligase activates
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate. However, it can also
catalyze the ATP-PPi exchange for 2,3-DHB analogs, such
as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB
and 2,5-DHB, but with less efficiency. Proteins in this
family are the stand-alone adenylation components of
non-ribosomal peptide synthases (NRPSs) involved in the
biosynthesis of siderophores, which are low molecular
weight iron-chelating compounds synthesized by many
bacteria to aid in the acquisition of this vital trace
elements. In Escherichia coli, the
2,3-dihydroxybenzoate-AMP ligase is called EntE, the
adenylation component of the enterobactin NRPS system.
Length = 483
Score = 99.2 bits (248), Expect = 1e-21
Identities = 100/522 (19%), Positives = 170/522 (32%), Gaps = 110/522 (21%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D +++A L G GD + + N E+V ++ KLG I L +
Sbjct: 44 RELDAAVDRLAAGLLALGIGPGDRVLVQLPNVAEFVILYFALFKLGAIPVLALPAHRAHE 103
Query: 569 LVHSISTVKSKAIIV-----SALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
+ H ++KA I+ Y + E +PDV LF L
Sbjct: 104 IGHFARQSEAKAYIIADRFSGFDYAALARELLEELPDVALFQL----------------- 146
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPN------FKVLLGGQVGKHLLSLGS 677
+ GTTGLPK +P + + L
Sbjct: 147 ---------------------SGGTTGLPKL--IPRTHNDYLYSARASAEACG----LDP 179
Query: 678 GDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEM 736
G V LP H+ G + AL+ G ++ + S F + K + +
Sbjct: 180 GTVYLAVLPAAHNFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPAL 239
Query: 737 CRYLLASKE-SEADYSHQVVKMIGVGMRGDIWAKF----VKRFHVQ---TIIEFYGATEG 788
L + E +AD S +++I VG A +R + + + +G EG
Sbjct: 240 LNLWLEAAEWDQADLSS--LRVIQVGG-----APLSPELARRVEERLGCPLQQVFGMAEG 292
Query: 789 NANLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCK 841
N +D+ G P + +V + +P+ + G L R
Sbjct: 293 LVNYTRLDDPPDVIMRTQG-----RPISPA----DEIRIVDDQGEPVPPGEVGELLTRGP 343
Query: 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901
Y GY E + F D ++ +GD++ +D GY
Sbjct: 344 YT-----------------IRGYYRAPEHNAR----AFTD-DGFYRTGDLVRIDADGYYR 381
Query: 902 FKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV 961
R D GE +S E+E + + + V G+ L R +
Sbjct: 382 VVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGAAP 441
Query: 962 DLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L L L L + P + ++ ++ +T K+ K L
Sbjct: 442 TLAELRAFLREQGLAKFKLPDRLEVVDSLPLTPVGKVDKKAL 483
Score = 48.4 bits (116), Expect = 2e-05
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ TL + R P+ T +++D +++A L G GD + +
Sbjct: 13 GDQTLGDLLAANAARHPDRTAVVDGPRRLTYRELDAAVDRLAAGLLALGIGPGDRVLVQL 72
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+V ++ KLG I
Sbjct: 73 PNVAEFVILYFALFKLGAI 91
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 95.6 bits (238), Expect = 3e-20
Identities = 111/523 (21%), Positives = 195/523 (37%), Gaps = 64/523 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ +++A L G ++GD +A+ N E+V ++L A+LG +NT +
Sbjct: 39 AELRALVDRLAAWLAAQGVRRGDRVAVWLPNCIEWVVLFLACARLGATVIAVNTRYRSHE 98
Query: 569 LVHSISTVKSKAIIVSA----LYYPEI--EAIRESIPDVK-LFLLDETKPDLPN------ 615
+ H + +++ ++V + + I +++P ++ + ++D+ P
Sbjct: 99 VAHILGRGRARWLVVWPGFKGIDFAAILAAVPPDALPPLRAIAVVDDAADATPAPAPGAR 158
Query: 616 --LSDL--MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH 671
L L A+ + ++P L TSGTT PK + +L +
Sbjct: 159 VQLFALPDPAPPAAAGERAADP---DAGALLFTTSGTTSGPKLVLHRQATLLRHARAIAR 215
Query: 672 LLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGI 731
G V+ LP G + AL G+ + F A+ R +++
Sbjct: 216 AYGYDPGAVLLAALPFC-GVFGFSTLLGALAGGAPLVCEPVFDAARTARALRRHRVTHTF 274
Query: 732 YIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQ--TIIEFYGATEGN 789
EM R +L + AD+ ++ G + + + YG++E
Sbjct: 275 GNDEMLRRILDTAGERADFPS--ARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQ 332
Query: 790 A--NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPG 846
A L + +V I P P A ++ RDP+ G L G
Sbjct: 333 ALVALQPATDPV-SVRIEGGGRP--ASPEARVR--------ARDPQDGALL------PDG 375
Query: 847 MIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRT 906
GEI+ PS GY D ++ + L + D YF +GD+ G ++ R
Sbjct: 376 E-SGEIEIRAPSL-MRGYLDNPDATARALTD-----DGYFRTGDLGYTRGDGQFVYQTRM 428
Query: 907 GDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV--GDLDGRAGMIAIV--DTSNQVD 962
GD+ R G V+ E+E + + LP V +V DG+ +A V D
Sbjct: 429 GDSLRLGGFLVNPAEIEHAL-EALP----GVAAAQVVGATRDGKTVPVAFVIPTDGASPD 483
Query: 963 LKLLVQGLDANLPAY---ARPLFVRIMKAIEMTGTFKIKKIQL 1002
L+ L + AR V E KI+K +L
Sbjct: 484 EAGLMAACREALAGFKVPARVQVVEAFPVTESANGAKIQKHRL 526
Score = 42.0 bits (99), Expect = 0.001
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 11/116 (9%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
A TL S + RP+A +D + ++ +++A L G ++GD +A
Sbjct: 5 AAPRADTLASLLDAHARARPDAVALIDEDRPLSRAELRALVDRLAAWLAAQGVRRGDRVA 64
Query: 179 LMCENRPEYVGVWLGAAKLGVISKLSNVVW----LAQLLGKK----MV---HFKGI 223
+ N E+V ++L A+LG N + +A +LG+ +V FKGI
Sbjct: 65 VWLPNCIEWVVLFLACARLGATVIAVNTRYRSHEVAHILGRGRARWLVVWPGFKGI 120
>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL). CBAL catalyzes
the conversion of 4-chlorobenzoate (4-CB) to
4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step
adenylation and thioester-forming reactions.
4-Chlorobenzoate (4-CBA) is an environmental pollutant
derived from microbial breakdown of aromatic pollutants,
such as polychlorinated biphenyls (PCBs), DDT, and
certain herbicides. The 4-CBA degrading pathway converts
4-CBA to the metabolite 4-hydroxybezoate (4-HBA),
allowing some soil-dwelling microbes to utilize 4-CBA as
an alternate carbon source. This pathway consists of
three chemical steps catalyzed by 4-CBA-CoA ligase,
4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in
sequential reactions.
Length = 495
Score = 94.9 bits (236), Expect = 4e-20
Identities = 107/441 (24%), Positives = 172/441 (39%), Gaps = 51/441 (11%)
Query: 514 YSNKIARI------LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
YS AR+ L G + +A++ N + V L +LG + AL+N LK
Sbjct: 31 YSELRARVEGVAARLHARGVRPQQRVAVVAPNSVDAVIALLALHRLGAVPALMNPRLKPA 90
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
+ I + A ++ A+ ++AI +S V++ L DL L + P E
Sbjct: 91 EIAELIKRGEMTAAVI-AVDAQVMDAIFQSGSGVRVLALG----DLVGLGEPESAGPPIE 145
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPN----FKVL-LGGQVGKHLLSLGSGDVIY 682
P EP Q + YTSGTTGLPK A++P +VL + Q G L G +V+
Sbjct: 146 DPPREPEQPA---FVFYTSGTTGLPKGAVIPQRAAESRVLFMSTQAG---LRHGRHNVVL 199
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA 742
+P+YH G + AL L + + +F ++ + + + + L A
Sbjct: 200 GLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTHLDALAA 259
Query: 743 SKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEG 800
+ E S + V G M D + V + + YG TE +L D G
Sbjct: 260 AAEGAPLKLDSLEHVTFAGATMP-DAVLERVNQHLPGEKVNIYGTTEAMNSLYMRDPRTG 318
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
+ P F V I++ P L P GE+ +
Sbjct: 319 TE-----MRPGFFSEVRIVRI-------GGSPDEAL--------PNGEEGELVVAAADAT 358
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY ++ ++ + K D ++ + D+ V+D G + R D GEN+
Sbjct: 359 FTGYLNQPQATAE------KLQDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHPS 412
Query: 921 EVEATISKYLPYTEFTVYGVK 941
EVE + + TE V G+
Sbjct: 413 EVERVLGRAPGVTEVVVIGLP 433
>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated.
Length = 502
Score = 93.8 bits (234), Expect = 8e-20
Identities = 78/313 (24%), Positives = 122/313 (38%), Gaps = 59/313 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++ SN++A L+ G ++GDV+A++ EN PE+ V+ A + G+ IN +L
Sbjct: 15 GELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAARRSGLYYTPINWHLTAAE 74
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLD-ETKP---DLPNLSDLMKTT 623
+ + + +K +IVSA + +P V L L+ P T
Sbjct: 75 IAYIVDDSGAKVLIVSAALADTAAELAAELPAGVPLLLVVAGPVPGFRSYEEALAAQPDT 134
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV----GKHLLSLGSG- 678
P ++ + Y+SGTTG PK P L G G L LG G
Sbjct: 135 PIADETAGADML--------YSSGTTGRPKGIKRP----LPGLDPDEAPGMMLALLGFGM 182
Query: 679 ----DVIY-NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
D +Y + P+YH+A G AL LG ++ + KF A +Y+ +
Sbjct: 183 YGGPDSVYLSPAPLYHTAPLRFGMS-ALALGGTVVVMEKFDAEEALALIERYRVTHSQLV 241
Query: 734 GEMCRYLLA-SKESEADY---SHQVV-------------KMIGVGMRGDIWAKFVKRFHV 776
M +L +E A Y S +V MI D W
Sbjct: 242 PTMFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMI------DWWGP------- 288
Query: 777 QTIIEFYGATEGN 789
I E+Y ++EG
Sbjct: 289 -IIHEYYASSEGG 300
Score = 49.1 bits (118), Expect = 9e-06
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 144 YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
E T +++ SN++A L+ G ++GDV+A++ EN PE+ V+ A
Sbjct: 6 APSGEVVTYGELEARSNRLAHGLRALGLREGDVVAILLENNPEFFEVYWAA 56
>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and
4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase).
Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A
ligase catalyze the first activating step for benzoate
and 4-hydroxybenzoate catabolic pathways, respectively.
Although these two enzymes share very high sequence
homology, they have their own substrate preference. The
reaction proceeds via a two-step process; the first
ATP-dependent step forms the substrate-AMP intermediate,
while the second step forms the acyl-CoA ester, releasing
the AMP. Aromatic compounds represent the second most
abundant class of organic carbon compounds after
carbohydrates. Some bacteria can use benzoic acid or
benzenoid compounds as the sole source of carbon and
energy through degradation. Benzoate CoA ligase and
4-hydroxybenzoate-Coenzyme A ligase are key enzymes of
this process.
Length = 506
Score = 93.2 bits (232), Expect = 1e-19
Identities = 104/514 (20%), Positives = 207/514 (40%), Gaps = 62/514 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E N+ L++ G ++ + + L+ + PE+ + GA K+G + INT L
Sbjct: 34 GELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIKIGAVPVPINTLLTPDD 93
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLDETKPDLPNLSDLMKTTPASE 627
+ ++ +++ +++S + ++ + P ++ + ++ P + + L+ T A+E
Sbjct: 94 YRYYLNDSRARVLVISEELWEVLKPALQKDPHLRHVIVVGGAGPGALSYAQLIAT--AAE 151
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAI-----MPNFKVLLGGQVGKHLLSLGSGDVIY 682
+ D ++Y+SG+TG PK + M V L + DV++
Sbjct: 152 ELEAAATSADDMAFWLYSSGSTGRPKGVVHLHHDMLVTAEAYAKNV----LGITEDDVVF 207
Query: 683 NCLPMYHSAG---GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY 739
+ ++ + G GL P + +++ + + + F +YK ++ G Y
Sbjct: 208 SAAKLFFAYGLGNGL--YFPLSVGATTVLMPERPTPDAVFATIERYK--PTVFFGVPTLY 263
Query: 740 --LLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
+LA+ E + + G + +I ++ + F + I++ G+TE + +
Sbjct: 264 AAMLAAPEKPERDLSSLRLCVSAGEALPAEIGYRWKELFGL-EILDGIGSTE--MLHIFL 320
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQS 855
N GAV T PV + LV D IGE+
Sbjct: 321 SNRPGAVK-----YGTSGKPVPGYEVKLV------DEDGEEV-------ADGEIGELWVR 362
Query: 856 DPS--RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
S ++ +K +++ + + GDKY+ DE GY ++ R+ D +
Sbjct: 363 GDSSAAGYWNRREK--TRETFVGEWTRTGDKYY-------RDEDGYYWYCGRSDDMLKVS 413
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV--DTSNQVDLKL---LVQ 968
G VS EVE + ++ E V G + D DG A V Q +L L
Sbjct: 414 GIWVSPFEVEDALLQHPAVLEAAVVGAE--DEDGLTKPKAFVVLKDGYQPSPELETELKD 471
Query: 969 GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ L Y P ++ + + T T KI++ +L
Sbjct: 472 FVKDKLAPYKYPRWIEFVDELPKTATGKIQRFKL 505
Score = 50.0 bits (120), Expect = 6e-06
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 137 RPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAK 196
R + Y+ D + T ++ E N+ L++ G ++ + + L+ + PE+ + GA K
Sbjct: 18 RGDKIALYYDDGSLTYGELQEEVNRWGNALRELGIERENRVLLILLDTPEFPTAFWGAIK 77
Query: 197 LGVISKLSN 205
+G + N
Sbjct: 78 IGAVPVPIN 86
>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated.
Length = 533
Score = 93.4 bits (233), Expect = 2e-19
Identities = 77/333 (23%), Positives = 134/333 (40%), Gaps = 39/333 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++E +N++A L G GD + + NR EYV LGA K + +N +
Sbjct: 32 AELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKARAVPVNVNYRYVEDE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLS---DLMKTT 623
L + + + A++ + P + + +P ++ ++ D + DL + +
Sbjct: 92 LRYLLDDSDAVALVYEREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAA 151
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM----PNFKVLLGGQV---GKHLLSL- 675
+ E E + D L +YT GTTG+PK +M F+VLLGG+ G+ +
Sbjct: 152 GSPERDFGER--SPDDLYLLYTGGTTGMPK-GVMWRQEDIFRVLLGGRDFATGEPIEDEE 208
Query: 676 --------GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRDCAKY 725
G G + P+ H G AL G ++ + +F A +R +
Sbjct: 209 ELAKRAAAGPGMRRFPAPPLMH-GAGQWAAFAALFSGQTVVLLPDVRFDADEVWRTIERE 267
Query: 726 KCNAGIYIGE-MCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK-RFHVQ----TI 779
K N +G+ M R LL + E+ Y + I G G +++ VK +
Sbjct: 268 KVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASG--GALFSPSVKEALLELLPNVVL 325
Query: 780 IEFYGATEGNANLVNMDNTEGAVGIIPTLLPTF 812
+ G++E A G + T P F
Sbjct: 326 TDSIGSSETGFGGSGT----VAKGAVHTGGPRF 354
Score = 53.0 bits (128), Expect = 7e-07
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+ D T +++E +N++A L G GD + + NR EYV LGA K
Sbjct: 17 PDRVALVCGDRRLTYAELEERANRLAHYLIAQGLGPGDHVGIYARNRIEYVEAMLGAFKA 76
Query: 198 GVI 200
+
Sbjct: 77 RAV 79
>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated.
Length = 488
Score = 90.3 bits (224), Expect = 1e-18
Identities = 117/524 (22%), Positives = 202/524 (38%), Gaps = 98/524 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++D ++A +L+ G G+ LA++ N V + A++G I +N L
Sbjct: 26 AELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAIYVPLNWRL---- 81
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET----KPDLPNLSDLMKTTP 624
SA E++A+ + + +L L D+ + D+ +L+ + +
Sbjct: 82 ---------------SA---SELDALLQD-AEPRLLLGDDAVAAGRTDVEDLAAFIASAD 122
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMP---------NFKVLLGGQVGKHLLSL 675
A E + + L ++TSGT+G PK ++ NF VL G+V H L
Sbjct: 123 ALEPADTPSIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVL--GRVDAHSSFL 180
Query: 676 GSGDVIYNCLPMYHSAGGLIGTI-PALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG 734
PM+H GLI ++ P L +G SI + F Y
Sbjct: 181 CDA-------PMFHII-GLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALGITHYFC 232
Query: 735 --EMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGN 789
+M + A +A + + G DI + ++ +G +E
Sbjct: 233 VPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPM---VDGFGMSEAG 289
Query: 790 ------ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYN 843
+ + GA GI P +Q +V++Q D C
Sbjct: 290 TVFGMSVDCDVIRAKAGAAGI----------PTPTVQTRVVDDQG-ND--------CPAG 330
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
P GE+ P+ GY + ++ + GD +F +GD+ D G+ +
Sbjct: 331 VP----GELLLRGPNL-SPGYWRRPQATARAFT-----GDGWFRTGDIARRDADGFFWVV 380
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLD---GRAGMIAIV-DTSN 959
DR D + GENV E+EA ++ + E V G+ D G G +AIV
Sbjct: 381 DRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMA----DAQWGEVGYLAIVPADGA 436
Query: 960 QVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+DL+ + L L Y P +R++ A+ T + K++K +L+
Sbjct: 437 PLDLERIRSHLSTRLAKYKVPKHLRLVDALPRTASGKLQKARLR 480
Score = 36.7 bits (85), Expect = 0.068
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
WT ++D ++A +L+ G G+ LA++ N V + A++G I
Sbjct: 23 WTYAELDALVGRLAAVLRRRGCVDGERLAVLARNSVWLVALHFACARVGAI 73
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein
synthetase (also called 2-acylglycerophosphoethanolamine
acyltransferase, Aas). Acyl-acyl carrier protein
synthase (Aas) is a membrane protein responsible for a
minor pathway of incorporating exogenous fatty acids
into membrane phospholipids. Its in vitro activity is
characterized by the ligation of free fatty acids
between 8 and 18 carbons in length to the acyl carrier
protein sulfydryl group (ACP-SH) in the presence of ATP
and Mg2+. However, its in vivo function is as a
2-acylglycerophosphoethanolamine (2-acyl-GPE)
acyltransferase. The reaction occurs in two steps: the
acyl chain is first esterified to acyl carrier protein
(ACP) via a thioester bond, followed by a second step
where the acyl chain is transferred to a
2-acyllysophospholipid, thus completing the
transacylation reaction. This model represents the
C-terminal domain of the enzyme, which belongs to the
class I adenylate-forming enzyme family, including
acyl-CoA synthetases.
Length = 489
Score = 89.6 bits (223), Expect = 2e-18
Identities = 102/497 (20%), Positives = 204/497 (41%), Gaps = 55/497 (11%)
Query: 519 ARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKS 578
+R+++ K+G+ + +M + L G + ++N ++ L +
Sbjct: 21 SRLIKKLT-KEGENIGIMLPSSVAGALANLALLLAGKVPVMLNFTAGEEGLRSACKQAGI 79
Query: 579 KAIIVSALYYP--EIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT------TPASEVKP 630
K +I S + ++E + + V++ L++ + + + +D +K PA
Sbjct: 80 KTVITSRAFLEKLKLEGLVVLLEGVRIVYLEDLRAKI-SKADKLKAFLAAKLPPALLRLF 138
Query: 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHS 690
+ D + ++TSG+ GLPK ++ + +L ++ L + DV+ LP++H+
Sbjct: 139 LAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQIAAVIDLNTEDVLLGALPLFHA 198
Query: 691 AGGLIGTIPALILGSSIAIRTKFSASNYFRDCAK--YKCNAGIYIGE--MCRYLLASKES 746
G + + L+ G + + + + A+ A I G R +
Sbjct: 199 FGLTVTLLLPLLTGLRVV--YYPNPLDA-KKIAELIRDYKATILCGTPTFLRGYARNAHP 255
Query: 747 EADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANL-VN--MDNTEG 800
E S ++++ G + F ++F ++ I+E YGATE + + VN M N G
Sbjct: 256 EDFSS---LRLVVAGAEKLPEATRELFEEKFGIR-ILEGYGATECSPVISVNTPMGNKPG 311
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
VG P+ I+ +V P+T + G+++ ++ P+
Sbjct: 312 TVG----------RPLPGIEVRIV------SPETH--EELPIGEGGLLL--VR--GPNV- 348
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
GY + +E + V GD ++ +GD+ +DE G+L R + GE VS
Sbjct: 349 MSGYLNNEEKTSE----VEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMVSLT 404
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARP 980
VE +S+ LP + V+V D ++ + T + +L +A LP A P
Sbjct: 405 AVEELLSEILPE-DSLHAAVEVPDEKKGEKIVLLTTTEDLDPEELNAILREAGLPNLAVP 463
Query: 981 LFVRIMKAIEMTGTFKI 997
+ + I + G+ K
Sbjct: 464 RKILHVDEIPLLGSGKT 480
>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated.
Length = 567
Score = 88.9 bits (221), Expect = 4e-18
Identities = 119/542 (21%), Positives = 212/542 (39%), Gaps = 90/542 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE S++ A +L+ G GD +A+ N P++ V+ G KLG + ++ ++
Sbjct: 62 AELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGILKLGAVHVPVSPLFREHE 121
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRE-----------------SIPDVKL-FLLDETK 610
L + ++ ++ ++ P +E +R + P + L L +
Sbjct: 122 LSYELNDAGAEVLLALDQLAPVVEQVRAETSLRHVIVTSLADVLPAEPTLPLPDSLRAPR 181
Query: 611 PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVG 669
DL+ A P D+L + YT GTTG+PK + ++
Sbjct: 182 LAAAGAIDLLPALRACTAPVPLPPPALDALAALNYTGGTTGMPKGCEHTQ-RDMVYTAAA 240
Query: 670 KHLLSL--GSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727
+ +++ G V + LP + AG G + L G+++ + ++ A + +Y+
Sbjct: 241 AYAVAVVGGEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRV 300
Query: 728 NAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK--------RFHVQT- 778
+ + + L+ A+Y ++ + V FVK R+ T
Sbjct: 301 TRTVMLVDNAVELMDHPRF-AEYDLSSLRQVRV-------VSFVKKLNPDYRQRWRALTG 352
Query: 779 --IIEF-YGATEGN-ANLVNMDNTEGAVGIIPTLL--PTFLH-PVA-----IIQFDLVEN 826
+ E +G TE + + T G LL P F+ PV I F+ E
Sbjct: 353 SVLAEAAWGMTETHTCDTF----TAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGEL 408
Query: 827 QPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYF 886
P+ GEI PS GY +K E+ + L D +
Sbjct: 409 LPLGAE-----------------GEIVVRTPSL-LKGYWNKPEATAEALR------DGWL 444
Query: 887 LSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV-GDL 945
+GD+ +DE G+L++ R + + G +V EVEA + ++ P V G V G
Sbjct: 445 HTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQH-P----AVLGSAVVGRP 499
Query: 946 DGRAGMIAI----VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001
D G + + + + L N+ Y P +RI+ A+ MT T K++K
Sbjct: 500 DPDKGQVPVAFVQLKPGADLTAAALQAWCRENMAVYKVPE-IRIVDALPMTATGKVRKQD 558
Query: 1002 LQ 1003
LQ
Sbjct: 559 LQ 560
Score = 43.9 bits (104), Expect = 4e-04
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 135 KRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
+ RP P F T ++DE S++ A +L+ G GD +A+ N P++ V+ G
Sbjct: 44 RERPQRPAIIFYGHVITYAELDELSDRFAALLRQRGVGAGDRVAVFLPNCPQFHIVFFGI 103
Query: 195 AKLGVI 200
KLG +
Sbjct: 104 LKLGAV 109
>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated.
Length = 496
Score = 88.0 bits (218), Expect = 7e-18
Identities = 110/507 (21%), Positives = 206/507 (40%), Gaps = 59/507 (11%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ EY +K+A L + KKG+ +A++ +N EY+ + AK+ I+ +N L +
Sbjct: 32 QLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECIAVPLNIRLTENE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+ + + + V + ++++ ++ + +L ++ + V
Sbjct: 92 LIFQLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVISIT-------SLKEIEDRKIDNFV 144
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ +E S S + YTSGTTG PK A++ + + L D LP++
Sbjct: 145 EKNE----SASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAIDLTMHDRSIVLLPLF 200
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-ASKESE 747
H G + P L G I + KF + K+K + + + + L+ SK
Sbjct: 201 HIGGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFET 260
Query: 748 ADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGA--- 801
+ V+ G ++ +F+ R + + +G TE + V M + E A
Sbjct: 261 TNLQS--VRWFYNGGAPCPEELMREFIDRGFL--FGQGFGMTE-TSPTVFMLSEEDARRK 315
Query: 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHF 861
VG I PV ++L+ D K +GE+ P+
Sbjct: 316 VGSIG-------KPVLFCDYELI------DENKN-----KVEVGE--VGELLIRGPNV-M 354
Query: 862 YGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTME 921
Y ++ ++ ++ ++ D + +GD+ +DE G++Y R + GEN+ +E
Sbjct: 355 KEYWNRPDATEETIQ------DGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLE 408
Query: 922 VEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV----DTSNQVDLKLLVQGLDANLPAY 977
VE I+K E V G + + G I I +S+ + K +++ L Y
Sbjct: 409 VEQVINKLSDVYEVAVVGRQ----HVKWGEIPIAFIVKKSSSVLIEKDVIEHCRLFLAKY 464
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
P + +K + T KI+K QL N
Sbjct: 465 KIPKEIVFLKELPKNATGKIQKAQLVN 491
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 146 QDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++E T KQ+ EY +K+A L + KKG+ +A++ +N EY+ + AK+ I
Sbjct: 24 EEEEMTYKQLHEYVSKVAAYLIYELNVKKGERIAILSQNSLEYIVLLFAIAKVECI 79
>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is a required
step before free fatty acids can participate in most
catabolic and anabolic reactions.
Length = 350
Score = 84.2 bits (209), Expect = 3e-17
Identities = 79/386 (20%), Positives = 140/386 (36%), Gaps = 70/386 (18%)
Query: 643 IYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAG-GLIGTIPAL 701
IYTSG+TG PK ++ + + G + L L D I LP G + T A
Sbjct: 8 IYTSGSTGEPKGVMLSHRNLTAGARSIAQYLELTEDDRILAVLPFSFDYGLSQLLT--AF 65
Query: 702 ILGSSIAIRTKFS-ASNYFRDCAKYKCN--AG---IYIGEMCRYLLASKESEADYSHQVV 755
+G ++ + ++F+ + + AK + AG + L + A +
Sbjct: 66 RVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWA------QLLRLDPLAREDFPSL 119
Query: 756 KMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTF 812
+ + G + + + F + YG TE + T+
Sbjct: 120 RYLTNAGGALPAKTILQLRRAFPDAKLFSMYGLTEAFRS-------------------TY 160
Query: 813 LHPVAIIQFDLVENQP-------------IRDPKTGLCIRCKYNQPGMII---GEIKQSD 856
L P + ++ +P + D RC + G ++ + +
Sbjct: 161 LPP------EELDRRPDSIGKAIPNVELWVVDEDGN---RCAPGEVGELVHRGANVMK-- 209
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
GY + E+ + L PG+ +GD++ MDE GYLYF R D + +G
Sbjct: 210 ------GYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYR 263
Query: 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPA 976
VS E+E I + E V GV L + + +D K L++ +LP
Sbjct: 264 VSPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHCRKHLPN 323
Query: 977 YARPLFVRIMKAIEMTGTFKIKKIQL 1002
Y P + + ++ K+ + L
Sbjct: 324 YMVPAEIVFVDSLPKNANGKVDRSAL 349
>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of
AAE_MA like. MACS catalyzes the two-step activation of
medium chain fatty acids (containing 4-12 carbons). The
carboxylate substrate first reacts with ATP to form an
acyl-adenylate intermediate, which then reacts with CoA
to produce an acyl-CoA ester. This family of MACS enzymes
is found in archaea and bacteria. It is represented by
the acyl-adenylating enzyme from Methanosarcina
acetivorans (AAE_MA). AAE_MA is most active with
propionate, butyrate, and the branched analogs:
2-methyl-propionate, butyrate, and pentanoate. The
specific activity is weaker for smaller or larger acids.
Length = 537
Score = 84.4 bits (209), Expect = 1e-16
Identities = 114/529 (21%), Positives = 194/529 (36%), Gaps = 77/529 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +YSNK A + G KGD + L + R E+ L K+G I+ L +
Sbjct: 51 GDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAIAIPATHMLTAKD 110
Query: 569 LVHSISTVKSKAIIVSA--LYYPEIEAIRESIP-DVKLFLLDETKPD-LPNLSDLMKTTP 624
+V+ I K I+ I+ L L+ + P+ + ++
Sbjct: 111 IVYRIEAAGIKMIVCIGEDGVPEHIDEAAPECGSPTLLVLVGDPVPEGWIDFDKEIENAS 170
Query: 625 ASEVKPSEPLQTS--DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVI 681
+P+ T D LL +TSGTTG+PK + + LG V K+ ++ G +
Sbjct: 171 PDFERPTGNDATCNDDILLVYFTSGTTGMPKM-VEHDHTYPLGHIVTAKYWQNVKEGGLH 229
Query: 682 YN--------CLPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRDCAKYKCNAGI 731
+ G L G I G+++ + KF N KY
Sbjct: 230 LTVADTGWGKAV-----WGKLYGQ---WIAGAAVFVYDYDKFDPKNLLEKIEKYG----- 276
Query: 732 YIGEMC------RYLLASKESEADYS---HQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF 782
+ C R+L+ S+ D S + G + +++ F K ++E
Sbjct: 277 -VTTFCAPPTIYRFLIKEDLSKYDLSSLRYCTTA--GEPLNPEVFNTF-KEKTGIKLMEG 332
Query: 783 YGATEGN---ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839
+G TE A M+ G++G P+ + + II D
Sbjct: 333 FGQTETTLTIATFPWMEPKPGSMG-----KPSPGYDIDIIDPDGKS-------------- 373
Query: 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
C+ + G I+ P F GY E ++ D Y+ +GD MDE GY
Sbjct: 374 CEVGEEGEIVIRTSDGKPLGLFMGYYRDPERTAEVWH------DGYYHTGDTAWMDEDGY 427
Query: 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSN 959
L+F R D + G + EVE+ + ++ E V GV + G+ IV T
Sbjct: 428 LWFVGRADDLIKSSGYRIGPFEVESALIQHPAVLECAVTGVP-DPIRGQVVKATIVLTKG 486
Query: 960 QVDLKLLVQGLD----ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
+ L + L Y P + + + T + KI++++++
Sbjct: 487 YEPSEELKKELQDHVKKVTAPYKYPRIIEFVDELPKTISGKIRRVEIRE 535
Score = 36.2 bits (84), Expect = 0.098
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
+T + +YSNK A + G KGD + L + R E+ L K+G I
Sbjct: 47 IFTFGDLKDYSNKAANFFKALGIGKGDTVMLTLKRRYEFWFSMLALHKIGAI 98
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 85.5 bits (212), Expect = 1e-16
Identities = 86/372 (23%), Positives = 148/372 (39%), Gaps = 26/372 (6%)
Query: 674 SLGSGDVIYNCL-PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIY 732
+L D +Y CL P++H +G L+ A++ GS IA+ + ++ +Y Y
Sbjct: 642 ALDRRDTVY-CLTPLHHESGLLVSLGGAVVGGSRIALSRGLDPDRFVQEVRQYGVTVVSY 700
Query: 733 IGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANL 792
M R ++ +H V IG GM +W + V+ F ++EF+ T+G A L
Sbjct: 701 TWAMLREVVDDPAFVLHGNHPVRLFIGSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVL 760
Query: 793 VNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852
N+ + +G LP V + +D + I + G R + N+ G+++
Sbjct: 761 ANVSGAK--IGSKGRPLPG-AGRVELAAYDPEHDL-ILEDDRGFVRRAEVNEVGVLLARA 816
Query: 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
+ G D S K+ VF P D + + + D+ G + DR G R
Sbjct: 817 R---------GPIDPTASVKR---GVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRT 864
Query: 913 KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVD--TSNQVDLKLLVQGL 970
V T V + + YGV+VG GR +A V + L + L
Sbjct: 865 ARGPVYTEPVTDALGRIGGVDLAVTYGVEVG---GRQLAVAAVTLRPGAAITAADLTEAL 921
Query: 971 DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYV-RQGSEFVRMTP 1029
A+LP P V ++ I ++ T++ L+ G P Y + + + R+TP
Sbjct: 922 -ASLPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI-PKPGRQAWYFDPETNRYRRLTP 979
Query: 1030 NTYEKIMNDQPG 1041
++
Sbjct: 980 AVRAELTGGHRR 991
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. MACS enzymes are
localized to mitochondria.
Length = 440
Score = 82.5 bits (204), Expect = 3e-16
Identities = 110/516 (21%), Positives = 198/516 (38%), Gaps = 99/516 (19%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E S ++A +L D G K GD +A + PE V L ++G I + T +
Sbjct: 4 AELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAIYVPLFTAFGPKA 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + + +K ++ +A A R + D
Sbjct: 64 IEYRLGHSGAKVVVTNA-------ANRGKLDD---------------------------- 88
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
D +YTSGTTGLPK +P + ++ + L DV +N
Sbjct: 89 ---------DLFAQMYTSGTTGLPKGVPVPLNALAAFYAYMRYAIDLRDDDVFWNIADPG 139
Query: 689 HSAGGLIGTIPALILG-SSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
+ G L +G +++ + F+A N + + R L+A+
Sbjct: 140 WAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLMAAGADA 199
Query: 748 ADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATE-----GNANLVNMDNTE 799
A +++ G + ++ F V TI + YG TE GN + + +
Sbjct: 200 AARIKLKLRVASSAGEPLNPEVVRWFQANLGV-TIHDHYGQTETGMPVGNHHALAHEVRA 258
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
G++G LP + +A++ D QP+ D +PG + ++ S
Sbjct: 259 GSMG-----LPLPGYRIAVLDDD---GQPLAD-----------GEPGQLAIDVASSPL-L 298
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY D E +++ +++++GD++ DE GY +F R D G +
Sbjct: 299 WFSGYWDDPEKTAELIA------GRWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGP 352
Query: 920 MEVEATISKYLPYTEFTVYGVK-----------VGDLDGRAGMIAIVDTSNQVDLKLLVQ 968
+VE+ + ++ E V GV V +G AG + + +L+L V+
Sbjct: 353 FDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEGYAGSDELAE-----ELQLFVK 407
Query: 969 GLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
L A+A P V + A+ T + KI++ L+
Sbjct: 408 ---KRLSAHAYPREVEFVPALPKTPSGKIQRFLLRQ 440
Score = 40.5 bits (95), Expect = 0.004
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
+ ++ E S ++A +L D G K GD +A + PE V L ++G I
Sbjct: 2 SYAELREQSARVANLLADLGVKPGDRVAGLLPRTPELVVAILATWRVGAI 51
>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated.
Length = 528
Score = 82.4 bits (204), Expect = 4e-16
Identities = 122/534 (22%), Positives = 201/534 (37%), Gaps = 91/534 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ID + +A L G +KGD + + N + A +LG + + TN ++ P
Sbjct: 36 REIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESMFAAFRLGAV--WVPTNFRQTP 93
Query: 569 --LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
+ + ++A+I A + A+R + PD+ + + L+ +
Sbjct: 94 DEVAYLAEASGARAMICHADFPEHAAAVRAASPDLTHVVAIGGARAGLDYEALVARHLGA 153
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG----KHLLSLGSG---- 678
V + + D + +TSGTTG PKAA VL GQ+ HL L G
Sbjct: 154 RVANAA-VDHDDPCWFFFTSGTTGRPKAA------VLTHGQMAFVITNHLADLMPGTTEQ 206
Query: 679 DVIYNCLPMYHSAG--GLIGTI--PALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG 734
D P+ H AG L A +L S +F + + +++ +
Sbjct: 207 DASLVVAPLSHGAGIHQLCQVARGAATVLLPS----ERFDPAEVWALVERHRVTNLFTVP 262
Query: 735 EMCRYLLASKESEADYSHQVVKMI---GVGM-RGDIWAKFVKRFHVQTIIEFYGATEGNA 790
+ + +L + Y H ++ + G M R D K V +++++G E
Sbjct: 263 TILK-MLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGKV--LVQYFGLGEVTG 319
Query: 791 NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMII- 849
N+ T+LP LH E+ P D + G C + + GM +
Sbjct: 320 NI--------------TVLPPALHD--------AEDGP--DARIG---TCGFERTGMEVQ 352
Query: 850 --------------GEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMD 895
GEI P+ F GY + E+ K F+ G +F +GD+ +D
Sbjct: 353 IQDDEGRELPPGETGEICVIGPAV-FAGYYNNPEANAK----AFRDG--WFRTGDLGHLD 405
Query: 896 ELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG----M 951
G+LY R D Y G NV E+E + + +E V GV D G
Sbjct: 406 ARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVP----DPVWGEVGVA 461
Query: 952 IAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
+ + VD L+ LD + Y P A+ +G KI K ++ E
Sbjct: 462 VCVARDGAPVDEAELLAWLDGKVARYKLPKRFFFWDALPKSGYGKITKKMVREE 515
Score = 39.3 bits (92), Expect = 0.012
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 132 KSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191
++ +R P+ + D +WT ++ID + +A L G +KGD + + N +
Sbjct: 15 QAARRFPDRIALVWGDRSWTWREIDARVDALAAALAARGVRKGDRILVHSRNCNQMFESM 74
Query: 192 LGAAKLGVISKLSN-------VVWLAQLLGKKMV 218
A +LG + +N V +LA+ G + +
Sbjct: 75 FAAFRLGAVWVPTNFRQTPDEVAYLAEASGARAM 108
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called
cyclohex-1-ene-1-carboxylate:CoA ligase).
Cyclohexanecarboxylate-CoA ligase activates the aliphatic
ring compound, cyclohexanecarboxylate, for degradation.
It catalyzes the synthesis of cyclohexanecarboxylate-CoA
thioesters in a two-step reaction involving the formation
of cyclohexanecarboxylate-AMP anhydride, followed by the
nucleophilic substitution of AMP by CoA.
Length = 437
Score = 81.1 bits (201), Expect = 8e-16
Identities = 97/510 (19%), Positives = 189/510 (37%), Gaps = 95/510 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D+ ++++A L + G + GDV+A N E+V V+L A++G + I +++
Sbjct: 5 GELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVINPIVPIYRERE 64
Query: 569 LVHSISTVKSKAIIVSALY----YPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTP 624
L + +++ + V + Y + PD + LL
Sbjct: 65 LGFILRQARARVLFVPDEFRGFDYAAM-------PD-DVALL------------------ 98
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+YTSGTTG PK + + +L + L L DV+
Sbjct: 99 ------------------LYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGLTPDDVVLMP 140
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGI----YIGEMCRYL 740
P+ H G L G L+LG+++ ++ ++ + ++ + ++ ++
Sbjct: 141 SPLAHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLA-- 198
Query: 741 LASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFH---VQTIIEFYGATEGNANLVNMD 796
A+ + D +V G + + +R ++ YG TE V
Sbjct: 199 -AADAAGPDLPSLRVFLCGG----APVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTP 253
Query: 797 NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG---LCIRCKYNQPGMIIGEIK 853
+ T PV ++ +V++ P L +R P + +G
Sbjct: 254 DDPDDK-----RAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVR----GPQLFLG--- 301
Query: 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
Y D ++ + + D +F +GD+ +D GYL R D
Sbjct: 302 ----------YLDPPDNTEAFTD------DGWFRTGDLGRLDADGYLRITGRKKDIIIRG 345
Query: 914 GENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA- 972
GEN+S E+E + ++ E V + L R + + + L L + L A
Sbjct: 346 GENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ 405
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L P + ++ A+ T + K++K +L
Sbjct: 406 GLAKQKWPERLEVVDALPRTPSGKVQKFEL 435
Score = 34.1 bits (79), Expect = 0.38
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
T ++D+ ++++A L + G + GDV+A N E+V V+L A++G +
Sbjct: 3 TYGELDDAADRLAAALAELGVRPGDVVAFQLPNWWEFVVVYLACARIGAVI 53
>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional.
Length = 537
Score = 81.3 bits (201), Expect = 1e-15
Identities = 114/507 (22%), Positives = 183/507 (36%), Gaps = 57/507 (11%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++DE S+ +A LQ + V+ +MC N +V L A ++G L+NT+ L
Sbjct: 73 ELDERSDALAAALQALPIGEPRVVGIMCRNHRGFVEALLAANRIGADILLLNTSFAGPAL 132
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
++ +I + ++ P ++ T D +++ A +
Sbjct: 133 AEVVTREGVDTVIYDEEFSATVDRALADCPQATR-IVAWTDEDHDLTVEVLIAAHAGQRP 191
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS---LGSGDVIYNCLP 686
+ LL TSGTTG PK A G K +L + + P
Sbjct: 192 EPTGRKGRVILL---TSGTTGTPKGARRSGPG---GIGTLKAILDRTPWRAEEPTVIVAP 245
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-ASKE 745
M+H A G + A L +I R +F +++ + M ++ E
Sbjct: 246 MFH-AWGFSQLVLAASLACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAE 304
Query: 746 SEADYSHQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
YS + ++ G MR D+ F+ +F I Y ATE
Sbjct: 305 VRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFG-DVIYNNYNATE--------------A 349
Query: 803 GIIPTLLPTFL--HPVAIIQFDLVENQPIRDPKTGLCIRC---KYNQ-PGMIIGEIKQSD 856
G+I T P L P + R P G IR + + P +G I +
Sbjct: 350 GMIATATPADLRAAP----------DTAGR-PAEGTEIRILDQDFREVPTGEVGTIFVRN 398
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
F GY S K D + SGD+ +DE G L+ R + GEN
Sbjct: 399 -DTQFDGYTSG--STKDFH-------DGFMASGDVGYLDENGRLFVVGRDDEMIVSGGEN 448
Query: 917 VSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPA 976
V +EVE T++ + E V GV R ++ + L Q + NL
Sbjct: 449 VYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRDNLAN 508
Query: 977 YARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
Y P + ++ + T KI + +LQ
Sbjct: 509 YKVPRDIVVLDELPRGATGKILRRELQ 535
Score = 37.0 bits (86), Expect = 0.053
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
M S F + +R P+ P + T T +++DE S+ +A LQ + V+
Sbjct: 38 MRREGMGPTSGFAIAAQRCPDRPGLIDELGTLTWRELDERSDALAAALQALPIGEPRVVG 97
Query: 179 LMCENRPEYVGVWLGAAKLG 198
+MC N +V L A ++G
Sbjct: 98 IMCRNHRGFVEALLAANRIG 117
>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional.
Length = 511
Score = 80.9 bits (200), Expect = 1e-15
Identities = 100/448 (22%), Positives = 157/448 (35%), Gaps = 87/448 (19%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++DE SN++A + + G K+GD +A+ EN Y+ V A + G+ +N++L
Sbjct: 28 RELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVCWAAERSGLYYTCVNSHLTPAE 87
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL---DETKPDLPNLSDLMKTTPA 625
+ + ++A+I SA A+ + P V+ L+ D ++ + PA
Sbjct: 88 AAYIVDDSGARALITSAAKLDVARALLKQCPGVRHRLVLDGDGELEGFVGYAEAVAGLPA 147
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ-----VGKHLLSLGSGDV 680
+ + E L T +Y+SGTTG PK P + + L S V
Sbjct: 148 TPI-ADESLGT----DMLYSSGTTGRPKGIKRPLPEQPPDTPLPLTAFLQRLWGFRSDMV 202
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEM-CRY 739
+ P+YHSA + + LG ++ + F A Y +Y + M R
Sbjct: 203 YLSPAPLYHSA-PQRAVMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRM 261
Query: 740 LLASKESEADYSHQVVK----------------MIGVGMRGDIWAKFVKRFHVQTIIEFY 783
L +E Y ++ MI D W I E+Y
Sbjct: 262 LKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMI------DWWGP--------IIHEYY 307
Query: 784 GATEGNANLVNMDNTE------GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
ATEG ++E G VG + LH I D
Sbjct: 308 AATEG--LGFTACDSEEWLAHPGTVG---RAMFGDLH--------------ILDDDGAEL 348
Query: 838 IRCKYNQPGMIIGEI--KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMD 895
P G I + P + A E++ P + GD+ +D
Sbjct: 349 -------PPGEPGTIWFEGGRPFEYLNDPAKTAEAR--------HPDGTWSTVGDIGYVD 393
Query: 896 ELGYLYFKDRTGDTYRWKGENVSTMEVE 923
E GYLY DR G N+ E E
Sbjct: 394 EDGYLYLTDRAAFMIISGGVNIYPQEAE 421
Score = 42.8 bits (101), Expect = 0.001
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 134 VKRRPNAPCY--YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW 191
+ P+ P E T +++DE SN++A + + G K+GD +A+ EN Y+ V
Sbjct: 7 AQTTPDKPAVIMASTGEVVTYRELDERSNRLAHLFRSLGLKRGDHVAIFMENNLRYLEVC 66
Query: 192 LGAAKLG 198
A + G
Sbjct: 67 WAAERSG 73
>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed.
Length = 547
Score = 79.8 bits (197), Expect = 3e-15
Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 8/226 (3%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +D ++++A L G + GD +A E+ ++L K+G +S + + ++
Sbjct: 53 SALDHAASRLANWLLAKGIEPGDRVAFQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAE 112
Query: 569 LVHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVK-LFLLDETKPDLPNLSDLMKT 622
LV ++ ++K L+ I ++ +P ++ + +D+ P +LS L +
Sbjct: 113 LVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKLAPATSSLS-LSQI 171
Query: 623 TPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVI 681
E + D L + +TSGT GLPK ++ + +L + L+L DV
Sbjct: 172 IADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNLTWQDVF 231
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727
P+ H+ G L G ++G+ + F+ + +C
Sbjct: 232 MMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRC 277
Score = 48.2 bits (115), Expect = 2e-05
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY D+ E + L+ + ++ SGD+ MDE GY+ R D GEN+S+
Sbjct: 392 FMGYLDEPELTARALDE-----EGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSR 446
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAG-----MIAIVDTSNQVDLKLLVQGL-DANL 974
EVE + ++ + V V D R G + + + + L+ +V +
Sbjct: 447 EVEDILLQHPKIHDACV----VAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRV 502
Query: 975 PAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
Y P + ++ + T + KI+K L+ +
Sbjct: 503 AKYKYPEHIVVIDKLPRTASGKIQKFLLRKD 533
Score = 38.2 bits (89), Expect = 0.028
Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDET---WTIKQIDEYSNKIARILQDDGFKKGDVLA 178
+ +L ++++ + P+ D +T +D ++++A L G + GD +A
Sbjct: 21 GDASLADYWQQTARAMPDKI--AVVDNHGASYTYSALDHAASRLANWLLAKGIEPGDRVA 78
Query: 179 LMCENRPEYVGVWLGAAKLGVIS-------KLSNVVWLAQLLGKKM---------VHFKG 222
E+ ++L K+G +S + + +VW+ KM
Sbjct: 79 FQLPGWCEFTIIYLACLKVGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVD 138
Query: 223 IILEL-HRLMKLNKEIGVD 240
+IL L ++L +L + +GVD
Sbjct: 139 LILPLQNQLPQLQQIVGVD 157
>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase
(MACS or ACSM). MACS catalyzes the two-step activation
of medium chain fatty acids (containing 4-12 carbons).
The carboxylate substrate first reacts with ATP to form
an acyl-adenylate intermediate, which then reacts with
CoA to produce an acyl-CoA ester. The acyl-CoA is a key
intermediate in many important biosynthetic and
catabolic processes. MACS enzymes are localized to
mitochondria. Two murine MACS family proteins are found
in liver and kidney. In rodents, a MACS member is
detected particularly in the olfactory epithelium and is
called O-MACS. O-MACS demonstrates substrate preference
for the fatty acid lengths of C6-C12.
Length = 530
Score = 79.1 bits (195), Expect = 5e-15
Identities = 100/438 (22%), Positives = 182/438 (41%), Gaps = 60/438 (13%)
Query: 510 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ S K A +L G ++GD +A++ PE+ V + + G++ L +
Sbjct: 46 ELGSLSRKAANVLSGACGLQRGDRVAVILPRVPEWWLVNVACIRTGLVFIPGTIQLTAKD 105
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPAS 626
+++ + K+K I+ S P +++I P +K LL + ++ N +L+K AS
Sbjct: 106 ILYRLQASKAKCIVTSDELAPAVDSIASECPSLKTKLLVSEHSRDGWLNFKELLKE--AS 163
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDVIYNCL 685
++ + + +TSGTTG PK A + + LG +V G++ L L D+++N
Sbjct: 164 TEHTCVKTKSQEPMAIYFTSGTTGFPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNM- 222
Query: 686 PMYHSAGGLIGTIPAL----ILGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGEMCR- 738
G + I +L I G+ + + +F + +KY I C
Sbjct: 223 ---SDTGWIKAAIWSLFSPWIQGACVFVHHLPRFDPKVILQTLSKYP------ITTFCSA 273
Query: 739 ---YLLASKESEADYSHQVVKMIGVGMRGD-IWAKFVKRFHVQT---IIEFYGATEGN-- 789
Y + ++ Y + ++ G G+ + + ++++ QT + E YG TE
Sbjct: 274 PTVYRMLVQQDLTSYKFKSLRHCVTG--GEPLNPEVLEQWKAQTGLDLYEGYGQTETGLI 331
Query: 790 -ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMI 848
AN M G++G + + V II +N + P G I
Sbjct: 332 CANFKGMKIKPGSMG-----KASPPYDVQIID----DNGNVLPP----------GTEGDI 372
Query: 849 IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGD 908
+K + P F Y D E + GD ++++GD +MDE GY +F R D
Sbjct: 373 GIRVKPTRPFCLFSCYVDNPEKTAATIR-----GD-FYITGDRGIMDEDGYFWFVGRADD 426
Query: 909 TYRWKGENVSTMEVEATI 926
G + EVE+ +
Sbjct: 427 VINSSGYRIGPFEVESAL 444
Score = 32.1 bits (73), Expect = 2.0
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 128 SEFKKSVKRRPNAPCYYFQDET-----WTIKQIDEYSNKIARILQDD-GFKKGDVLALMC 181
++ +K+ KR PN P ++ + W+ +++ S K A +L G ++GD +A++
Sbjct: 16 ADKEKAGKRPPN-PALWWVNGKGDEVKWSFRELGSLSRKAANVLSGACGLQRGDRVAVIL 74
Query: 182 ENRPEYVGVWLGAAKLGVI 200
PE+ V + + G++
Sbjct: 75 PRVPEWWLVNVACIRTGLV 93
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 79.3 bits (196), Expect = 5e-15
Identities = 50/234 (21%), Positives = 81/234 (34%), Gaps = 19/234 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E +A L G GD +A+ NRPE+ L LG +S I + +
Sbjct: 49 RELYERVRALASGLLSLGIPAGDRVAIFAANRPEWAIADLAILALGAVSVPIYSTSTPEQ 108
Query: 569 LVHSISTVKSKAIIVSALYYP----EIEAIRESIP------DVKLFLLDETKPDLPNLSD 618
L + ++ +SK I V + + D+ ++ L D
Sbjct: 109 LAYILNESESKVIFVENQELLDLVLPVLEDCPKVVDLIVIIDLVREAVEAKALVLEVFPD 168
Query: 619 L--MKTTPASEVKPSEPLQTS-DSL-LYIYTSGTTGLPKAAIMPNFKVLL--GGQVGKHL 672
S D L IYTSGTTG PK ++ + LL + + L
Sbjct: 169 EGISLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVML-THRNLLAQVAGIDEVL 227
Query: 673 LSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
+G GD + + LP+ H L L + + K D + +
Sbjct: 228 PPIGPGDRVLSFLPLAHI-FERAFEGG-LALYGGVTVLFKEDPRTLLEDLKEVR 279
Score = 43.5 bits (103), Expect = 6e-04
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 116 TKRMAATNTTLVSEFKKSVKRRPNAPCYY------FQDETWTIKQIDEYSNKIARILQDD 169
A TL + VK RP+ ++ T+ +++ E +A L
Sbjct: 8 AWEDVAEIHTLPKRLAERVKDRPDGVALMYKELGGWEAITY--RELYERVRALASGLLSL 65
Query: 170 GFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
G GD +A+ NRPE+ L LG +S
Sbjct: 66 GIPAGDRVAIFAANRPEWAIADLAILALGAVS 97
Score = 32.7 bits (75), Expect = 1.2
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPYTEFTVYGVK 941
D +F +GD+ +DE GYL R + + G+N++ +E+ ++K + V G
Sbjct: 448 DGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-- 505
Query: 942 VGDLDGRAGMIAIV 955
D + ++A++
Sbjct: 506 ----DDKKFLVALI 515
>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 433
Score = 77.0 bits (190), Expect = 1e-14
Identities = 92/442 (20%), Positives = 155/442 (35%), Gaps = 123/442 (27%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ+ + SN++A L+ G ++GD + LM N PE L A KLG + T L
Sbjct: 4 AQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAVVIPATTLLTPAD 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L S K KAI+ DET+ D
Sbjct: 64 LRDRFSRGKPKAIVA-----------------------DETRAD---------------- 84
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
D +L +TSGTTGLPK + + +G + + L GD+ N
Sbjct: 85 ---------DPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQPGDIHLNI---- 131
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFR----DCAKY-----KCNAGIYIGEMCRY 739
S+ G K + S++F + + +A Y+G + ++
Sbjct: 132 -SSPGW----------------AKHAWSSFFAPWNAGATVFGINYPRFDARRYLGALEKF 174
Query: 740 LLAS------------KESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGA 785
+ + ++ A Y ++ + + G + ++ + K + + TI + YG
Sbjct: 175 GVTTFCAPPTVWRMFIQQDLAQYDVRLREAVSAGEPLNPEVIERVKKAWGL-TIRDGYGQ 233
Query: 786 TEGNANLVNM---DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842
TE A + N G++G P + V ++ E + I + + +
Sbjct: 234 TETTAMIGNSPGQKVKPGSMG-----RPLPGYRVVLLD---DEGKEIPVTEGEIALDLGD 285
Query: 843 NQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYF 902
G+ GY E Y+ +GD DE GYL+F
Sbjct: 286 RPIGL-------------MLGYMGDPEKTAAA------FRGGYYRTGDKAYRDEDGYLWF 326
Query: 903 KDRTGDTYRWKGENVSTMEVEA 924
R D ++ +S EVE+
Sbjct: 327 VGRADDVFKSSDYRISPFEVES 348
Score = 45.8 bits (109), Expect = 9e-05
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++ Q+ + SN++A L+ G ++GD + LM N PE L A KLG +
Sbjct: 1 YSYAQLSKRSNRVANFLRKHGVRRGDRVLLMLPNVPELWEAMLAAIKLGAV 51
>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 509
Score = 76.7 bits (189), Expect = 3e-14
Identities = 122/536 (22%), Positives = 197/536 (36%), Gaps = 94/536 (17%)
Query: 510 QIDEYSNKIARI---LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566
DE + + AR L G + GD +AL+ N + A +LG + +N + K
Sbjct: 13 SFDELAQRAARAAGGLAALGVRPGDCVALLMRNDFAFFEAAYAAMRLGAYAVPVNWHFKP 72
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP---NLSDLMKTT 623
+ + + + ++ +I A + + ++P L T P++ +S + T
Sbjct: 73 EEIAYILEDSGARVLIAHA---DLLHGLASALPAGVTVLSVPTPPEIAAAYRISPALLTP 129
Query: 624 PASEV---------KPSEPLQTSDSLLYIYTSGTTGLPK----AAIMPNFKVLLGGQVGK 670
PA + +P + IYTSGTTG PK AA P + Q+
Sbjct: 130 PAGAIDWEGWLAQQEPYDGPPVPQPQSMIYTSGTTGHPKGVRRAAPTPE-QAAAAEQMRA 188
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG 730
+ L G P+YHSA G + A LG + ++ +F + +++
Sbjct: 189 LIYGLKPGIRALLTGPLYHSAPNAYG-LRAGRLGGVLVLQPRFDPEELLQLIERHRITHM 247
Query: 731 IYIGEM-CRYLLASKESEADY-----SHQV---------VK--MIGVGMRGDIWAKFVKR 773
+ M R L +E A Y H + VK MI + W
Sbjct: 248 HMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMI------EWWGP---- 297
Query: 774 FHVQTIIEFYGATEGNANLVNMDNTE------GAVGIIPTLLPTFLHPVAIIQFDLVENQ 827
I E+YG+TE A V +E G VG P A ++F + +
Sbjct: 298 ----VIYEYYGSTESGA--VTFATSEDALSHPGTVGKAA--------PGAELRFVDEDGR 343
Query: 828 PIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFL 887
P+ P IGEI + Y +K E + +I +
Sbjct: 344 PL---------------PQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDR------GGFIT 382
Query: 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947
SGD+ +D GYL+ DR D G N+ E+EA + + V+G+ + G
Sbjct: 383 SGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEF-G 441
Query: 948 RAGMIAI-VDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
A M + +D + L A L Y P + IM + + KI K +L
Sbjct: 442 EALMAVVEPQPGATLDEADIRAQLKARLAGYKVPKHIEIMAELPREDSGKIFKRRL 497
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase.
Members of this protein family are
cyclohexanecarboxylate-CoA ligase. This enzyme prepares
the aliphatic ring compound, cyclohexanecarboxylate, for
dehydrogenation and then degradation by a pathway also
used in benzoyl-CoA degradation in Rhodopseudomonas
palustris.
Length = 538
Score = 75.7 bits (186), Expect = 6e-14
Identities = 103/514 (20%), Positives = 192/514 (37%), Gaps = 54/514 (10%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++D ++IA L G +GDV++ NR E+ ++L A++G + + +++ L
Sbjct: 58 ELDCRVDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAVLNPLMPIFREREL 117
Query: 570 VHSISTVKSKAIIVSALYY-----PEIEAIRESIPDVK-LFLLDETKPD----LPNLSDL 619
++ SK +V +++ ++ +P ++ + ++D D + +
Sbjct: 118 SFMLNHADSKVFVVPSVFRGFDHAAMARELQSKLPALRQVVVIDGDGDDSFDRVLMTPER 177
Query: 620 MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGSG 678
T A+ + D IYTSGTTG PK +M L L LG G
Sbjct: 178 DDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPK-GVMHTANTLFSNIHPYAERLELGGG 236
Query: 679 DVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFR----DCAKYKCNAGIYIG 734
DVI PM H G + G + LIL ++ ++ ++ + + + ++
Sbjct: 237 DVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLT 296
Query: 735 EMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE-GNANLV 793
++CR A KES A + I + I+ +G TE G +
Sbjct: 297 DLCR---AVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVT 353
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDP--KTG-LCIRCKYNQPGMIIG 850
D+ P+ ++ +++ + +TG L +R N
Sbjct: 354 EPDDALEKASTTDGR------PLPGVEVKVIDANGAKLSQGETGRLLVRGCSN------- 400
Query: 851 EIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTY 910
F GY + E F GD F + GY+ R+ D
Sbjct: 401 ----------FGGYLKRPHLNSTDAEGWFDTGDLAFQDAE-------GYIRINGRSKDVI 443
Query: 911 RWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGL 970
GEN+ +E+E + ++ + + L RA + + +D +V L
Sbjct: 444 IRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFL 503
Query: 971 DANLPAYAR-PLFVRIMKAIEMTGTFKIKKIQLQ 1003
A A P + ++ A+ T KI+K +L+
Sbjct: 504 KAQKVALQYIPERLEVVDALPATPAGKIQKFRLR 537
Score = 38.7 bits (90), Expect = 0.017
Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 112 AILGTKRMAAT-------NTTLVSEFKKSVKRRPNAPCYY-FQDET-----WTIKQIDEY 158
A+L R AA+ + T+ F +V P+ P ++D ++ +++D
Sbjct: 3 AVLLAPRRAASKAAGLWRDRTINDHFDAAVANCPDKPALTAYRDGHGAVRRFSYRELDCR 62
Query: 159 SNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++IA L G +GDV++ NR E+ ++L A++G +
Sbjct: 63 VDRIAVGLARLGVGRGDVVSFQLPNRWEFTALYLACARIGAV 104
>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated.
Length = 542
Score = 75.6 bits (186), Expect = 6e-14
Identities = 60/210 (28%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGD-VLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
++D+ +A L G GD VL LM NR E+V L A LG I+ +N L
Sbjct: 46 RELDDRVAALAGALSRRGVGFGDRVLILML-NRTEFVESVLAANMLGAIAVPVNFRLTPP 104
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPA 625
+ +S + ++ A P A+R+ +P + ++ + + DL+ A
Sbjct: 105 EIAFLVSDCGAHVVVTEAALAPVATAVRDIVPLLSTVVVAGGSSDDSVLGYEDLL----A 160
Query: 626 SEVKPSEPLQTSDS--LLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG---SGDV 680
P+ + L +YTSGTTG PK A++ + L GQ L + G + DV
Sbjct: 161 EAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHAN--LTGQAMTCLRTNGADINSDV 218
Query: 681 IYNCLPMYHSAGGLIGTI-PALILGSSIAI 709
+ +P++H AG IG++ P L+LG+ I
Sbjct: 219 GFVGVPLFHIAG--IGSMLPGLLLGAPTVI 246
Score = 49.4 bits (118), Expect = 9e-06
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD 944
+F SGD++ DE GY++ DR D GEN+ EVE ++ + E V +G
Sbjct: 400 WFHSGDLVRQDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAV----IGR 455
Query: 945 LDGRAG-----MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
D + G + A+ + + L+ L + L L Y P + I+ A+ K+ K
Sbjct: 456 ADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKALEIVDALPRNPAGKVLK 515
Query: 1000 IQLQ 1003
+L+
Sbjct: 516 TELR 519
Score = 43.6 bits (103), Expect = 6e-04
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 137 RPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGD-VLALMCENRPEYVGVWLGAA 195
+P+AP F T T +++D+ +A L G GD VL LM NR E+V L A
Sbjct: 30 QPDAPALRFLGNTTTWRELDDRVAALAGALSRRGVGFGDRVLILML-NRTEFVESVLAAN 88
Query: 196 KLGVIS 201
LG I+
Sbjct: 89 MLGAIA 94
>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase;
Provisional.
Length = 560
Score = 74.9 bits (184), Expect = 9e-14
Identities = 120/545 (22%), Positives = 210/545 (38%), Gaps = 93/545 (17%)
Query: 510 QIDEYSNKIAR-ILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ D+ + A +L + KKGD +ALM N +Y G + G+ +N +
Sbjct: 55 EADQLVEQFAAYLLGELQLKKGDRVALMMPNCLQYPIATFGVLRAGLTVVNVNPLYTPRE 114
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLF------LLDETKPDLPN--LSDLM 620
L H + + ++V + ++ + P ++ +L K L N + +
Sbjct: 115 LKHQLIDSGASVLVVIDNFGTTVQQVIADTPVKQVITTGLGDMLGFPKAALVNFVVKYVK 174
Query: 621 KTTPASEVK-----------------PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL 663
K P + P+ ++ D YT GTTG+ K A++ + ++
Sbjct: 175 KLVPEYRINGAIRFREALALGRKHSMPTLQIEPDDIAFLQYTGGTTGVAKGAMLTHRNLV 234
Query: 664 LGGQVGKHLLSLGSG------DVIYNCLPMYH----SAGGLIGTIPALILGSSIAIRTKF 713
Q L+ G+G +V+ LP+YH +A GL+ I G + I
Sbjct: 235 ANMQQAHQWLA-GTGKLEEGCEVVITALPLYHIFALTANGLVFM---KIGGCNHLISNPR 290
Query: 714 SASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSHQVVKM-IGVGMR-----GDI 766
+ ++ K + A + + LL + + D+S +KM +G GM +
Sbjct: 291 DMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSS--LKMTLGGGMAVQRSVAER 348
Query: 767 WAKFVKRFHVQTIIEFYGATEGNA----NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFD 822
W K+ T++E YG TE + N + + G++G+
Sbjct: 349 W----KQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGL------------------ 386
Query: 823 LVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQ---SDPSRHFYGYADKKESQKKILENVF 879
PI P T CI+ + IGEI + P + GY + E K+++
Sbjct: 387 -----PI--PSTDACIKDDAGT-VLAIGEIGELCIKGP-QVMKGYWKRPEETAKVMD--- 434
Query: 880 KPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYG 939
D + +GD+ MDE G++Y DR D G NV E+E I+ E G
Sbjct: 435 --ADGWLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVG 492
Query: 940 VKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKK 999
V + G + IV + + + ANL Y +P + K + T KI +
Sbjct: 493 VP-DEKSGEIVKVVIVKKDPALTAEDVKAHARANLTGYKQPRIIEFRKELPKTNVGKILR 551
Query: 1000 IQLQN 1004
+L++
Sbjct: 552 RELRD 556
Score = 35.2 bits (81), Expect = 0.21
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIAR-ILQDDGFKKGDVLALMCEN 183
T+ F SV + + P Y+ +T T ++ D+ + A +L + KKGD +ALM N
Sbjct: 26 TVAEVFATSVAKFADRPAYHSFGKTITYREADQLVEQFAAYLLGELQLKKGDRVALMMPN 85
Query: 184 RPEYVGVWLGAAKLGV 199
+Y G + G+
Sbjct: 86 CLQYPIATFGVLRAGL 101
>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase.
Length = 537
Score = 73.9 bits (182), Expect = 2e-13
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 29/220 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN-----TN 563
A ++ S ++A L G ++GDV+ L+ N PE+V +LGA++ G ++ N
Sbjct: 54 ADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTANPFYTPAE 113
Query: 564 LKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
+ KQ +K II + Y +++ + E V + +D+ + S+L T
Sbjct: 114 IAKQ-----AKASGAKLIITQSCYVDKLKGLAED-DGVTVVTIDDPPEGCLHFSEL--TQ 165
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG---QV-GKHL-LSLGSG 678
P + D + Y+SGTTGLPK +M K L+ QV G++ L S
Sbjct: 166 ADENELPEVEISPDDVVALPYSSGTTGLPK-GVMLTHKGLVTSVAQQVDGENPNLYFHSD 224
Query: 679 DVIYNCLPMYHSAGGLIGTIPALIL-----GSSIAIRTKF 713
DVI LPM+H I ++ +++L G++I I KF
Sbjct: 225 DVILCVLPMFH-----IYSLNSVLLCGLRVGAAILIMPKF 259
Score = 44.2 bits (105), Expect = 4e-04
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN 205
+T ++ S ++A L G ++GDV+ L+ N PE+V +LGA++ G ++ +N
Sbjct: 49 RVYTYADVELLSRRVAAGLHKLGIRQGDVVMLLLPNCPEFVLAFLGASRRGAVTTTAN 106
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase. This model
represents an enzyme, O-succinylbenzoate-CoA ligase,
which is involved in the fourth step of the menaquinone
biosynthesis pathway. O-succinylbenzoate-CoA ligase,
together with menB - naphtoate synthase, take
2-succinylbenzoate and convert it into 1,4-di-hydroxy-2-
naphtoate [Biosynthesis of cofactors, prosthetic groups,
and carriers, Menaquinone and ubiquinone].
Length = 436
Score = 72.9 bits (179), Expect = 3e-13
Identities = 103/506 (20%), Positives = 169/506 (33%), Gaps = 84/506 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+D + +A+ L+ G + G +AL+ +N E V + LG A++NT L +
Sbjct: 3 QDLDCEAAHLAKALKAQGIRSGSRVALVGQNSIEMVLLLHACLLLGAEIAMLNTRLTEN- 61
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLF---LLDETKPDLPNLSDLMKTTPA 625
E E + L LL+E +L +
Sbjct: 62 ---------------------ERTNQLEDLDVQLLLTDSLLEEKDFQADSLDRIEAAGR- 99
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGSGDVIYNC 684
E S ++TSGTTG PKA F+ VG K L D
Sbjct: 100 YETSLSASFNMDQIATLMFTSGTTGKPKAVPH-TFRNHYASAVGSKENLGFTEDDNWLLS 158
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK 744
LP+YH GL LI G+++ I KF+ A + + LL
Sbjct: 159 LPLYH-ISGLSILFRWLIEGATLRIVDKFNQ--LLEMIANERVTHISLVPTQLNRLL--D 213
Query: 745 ESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF--YGATEGNANLVN----MDNT 798
E + + + + + G I A ++ + + YG TE + + M +
Sbjct: 214 EGGHNENLRKILLGG----SAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHA 269
Query: 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
VG P + I + + I M+ G
Sbjct: 270 RPDVGR-----PLAGREIKIKVDNKEGHGEI-----------------MVKGANL----- 302
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
GY + E + G +F +GD+ +D G+LY R D GEN+
Sbjct: 303 --MKGYLYQGELT----PAFEQQG--WFNTGDIGELDGEGFLYVLGRRDDLIISGGENIY 354
Query: 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM--IAIVDTSNQVDLKLLVQGLDANLPA 976
E+E + ++ E V D G +A + + + + L+ L L
Sbjct: 355 PEEIETVLYQHPGIQEAVVVPKP----DAEWGQVPVAYIVSESDISQAKLIAYLTEKLAK 410
Query: 977 YARPLFVRIMKAIEMTGTFKIKKIQL 1002
Y P+ + + + KI + QL
Sbjct: 411 YKVPIAFEKLDELPYNASGKILRNQL 436
>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated.
Length = 546
Score = 73.1 bits (180), Expect = 4e-13
Identities = 126/582 (21%), Positives = 217/582 (37%), Gaps = 124/582 (21%)
Query: 489 EASNARSTNDAA------ATTVKNLEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRP 541
E S R + A A + + L + ++A LQ + G +KGD + L +N P
Sbjct: 17 EVSARRYPDKTAIVFYGRAISYRELLEEA----ERLAGYLQQECGVRKGDRVLLYMQNSP 72
Query: 542 EYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIE------AIR 595
++V + + + +N +++ L H ++ ++ IV + P++ +R
Sbjct: 73 QFVIAYYAILRANAVVVPVNPMNREEELAHYVTDSGARVAIVGSELAPKVAPAVGNLRLR 132
Query: 596 ESI-----------PDVKLFLLDETKPDLPNLSD----LMKTTPASEVKPSEPLQTSDSL 640
I P++ + +P L L+ K A+ + P D L
Sbjct: 133 HVIVAQYSDYLPAEPEIAVPAWLRAEPPLQALAPGGVVAWKEALAAGLAPPPHTAGPDDL 192
Query: 641 LYI-YTSGTTGLPKAAIMPNFKVL---LGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
+ YTSGTTG+PK + + V+ +G + V+ LP++H G +
Sbjct: 193 AVLPYTSGTTGVPKGCMHTHRTVMANAVGSV---LWSNSTPESVVLAVLPLFHVTGMVHS 249
Query: 697 TIPALILGSSIAIRTKFSASNYFRDCA-----KYKCNAGIYIGEMCRYLLAS-KESEADY 750
+ G+++ + ++ R+ A +Y+ I M LAS +E D
Sbjct: 250 MNAPIYAGATVVLMPRWD-----REAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDL 304
Query: 751 SHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPT 807
S ++ IG G M + + + + +E YG TE T
Sbjct: 305 SS--LRYIGGGGAAMPEAVAERLKELTGL-DYVEGYGLTE-------------------T 342
Query: 808 LLPTFLHPVA--------IIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
+ T +P I F V+ + I DP+T + PG +GEI P
Sbjct: 343 MAQTHSNPPDRPKLQCLGIPTFG-VDARVI-DPETL-----EELPPGE-VGEIVVHGPQV 394
Query: 860 HFYGYADKKESQKKILENVFKP--GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
F GY ++ E+ F G ++F +GD+ MDE GY + DR G V
Sbjct: 395 -FKGYWNRPEAT----AEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKV 449
Query: 918 STMEVEAT------------ISKYLPYTEFTVYGVKVGDLDGRAGMIA--IVDTSNQVDL 963
EVE I+ P TV V V + R I+ + +
Sbjct: 450 WPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAWARE--- 506
Query: 964 KLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
++ AY P V + ++ +G+ KI QLQ +
Sbjct: 507 ---------HMAAYKYPRIVEFVDSLPKSGSGKILWRQLQEQ 539
Score = 36.1 bits (84), Expect = 0.100
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCE 182
T+L + S +R P+ F + +++ E + ++A LQ + G +KGD + L +
Sbjct: 10 TSLFHNLEVSARRYPDKTAIVFYGRAISYRELLEEAERLAGYLQQECGVRKGDRVLLYMQ 69
Query: 183 NRPEYV 188
N P++V
Sbjct: 70 NSPQFV 75
>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase
A-associated. This group of proteins contains an
AMP-binding domain (pfam00501) associated with acyl
CoA-ligases. These proteins are generally found in
genomes containing the exosortase/PEP-CTERM protein
expoert system , specifically the type 1 variant of this
system described by the Genome Property GenProp0652.
When found in this context they are invariably present
next to a decarboxylase enzyme. A number of sequences
from Burkholderia species also hit this model, but the
genomic context is obviously different. The hypothesis
of a constant substrate for this family is only strong
where the exosortase context is present.
Length = 517
Score = 72.1 bits (177), Expect = 6e-13
Identities = 46/210 (21%), Positives = 80/210 (38%), Gaps = 9/210 (4%)
Query: 492 NARSTNDAAATTVKN---LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
A DA A + A + E +A L+ G +G+ +A+ + R E V
Sbjct: 9 AAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMF 68
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV-KLFLLD 607
GAA G + IN LK + + H ++ + ++ S+ + D+ L ++
Sbjct: 69 GAALAGGVFVPINPLLKAEQVAHILADCNVRLLVTSSERLDLLHPALPGCHDLRTLIIVG 128
Query: 608 ETKPDLPNLSDLM-----KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKV 662
+ K + P P+ SD +YTSG+TG PK ++ + +
Sbjct: 129 DPAHASEGHPGEEPASWPKLLALGDADPPHPVIDSDMAAILYTSGSTGRPKGVVLSHRNL 188
Query: 663 LLGGQVGKHLLSLGSGDVIYNCLPMYHSAG 692
+ G Q L D + LP+ G
Sbjct: 189 VAGAQSVATYLENRPDDRLLAVLPLSFDYG 218
Score = 52.5 bits (126), Expect = 1e-06
Identities = 32/118 (27%), Positives = 47/118 (39%)
Query: 888 SGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDG 947
SGD + DE G+LYF R + + G VS EVE E +GV L
Sbjct: 400 SGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQ 459
Query: 948 RAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
++ ++D L+ A LP Y P + + +A+ KI + L E
Sbjct: 460 AIVLVVTPPGGEELDRAALLAECRARLPNYMVPALIHVRQALPRNANGKIDRKALAKE 517
Score = 34.4 bits (79), Expect = 0.37
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 133 SVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 192
+ R P+A D T T + E +A L+ G +G+ +A+ + R E V
Sbjct: 9 AAARLPDATALVHHDRTLTYAALSERVLALASGLRGLGLARGERVAIYLDKRLETVTAMF 68
Query: 193 GAAKLG 198
GAA G
Sbjct: 69 GAALAG 74
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed.
Length = 547
Score = 71.6 bits (176), Expect = 1e-12
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 29/238 (12%)
Query: 493 ARSTNDAAATTVKNLE---------AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 543
S D A T L ++ +++A L G +GDV++ N E+
Sbjct: 34 VASCPDKTAVTAVRLGTGAPRRFTYRELAALVDRVAVGLARLGVGRGDVVSCQLPNWWEF 93
Query: 544 VGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY----YPEI-EAIRESI 598
++L +++G + + +++ L + +SK ++V + + + +R +
Sbjct: 94 TVLYLACSRIGAVLNPLMPIFRERELSFMLKHAESKVLVVPKTFRGFDHAAMARRLRPEL 153
Query: 599 PDVK-LFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSL--------LYIYTSGTT 649
P ++ + ++ D + + + TPA E +P P L IYTSGTT
Sbjct: 154 PALRHVVVVGG---DGADSFEALLITPAWEQEPDAP-AILARLRPGPDDVTQLIYTSGTT 209
Query: 650 GLPKAAIMPNFKVLLGGQVG-KHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706
G PK M L+ V L LG+ DVI PM H G + G + ++LG++
Sbjct: 210 GEPKGV-MHTANTLMANIVPYAERLGLGADDVILMASPMAHQTGFMYGLMMPVMLGAT 266
Score = 36.6 bits (85), Expect = 0.079
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 5/123 (4%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ +D GY+ R+ D GEN+ +E+EA + ++ + +
Sbjct: 418 DGWFDTGDLARIDADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPD 477
Query: 943 GDLDGRAGMIAIVDTSNQVDLKLLVQGLDAN---LPAYARPLFVRIMKAIEMTGTFKIKK 999
L RA + +D + +V+ L A L VR A+ T + KI+K
Sbjct: 478 ERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPERLVVR--DALPRTPSGKIQK 535
Query: 1000 IQL 1002
+L
Sbjct: 536 FRL 538
Score = 36.6 bits (85), Expect = 0.084
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 13/103 (12%)
Query: 112 AILGTKRMAAT-------NTTLVSEFKKSVKRRPNAPCY------YFQDETWTIKQIDEY 158
A+L R AA+ + T+ + V P+ +T +++
Sbjct: 5 AVLLPPRRAASIAAGHWHDRTINDDLDACVASCPDKTAVTAVRLGTGAPRRFTYRELAAL 64
Query: 159 SNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
+++A L G +GDV++ N E+ ++L +++G +
Sbjct: 65 VDRVAVGLARLGVGRGDVVSCQLPNWWEFTVLYLACSRIGAVL 107
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 71.4 bits (175), Expect = 2e-12
Identities = 108/527 (20%), Positives = 193/527 (36%), Gaps = 67/527 (12%)
Query: 522 LQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAI 581
L G + GDV+A+ N Y+ L A G I A +N + ++ V+ +
Sbjct: 49 LLRLGLRNGDVVAIAALNSDLYLEWLLAVACAGGIVAPLNYRWSFEEAKSAMLLVRPVML 108
Query: 582 IV--SALYYPEIEAIRESIPDVKL-FLLDETKPDL-PNLSDLMKTTPASEVKPSEPLQT- 636
+ + + E + +P + L+ + L+ + T +
Sbjct: 109 VTDETCSSWY-EELQNDRLPSLMWQVFLESPSSSVFIFLNSFLTTEMLKQRALGTTELDY 167
Query: 637 ----SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAG 692
D++L +TSGTTG PK + + +++ ++ G DV + P+ H G
Sbjct: 168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIVGYGEDDVYLHTAPLCH-IG 226
Query: 693 GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA-SKESEADYS 751
GL + L++G+ + KF A + ++ + I + M L++ +++S
Sbjct: 227 GLSSALAMLMVGACHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKV 286
Query: 752 HQVVKMI---GVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTL 808
V+ I G + + K F + YG TE ++L M
Sbjct: 287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFM----------TLH 336
Query: 809 LPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR--------- 859
PT P +Q G+C+ + +I + SR
Sbjct: 337 DPTLESPKQTLQTVNQTKSSSVHQPQGVCVG---KPAPHVELKIGLDESSRVGRILTRGP 393
Query: 860 H-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
H GY + +L N D + +GD+ +D+ G L+ R+ D + GENV
Sbjct: 394 HVMLGYWGQNSETASVLSN-----DGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVY 448
Query: 919 TMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMI-------------AIVDTSNQVDLKL 965
EVEA +S++ V GV D R + + + N
Sbjct: 449 PEEVEAVLSQHPGVASVVVVGVP----DSRLTEMVVACVRLRDGWIWSDNEKENAKKNLT 504
Query: 966 LVQGL------DANLPAYARP-LFVRIMKAIEMTGTFKIKKIQLQNE 1005
L + NL + P LFV+ K +T T KI++ +++ E
Sbjct: 505 LSSETLRHHCREKNLSRFKIPKLFVQWRKPFPLTTTGKIRRDEVRRE 551
>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.
Length = 570
Score = 69.9 bits (172), Expect = 4e-12
Identities = 50/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKKQ 567
++ E SNK A +L++ G +KGD + + PE Y + LGA K G I + ++
Sbjct: 77 KELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL-LGALKNGAIVGPLFEAFMEE 135
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL----DETKPDLPNLSDLMKTT 623
+ + ++K +I + + +P +K LL E P + + LM+
Sbjct: 136 AVRDRLEDSEAKVLITTPALLERK--PADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQ- 192
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
AS+ E D + YTSG+TG PK + + +L Q GK++L L D +Y
Sbjct: 193 -ASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVLDLHEDD-VYW 250
Query: 684 C 684
C
Sbjct: 251 C 251
Score = 42.2 bits (100), Expect = 0.001
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVI 200
E +T K++ E SNK A +L++ G +KGD + + PE Y + LGA K G I
Sbjct: 71 KEKYTYKELKELSNKFANVLKELGVEKGDRVFIFMPRIPELYFAL-LGALKNGAI 124
Score = 36.0 bits (84), Expect = 0.11
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 852 IKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYR 911
IK+ PS G + E + F +++SGD MDE GY +F+ R D +
Sbjct: 407 IKKGWPSM-MRGIWNNPEKYES----YFAGD--WYVSGDSAYMDEDGYFWFQGRVDDVIK 459
Query: 912 WKGENVSTMEVE 923
GE V EVE
Sbjct: 460 TSGERVGPFEVE 471
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with ATP
to form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is a required
step before free fatty acids can participate in most
catabolic and anabolic reactions.
Length = 359
Score = 68.5 bits (168), Expect = 5e-12
Identities = 89/387 (22%), Positives = 147/387 (37%), Gaps = 56/387 (14%)
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKH-----LLSLGSGDVIYNCLPMYHSA 691
D Y +T GTTG PK A + +V L LG GDV+ N LP++H
Sbjct: 2 DDLAAYFHTGGTTGAPKLA-----RHSHRNEVANAWMAALLSGLGPGDVLLNGLPLFHVG 56
Query: 692 GGLIGTIPAL------ILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE 745
G ++ + L +L + R +N+++ +Y+ + + LL
Sbjct: 57 GAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVLAALLQVPL 116
Query: 746 SEADYSHQVVKMIGVG-MRGDIWAKFVKRFHVQTIIEFYGATEGNA----NLVNMDNTEG 800
+AD S + G + ++ +F V ++E YG TEG N G
Sbjct: 117 GDADISSLRYALTGAAPLPVEVARRFEAVTGV-PVVEGYGMTEGTGVSAINPRGGPRRPG 175
Query: 801 AVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRH 860
+VG+ LP V + + D RD C + G++ P+
Sbjct: 176 SVGL---RLP--YTRVRVAKLDA-GGALGRD--------CAPGEVGVLA----IRGPNV- 216
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
F GY + + + D + +GD+ +D GYL+ R D G N+
Sbjct: 217 FPGYLNDAHNAG------ARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDPQ 270
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGM--IAIVDTSNQVDLKL--LVQGLDANLP- 975
+E + ++ P VG D AG +A V + L+ + A +P
Sbjct: 271 MIEEALLRH-PAVAL---AAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVKARIPE 326
Query: 976 AYARPLFVRIMKAIEMTGTFKIKKIQL 1002
A P + I+ A+ +T KI K +L
Sbjct: 327 RAAVPKAIYIIDALPLTAVGKIFKPRL 353
>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 483
Score = 68.8 bits (169), Expect = 7e-12
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 21/209 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ E +A L G KKGD +AL+ +N E + V +LG ++ L+NT L ++
Sbjct: 31 MELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILVIHALQQLGAVAVLLNTRLSREE 90
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L+ + + K +I + ++ ++LM P E
Sbjct: 91 LLWQLDDAEVKCLITDDDFEAKLIPGISVK-----------------FAELMN-GPKEEA 132
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL-LSLGSGDVIYNCLPM 687
+ E + +YTSGTTG PK ++ + VG L L L D +P+
Sbjct: 133 EIQEEFDLDEVATIMYTSGTTGKPK-GVIQTYGNHWWSAVGSALNLGLTEDDCWLAAVPI 191
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSAS 716
+H GL + ++I G + + KF A
Sbjct: 192 FH-ISGLSILMRSVIYGMRVVLVEKFDAE 219
Score = 50.3 bits (121), Expect = 4e-06
Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY +++++ ++ + D +F +GD+ +DE G+LY DR D GEN+ E+
Sbjct: 345 GYLNREDATRETFQ------DGWFKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEI 398
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAGMI--AIVDTSNQVDLKLLVQGLDANLPAYARP 980
E + + E V GV D + G + A V S +V + L + L Y P
Sbjct: 399 EEVLLSHPGVAEAGVVGVP----DDKWGQVPVAFVVKSGEVTEEELRHFCEEKLAKYKVP 454
Query: 981 LFVRIMKAIEMTGTFKIKKIQLQNE 1005
++ + + K+ + +L+
Sbjct: 455 KRFYFVEELPRNASGKLLRHELKQL 479
Score = 46.5 bits (111), Expect = 7e-05
Identities = 21/76 (27%), Positives = 36/76 (47%)
Query: 131 KKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190
K+ P+ F+++ T ++ E +A L G KKGD +AL+ +N E + V
Sbjct: 9 KQRAFLTPDRTAIEFEEKKVTFMELHEAVVSVAGKLAALGVKKGDRVALLMKNGMEMILV 68
Query: 191 WLGAAKLGVISKLSNV 206
+LG ++ L N
Sbjct: 69 IHALQQLGAVAVLLNT 84
>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated.
Length = 563
Score = 68.9 bits (168), Expect = 7e-12
Identities = 107/462 (23%), Positives = 178/462 (38%), Gaps = 73/462 (15%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+ A LQ G +KGD +A+M N P+ V + G G I N ++ L + +
Sbjct: 61 RFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTLLAGGIVVQTNPLYTERELEYQLHDS 120
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM-------KTTPASEVK 629
+K I+ L +P + + +S ++ ++ LP +L+ ++ +V
Sbjct: 121 GAKVILCLDLVFPRVTNV-QSATKIEHVIVTRIADFLPFPKNLLYPFVQKKQSNLVVKVS 179
Query: 630 PSEPLQTSDSL-------------------LYIYTSGTTGLPKAAIMPNFKVLLGGQVGK 670
SE + +S+ L YT GTTG PK ++ + ++ +G
Sbjct: 180 ESETIHLWNSVEKEVNTGVEVPCDPENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGV 239
Query: 671 HLL--SLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCN 728
L +V+ LP +H G +++ G + + KF F K+K
Sbjct: 240 QWLYNCKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVT 299
Query: 729 -----AGIYIGEMCRYLLASKESEADYSHQVVKMIGVG-MRGDIWAKFVKRFHVQTIIEF 782
IYI + LL E D S + G + ++ KF + ++E
Sbjct: 300 LFPGAPTIYIALLNSPLL----KEYDISSIRACISGSAPLPVEVQEKF-ETVTGGKLVEG 354
Query: 783 YGATEGN----ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838
YG TE + +N + G++G+ P I+ + TG +
Sbjct: 355 YGLTESSPVTHSNFLWEKRVPGSIGV-----PWPDTEAMIMSLE-----------TGEAL 398
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
PG I GEI P + GY +K E +L+ D + +GD+ MDE G
Sbjct: 399 P-----PGEI-GEIVVKGP-QIMKGYWNKPEETAAVLQ------DGWLHTGDVGYMDEDG 445
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
+ Y KDR D G NV EVE + ++ E GV
Sbjct: 446 FFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGV 487
Score = 30.8 bits (69), Expect = 4.5
Identities = 20/73 (27%), Positives = 32/73 (43%)
Query: 136 RRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195
R P +F + T + + A LQ G +KGD +A+M N P+ V + G
Sbjct: 36 RYPEKKALHFLGKDITFSVFHDKVKRFANYLQKLGVEKGDRVAIMLPNCPQAVIGYYGTL 95
Query: 196 KLGVISKLSNVVW 208
G I +N ++
Sbjct: 96 LAGGIVVQTNPLY 108
>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like.
Length = 560
Score = 68.7 bits (168), Expect = 1e-11
Identities = 103/423 (24%), Positives = 170/423 (40%), Gaps = 60/423 (14%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN-----TNLKKQPLVHSIS---TVK 577
G ++GDV+ L+ N + ++L LG I +N +KK+ + S+ T
Sbjct: 88 GVRQGDVVLLLLPNSVYFPVIFLAVLSLGGIVTTMNPSSSLGEIKKRVVDCSVGLAFTSP 147
Query: 578 SKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTS 637
+S L P I +P+ F D + + P +L+K KP ++
Sbjct: 148 ENVEKLSPLGVPVI-----GVPENYDF--DSKRIEFPKFYELIKEDFDFVPKP--VIKQD 198
Query: 638 DSLLYIYTSGTTGLPKAAIMP--NFKVLLGGQV---GKHLLSLGSGDVIYNCLPMYHSAG 692
D +Y+SGTTG K ++ N ++ V GS +V LPM+H G
Sbjct: 199 DVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYEYPGSDNVYLAALPMFHIYG 258
Query: 693 GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSH 752
+ + L LGS+I + +F AS+ + ++K + + L +
Sbjct: 259 LSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVL 318
Query: 753 QVVKMIGVG---MRGDIWAKFVKRF-HVQTIIEFYGATEGNANLVNMDNTE-----GAVG 803
+ +K + G + G FV+ HV I+ YG TE A NTE +VG
Sbjct: 319 KSLKQVSCGAAPLSGKFIQDFVQTLPHVD-FIQGYGMTESTAVGTRGFNTEKLSKYSSVG 377
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
+ L P +Q +V D TG + PG GE+ P
Sbjct: 378 L---LAPN-------MQAKVV------DWSTGCLL-----PPGN-CGELWIQGPGVMKGY 415
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
+ K +Q I + D + +GD+ DE GYLY DR + ++KG ++ ++E
Sbjct: 416 LNNPKATQSTIDK------DGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLE 469
Query: 924 ATI 926
A +
Sbjct: 470 AVL 472
>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate
forming enzymes. This family contains benzoate CoA
ligase (BCL) and related ligases that catalyze the
acylation of benzoate derivatives, 2-aminobenzoate and
4-hydroxybenzoate. Aromatic compounds represent the
second most abundant class of organic carbon compounds
after carbohydrates. Xenobiotic aromatic compounds are
also a major class of man-made pollutants. Some bacteria
use benzoate as the sole source of carbon and energy
through benzoate degradation. Benzoate degradation
starts with its activation to benzoyl-CoA by benzoate
CoA ligase. The reaction catalyzed by benzoate CoA
ligase proceeds via a two-step process; the first
ATP-dependent step forms an acyl-AMP intermediate, and
the second step forms the acyl-CoA ester with release of
the AMP.
Length = 436
Score = 67.8 bits (166), Expect = 1e-11
Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 54/181 (29%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++ + +N+ A +L+ G GD + L+ + PE V +L K G ++ +N L Q L
Sbjct: 15 ELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAVAVALNPLLTPQDL 74
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
H + + ++ A
Sbjct: 75 EHILDDSGAALLVTEA-------------------------------------------- 90
Query: 630 PSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQ-VGKHLLSLGSGDVIYNCLPM 687
D + Y YTSGTTG PK + + L + + LL L GD I++ +
Sbjct: 91 --------DDIAYWLYTSGTTGKPKGVMHRHRDPLTFAEAFARELLGLQPGDRIFSSSKL 142
Query: 688 Y 688
+
Sbjct: 143 F 143
Score = 62.4 bits (152), Expect = 7e-10
Identities = 33/146 (22%), Positives = 58/146 (39%), Gaps = 9/146 (6%)
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
GY + E ++ L D + +GD D G+ ++ R D + G+ VS +
Sbjct: 297 APGYWNLPEKTQRTL------RDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350
Query: 921 EVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKL---LVQGLDANLPAY 977
EVEA + ++ E V V D R + + L L + L L Y
Sbjct: 351 EVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEAIQQLLERDLHRFLRERLAPY 410
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
P + + + T T K+++ +L+
Sbjct: 411 KCPRQIEFLDTLPRTATGKLQRFRLR 436
Score = 53.1 bits (128), Expect = 5e-07
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 141 PCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
+Y +++ T +++ + +N+ A +L+ G GD + L+ + PE V +L K G +
Sbjct: 2 TAFYCGEQSLTYRELHDLANRFANVLRALGVSPGDRVLLLLPDSPELVAAFLACLKAGAV 61
Query: 201 SKLSNV 206
+ N
Sbjct: 62 AVALNP 67
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and
Bubblegum-like very long-chain fatty acid CoA
synthetases. This family includes long-chain fatty acid
(C12-C20) CoA synthetases and Bubblegum-like very
long-chain (>C20) fatty acid CoA synthetases. FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
Eukaryotes generally have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells. Drosophila melanogaster
mutant bubblegum (BGM) have elevated levels of
very-long-chain fatty acids (VLCFA) caused by a
defective gene later named bubblegum. The human homolog
(hsBG) of bubblegum has been characterized as a very
long chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. Free fatty
acids must be "activated" to their CoA thioesters before
participating in most catabolic and anabolic reactions.
Length = 456
Score = 67.6 bits (166), Expect = 2e-11
Identities = 44/201 (21%), Positives = 73/201 (36%), Gaps = 49/201 (24%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E ++A L G K GD +A++ ENRPE+V L G + I +
Sbjct: 9 AELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVPVPIYPTSSPEE 68
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++ ++ + V E KPD
Sbjct: 69 VAYILNDSGARVVFV------------------------EDKPD---------------- 88
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
D IYTSGTTG PK ++ + +L ++ L GD + + LP+
Sbjct: 89 ---------DLATLIYTSGTTGNPKGVMLTHRNLLAQAAALLEVIPLSPGDRVLSFLPLA 139
Query: 689 HSAGGLIGTIPALILGSSIAI 709
H +G L G+ +
Sbjct: 140 HVFEQRLGEYLPLSSGARVNF 160
Score = 41.0 bits (97), Expect = 0.003
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS 201
+T T ++ E ++A L G K GD +A++ ENRPE+V L G +
Sbjct: 4 QTITWAELAERVRRLAAGLIALGVKPGDRVAILAENRPEWVIADLAILAAGAVP 57
Score = 29.8 bits (68), Expect = 8.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRW-KGENVSTMEVEATISKYLPY 932
D + +GD+ +DE G+L DR D G+N++ +E + K PY
Sbjct: 310 DGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAPQPIENAL-KASPY 359
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA
synthetase (LC-FACS), including Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase.
The members of this family are bacterial long-chain
fatty acid CoA synthetase. Marinobacter
hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
in this family is involved in the synthesis of
isoprenoid wax ester storage compounds when grown on
phytol as the sole carbon source. LC-FACS catalyzes the
formation of fatty acyl-CoA in a two-step reaction: the
formation of a fatty acyl-AMP molecule as an
intermediate, and the formation of a fatty acyl-CoA.
Free fatty acids must be "activated" to their CoA
thioesters before participating in most catabolic and
anabolic reactions.
Length = 504
Score = 67.3 bits (165), Expect = 2e-11
Identities = 52/209 (24%), Positives = 93/209 (44%), Gaps = 19/209 (9%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV----GVWLGAAKLGVISALINTNL 564
AQ+ + + +IA LQ G + GD +A++ +N E++ +W+ G +S + L
Sbjct: 10 AQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWIIADLAIWMA----GHVSVPLYPTL 65
Query: 565 KKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD---VKLFLLDETKPDLPNLSDLMK 621
+ + + + +KA+ V L + +A++ +P+ + T D DL+
Sbjct: 66 TAETIRYVLEHSDAKALFVGKL--DDWDAMKAGVPEGLPTIILFPYSTLKDHYKWDDLLA 123
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGD 679
T + PL + L I YTSGTTG PK M +F Q ++ L D
Sbjct: 124 ATEPLQ---GRPLPEPEDLATIVYTSGTTGQPKGV-MLSFGAFAFAAQGTIEIIGLTPND 179
Query: 680 VIYNCLPMYHSAGGLIGTIPALILGSSIA 708
+ + LP+ H A +I +L G+ +
Sbjct: 180 RLLSYLPLAHIAERVIVEGGSLYSGAEVF 208
Score = 32.6 bits (75), Expect = 1.1
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 145 FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188
+ + TW Q+ + + +IA LQ G + GD +A++ +N E++
Sbjct: 4 WHEYTW--AQVADQARRIAAALQSLGLEPGDRIAILSKNCAEWI 45
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated.
Length = 632
Score = 67.3 bits (165), Expect = 3e-11
Identities = 117/559 (20%), Positives = 209/559 (37%), Gaps = 91/559 (16%)
Query: 494 RSTNDAAATTV--KNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 551
+ T L A + +N + + G GDV+A + N PE G
Sbjct: 49 DADPLDRPETWTYAELLADVTRTANLLHSL----GVGPGDVVAFLLPNLPETHFALWGGE 104
Query: 552 KLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY-----YPEIEAIRESIPDVKLFLL 606
G I+ IN L+ + + + +K ++ + + ++ + ++P+++ +
Sbjct: 105 AAG-IANPINPLLEPEQIAELLRAAGAKVLVTLGPFPGTDIWQKVAEVLAALPELRTVVE 163
Query: 607 DETKPDLP-------------------NLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSG 647
+ LP + + P + P+ D Y +T G
Sbjct: 164 VDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGG 223
Query: 648 TTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPA------- 700
TTG+PK A + + +G LL LG GD ++ LP++H L+ T A
Sbjct: 224 TTGMPKLAQHTHGNEVANAWLGALLLGLGPGDTVFCGLPLFH-VNALLVTGLAPLARGAH 282
Query: 701 LILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGV 760
++L + R +N+++ +Y+ N + + LL D S ++
Sbjct: 283 VVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVPVDGHDISS--LRYALC 340
Query: 761 G---MRGDIWAKFVKRFHVQTIIEFYGATEGNA----NLVNMDNTEGAVGIIPTLLPTFL 813
G + +++ +F V I+E YG TE N + + G+VG+ LP
Sbjct: 341 GAAPLPVEVFRRFEAATGV-RIVEGYGLTEATCVSSVNPPDGERRIGSVGL---RLP--Y 394
Query: 814 HPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKK 873
V ++ I D C ++ +G + + P+ F GY + ++
Sbjct: 395 QRVRVV---------ILDDAGRYLRDCAVDE----VGVLCIAGPNV-FSGYLEAAHNKGL 440
Query: 874 ILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT 933
LE D + +GD+ +D GY + R D G N+ +E + L +
Sbjct: 441 WLE------DGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEAL---LRHP 491
Query: 934 EFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYAR---------PLFVR 984
+ VG D AG + + V LK +A L A+AR P VR
Sbjct: 492 AVALAAA-VGRPDAHAGELPVA----YVQLKPGASATEAELLAFARDHIAERAAVPKHVR 546
Query: 985 IMKAIEMTGTFKIKKIQLQ 1003
I+ A+ T KI K L+
Sbjct: 547 ILDALPKTAVGKIFKPALR 565
>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated.
Length = 524
Score = 66.9 bits (164), Expect = 3e-11
Identities = 92/428 (21%), Positives = 156/428 (36%), Gaps = 57/428 (13%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVW--LGAAKLGVISALINTNLKKQPL----- 569
+ + + G GD +AL+ NRPE V +GAA+L + L T L PL
Sbjct: 49 RYIQAFEALGLGTGDAVALLSLNRPE---VLMAIGAAQL---AGLRRTAL--HPLGSLDD 100
Query: 570 -VHSISTVKSKAIIVSALYYPE-IEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
+ + +IV + E A+ +P +K L T +P+ DL+
Sbjct: 101 HAYVLEDAGISTLIVDPAPFVERALALLARVPSLKHVL---TLGPVPDGVDLLAAAAKFG 157
Query: 628 VKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLG-SGDVIY-NC 684
P + + YT GTTG PK + + + L D + C
Sbjct: 158 PAPLVAAALPPDIAGLAYTGGTTGKPKGVMGTHRS--IATMAQIQLAEWEWPADPRFLMC 215
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLL-AS 743
P+ H+ G +P L+ G ++ + KF + R + + A + M LL
Sbjct: 216 TPLSHAGGAFF--LPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHP 273
Query: 744 KESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAV 802
D S + V M A+ ++RF ++YG TE + +
Sbjct: 274 DLRTRDLSSLETVYYGASPMSPVRLAEAIERFG-PIFAQYYGQTEAPMVITYLR-KRDHD 331
Query: 803 GIIPTLLPTFLHPVAIIQFDLV--ENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQSDPSR 859
P L + P ++ L+ + + + + G +C+R P ++ G + +
Sbjct: 332 PDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVR----GPLVMDGYWNRPE--- 384
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F+ G + +GD+ DE G+ Y DR D G NV
Sbjct: 385 --------------ETAEAFRDG--WLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFP 428
Query: 920 MEVEATIS 927
EVE ++
Sbjct: 429 REVEDVLA 436
Score = 43.1 bits (102), Expect = 8e-04
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 133 SVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVW- 191
++KR P+ P D T Q+ + ++ + + G GD +AL+ NRPE V
Sbjct: 21 ALKRYPDRPALVLGDTRLTYGQLADRISRYIQAFEALGLGTGDAVALLSLNRPE---VLM 77
Query: 192 -LGAAKL 197
+GAA+L
Sbjct: 78 AIGAAQL 84
>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional.
Length = 542
Score = 66.3 bits (162), Expect = 5e-11
Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 13/203 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQI + + K+++ L DG K GD +A + N ++ W G +G I +N L +
Sbjct: 43 AQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFPEQ 102
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL---DETKPD--LPNL---SDLM 620
+ I+ + + +I + P +E I + +P V+ +++ P L N + +
Sbjct: 103 IAWIINHAEDRVVITDLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWI 162
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV--GKHLLSLGSG 678
+ T+ + YTSGTTG PK + + +L + L +
Sbjct: 163 AEADGDFAWKTFDENTAAGM--CYTSGTTGDPKGVLYSHRSNVLHALMANNGDALGTSAA 220
Query: 679 DVIYNCLPMYHS-AGGLIGTIPA 700
D + +P++H+ + G+ + P+
Sbjct: 221 DTMLPVVPLFHANSWGIAFSAPS 243
Score = 42.0 bits (99), Expect = 0.002
Identities = 32/121 (26%), Positives = 56/121 (46%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ +D GY+ DR+ D + GE +S++++E + E V GV
Sbjct: 409 DGFFDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYH 468
Query: 943 GDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
D R +I + + +++ +D + + P V + AI T T KI K L
Sbjct: 469 PKWDERPLLIVQLKPGETATREEILKYMDGKIAKWWMPDDVAFVDAIPHTATGKILKTAL 528
Query: 1003 Q 1003
+
Sbjct: 529 R 529
Score = 34.0 bits (78), Expect = 0.56
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSN----- 205
T QI + + K+++ L DG K GD +A + N ++ W G +G I N
Sbjct: 41 TYAQIHDRALKVSQALDRDGIKLGDRVATIAWNTWRHLEAWYGIMGIGAICHTVNPRLFP 100
Query: 206 --VVWLAQLLGKKMVHF 220
+ W+ ++V
Sbjct: 101 EQIAWIINHAEDRVVIT 117
>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family. Characterized
members of this protein family include benzoate-CoA
ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA
ligase, etc. Members are related to fatty acid and
acetate CoA ligases.
Length = 508
Score = 65.6 bits (160), Expect = 7e-11
Identities = 109/528 (20%), Positives = 217/528 (41%), Gaps = 68/528 (12%)
Query: 497 NDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 556
+D ++ + LEAQ+ + R+ G K+ + + L+ + ++ +LGA + G++
Sbjct: 26 DDISSLSYGELEAQVRRLGAALRRL----GVKREERVLLLMLDGVDFPIAFLGAIRAGIV 81
Query: 557 SALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPD-VKLFLLDETKPDLPN 615
+NT L + + +++ + VS P I+A P ++ +
Sbjct: 82 PVALNTLLTADDYAYMLEDSRARVVFVSGELLPVIKAALGKSPHLEHRVVVGRPEAGEVQ 141
Query: 616 LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLS 674
L++L+ T SE Q D ++Y+SG+TG+PK + + ++ ++ L
Sbjct: 142 LAELLAT--ESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNPYWTAELYARNTLG 199
Query: 675 LGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYI 733
+ DV+++ ++ + G G T P + +++ + + + F ++ I+
Sbjct: 200 IREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRH--QPTIFY 257
Query: 734 GEMCRY--LLASKE--SEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE-G 788
G Y +LA +E ++ G + ++ ++ RF V I++ G+TE
Sbjct: 258 GVPTLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGVD-IVDGIGSTEML 316
Query: 789 NANLVNM--DNTEGAVGIIPTLLPTFLHPVAIIQFDLVEN--QPIRDPKTGLCIRCKYNQ 844
+ L N+ D G G PV + LV + Q + +
Sbjct: 317 HIFLSNLPGDVRYGTSGK----------PVPGYRLRLVGDGGQDVAAGE----------- 355
Query: 845 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVF-KPGDKYFLSGDMMVMDELGYLYFK 903
GE+ S PS Y + + + + + + GDKY V ++ G +
Sbjct: 356 ----PGELLISGPSSA-TMYWNNRAKTRDTFQGEWTRSGDKY-------VRNDDGSYTYA 403
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV-------- 955
RT D + G VS E+E+ + ++ E V GV+ D DG A +
Sbjct: 404 GRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVE--DEDGLIKPKAFIVLRPGQDI 461
Query: 956 DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
DT+ + +LK V+ L Y P ++ + + T T KI++ +L+
Sbjct: 462 DTALETELKEHVKDR---LAPYKYPRWIVFVDDLPKTATGKIQRFKLR 506
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional.
Length = 558
Score = 65.9 bits (161), Expect = 7e-11
Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 25/246 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ + +++AR L G + GD + + N E++ A++G I IN +
Sbjct: 49 RQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEWLLTQFATARIGAILVNINPAYRASE 108
Query: 569 LVHSISTVKSKAIIVSALYYPE--IEAIRESIPDVKLFLLDETKP-DLPNLSDLMKTTPA 625
L +++ + +I + + ++E +P + LP L ++ PA
Sbjct: 109 LEYALGQSGVRWVICADAFKTSDYHAMLQELLPGLAEGQPGALACERLPELRGVVSLAPA 168
Query: 626 --------SEVKP-------------SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL 664
E++ L D + YTSGTTG PK A + + +L
Sbjct: 169 PPPGFLAWHELQARGETVSREALAERQASLDRDDPINIQYTSGTTGFPKGATLSHHNILN 228
Query: 665 GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI-RTKFSASNYFRDCA 723
G L L D + +P+YH G ++ + + +G+ + F +
Sbjct: 229 NGYFVAESLGLTEHDRLCVPVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVE 288
Query: 724 KYKCNA 729
+ +C A
Sbjct: 289 EERCTA 294
Score = 45.1 bits (107), Expect = 2e-04
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 130 FKKSVKRRPNAPC--YYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY 187
F +V R P+ Q +T +Q+ + +++AR L G + GD + + N E+
Sbjct: 24 FDATVARFPDREALVVRHQALRYTWRQLADAVDRLARGLLALGVQPGDRVGIWAPNCAEW 83
Query: 188 VGVWLGAAKLGVI 200
+ A++G I
Sbjct: 84 LLTQFATARIGAI 96
Score = 36.7 bits (85), Expect = 0.067
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY + E+ + ++ D + +GD+ MDE GY+ R+ D GEN+ E+
Sbjct: 412 GYWNNPEATAESID-----EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREI 466
Query: 923 EATISKYLPYTEFTVYGVKVGDLDGRAG--MIAIV--DTSNQVDLKLLVQGLDANLPAYA 978
E + + + V+GV D + G ++A V + + L + A + +
Sbjct: 467 EEFLFTHPAVADVQVFGVP----DEKYGEEIVAWVRLHPGHAASEEELREFCKARIAHFK 522
Query: 979 RPLFVRIMKAIEMTGTFKIKKIQLQ 1003
P + R + MT T K++K +++
Sbjct: 523 VPRYFRFVDEFPMTVTGKVQKFRMR 547
>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional.
Length = 501
Score = 64.3 bits (156), Expect = 2e-10
Identities = 56/252 (22%), Positives = 105/252 (41%), Gaps = 22/252 (8%)
Query: 490 ASNARSTNDAAATTVKNLEAQI-----DEYSNKIARILQDDGFKKGDVLALMCENRPEYV 544
++A+ D A V Q+ D+ S +AR+L D G + GDV+AL+ +N PE +
Sbjct: 4 GTHAQIAPDRPAVIVAETGEQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEAL 63
Query: 545 GVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLF 604
V A + G+ IN +L + + ++ ++ SA + +P ++L
Sbjct: 64 VVLWAALRSGLYITAINHHLTAPEADYIVGDSGARVLVASAALDGLAAKVGADLP-LRLS 122
Query: 605 LLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKA--AIMPNFKV 662
E + + + +E Q +++ +Y+SGTTG PK +P V
Sbjct: 123 FGGE----IDGFGSFEAALAGAGPRLTE--QPCGAVM-LYSSGTTGFPKGIQPDLPGRDV 175
Query: 663 LLGGQ----VGKHLLSLGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASN 717
G + + + D+ Y+ P+YH+A + A LG ++ + +F A
Sbjct: 176 DAPGDPIVAIARAFYDISESDIYYSSAPIYHAAPLRWCSMVHA--LGGTVVLAKRFDAQA 233
Query: 718 YFRDCAKYKCNA 729
+Y+
Sbjct: 234 TLGHVERYRITV 245
Score = 45.4 bits (107), Expect = 1e-04
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 148 ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 199
E + +Q+D+ S +AR+L D G + GDV+AL+ +N PE + V A + G+
Sbjct: 23 EQVSYRQLDDDSAALARVLYDAGLRTGDVVALLSDNSPEALVVLWAALRSGL 74
Score = 31.5 bits (71), Expect = 2.9
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 889 GDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV---KVGD- 944
GD+ +DE GYLY DR G N+ E E ++ + + V GV ++G+
Sbjct: 384 GDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQ 443
Query: 945 LDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ ++ + S+++ + L+ + + Y P V + + T T K+ K L+
Sbjct: 444 VKAVIQLVEGIRGSDEL-ARELIDYTRSRIAHYKAPRSVEFVDELPRTPTGKLVKGLLR 501
>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated.
Length = 497
Score = 63.8 bits (155), Expect = 3e-10
Identities = 115/534 (21%), Positives = 203/534 (38%), Gaps = 66/534 (12%)
Query: 490 ASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
A +AR T D AA ++ E A+ + + A +L G +GDV+AL+ +N ++ +
Sbjct: 9 AFHARRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLEL 68
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
A+ LG + IN L + + + +K ++V E +AI + ++
Sbjct: 69 AFAASYLGAVFLPINYRLAADEVAYILGDAGAKLLLVDE----EFDAI--VALETPKIVI 122
Query: 607 DE-TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMP--NFK-- 661
D + D L+ E+ P + +D + +YTSGTT PK + N
Sbjct: 123 DAAAQADSRRLA-----QGGLEIPPQAAVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWK 177
Query: 662 -----VLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716
+ LG + LL +G P+YH + I L +G ++ I +F
Sbjct: 178 SIDHVIALGLTASERLLVVG---------PLYHVGAFDLPGIAVLWVGGTLRIHREFDPE 228
Query: 717 NYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGD---IWAKFVKR 773
+++ M +L + + + IG G + I F +
Sbjct: 229 AVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRD-FTRV 287
Query: 774 FHVQTIIEFYGATE--GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRD 831
F I+ YG TE L+ +G L H VE + I D
Sbjct: 288 FTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALA---H---------VEIR-IAD 334
Query: 832 PKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDM 891
P + GEI P + D +++ + + F+ GD +
Sbjct: 335 GAGRWL-------PPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGY----- 382
Query: 892 MVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM 951
+DE G+LY DR D GEN+++ EVE I + E V GV R
Sbjct: 383 --LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITA 440
Query: 952 IAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
+ +++ + L+ L + L ++ P +++ + + K+ K L++E
Sbjct: 441 VVVLNPGATLTLEALDRHCRQRLASFKVPRQLKVRDELPRNPSGKVLKRVLRDE 494
Score = 31.8 bits (72), Expect = 2.1
Identities = 15/66 (22%), Positives = 34/66 (51%)
Query: 135 KRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
+R P+ ++D+ + + + + A +L G +GDV+AL+ +N ++ + A
Sbjct: 13 RRTPDRAALVYRDQEISYAEFHQRILQAAGMLHARGIGQGDVVALLMKNSAAFLELAFAA 72
Query: 195 AKLGVI 200
+ LG +
Sbjct: 73 SYLGAV 78
>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain.
Length = 118
Score = 58.5 bits (142), Expect = 3e-10
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 218 VHFKGIILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDT 277
+ K +L +L + +E + S G + D K + R ++ +
Sbjct: 19 IQPKSDDKKLEKLTEELQEYYLSKPPESLPPKVG---DGCVAAFSEDGK--WYRAKILVS 73
Query: 278 SDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAG 324
D L + F+DY + + +P DL P+ P ++LP QAI+C LAG
Sbjct: 74 LDDGLVEVFFIDYGNTETVPLSDLRPL--PSEFASLPPQAIKCSLAG 118
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 63.4 bits (155), Expect = 6e-10
Identities = 85/385 (22%), Positives = 157/385 (40%), Gaps = 70/385 (18%)
Query: 643 IYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIG 696
I++SG+ G PK I+ N + + + +L + DVI + LP +HS G +
Sbjct: 788 IFSSGSEGEPKGVMLSHHNILSNIEQI------SDVFNLRNDDVILSSLPFFHSFGLTVT 841
Query: 697 TIPALILG-SSIAIRTKFSASNYFRDCAKYKCNAGIYIGE--MCR-YLLASKESEADYSH 752
L+ G + A + AK+ A I +G R YL K +
Sbjct: 842 LWLPLLEGIKVVYHPDPTDALGIAKLVAKH--RATILLGTPTFLRLYLRNKKLHPLMF-- 897
Query: 753 QVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE-------------GNANLVNMD 796
++++ G ++ ++ F ++F + I+E YGATE
Sbjct: 898 ASLRLVVAGAEKLKPEVADAFEEKFGI-RILEGYGATETSPVASVNLPDVLAADFKRQTG 956
Query: 797 NTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSD 856
+ EG+VG P+ + +V DP+T + G+I+ I
Sbjct: 957 SKEGSVG----------MPLPGVAVRIV------DPETFE--ELPPGEDGLIL--IGGPQ 996
Query: 857 PSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
+ GY E ++++++ G ++++GD +DE G+L DR + GE
Sbjct: 997 VMK---GYLGDPEKTAEVIKDI--DGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEM 1051
Query: 917 VSTMEVEATISKYLPYTE--FTVYGVKVGDLDGRAG-MIAIVDTSNQVDLKLLVQGL-DA 972
V VE ++K L E F V V D + G + ++ T D++ L + + ++
Sbjct: 1052 VPLGAVEEELAKALGGEEVVFAVTAVP----DEKKGEKLVVLHTCGAEDVEELKRAIKES 1107
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKI 997
LP +P ++A+ + G+ K+
Sbjct: 1108 GLPNLWKPSRYFKVEALPLLGSGKL 1132
>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. The fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family was shown catalyzing the
long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified from
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes uncharacterized FACS
proteins.
Length = 517
Score = 62.6 bits (153), Expect = 7e-10
Identities = 46/187 (24%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
++A L+ G K GD +A + N ++ ++ +G + +N L + + + I+
Sbjct: 36 RRLANALESLGVKPGDRVATLAWNTHRHLELYFAVPGMGAVLHTLNPRLSPEQIAYIINH 95
Query: 576 VKSKAIIVSALYYPEIEAIRESIPDVKLFLL----DETKPDLPNL---SDLMK-TTPASE 627
+ K I V + P +EAI +P VK ++ D + LPN+ +L++ +P E
Sbjct: 96 AEDKVIFVDDDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYE 155
Query: 628 VKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLL----GGQVGKHLLSLGSGDVIY 682
P ++ + YTSGTTG PK + + ++L L L D +
Sbjct: 156 ----WPELDENTAAGLCYTSGTTGNPKGVVYSHRSLVLHTLASALPD--SLGLSESDTVL 209
Query: 683 NCLPMYH 689
+PM+H
Sbjct: 210 PVVPMFH 216
Score = 50.3 bits (121), Expect = 4e-06
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 8/124 (6%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ V+DE GY+ DR D + GE +S++E+E + + E V GV
Sbjct: 396 DGWFRTGDVAVIDEDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVP- 454
Query: 943 GDLDGRAGM--IAIV--DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998
+ G +A+V +V + L++ L + + P V + I T K
Sbjct: 455 ---HEKWGERPLAVVVLKPGAKVTEEELLEHLAKKVAKWWLPDRVVFVDEIPKTSVGKFD 511
Query: 999 KIQL 1002
K L
Sbjct: 512 KKAL 515
>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar
to LC-FACS from Thermus thermophiles and Arabidopsis.
This family includes fatty acyl-CoA synthetases that can
activate medium to long-chain fatty acids. These enzymes
catalyze the ATP-dependent acylation of fatty acids in a
two-step reaction. The carboxylate substrate first
reacts with ATP to form an acyl-adenylate intermediate,
which then reacts with CoA to produce an acyl-CoA ester.
Fatty acyl-CoA synthetases are responsible for fatty
acid degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid. Also included
in this family are acyl activating enzymes from
Arabidopsis, which contains a large number of proteins
from this family with up to 63 different genes, many of
which are uncharacterized.
Length = 520
Score = 62.7 bits (153), Expect = 7e-10
Identities = 40/183 (21%), Positives = 69/183 (37%), Gaps = 8/183 (4%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
++A L G KGDV+A++ N P + G G + +NT L + ++
Sbjct: 41 RLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGAVLVPLNTRLDADDIAFILNHS 100
Query: 577 KSKAIIVSALYYP---EIEAIRESIPDVKLFLLDETKPDLPNLS----DLMKTTPASEVK 629
++K + V + E A+ + + ++ + + DL+ +
Sbjct: 101 EAKVLFVDQEFLSLAEEALALLSTKEIIDTEIIVISPAAEDSEEGDYEDLLAGGD-PDPL 159
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYH 689
P P D + YTSGTTG PK + + L + V LPM+H
Sbjct: 160 PIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLNALGNVIEWGMPDRPVYLWTLPMFH 219
Query: 690 SAG 692
G
Sbjct: 220 CNG 222
Score = 49.6 bits (119), Expect = 7e-06
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY E+ ++ F G +F SGD+ V+ GY+ KDR+ D GEN+S++EV
Sbjct: 386 GYYKNPEATEE----AFAGG--WFHSGDLAVVHPDGYIEIKDRSKDIIISGGENISSIEV 439
Query: 923 EATISKY 929
E + K+
Sbjct: 440 EGVLYKH 446
Score = 36.1 bits (84), Expect = 0.12
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 147 DETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE----YVGV-WLGA 194
D +T ++ + ++A L G KGDV+A++ N P + GV GA
Sbjct: 27 DRRYTYRETYDRCRRLASALSKLGIGKGDVVAVLAPNTPAMLEAHFGVPMAGA 79
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA
synthetase (LC-FACS). The members of this family are
eukaryotic fatty acid CoA synthetases that activate
fatty acids with chain lengths of 12 to 20. LC-FACS
catalyzes the formation of fatty acyl-CoA in a two-step
reaction: the formation of a fatty acyl-AMP molecule as
an intermediate, and the formation of a fatty acyl-CoA.
This is a required step before free fatty acids can
participate in most catabolic and anabolic reactions.
Organisms tend to have multiple isoforms of LC-FACS
genes with multiple splice variants. For example, nine
genes are found in Arabidopsis and six genes are
expressed in mammalian cells.
Length = 539
Score = 62.2 bits (152), Expect = 1e-09
Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 41/202 (20%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E + I L+ G K GD + + ENRPE++ ++ + L ++
Sbjct: 9 KEVEERALNIGSGLRALGLKPGDKIGIFAENRPEWIITEQACFSQSLVIVPLYDTLGEEA 68
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++ + + A VK++ +E L + ++V
Sbjct: 69 IEYILNETEISIVFCDA---------------VKVYSFEE----------LEELGKKNKV 103
Query: 629 KPSEPLQTSDSLLYI-YTSGTTGLPKAAIMP--NFKVLLGGQVGKHLLSLGSGDVIYNCL 685
P+ P + L I YTSGTTG PK ++ N + G +G DV + L
Sbjct: 104 PPTPP--KPEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAGINKIVPEFIGPTDVYISYL 161
Query: 686 PMYH-----------SAGGLIG 696
P+ H GG IG
Sbjct: 162 PLAHIFERVVENVCLYIGGRIG 183
>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the
class I adenylate forming enzyme family and is
homologous to fatty acyl-coenzyme A (CoA) ligases
(FACLs). However, FAALs produce only the acyl adenylate
and are unable to perform the thioester-forming
reaction, while FACLs perform a two-step catalytic
reaction; AMP ligation followed by CoA ligation using
ATP and CoA as cofactors. FAALs have insertion motifs
between the N-terminal and C-terminal subdomains that
distinguish them from the FACLs. This insertion motif
precludes the binding of CoA, thus preventing CoA
ligation. It has been suggested that the acyl adenylates
serve as substrates for multifunctional polyketide
synthases to permit synthesis of complex lipids such as
phthiocerol dimycocerosate, sulfolipids, mycolic acids,
and mycobactin.
Length = 547
Score = 61.8 bits (151), Expect = 1e-09
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 30/201 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN--TNLKK 566
A++D + IA LQ G GD + L+ ++V + G G I+ L +
Sbjct: 27 AELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAIAVPAPPPRRLGR 85
Query: 567 QP--LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTP 624
L ++ ++A++ ++ + A + + L L+ D +
Sbjct: 86 HLARLAAILADAGARAVLTTSAVLAALRAALAAPAALLLLLIAA---------DDLAALA 136
Query: 625 ASEVKPSEPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLSLGS 677
A++ P D + ++ YTSG+TG PK ++ N + + L
Sbjct: 137 AAD--WRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRAI------ARAFGLDP 188
Query: 678 GDVIYNCLPMYHSAGGLIGTI 698
DV + LP+YH GLIG +
Sbjct: 189 DDVGVSWLPLYHDM-GLIGGL 208
Score = 31.8 bits (73), Expect = 2.7
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 146 QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++ET T ++D + IA LQ G GD + L+ ++V + G G I
Sbjct: 20 EEETLTYAELDRRARAIAARLQALG-APGDRVLLLAPPGLDFVAAFFGCLYAGAI 73
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 61.0 bits (149), Expect = 2e-09
Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 33/163 (20%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++E +N++AR L+ G GDV+AL+ E PE V L K G +A + P
Sbjct: 16 AELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKAG--AAYV-------P 66
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPD--VKLFLLDETKP-----DLPNLSDLMK 621
L + YP E + + D ++ L DE+ D L L +
Sbjct: 67 LDPA---------------YPA-ERLAFMLEDSGARVLLTDESLAPLARADQLPLVILEE 110
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVL 663
A + P P +D L Y+ YTSG+TG PK +P+ V+
Sbjct: 111 ELDAEDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRGVV 153
Score = 49.1 bits (118), Expect = 9e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A + D + T +++E +N++AR L+ G GDV+AL+ E PE V L K
Sbjct: 1 PDAIALVYGDRSLTYAELNERANRLARRLRARGVGPGDVVALLLERSPELVVAILAILKA 60
Query: 198 G 198
G
Sbjct: 61 G 61
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated.
Length = 559
Score = 61.0 bits (149), Expect = 2e-09
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 30/226 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ +E + +A+ L G +KGD + + N PE+V AK+G I IN +
Sbjct: 47 REFNEEVDALAKGLLALGIEKGDRVGIWAPNVPEWVLTQFATAKIGAILVTINPAYRLSE 106
Query: 569 LVHSISTVKSKAIIVSALY----YPEIEAIRESIPDVK------------------LFLL 606
L ++++ KA+I + + Y + + E P++ +FL
Sbjct: 107 LEYALNQSGCKALIAADGFKDSDYVAM--LYELAPELATCEPGQLQSARLPELRRVIFLG 164
Query: 607 DETKPDLPNLSDLM---KTTPASEVKP-SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKV 662
DE P + N +L+ + +E+ L D + YTSGTTG PK A + + +
Sbjct: 165 DEKHPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNI 224
Query: 663 LLGG-QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSI 707
L G +G+ + L D + +P+YH G ++G + + G+++
Sbjct: 225 LNNGYFIGEA-MKLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATM 269
Score = 39.4 bits (93), Expect = 0.009
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 115 GTKRMAATNTTLVSEFKKSVKRRPNAPC--YYFQDETWTIKQIDEYSNKIARILQDDGFK 172
G + T+ ++ R P+ Y Q WT ++ +E + +A+ L G +
Sbjct: 7 GPTDVPLLEQTIGQLLDRTAARYPDREALVYRDQGLRWTYREFNEEVDALAKGLLALGIE 66
Query: 173 KGDVLALMCENRPEYVGVWLGAAKLGVI 200
KGD + + N PE+V AK+G I
Sbjct: 67 KGDRVGIWAPNVPEWVLTQFATAKIGAI 94
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as
O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or
MenE). O-succinylbenzoic acid-CoA synthase catalyzes
the coenzyme A (CoA)- and ATP-dependent conversion of
o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The
reaction is the fourth step of the biosynthesis pathway
of menaquinone (vitamin K2). In certain bacteria,
menaquinone is used during fumarate reduction in
anaerobic respiration. In cyanobacteria, the product of
the menaquinone pathway is phylloquinone
(2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used
exclusively as an electron transfer cofactor in
Photosystem 1. In green sulfur bacteria and
heliobacteria, menaquinones are used as loosely bound
secondary electron acceptors in the photosynthetic
reaction center.
Length = 407
Score = 57.6 bits (140), Expect = 2e-08
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 59/208 (28%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D+ +++A L G ++GD +AL+ +N E++ ++L +LG + +N L ++
Sbjct: 5 QELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRLPQE- 63
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
E++ L + +PDL + ++
Sbjct: 64 ---------------------ELQQ-----------QLADLQPDLDRPATII-------- 83
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVG-KHLLSLGSGDVIYNCLPM 687
+TSG+TG PKA + + L G L L D LP+
Sbjct: 84 ---------------FTSGSTGKPKAVVH-TWGNHLASARGSAENLGLTPDDNWLLSLPL 127
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSA 715
+H GL + +L+ G ++ + KF A
Sbjct: 128 FH-VSGLAIVMRSLLAGGALVLPDKFDA 154
Score = 44.1 bits (105), Expect = 3e-04
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 849 IGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGD 908
GEI PS F GY Q + + + G +F +GD+ +D GYLY R D
Sbjct: 260 DGEILVRGPSL-FLGYLP----QGGLTPPLDEDG--WFHTGDLGYLDAEGYLYVLGRRDD 312
Query: 909 TYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGM--IAIVDTSN-QVDLKL 965
GEN+ E+EA + ++ E V GV D G +A V ++ V ++
Sbjct: 313 LIISGGENIYPEEIEAVLLQHPAVEEAAVVGVP----DDEWGQRPVAFVVPNDDPVSVEE 368
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQN 1004
L L L Y RP + + + KI + L+
Sbjct: 369 LQAFLADKLAKYKRPKRWYPLPELPRNASGKIDRAALRQ 407
Score = 38.7 bits (91), Expect = 0.017
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVW 208
+ T +++D+ +++A L G ++GD +AL+ +N E++ ++L +LG + N
Sbjct: 1 SLTFQELDQRVSQLAEQLAALGVRRGDRVALLAKNSIEFLLLFLALLRLGAVVLPLNPRL 60
Query: 209 LAQLLGKKM 217
+ L +++
Sbjct: 61 PQEELQQQL 69
>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated.
Length = 487
Score = 57.5 bits (139), Expect = 2e-08
Identities = 93/483 (19%), Positives = 171/483 (35%), Gaps = 59/483 (12%)
Query: 528 KKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY 587
K +A++ ENR E++ ++ GAA G ++ K+ L ++ + I+
Sbjct: 48 SKNKTIAILLENRIEFLQLFAGAAMAGWTCVPLDIKWKQDELKERLAISNADMIVTERYK 107
Query: 588 YPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYI-YTS 646
++ + ++ +DE K + + P Y+ +TS
Sbjct: 108 LNDL-----PDEEGRVIEIDEWKRMIEKYLPTYAPIENVQNAP----------FYMGFTS 152
Query: 647 GTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706
G+TG PKA + L H + D + + HS L G I L +G +
Sbjct: 153 GSTGKPKAFLRAQQSWLHSFDCNVHDFHMKREDSVLIAGTLVHSL-FLYGAISTLYVGQT 211
Query: 707 IAIRTKFSASNYFRDCAKYKCNAGIY-IGEMCRYLLASKESEADYSHQVVKMIGVGMRGD 765
+ + KF N D + + + +Y + M L +K+I G + +
Sbjct: 212 VHLMRKFI-PNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWE 266
Query: 766 IWAK--FVKRFHVQTIIEFYGATEGN--ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQF 821
AK F + EFYGA+E + LV+ ++ P + H V +
Sbjct: 267 AEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERR-----PNSVGRPFHNVQV--- 318
Query: 822 DLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP 881
I + Q G IG + P F GY +++
Sbjct: 319 ------RICNEAGEEV------QKGE-IGTVYVKSPQF-FMGYIIGGVLAREL------N 358
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
D + D+ DE G++Y R + + G N+ E+E+ + ++ E V GV
Sbjct: 359 ADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVP 418
Query: 942 VGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQ 1001
D G + + L L ++ P + I T + KI +++
Sbjct: 419 ----DSYWGEKPVAIIKGSATKQQLKSFCLQRLSSFKIPKEWHFVDEIPYTNSGKIARME 474
Query: 1002 LQN 1004
++
Sbjct: 475 AKS 477
Score = 30.9 bits (70), Expect = 4.1
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
+ E+KK +PN D T K E K+A L + K +A++ ENR
Sbjct: 2 GITKEYKKHASLQPNKIAIKENDRVLTYKDWFESVCKVANWLNEKE-SKNKTIAILLENR 60
Query: 185 PEYVGVWLGAAKLG 198
E++ ++ GAA G
Sbjct: 61 IEFLQLFAGAAMAG 74
>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to
LC-FACS from Thermus thermophiles. This family includes
fatty acyl-CoA synthetases that can activate
medium-chain to long-chain fatty acids. They catalyze
the ATP-dependent acylation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. Fatty
acyl-CoA synthetases are responsible for fatty acid
degradation as well as physiological regulation of
cellular functions via the production of fatty acyl-CoA
esters. The fatty acyl-CoA synthetase from Thermus
thermophiles in this family has been shown to catalyze
the long-chain fatty acid, myristoyl acid, while another
member in this family, the AlkK protein identified in
Pseudomonas oleovorans, targets medium chain fatty
acids. This family also includes an uncharacterized
subgroup of FACS.
Length = 509
Score = 56.7 bits (136), Expect = 4e-08
Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 5/178 (2%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
++ L+ G GD +A + N ++ + +G + N L + + + ++
Sbjct: 36 RLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHA 95
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQT 636
+ K ++ P +EAIR + V+ F++ + K E +
Sbjct: 96 EDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP--EGYLAY-EEALGEEADPVRVPE 152
Query: 637 SDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV-IYNC-LPMYHSAG 692
+ YT+GTTGLPK + + ++L + + + +PM+H
Sbjct: 153 RAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNA 210
Score = 38.6 bits (89), Expect = 0.018
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 863 GYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEV 922
GY +E+ + + G +F +GD+ V DE GY+ KDR D + GE +S++++
Sbjct: 373 GYYGNEEATRS---ALTPDG--FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDL 427
Query: 923 EATISKYLPYTEFTVYGVKV 942
E + V V
Sbjct: 428 ENAL-----MGHPKVKEAAV 442
Score = 32.4 bits (73), Expect = 1.7
Identities = 9/70 (12%), Positives = 27/70 (38%)
Query: 145 FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLS 204
+ T ++ + + ++ L+ G GD +A + N ++ + +G + +
Sbjct: 20 GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 79
Query: 205 NVVWLAQLLG 214
N + +
Sbjct: 80 NPRLSPKEIA 89
>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA
synthetase like family (ACS). This family is most
similar to acetyl-CoA synthetase. Acetyl-CoA synthetase
(ACS) catalyzes the formation of acetyl-CoA from
acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is only present in bacteria.
Length = 443
Score = 56.7 bits (137), Expect = 4e-08
Identities = 42/177 (23%), Positives = 70/177 (39%), Gaps = 46/177 (25%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKKQ 567
++ E S + A +L G KG+ + + PE YV LG KLG + + + +
Sbjct: 4 QELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAA-LGTLKLGAVYGPLFSAFGPE 62
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
P+ + ++K +I + PE L + T P+ P
Sbjct: 63 PIRDRLELGEAKVLITT----PE--------------LYERTDPEDP------------- 91
Query: 628 VKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+LL+ +TSGTTG PK + + V+ +++L L DV Y C
Sbjct: 92 -----------ALLH-FTSGTTGKPKGVLHVHRAVVAHYATARYVLDLRPDDV-YWC 135
Score = 44.7 bits (106), Expect = 2e-04
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 150 WTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVIS 201
++ +++ E S + A +L G KG+ + + PE YV LG KLG +
Sbjct: 1 YSYQELKELSARFANVLASLGVGKGERVFTLLPRSPELYVAA-LGTLKLGAVY 52
Score = 37.0 bits (86), Expect = 0.047
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
D ++L+GD+ DE GY +F R D + G V EVE+
Sbjct: 319 DGWYLTGDLAYRDEDGYFWFVGRADDVIKTAGHLVGPFEVES 360
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 56.5 bits (136), Expect = 6e-08
Identities = 53/352 (15%), Positives = 111/352 (31%), Gaps = 32/352 (9%)
Query: 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVK 505
+ LL E + +L + + + +A +
Sbjct: 196 DAPRTSLSALPLLLPSEREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLT- 254
Query: 506 NLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLK 565
A++D +N++AR+L G G+ +A++ + E V L K G ++
Sbjct: 255 --YAELDARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAGAAYVPLDPLYP 312
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625
+ L + + + ++ A L LP L+ +
Sbjct: 313 AERLAYILEDSRPTLLLTQAH-------------------LRVDDVGLPGLALDDALSEI 353
Query: 626 SEVKPSEPLQTSDSLLY-IYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNC 684
+ P D+L Y IYTSG+TG PK + + + L + D +
Sbjct: 354 PDTDPIPQALLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARFGLDADDRVLAL 413
Query: 685 LPMYHSAGGLIGTIPALILGSSIAIRTK---FSASNYFRDCAKYKCNAGIYIGEMCRYLL 741
+ A AL+ G+ + + + + + + R LL
Sbjct: 414 ASLSFDASVF-EIFGALLEGARLVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLL 472
Query: 742 ASKESEADYSHQV-VKMIGVG---MRGDIWAKFVKRFHVQTIIE-FYGATEG 788
+ + S ++ + G + + + ++ + + YG TE
Sbjct: 473 LAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEA 524
Score = 44.6 bits (105), Expect = 3e-04
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 1/102 (0%)
Query: 98 TLPRDVNIIYSLSRAILGTKRMAA-TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQID 156
T + ++ R + T+ F++ P+A + T ++D
Sbjct: 200 TSLSALPLLLPSEREVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELD 259
Query: 157 EYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198
+N++AR+L G G+ +A++ + E V L K G
Sbjct: 260 ARANRLARLLISLGVGPGETVAILADRSLELVVALLAVLKAG 301
>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated.
Length = 504
Score = 56.0 bits (136), Expect = 7e-08
Identities = 124/501 (24%), Positives = 194/501 (38%), Gaps = 76/501 (15%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+D S ++A +L G K GD +A+ E PE + ++L + G + +NT
Sbjct: 32 GDLDAASARLANLLVALGVKPGDRVAVQVEKSPEALALYLATLRAGAVFLPLNTAYTLAE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS-E 627
L + I + ++ + + I + + LD +L + P E
Sbjct: 92 LDYFIGDAEPALVVCDPANFAWLSKIAAAAGAPHVETLDADGTG--SLLEAAAAAPDDFE 149
Query: 628 VKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLP 686
P D L I YTSGTTG K A++ + +L DV+ + LP
Sbjct: 150 TVPRGA----DDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRFTPDDVLIHALP 205
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRY--LLASK 744
++H+ G + T AL+ G+S+ KF + A + +G Y LL
Sbjct: 206 IFHTHGLFVATNVALLAGASMIFLPKFDPDAVLALMPR----ATVMMGVPTFYTRLLQ-- 259
Query: 745 ESEADYSHQVVKMIGVGMR----------GDIWAKFVKRF-HVQTIIEFYGATEGNANLV 793
E + + MR + +F +R H I+E YG TE N N
Sbjct: 260 --EPRLTREAAA----HMRLFISGSAPLLAETHREFQERTGH--AILERYGMTETNMNTS 311
Query: 794 NMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850
N + E G VG P L V++ + DP+TG + GMI
Sbjct: 312 NPYDGERRAGTVG-----FP--LPGVSLR---------VTDPETGA--ELPPGEIGMI-- 351
Query: 851 EIKQSDPSRHFYGY---ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
E+K P+ F GY +K + F+ D +F++GD+ +DE GY++ R
Sbjct: 352 EVK--GPNV-FKGYWRMPEKTAEE-------FRA-DGFFITGDLGKIDERGYVHIVGRGK 400
Query: 908 DTYRWKGENVSTMEVEATISKYLP-YTEFTVYGVKVGDLDGRAGMIAIVDTSNQ-VDLKL 965
D G NV EVE I + LP E V GV D G +V +D
Sbjct: 401 DLIISGGYNVYPKEVEGEIDE-LPGVVESAVIGVPHPDF-GEGVTAVVVPKPGAALDEAA 458
Query: 966 LVQGLDANLPAYARPLFVRIM 986
++ L L + +P V +
Sbjct: 459 ILAALKGRLARFKQPKRVFFV 479
>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase;
Provisional.
Length = 1140
Score = 56.5 bits (137), Expect = 8e-08
Identities = 115/522 (22%), Positives = 191/522 (36%), Gaps = 111/522 (21%)
Query: 519 ARILQD---DGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN-----TNLKKQPLV 570
A +L G+ + +M N + G + A+IN N+
Sbjct: 668 AFVLGRKLKKNTPPGENVGVMLPNANGAAVTFFALQSAGRVPAMINFSAGIANILSACKA 727
Query: 571 HSISTV-KSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSD-----LMKTTP 624
+ TV S+A I A P IEA+ I ++ L++ + + L+D L P
Sbjct: 728 AQVKTVLTSRAFIEKARLGPLIEALEFGI---RIIYLEDVRAQI-GLADKIKGLLAGRFP 783
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG-GQVGKHLLSLGSGDVIYN 683
+P D + ++TSG+ G PK ++ + +L QV + D ++N
Sbjct: 784 LVYFCNRDP---DDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-DFSPEDKVFN 839
Query: 684 CLPMYHSAGGLIGT---------------------IPALI--LGSSIAIRTKFSASNYFR 720
LP++HS G G IP LI ++I T + Y
Sbjct: 840 ALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGY-- 897
Query: 721 DCAKYKCNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTII 780
A+Y A Y RY+ A E + + Q W + +F ++ I+
Sbjct: 898 --ARY---AHPYDFRSLRYVFAGAEKVKEETRQT------------WME---KFGIR-IL 936
Query: 781 EFYGATEGNANL-VN--MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLC 837
E YG TE + +N M N G VG + + L PV I D L
Sbjct: 937 EGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGI-----------DEGGRLF 985
Query: 838 IRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDEL 897
+R P +++G ++ +P +LE P D ++ +GD++ +DE
Sbjct: 986 VR----GPNVMLGYLRAENPG---------------VLE---PPADGWYDTGDIVTIDEE 1023
Query: 898 GYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG-MIAIVD 956
G++ K R + GE +S VE ++ P + D R G I ++
Sbjct: 1024 GFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIP----DARKGERIILLT 1079
Query: 957 TSNQVDLK-LLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997
T++ L A P + + I + GT KI
Sbjct: 1080 TASDATRAAFLAHAKAAGASELMVPAEIITIDEIPLLGTGKI 1121
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 54.7 bits (132), Expect = 2e-07
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 21/208 (10%)
Query: 518 IARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA-------LINTNLKKQPLV 570
+A+ L D G G + ++ N E+ + L A + GV +A L++ + K L
Sbjct: 93 LAQALLDLGLDPGRPVMILSGNSIEHALMTLAAMQAGVPAAPVSPAYSLMSHDHAK--LK 150
Query: 571 HSISTVKSKAIIV--SALYYPEIEAIRESIPDVKLFLLDETKPDLPNLS--DLMKTTPAS 626
H VK + + A + + A+ DV + + + +++ DL T P +
Sbjct: 151 HLFDLVKPRVVFAQSGAPFARALAALDLL--DVTVVHVTGPGEGIASIAFADLAATPPTA 208
Query: 627 EVKPSEPLQTSDSLL-YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD----VI 681
V + T D++ Y++TSG+TG+PKA I +++ + L D V
Sbjct: 209 AVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ-RMMCANIAMQEQLRPREPDPPPPVS 267
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAI 709
+ +P H+ GG L G ++ I
Sbjct: 268 LDWMPWNHTMGGNANFNGLLWGGGTLYI 295
>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA. PimA, a member of
a large family of acyl-CoA ligases, is found in a
characteristic operon pimFABCDE for the metabolism of
pimelate and related compounds. It is found, so far, in
Bradyrhizobium japonicum and several strains of
Rhodopseudomonas palustris. PimA from R. palustris was
shown to be active as a CoA ligase for C(7) to C(14)
dicarboxylates and fatty acids.
Length = 541
Score = 54.2 bits (130), Expect = 3e-07
Identities = 107/443 (24%), Positives = 184/443 (41%), Gaps = 60/443 (13%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVS- 584
G+ K +AL N P++ + GA K G ++ ++ L H +S ++ +I S
Sbjct: 67 GYGKDASVALYLGNTPDHPINFFGALKAGARVVHLSPLDGERALSHKLSDSGARLLITSD 126
Query: 585 --ALYYPEIEAIRESIPDVKLFLLDET-----KPDLPNLSDLMKTTPASEVKPSEP---- 633
AL ++ + + + D + D+ P P +D T A VK +
Sbjct: 127 LAALLPMALKFLEKGLLDRLIVCEDDNWGKVGTPQAPIPADPRIVTYADFVKGAAAPAEW 186
Query: 634 --LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV----GKHLLSLGSGDV--IYNCL 685
+ D L YT GTTGLPK A++ + + + GK + GDV + L
Sbjct: 187 PAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPSRA-TRGDVERVICVL 245
Query: 686 PMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYL-LASK 744
P++H + + +L G I++ +F + FRD + + A ++ G ++ LA+
Sbjct: 246 PLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKR--ATVFPGVPTMWIALAND 303
Query: 745 ESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE----GNANLVNMDN 797
S + IG G + ++ A F +R + +G TE G + +
Sbjct: 304 PSLEKRDLSSLATIGSGGAPLPVEV-ANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPD 362
Query: 798 TEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP 857
G++G+ +LP I+ D+V + DP L PG +GE++ P
Sbjct: 363 KPGSIGL---MLPG-------IELDVVS---LDDPTKVL-------PPGE-VGELRIRGP 401
Query: 858 SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENV 917
+ GY ++ E + GD+ FL+GD+ MD GY + DR D G NV
Sbjct: 402 NVT-RGYWNRPEESAEAF-----VGDR-FLTGDIGYMDTDGYFFLVDRKKDMIISGGFNV 454
Query: 918 STMEVEATISKYLPYTEFTVYGV 940
+E I ++ E V G+
Sbjct: 455 YPQMIEQAIYEHPGVQEVIVIGI 477
>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated.
Length = 540
Score = 54.2 bits (130), Expect = 3e-07
Identities = 57/237 (24%), Positives = 102/237 (43%), Gaps = 19/237 (8%)
Query: 477 LEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALM 536
L+ +R + EA R + +A + L A++ A L+ +G + ++
Sbjct: 17 LDRVFEQARQQPEAIALRRCDGTSALRYRELVAEVGGL----AADLRAQSVSRGSRVLVI 72
Query: 537 CENRPE-YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIR 595
+N PE Y+ V L AKLG I+ + + NL + A +V+ P +
Sbjct: 73 SDNGPETYLSV-LACAKLGAIAVMADGNLPIAAIERFCQITDPAAALVA----PGSKMAS 127
Query: 596 ESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEP-LQTSDSLLYIYTSGTTGLPKA 654
++P+ L + D+ ++ + + + + D L I+TSGTTG PKA
Sbjct: 128 SAVPEA-LHSIPVIAVDIAAVTRESEHSLDAASLAGNADQGSEDPLAMIFTSGTTGEPKA 186
Query: 655 AIMPN---FKV--LLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSS 706
++ N F V +L + G + ++ G+ Y+ LP H GGL + L+ G
Sbjct: 187 VLLANRTFFAVPDILQKE-GLNWVTWVVGETTYSPLPATH-IGGLWWILTCLMHGGL 241
>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated.
Length = 534
Score = 53.7 bits (129), Expect = 4e-07
Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 21/236 (8%)
Query: 496 TNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555
T D A + ++L +D+ + ++ R G GD +AL + E+V L A++ +
Sbjct: 38 TADRIAISYRDLARLVDDLAGQLTR----SGLLPGDRVALRMGSNAEFVVALLAASRADL 93
Query: 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN 615
+ ++ L ++ +++ A + + + + ++ P
Sbjct: 94 VVVPLDPALPIAEQRVRSQAAGARVVLIDADGPHDRAEPTTRWWPLTVNVGGDSGPSGGT 153
Query: 616 LSDLMKTTPASEVKPSEP--LQTSDSLLYIYTSGTTGLPK------AAIMPNFKVLLGGQ 667
LS + S P L+ D+++ ++T GTTGLPK A I + + ++ G
Sbjct: 154 LSVHLDAATEPTPATSTPEGLRPDDAMI-MFTGGTTGLPKMVPWTHANIASSVRAIITG- 211
Query: 668 VGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI--RTKFSASNYFRD 721
L D +P+YH G + + L G ++ + R +FSA ++ D
Sbjct: 212 -----YRLSPRDATVAVMPLYHGHGLIAALLATLASGGAVLLPARGRFSAHTFWDD 262
Score = 36.0 bits (83), Expect = 0.13
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 133 SVKRRPNAPCYYFQDETWTIKQID--EYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 190
+ R P AP + I D + +A L G GD +AL + E+V
Sbjct: 25 AATRLPEAPALVVTADRIAISYRDLARLVDDLAGQLTRSGLLPGDRVALRMGSNAEFVVA 84
Query: 191 WLGAAKLGVI 200
L A++ ++
Sbjct: 85 LLAASRADLV 94
>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily
similar to Acetoacetyl-CoA synthetase. This
uncharacterized acyl-CoA synthetase family is highly
homologous to acetoacetyl-CoA synthetase. However, the
proteins in this family exist in only bacteria and
archaea. AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms.
Length = 474
Score = 53.0 bits (128), Expect = 6e-07
Identities = 41/204 (20%), Positives = 73/204 (35%), Gaps = 47/204 (23%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++ N++A L G KGD + + PE V L AK+G I+ I +
Sbjct: 11 SELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAIAVPIFSGFGPDA 70
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++K +I + + + + DL +
Sbjct: 71 VATRLQDAEAKVLITADGFLRRGKRV-----------------DLKD------------- 100
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLL-GGQVGKHLLSLGSGDVIYNCLPM 687
D + IYTSGTTG PK + + + + L GD + M
Sbjct: 101 ---------DPAMIIYTSGTTGKPKGTVHTHAGFPVKAAKDIGFCFDLKPGDRLLWITDM 151
Query: 688 YHSAGGLIG---TIPALILGSSIA 708
G ++G + L+LG++I
Sbjct: 152 ----GWMMGPWLVLGGLLLGATIV 171
Score = 47.3 bits (113), Expect = 4e-05
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
TWT ++ N++A L G KGD + + PE V L AK+G I
Sbjct: 7 TWTYSELAREVNRLASGLAALGLGKGDRVGIYMPMIPEAVVALLAIAKIGAI 58
>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain. This
model represents a domain responsible for the specific
recognition of amino acids and activation as adenylyl
amino acids. The reaction catalyzed is aa + ATP ->
aa-AMP + PPi. These domains are usually found as
components of multi-domain non-ribosomal peptide
synthetases and are usually called "A-domains" in that
context (for a review, see ). A-domains are almost
invariably followed by "T-domains" (thiolation domains,
pfam00550) to which the amino acid adenylate is
transferred as a thiol-ester to a bound pantetheine
cofactor with the release of AMP (these are also called
peptide carrier proteins, or PCPs. When the A-domain
does not represent the first module (corresponding to
the first amino acid in the product molecule) it is
usually preceded by a "C-domain" (condensation domain,
pfam00668) which catalyzes the ligation of two amino
acid thiol-esters from neighboring modules. This domain
is a subset of the AMP-binding domain found in Pfam
(pfam00501) which also hits substrate--CoA ligases and
luciferases. Sequences scoring in between trusted and
noise for this model may be ambiguous as to whether they
activate amino acids or other molecules lacking an alpha
amino group.
Length = 409
Score = 52.6 bits (127), Expect = 6e-07
Identities = 38/181 (20%), Positives = 70/181 (38%), Gaps = 17/181 (9%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKK 566
++DE +N++AR L+ G GD +A++ E E V + L K G ++
Sbjct: 3 RELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAI-LAVLKAGAAYVPLDPAYPA 61
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
+ L + ++ ++ A+ + + L ++ +L L D A
Sbjct: 62 ERLAFILEDAGARLLLTD-------SALASRLAGLVLPVILLDPLELAALDD------AP 108
Query: 627 EVKPSEPLQTSDSLLY-IYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
P + D L Y IYTSG+TG PK ++ + ++ L D +
Sbjct: 109 APPPPDAPSGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRYGLDPDDRVLQFA 168
Query: 686 P 686
Sbjct: 169 S 169
Score = 30.7 bits (70), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 154 QIDEYSNKIARILQDD-GFKKGDVLALMCENRPE-YVGVWLGAAKLG 198
++DE +N++AR L+ G GD +A++ E E V + L K G
Sbjct: 4 ELDERANRLARHLRAAGGVGPGDRVAVLLERSAELVVAI-LAVLKAG 49
>gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic
organisms and have been implicated in protein-protein
interactions in which methylated protein substrates bind
to these domains. For example, the Tudor domain of
Survival of Motor Neuron (SMN) binds to symmetrically
dimethylated arginines of arginine-glycine (RG) rich
sequences found in the C-terminal tails of Sm proteins.
The SMN protein is linked to spinal muscular atrophy.
Another example is the tandem tudor domains of 53BP1,
which bind to histone H4 specifically dimethylated at
Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA
damage checkpoint signal.
Length = 48
Score = 46.8 bits (112), Expect = 6e-07
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVP 303
G LCLA+ D + R ++T + FVDY + + +P DL P
Sbjct: 1 GDLCLAKYSDDGKWYRAKITSILSDGKVEVFFVDYGNTEVVPLSDLRP 48
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a
family of nonribosomal peptide synthetases (NRPSs)
synthesizing toxins and antitumor agents. The
adenylation (A) domain of NRPS recognizes a specific
amino acid or hydroxy acid and activates it as an
(amino)-acyl adenylate by hydrolysis of ATP. The
activated acyl moiety then forms a thioester to the
enzyme-bound cofactor phosphopantetheine of a peptidyl
carrier protein domain. This family includes NRPSs that
synthesize toxins and antitumor agents; for example,
TubE for Tubulysine, CrpA for cryptophycin, TdiA for
terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for
Valinomycin. Nonribosomal peptide synthetases are large
multifunctional enzymes which synthesize many
therapeutically useful peptides. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and, in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 560
Score = 52.7 bits (127), Expect = 9e-07
Identities = 42/190 (22%), Positives = 75/190 (39%), Gaps = 27/190 (14%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL-GVISAL---------INTNLKK 566
+I L+ G K GD + L E ++V A L G + N + K
Sbjct: 51 RILAGLRALGLKPGDSVILQLERNEDFV-TAFWACVLGGFVPVPVAVPPTYDEPNAAVAK 109
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
L + + S I+ A + +R L+ + + + +L P +
Sbjct: 110 --LRNIWELLGSPVILTDAALVAALAGLRT------RAGLEALR--VLAIEELRSAPPDA 159
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLS-LGSGDVIYNCL 685
+ P+ P D L + TSG+TG+PK ++ + +L G ++ DV N +
Sbjct: 160 PLHPARPD---DPALLLLTSGSTGVPK-CVVLTHRNILARSAGTVQVNGFTPDDVSLNWM 215
Query: 686 PMYHSAGGLI 695
P+ H GG++
Sbjct: 216 PLDH-VGGIV 224
Score = 29.9 bits (68), Expect = 8.5
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 26/120 (21%)
Query: 118 RMAATNTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKK 173
TL +++ + P Y E + ++ E + +I L+ G K
Sbjct: 4 LPPGAPRTLEEALQRAAEHAPGRGITYIDADGSEEFQSYAELLEEAERILAGLRALGLKP 63
Query: 174 GDVLALMCENRPEYVGVWLGAAKLG------------------VISKLSNVVWLAQLLGK 215
GD + L E ++V A LG ++KL N +W +LLG
Sbjct: 64 GDSVILQLERNEDFV-TAFWACVLGGFVPVPVAVPPTYDEPNAAVAKLRN-IW--ELLGS 119
>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase.
Length = 567
Score = 52.2 bits (125), Expect = 1e-06
Identities = 116/534 (21%), Positives = 197/534 (36%), Gaps = 68/534 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ + ++A L G +A++ N P G G + +N L
Sbjct: 49 AQTYQRCRRLASALAKRSIGPGSTVAVIAPNIPAMYEAHFGVPMAGAVVNCVNIRLNAPT 108
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK--------LFLLDETKPDLPNLSD-- 618
+ + KS+ ++V ++ E + + + K L ++ + D +L
Sbjct: 109 IAFLLEHSKSEVVMVDQEFFTLAEEALKILAEKKKSSFKPPLLIVIGDPTCDPKSLQYAL 168
Query: 619 ----------LMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV 668
L P KP P S+ YTSGTT PK ++ + L
Sbjct: 169 GKGAIEYEKFLETGDPEFAWKP--PADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALS 226
Query: 669 GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK-- 726
+ + G V LPM+H G A + G++I +R + +A + A Y
Sbjct: 227 NALIWGMNEGAVYLWTLPMFHCNGWCFTWTLAALCGTNICLR-QVTAKAIYSAIANYGVT 285
Query: 727 --CNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGD---IWAKFVKRF---HVQT 778
C A + + + A K +VV ++ G ++A K F H
Sbjct: 286 HFCAAPVVLNTIVN---APKSETILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYG 342
Query: 779 IIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCI 838
+ E YG + A D+ +P L+ +++ +E + D KT +
Sbjct: 343 LSETYGPSTVCAWKPEWDS-------LPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPV 395
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
G +GEI + GY ++ ++ N +F SGD+ V G
Sbjct: 396 PAD----GKTMGEIVMRG-NMVMKGYLKNPKANEEAFAN------GWFHSGDLGVKHPDG 444
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAG-----MIA 953
Y+ KDR+ D GEN+S++EVE + + E +V V D R G +
Sbjct: 445 YIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASV----VARPDERWGESPCAFVT 500
Query: 954 IVDTSNQVDLKLLVQGL----DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ ++ D L + + LPAY P V + + T T KI+K L+
Sbjct: 501 LKPGVDKSDEAALAEDIMKFCRERLPAYWVPKSV-VFGPLPKTATGKIQKHVLR 553
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 51.9 bits (125), Expect = 2e-06
Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 19/206 (9%)
Query: 518 IARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA-------LINTNLKKQPLV 570
IA+ L D G L ++ N E+ + L A GV A L++ + K L
Sbjct: 38 IAQALLDLGLSAERPLMILSGNSIEHALLALAAMYAGVPVAPVSPAYSLLSKDFAK--LR 95
Query: 571 HSISTVKSKAIIVS--ALYYPEIEAIRESIPDVKLFLLD-ETKPDLPNLSDLMKTTPASE 627
H + A+ A + + A+ V + + + L+ T P +
Sbjct: 96 HIFDLLTPGAVFAEDGAAFARALAALGL--AGVPVVAVRGAPGGPAIAFAALLATPPTAA 153
Query: 628 VKPSEPLQTSDSLL-YIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL---SLGSGDVIYN 683
V + D++ Y++TSG+TGLPKA I + ++L Q V+ +
Sbjct: 154 VDAAFAAVGPDTVAKYLFTSGSTGLPKAVINTH-RMLCANQAMIAQCWPFLTEEPPVLVD 212
Query: 684 CLPMYHSAGGLIGTIPALILGSSIAI 709
LP H+ GG L G ++ I
Sbjct: 213 WLPWNHTFGGNHNFNMVLYNGGTLYI 238
>gnl|CDD|213308 cd05943, AACS, Acetoacetyl-CoA synthetase (acetoacetate-CoA ligase,
AACS). AACS is a cytosolic ligase that specifically
activates acetoacetate to its coenzyme A ester by a
two-step reaction. Acetoacetate first reacts with ATP to
form an acyl-adenylate intermediate, which then reacts
with CoA to produce an acyl-CoA ester. This is the first
step of the mevalonate pathway of isoprenoid
biosynthesis via isopentenyl diphosphate. Isoprenoids
are a large class of compounds found in all living
organisms. AACS is widely distributed in bacteria,
archaea and eukaryotes. In bacteria, AACS is known to
exhibit an important role in the metabolism of
poly-b-hydroxybutyrate, an intracellular reserve of
organic carbon and chemical energy by some
microorganisms. In mammals, AACS influences the rate of
ketone body utilization for the formation of
physiologically important fatty acids and cholesterol.
Length = 616
Score = 51.5 bits (124), Expect = 2e-06
Identities = 45/204 (22%), Positives = 81/204 (39%), Gaps = 33/204 (16%)
Query: 503 TVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562
+ L +Q+ ++A L+D G K GD +A N PE V L A +G I + +
Sbjct: 88 SWAELRSQVA----RLAAALRDLGVKPGDRVAGYLPNVPEAVIAMLATASIGAIWSSCSP 143
Query: 563 NLKKQPLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDVKLFLL------- 606
+ + ++ ++ K + Y +I I + +P ++ ++
Sbjct: 144 DFGVEAVLDRFGQIEPKVLFAVDGYVYNGKEHDRREKIAEIVKGLPSLEAVVVVPYLSSD 203
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTS-DSLLYI-YTSGTTGLPKAAIMPNFKVLL 664
+ + L+ + P E + D L+I Y+SGTTGLPK +
Sbjct: 204 AQPAALKFSALTLLWSLAGDRAAPLEFERLPFDHPLWILYSSGTTGLPKCIVHGA----- 258
Query: 665 GGQVGKHL------LSLGSGDVIY 682
GG + +HL L GD ++
Sbjct: 259 GGTLLQHLKEHGLHCDLRPGDRLF 282
Score = 31.4 bits (72), Expect = 3.4
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 135 KRRPNAPC-YYFQDETWTIKQI--DEYSNKIARI---LQDDGFKKGDVLALMCENRPEYV 188
+ N P Y E ++I E +++AR+ L+D G K GD +A N PE V
Sbjct: 66 RHADNDPAAIYAAGEDGERREISWAELRSQVARLAAALRDLGVKPGDRVAGYLPNVPEAV 125
Query: 189 GVWLGAAKLGVI 200
L A +G I
Sbjct: 126 IAMLATASIGAI 137
>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 365
Score = 50.4 bits (121), Expect = 3e-06
Identities = 88/392 (22%), Positives = 143/392 (36%), Gaps = 66/392 (16%)
Query: 636 TSDSLLYIYTSGTTGLPKAAIMPN---FKVLLGGQ-VGKHLLSL----------GSGDVI 681
++D L +YT GTTG+PK + F+VLLGG +L G+G
Sbjct: 2 SADDLYMLYTGGTTGMPKGVMWRQEDIFRVLLGGPDFATGEPTLEELAKQVAAGGAGTRF 61
Query: 682 YNCLPMYHSAGGLIGTIPALILGSSIAIRT--KFSASNYFRDCAKYKCNAGIYIGE-MCR 738
P+ H A G + AL G ++ + KF +R K++ N + +G+ R
Sbjct: 62 LPACPLMHGA-GQWLALSALFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDAFAR 120
Query: 739 YLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKR-----FHVQTIIEFYGATEGNANLV 793
LL + E+ Y ++ I G +W+ VK+ +++ GA+E
Sbjct: 121 PLLEALEAAGRYDLSSLRAISSS--GAMWSPEVKQGLLELLPNLALVDALGASETGGGGS 178
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
++ GA T ++ D E P + G I
Sbjct: 179 SVSRAGGAS---ATGKFELGPDTVVLDEDGSEVPPGSG------------EVGWI----- 218
Query: 854 QSDPSRHFY---GY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDT 909
+R GY D +++ K E G +Y + GD ++ G + R
Sbjct: 219 ----ARGGRVPLGYYKDPEKTAKTFRE---IDGVRYAVPGDFARVEADGTITLLGRGSVC 271
Query: 910 YRWKGENVSTMEVEATISKYLPYTEFTVYGVKV-GDLDGRAG--MIAIV--DTSNQVDLK 964
GE V EVE + K P V V G D R G ++A+V +DL
Sbjct: 272 INTGGEKVFPEEVEEAL-KAHP----DVADALVVGVPDERWGQRVVAVVQLRAGAGLDLA 326
Query: 965 LLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996
L +L Y P + ++ + + K
Sbjct: 327 ELRDHCRQHLAGYKLPRAIVVVDTVPRAPSGK 358
>gnl|CDD|233316 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme
catalyzes the first step of the mevalonate pathway of
IPP biosynthesis. Most bacteria do not use this pathway,
but rather the deoxyxylulose pathway [Central
intermediary metabolism, Other].
Length = 652
Score = 51.0 bits (122), Expect = 3e-06
Identities = 51/240 (21%), Positives = 97/240 (40%), Gaps = 39/240 (16%)
Query: 496 TNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV 555
T++ A T L Q+ +A L+ G + GD ++ N P+ V L A +G
Sbjct: 109 THEPAPVTWAELRRQV----ASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGA 164
Query: 556 ISALINTNLKKQPLVHSISTVKSKAII-VSALYY--------PEIEAIRESIPDVKL--- 603
I + + + + ++ ++ K + V Y ++ +R+ +P ++
Sbjct: 165 IWSSCSPDFGARGVLDRFQQIEPKLLFTVDGYRYNGKEHDRRDKVAEVRKELPTLRAVVH 224
Query: 604 --FLLDETK--PDLPNLSDLMKTTPASEVKPS--EPLQTSDSLLYIYTSGTTGLPKAAIM 657
+L P + DL T A++ E L L +++SGTTGLPK +
Sbjct: 225 IPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVH 284
Query: 658 PNFKVLLGGQVGKHL------LSLGSGDVIYNCLPMYHSAGGLIGT--IPALILGSSIAI 709
GG + +HL LG GD ++ Y + G ++ + L G+++ +
Sbjct: 285 SA-----GGTLVQHLKEHGLHCDLGPGDRLF----YYTTTGWMMWNWLVSGLATGATLVL 335
>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL). ABCL catalyzes the
initial step in the 2-aminobenzoate aerobic degradation
pathway by activating 2-aminobenzoate to
2-aminobenzoyl-CoA. The reaction is carried out via a
two-step process; the first step is ATP-dependent and
forms a 2-aminobenzoyl-AMP intermediate, and the second
step forms the 2-aminobenzoyl-CoA ester and releases the
AMP. 2-Aminobenzoyl-CoA is further converted to
2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by
2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been
purified from cells aerobically grown with
2-aminobenzoate as sole carbon, energy, and nitrogen
source, and has been characterized as a monomer.
Length = 487
Score = 50.6 bits (121), Expect = 4e-06
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
D + ++GD+ DE GY ++ R+ D G N++ EVE + + E V GV
Sbjct: 363 RDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEVEDALLTHPDVAECAVIGVP 422
Query: 942 VGDLDGRAGMIA---IVDTSNQVDLKLLVQGLD----ANLPAYARPLFVRIMKAIEMTGT 994
D G I IV +LL + L A + Y P + + A+ T T
Sbjct: 423 ----DEERGQIVCAHIVLRDGTKATELLAERLQDFVKAVIAPYKYPREINFVDALPKTQT 478
Query: 995 FKIKKIQLQ 1003
KI++ +L+
Sbjct: 479 GKIQRFRLR 487
Score = 45.6 bits (108), Expect = 1e-04
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 137 RPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAA 195
R N PC+ +ETWT + + + +N+IA +L +D G G+ + L N P V WL
Sbjct: 48 RGNRPCFRTFEETWTYQDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVL 107
Query: 196 KLGVI 200
K G I
Sbjct: 108 KAGAI 112
Score = 37.9 bits (88), Expect = 0.034
Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 51/151 (33%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
+ + +N+IA +L +D G G+ + L N P V WL K G I + T
Sbjct: 64 QDLLDRANRIAHVLVEDLGVVPGNRVLLRSANTPMLVACWLAVLKAGAIV--VTT----M 117
Query: 568 PLV--HSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625
PL+ ++T+ KA I AL D +L T D
Sbjct: 118 PLLRAKELTTIVDKARITHALC------------DKRL-----TAAD------------- 147
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
D L +TSGTTGLPK +
Sbjct: 148 ------------DVALIGFTSGTTGLPKGTM 166
>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of
siderophore-synthesizing nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. This family of
siderophore-synthesizing NRPS includes the third
adenylation domain of SidN from the endophytic fungus
Neotyphodium lolii, ferrichrome siderophore synthetase,
HC-toxin synthetase, and enniatin synthase. NRPSs are
large multifunctional enzymes which synthesize many
therapeutically useful peptides. These natural products
include antibiotics, immunosuppressants, plant and
animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions.
Length = 447
Score = 49.5 bits (119), Expect = 7e-06
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 133 SVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVW 191
+ P+A F D + T ++D +NK+A L G + GD++AL E P YV +
Sbjct: 1 RAQTHPDAVAVDFWDGSLTYAELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAI- 59
Query: 192 LGAAKLG 198
L K G
Sbjct: 60 LAVLKAG 66
Score = 43.4 bits (103), Expect = 6e-04
Identities = 33/151 (21%), Positives = 51/151 (33%), Gaps = 54/151 (35%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLKKQ 567
A++D +NK+A L G + GD++AL E P YV + L K G I+ + +
Sbjct: 21 AELDRRANKLAHHLISLGVRPGDIVALCLERSPWLYVAI-LAVLKAGAAYVPIDPSAPVE 79
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASE 627
L I + ++ S
Sbjct: 80 RLQFIIEDSGATVVLTS------------------------------------------- 96
Query: 628 VKPSEPLQTSDSLLY-IYTSGTTGLPKAAIM 657
+ D Y IYTSG+TG PK ++
Sbjct: 97 --------SPDDPAYVIYTSGSTGKPKGVVI 119
Score = 36.8 bits (86), Expect = 0.056
Identities = 31/133 (23%), Positives = 53/133 (39%), Gaps = 15/133 (11%)
Query: 881 PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGV 940
PG + + +GD++ E G L F R D + +G+ + E+EA + V +
Sbjct: 320 PGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRGQRIELGEIEAVLRALPGVVVAAVVLL 379
Query: 941 KVGD----------LDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIE 990
+DG AG VD+ LL L LP+Y P + +
Sbjct: 380 LDDPGGKQLVAFLAVDGAAG-----GEPADVDIALLRSALRERLPSYMVPSVYVPLDELP 434
Query: 991 MTGTFKIKKIQLQ 1003
+T + K+ + L+
Sbjct: 435 LTASGKVDRKALR 447
>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.
Length = 557
Score = 49.6 bits (119), Expect = 8e-06
Identities = 129/568 (22%), Positives = 205/568 (36%), Gaps = 135/568 (23%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY-VGVWLGAAKLGVISALINTNLKKQ 567
++DE S +A LQ G KG +A+M N +Y V + AA L ++N N
Sbjct: 52 GELDELSRALAAWLQSRGLAKGARVAIMMPNVLQYPVAI---AAVLRAGYVVVNVNPLYT 108
Query: 568 P--LVHSISTVKSKAIIVSALYYPEIEAI--RESIPDVKL---------------FLLDE 608
P L H + ++AI+V + ++ + + ++ V + F++
Sbjct: 109 PRELEHQLKDSGAEAIVVLENFATTVQQVLAKTAVKHVVVASMGDLLGFKGHIVNFVVRR 168
Query: 609 TKPDLPNLS--------DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNF 660
K +P S D + KP L D YT GTTG+ K A + +
Sbjct: 169 VKKMVPAWSLPGHVRFNDALAEGARQTFKP-VKLGPDDVAFLQYTGGTTGVSKGATLLHR 227
Query: 661 KVLLGGQVGKHLLSLGSG--------DVIYNC-LPMYHSAGGLIGTIPALILGSSIAIRT 711
++ V + L + + C LP+YH I AL + + +RT
Sbjct: 228 NIV--ANVLQMEAWLQPAFEKKPRPDQLNFVCALPLYH--------IFALTVCGLLGMRT 277
Query: 712 KFSASNYF----RDCA-------KYKCNAGIYIGEMCRYLLASKE-SEADYSHQVVKMIG 759
N RD KY+ + + + LL + + + D+S +V G
Sbjct: 278 --GGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVA-NG 334
Query: 760 VGMRGDIWAKFVKRFHVQT---IIEFYGATE----GNANLVNMDNTEGAVGIIPTLLPTF 812
GM + +R+ T I E YG +E N V+ G +G+
Sbjct: 335 GGMA--VQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGL-------- 384
Query: 813 LHPVAIIQFDLVENQPIRDPKTGLCIRCK--YNQPGMIIGEIKQSDPSRHFYGYADKKES 870
P+ P T + IR + P GEI P + GY ++ +
Sbjct: 385 ---------------PL--PSTEVSIRDDDGNDLPLGEPGEICIRGP-QVMAGYWNRPDE 426
Query: 871 QKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYL 930
K++ D +F +GD+ VMDE GY DR D G NV E+E ++ +
Sbjct: 427 TAKVMT-----ADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHP 481
Query: 931 PYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLD-------------ANLPAY 977
E GV D +G +KL V D L Y
Sbjct: 482 GVLEVAAVGVP----DEHSGEA----------VKLFVVKKDPALTEEDVKAFCKERLTNY 527
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
RP FV + T KI + +L++
Sbjct: 528 KRPKFVEFRTELPKTNVGKILRRELRDG 555
Score = 38.8 bits (91), Expect = 0.017
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 120 AATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179
A+ +L ++S ++ + P + + T ++DE S +A LQ G KG +A+
Sbjct: 19 ASQYPSLADLLEESFRQYADRPAFICMGKAITYGELDELSRALAAWLQSRGLAKGARVAI 78
Query: 180 MCENRPEY 187
M N +Y
Sbjct: 79 MMPNVLQY 86
>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional.
Length = 516
Score = 49.6 bits (118), Expect = 8e-06
Identities = 103/510 (20%), Positives = 184/510 (36%), Gaps = 77/510 (15%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++ + +AR L DG G + +MC N +V LG I+T + L
Sbjct: 65 ELQRATESLARRLTRDGVAPGRAVGVMCRNGRGFVTAVFAVGLLGADVVPISTEFRSDAL 124
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
++ ++ + I +++ ++D T +E
Sbjct: 125 AAALRAHHISTVVADNEFAERIAGADDAV-----AVID-------------PATAGAEES 166
Query: 630 PSEPLQTSDSLLYIYTSGTTGLPKAAI-MPNFKVLLGGQVGKHLLS---LGSGDVIYNCL 685
P + + + TSGTTG PK P + +G V +L L +G I +
Sbjct: 167 GGRPAVAAPGRIVLLTSGTTGKPKGVPRAPQLRSAVG--VWVTILDRTRLRTGSRISVAM 224
Query: 686 PMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEM-CRYL-LA 742
PM+H G G++ + + LG ++ F A + ++ +A + + R L L
Sbjct: 225 PMFHGLGLGML--MLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILELP 282
Query: 743 SKESEADYSHQVVKMIGVGMRGDIWAKFVKRF---HVQTIIEFYGATE-------GNANL 792
+ + Q+ ++ G R D +RF + + YG+TE A+L
Sbjct: 283 PRVRARNPLPQLRVVMSSGDRLD--PTLGQRFMDTYGDILYNGYGSTEVGIGALATPADL 340
Query: 793 VNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEI 852
+ T G P PV I+ + N+P+ TG + GE+
Sbjct: 341 RDAPETVGK--------PVAGCPVRILDRN---NRPVGPRVTGRI---------FVGGEL 380
Query: 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
+ Y D K +++ + GD M +D G L+ R D
Sbjct: 381 AGT-------RYTDG--GGKAVVDGMTSTGD-------MGYLDNAGRLFIVGREDDMIIS 424
Query: 913 KGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDA 972
GENV VE ++ + + V GV R ++ + VD L L
Sbjct: 425 GGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKD 484
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ + +P + I+ +I T K+ + +L
Sbjct: 485 RVSRFEQPRDINIVSSIPRNPTGKVLRKEL 514
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family
protein.
Length = 696
Score = 49.3 bits (118), Expect = 1e-05
Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585
G K + +A+ + R E++ G + + I +L ++ L HS++ + +I +
Sbjct: 127 GHNKEERVAIFADTRAEWLIALQGCFRQNITVVTIYASLGEEALCHSLNETEVTTVICDS 186
Query: 586 LYYPEIEAIRESIPDVK-LFLLDETKPDLPN------------LSDLMKTTPASEVKPSE 632
++ I + VK + +D+ D + S++ K + V P
Sbjct: 187 KQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDL 246
Query: 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL-LGGQVGKHLLSLGSGDVIYNCLPMYH-- 689
P +D + +YTSG+TGLPK +M + ++ V + LG DV LP+ H
Sbjct: 247 PSP-NDIAVIMYTSGSTGLPKGVMMTHGNIVATVAGVMTVVPKLGKNDVYLAYLPLAHIL 305
Query: 690 ---------SAGGLIGTIPALIL 703
+ G IG L L
Sbjct: 306 ELAAESVMAAVGAAIGYGSPLTL 328
>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
Length = 573
Score = 48.8 bits (117), Expect = 1e-05
Identities = 60/237 (25%), Positives = 92/237 (38%), Gaps = 39/237 (16%)
Query: 500 AATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISAL 559
A TT L Q+ + A L+ G + GD +A++ N P+++ + +LG +
Sbjct: 56 ATTTYAELGKQVR----RAAAGLRALGVRPGDRVAIVLPNCPQHIVAFYAVLRLGAVVVE 111
Query: 560 INTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK--P------ 611
N L H ++ IV P +E +R + P + ++ P
Sbjct: 112 HNPLYTAHELEHPFEDHGARVAIVWDKVAPTVERLRRTTPLETIVSVNMIAAMPLLQRLA 171
Query: 612 -DLPNLSDLMK-----TTPASEVKPSEPLQTS-----------------DSLLYIYTSGT 648
LP + L K T PA P E L + D L +YTSGT
Sbjct: 172 LRLP-IPALRKARAALTGPAPGTVPWETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGT 230
Query: 649 TGLPKAAIMPNFKVLLGGQVGKHLLS-LGSGD-VIYNCLPMYHSAG-GLIGTIPALI 702
TG PK A + + + GK + LG G + LPM+H+ G L T+ I
Sbjct: 231 TGKPKGAQLTHRNLFANAAQGKAWVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSI 287
Score = 38.4 bits (90), Expect = 0.019
Identities = 20/77 (25%), Positives = 38/77 (49%)
Query: 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCEN 183
TTLV + +V R + P F T T ++ + + A L+ G + GD +A++ N
Sbjct: 32 TTLVDLYDNAVARFGDRPALDFFGATTTYAELGKQVRRAAAGLRALGVRPGDRVAIVLPN 91
Query: 184 RPEYVGVWLGAAKLGVI 200
P+++ + +LG +
Sbjct: 92 CPQHIVAFYAVLRLGAV 108
Score = 37.3 bits (87), Expect = 0.052
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 18/69 (26%)
Query: 861 FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR------TGDTYRWKG 914
F GY ++ E K D +F +GD++VM+E G++ DR TG G
Sbjct: 428 FKGYWNRPEETAKSFL------DGWFRTGDVVVMEEDGFIRIVDRIKELIITG------G 475
Query: 915 ENVSTMEVE 923
NV EVE
Sbjct: 476 FNVYPAEVE 484
>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Streptoalloteichus
tallysomycin biosynthesis genes. The adenylation (A)
domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the TLM biosynthetic
gene cluster from Streptoalloteichus that consists of
nine NRPS genes; the N-terminal module of TlmVI (NRPS-5)
and the starter module of BlmVI (NRPS-5) are comprised
of the acyl CoA ligase (AL) and acyl carrier protein
(ACP)-like domains, which are thought to be involved in
the biosynthesis of the beta-aminoalaninamide moiety.
Length = 476
Score = 48.4 bits (116), Expect = 2e-05
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 20/146 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ +N IA L+ G GD++A++ E + LG G I+ + +
Sbjct: 16 GELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQIVAVLGILLAGAAYVPIDPDQPAER 75
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
++ ++A++ + L + D+ P V
Sbjct: 76 RAAILARAGARAVLTDP------GLAQPEEAPDLLVVADDAAAAES------PAPPPPRV 123
Query: 629 KPSEPLQTSDSLLY-IYTSGTTGLPK 653
P D L Y I+TSG+TG PK
Sbjct: 124 DP-------DDLAYVIFTSGSTGEPK 142
Score = 37.6 bits (88), Expect = 0.040
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A T T ++ +N IA L+ G GD++A++ E + A L
Sbjct: 1 PDATAVIDGAGTLTYGELARRANAIAAALRAAGVAPGDLVAVVMPKGWEQI-----VAVL 55
Query: 198 GVI 200
G++
Sbjct: 56 GIL 58
>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1.
Length = 546
Score = 48.4 bits (115), Expect = 2e-05
Identities = 87/423 (20%), Positives = 174/423 (41%), Gaps = 39/423 (9%)
Query: 515 SNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIS 574
+ + A+ L+ G +KG V+ ++ N EY V LG G + + N + +
Sbjct: 65 TRRFAKALRSLGLRKGQVVVVVLPNVAEYGIVALGIMAAGGVFSGANPTALESEIKKQAE 124
Query: 575 TVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK-PDLPNLSDLMKTTP-ASEVKPSE 632
+K I+ + Y +++ + + + +L E K N +L++ A + +E
Sbjct: 125 AAGAKLIVTNDTNYGKVKGL-----GLPVIVLGEEKIEGAVNWKELLEAADRAGDTSDNE 179
Query: 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS---GDVI-YNCLPMY 688
+ +D ++SGTTG+ K ++ + ++ + L S+G G V+ +P +
Sbjct: 180 EILQTDLCALPFSSGTTGISKGVMLTHRNLV--ANLCSSLFSVGPEMIGQVVTLGLIPFF 237
Query: 689 HSAGGLIGTIPALILGS-SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASK-ES 746
H G+ G A + + + ++F + + + + + L+ +
Sbjct: 238 HIY-GITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVE 296
Query: 747 EADYSH---QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVG 803
E D S Q + + ++ F +F + E YG TE + + + E G
Sbjct: 297 EFDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHG 356
Query: 804 IIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYG 863
I F+ P ++F DP TG + N PG + +S Y
Sbjct: 357 IAKKNSVGFILPNLEVKF--------IDPDTGRSL--PKNTPGEL---CVRSQCVMQGY- 402
Query: 864 YADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
Y +K+E+ + I E D + +GD+ +D+ G ++ DR + ++KG V+ E+E
Sbjct: 403 YNNKEETDRTIDE------DGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELE 456
Query: 924 ATI 926
A +
Sbjct: 457 AIL 459
>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
Length = 560
Score = 48.1 bits (115), Expect = 2e-05
Identities = 123/502 (24%), Positives = 195/502 (38%), Gaps = 115/502 (22%)
Query: 497 NDAAATTVKNLEAQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGV 555
N T + LE E S A LQ+ G KKGD +ALM N +Y G + G+
Sbjct: 44 NMGEVMTFRKLE----ERSRAFAAYLQNGLGLKKGDRVALMMPNLLQYPIALFGILRAGM 99
Query: 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDET------ 609
I +N + L H ++ +KAI++ + + +E + P VK +L
Sbjct: 100 IVVNVNPLYTPRELEHQLNDSGAKAIVIVSNFAHTLEKVVFKTP-VKHVILTRMGDQLST 158
Query: 610 ------------------KPDLPNL----SDLMKTTPASEVKPSEPLQTSDSLLYI-YTS 646
K LP+ S L K VKP + L ++ YT
Sbjct: 159 AKGTLVNFVVKYIKRLVPKYHLPDAISFRSALHKGRRMQYVKPE---LVPEDLAFLQYTG 215
Query: 647 GTTGLPKAAIMPNFKVLLGGQVGKH----LLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702
GTTG+ K A++ + +L + K LL G V+ LP+YH I AL
Sbjct: 216 GTTGVAKGAMLTHRNMLANLEQAKAAYGPLLHPGKELVV-TALPLYH--------IFALT 266
Query: 703 L---------GSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSH 752
+ G ++ I + ++ KY A + + LL ++E E D+S
Sbjct: 267 VNCLLFIELGGQNLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSS 326
Query: 753 QVVKM-IGVGMR-----GDIWAKFVKRFHVQTIIEFYGATEGN----ANLVNMDNTEGAV 802
+K+ +G GM + W K Q ++E YG TE + N ++D G++
Sbjct: 327 --LKLSVGGGMAVQQAVAERWVKLTG----QYLLEGYGLTECSPLVSVNPYDLDYYSGSI 380
Query: 803 GIIPTLLPTFLHPVAIIQFDLVENQ----PIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
G+ PV + LV++ P +P GE+ P
Sbjct: 381 GL----------PVPSTEIKLVDDDGNEVPPGEP-----------------GELWVKGP- 412
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
+ GY + E+ ++++ D + +GD+ VMDE G+L DR D G NV
Sbjct: 413 QVMLGYWQRPEATDEVIK------DGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVY 466
Query: 919 TMEVEATISKYLPYTEFTVYGV 940
E+E + + E GV
Sbjct: 467 PNEIEDVVMLHPKVLEVAAVGV 488
Score = 42.3 bits (100), Expect = 0.001
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCEN 183
+LV F+++V R + P + E T ++++E S A LQ+ G KKGD +ALM N
Sbjct: 24 SLVDMFEQAVARYADQPAFINMGEVMTFRKLEERSRAFAAYLQNGLGLKKGDRVALMMPN 83
Query: 184 RPEYVGVWLGAAKLGVI 200
+Y G + G+I
Sbjct: 84 LLQYPIALFGILRAGMI 100
>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional.
Length = 562
Score = 48.3 bits (115), Expect = 2e-05
Identities = 113/552 (20%), Positives = 207/552 (37%), Gaps = 100/552 (18%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTN--LK 565
A+++ +S A LQ GD +A+ N +Y GA + G+I ++NTN
Sbjct: 53 AELERHSAAFAAYLQQHTDLVPGDRIAVQMPNVLQYPIAVFGALRAGLI--VVNTNPLYT 110
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETK--------------- 610
+ + H ++A++ ++ ++ E +PD + L E K
Sbjct: 111 AREMRHQFKDSGARALVYLNMFGKLVQ---EVLPDTGIEYLIEAKMGDLLPAAKGWLVNT 167
Query: 611 ---------PD--LPN---LSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
P LP ++ +KP P+ D + YT GTTGL K A+
Sbjct: 168 VVDKVKKMVPAYHLPQAVPFKQALRQGRGLSLKPV-PVGLDDIAVLQYTGGTTGLAKGAM 226
Query: 657 ---------MPNFKVLLG--GQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS 705
M + L G G+ L+ G +V+ LP+YH + ++ G+
Sbjct: 227 LTHGNLVANMLQVRACLSQLGPDGQPLMKEGQ-EVMIAPLPLYHIYAFTANCMCMMVSGN 285
Query: 706 -SIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKE-SEADYSHQVVKMIG---- 759
++ I + ++ K++ +A + + + L+ + D+S + G
Sbjct: 286 HNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTAL 345
Query: 760 VGMRGDIWAKFVKRFHVQTIIEFYGATE----GNANLVNMDNTEGAVGIIPTLLPTFLHP 815
V + W + TI+E YG TE + N G VGI P
Sbjct: 346 VKATAERWEQLTG----CTIVEGYGLTETSPVASTNPYGELARLGTVGI----------P 391
Query: 816 VAIIQFDLVENQPIRDP---KTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQK 872
V ++++ P + LCI+ P ++ GY + E+
Sbjct: 392 VPGTALKVIDDDGNELPLGERGELCIK----GPQVM-------------KGYWQQPEATA 434
Query: 873 KILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPY 932
+ L+ + +F +GD+ V+D G++ DR D G NV E+E + +
Sbjct: 435 EALD-----AEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKV 489
Query: 933 TEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMT 992
GV + G A + +V + ++ L N Y P + + ++ MT
Sbjct: 490 ANCAAIGVP-DERSGEAVKLFVVARDPGLSVEELKAYCKENFTGYKVPKHIVLRDSLPMT 548
Query: 993 GTFKIKKIQLQN 1004
KI + +L++
Sbjct: 549 PVGKILRRELRD 560
>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE). PrpE catalyzes the
first step of the 2-methylcitric acid cycle for
propionate catabolism. It activates propionate to
propionyl-CoA in a two-step reaction, which proceeds
through a propionyl-AMP intermediate and requires ATP
and Mg2+. In Salmonella enterica, the PrpE protein is
required for growth of S. enterica on propionate and can
substitute for the acetyl-CoA synthetase (Acs) enzyme
during growth on acetate. PrpE can also activate
acetate, 3HP, and butyrate to their corresponding
CoA-thioesters, although with less efficiency.
Length = 607
Score = 47.7 bits (114), Expect = 3e-05
Identities = 49/194 (25%), Positives = 81/194 (41%), Gaps = 39/194 (20%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
+++A +L+ G KGD + + PE V L A++G I +++ + L I
Sbjct: 84 SRLAGVLRKLGVVKGDRVIIYMPMIPEAVIAMLACARIGAIHSVVFGGFASKELASRIDD 143
Query: 576 VKSKAIIVSALY---------YPEI--EAIRESI-PDVKLFLLDETKPDLP--------- 614
K K +IV+A + Y + +A+ S K+ +L+ + +P
Sbjct: 144 AKPK-LIVTASFGIEPGRVVPYKPLLDKALELSQHKPHKVLILN--RGQVPAPLKPGRDL 200
Query: 615 NLSDLMKTTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAAIMPNFKVLLGGQVGKHLL 673
+ ++LM + P E S LYI YTSGTTG PK + G + +
Sbjct: 201 DWAELMAKARPVDCVPVE----STDPLYILYTSGTTGKPKGVVRDT---------GGYAV 247
Query: 674 SLG-SGDVIYNCLP 686
+L S IY P
Sbjct: 248 ALKWSMRNIYGIKP 261
Score = 43.8 bits (104), Expect = 5e-04
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 879 FKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVY 938
Y+ +GD DE GYL+ RT D G +ST E+E ++ K+ E V
Sbjct: 456 LNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVV 515
Query: 939 GVKVGDLDGRA--GMIAIVDTSNQVDLKL---LVQGLDANLPAYARPLFVRIMKAIEMTG 993
GV+ +L G+ G++ + D +L +V + + A V +K + T
Sbjct: 516 GVR-DELKGQVPLGLVVLKDDCKIDADQLENEIVALVREQIGPVAAFRNVVFVKRLPKTR 574
Query: 994 TFKI-----KKIQLQNEGFDPSQISDD 1015
+ KI +KI + DPS I D
Sbjct: 575 SGKILRRTLRKIADGEDYKDPSTIEDP 601
>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA).
DltA belongs to the class I AMP-forming adenylation
domain superfamily, which also includes acetyl-CoA
synthetase, luciferase, and the adenylation domains of
non-ribosomal synthetases. It catalyzes the two-step
activation reaction of D-alanine: the formation of a
substrate-AMP molecule as an intermediate, and then the
transfer of the amino acid adenylate to teichoic acid in
the biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram-positive bacteria.
Length = 447
Score = 47.2 bits (113), Expect = 4e-05
Identities = 53/237 (22%), Positives = 86/237 (36%), Gaps = 33/237 (13%)
Query: 768 AKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQ 827
+RF II YG TE AV + P + + + +
Sbjct: 232 KALRRRFPNARIINLYGPTE----------ATVAVTAYE------VTPEPLSRNEPL--- 272
Query: 828 PIRDPKTGLCIRCKYN------QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKP 881
PI PK GL R P GE+ + P GY + E K
Sbjct: 273 PIGYPKPGL--RALILDEDGRPVPPGEEGELVIAGPQV-SPGYLNNPEKTAKAFF--QDE 327
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
G +++ +GD++ +++ G L + R + G + E+EA + LP E V +
Sbjct: 328 GQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRA-LPGVEEAVV-LP 385
Query: 942 VGDLDGRAGMIAIVDT-SNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997
V + ++A V +D K L + L LP Y P + ++ + KI
Sbjct: 386 VPKGEKVVRLVAFVVGKEGALDTKALKKELKKRLPPYMIPRRFVYLDSLPLNANGKI 442
Score = 33.7 bits (78), Expect = 0.61
Identities = 15/65 (23%), Positives = 28/65 (43%)
Query: 134 VKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193
+ P+ P +T T ++ E ++++A L G + GD +A+ P+ L
Sbjct: 1 AAKHPDRPALVVGGDTLTYAELKERADRLAARLLALGGRAGDPVAVYGHKSPDAYAAILA 60
Query: 194 AAKLG 198
K G
Sbjct: 61 CLKAG 65
Score = 31.0 bits (71), Expect = 3.6
Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 638 DSLLYI-YTSGTTGLPK 653
D L YI +TSG+TG PK
Sbjct: 97 DDLAYILFTSGSTGKPK 113
>gnl|CDD|235134 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional.
Length = 655
Score = 47.1 bits (113), Expect = 4e-05
Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 17/155 (10%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+A L+ G GD +A N PE V L A LG I + + + Q ++ +
Sbjct: 126 ALAAALRALGVGPGDRVAAYLPNIPETVVAMLATASLGAIWSSCSPDFGVQGVLDRFGQI 185
Query: 577 KSKAIIVSALYY---------PEIEAIRESIPDVKLFLL------DETKPDLPNLSDLMK 621
+ K +I Y ++ +R ++P ++ ++ LP
Sbjct: 186 EPKVLIAVDGYRYGGKAFDRRAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWED 245
Query: 622 TTPASEVKPSEPLQTS-DSLLYI-YTSGTTGLPKA 654
+E E D L+I Y+SGTTGLPK
Sbjct: 246 FLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKC 280
Score = 31.7 bits (73), Expect = 2.8
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 136 RRPNAPCYYFQDETWTIKQI--DEYSNKIARI---LQDDGFKKGDVLALMCENRPEYVGV 190
RR + P F+ E +++ E ++A + L+ G GD +A N PE V
Sbjct: 96 RRDDRPAIIFRGEDGPRRELSWAELRRQVAALAAALRALGVGPGDRVAAYLPNIPETVVA 155
Query: 191 WLGAAKLGVI 200
L A LG I
Sbjct: 156 MLATASLGAI 165
>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA
ligase and acetyl-activating enzyme). Acetyl-CoA
synthetase (ACS) catalyzes the formation of acetyl-CoA
from acetate, CoA, and ATP. Synthesis of acetyl-CoA is
carried out in a two-step reaction. In the first step,
the enzyme catalyzes the synthesis of acetyl-AMP
intermediate from acetate and ATP. In the second step,
acetyl-AMP reacts with CoA to produce acetyl-CoA. This
enzyme is widely present in all living organisms. The
activity of this enzyme is crucial for maintaining the
required levels of acetyl-CoA, a key intermediate in
many important biosynthetic and catabolic processes.
Acetyl-CoA is used in the biosynthesis of glucose, fatty
acids, and cholesterol. It can also be used in the
production of energy in the citric acid cycle.
Eukaryotes typically have two isoforms of acetyl-CoA
synthetase, a cytosolic form involved in biosynthetic
processes and a mitochondrial form primarily involved in
energy generation.
Length = 602
Score = 47.2 bits (113), Expect = 5e-05
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 19/155 (12%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
+ A +L+ G KKGD +A+ PE L A++G I +++ + L I+
Sbjct: 89 CRFANVLKSLGVKKGDRVAIYMPMIPELPIAMLACARIGAIHSVVFAGFSAEALADRIND 148
Query: 576 VKSKAIIVSALYY---------PEIEAIRESIPDVKLFL-LDETKPDLPN-------LSD 618
KSK +I + Y ++ E P V+ + + T ++P D
Sbjct: 149 AKSKLLITADGGYRGGKVIPLKEIVDEALEKCPSVEKVIVVKRTGGEVPMVEGRDVWWHD 208
Query: 619 LMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
LM +P EP+ D L +YTSG+TG PK
Sbjct: 209 LMAKASP-YCEP-EPMDAEDPLFILYTSGSTGKPK 241
Score = 37.5 bits (88), Expect = 0.047
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 135 KRRPNAPCYYFQDE------TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188
R N ++ E T T +++ + A +L+ G KKGD +A+ PE
Sbjct: 58 AGRGNKVAIIWEGEPGDESRTITYRELYREVCRFANVLKSLGVKKGDRVAIYMPMIPELP 117
Query: 189 GVWLGAAKLGVI 200
L A++G I
Sbjct: 118 IAMLACARIGAI 129
Score = 33.3 bits (77), Expect = 0.81
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 21/111 (18%)
Query: 819 IQFDLVENQ--PIRDPKTG-LCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKIL 875
++ +V+ + + G L I+ + PGM+ D R+ Y
Sbjct: 413 VEPAIVDEEGNEVEGGVEGYLVIKRPW--PGMLRTIYG--DHERYVKTY----------- 457
Query: 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI 926
F Y+ +GD DE GY + R D G + T EVE+ +
Sbjct: 458 ---FSKFPGYYFTGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESAL 505
>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated.
Length = 471
Score = 46.5 bits (111), Expect = 6e-05
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 14/126 (11%)
Query: 605 LLDETKPDLPNLSDL-MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL 663
L D L + ++ S + EP + +L+ +YTSGTTG PK ++
Sbjct: 96 WLGPAPDDPAGLPHVPVRLHARSWHRYPEPDPDAPALI-VYTSGTTGPPKGVVLSR---- 150
Query: 664 LGGQVGKHLLSLG------SGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASN 717
+ L +L + DV+ + LP++H G ++G + L +G+ + +
Sbjct: 151 --RAIAADLDALAEAWQWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNRFVHTGRPTPEA 208
Query: 718 YFRDCA 723
Y + +
Sbjct: 209 YAQALS 214
Score = 31.1 bits (71), Expect = 3.5
Identities = 58/237 (24%), Positives = 96/237 (40%), Gaps = 39/237 (16%)
Query: 777 QTIIEFYGATEGNANL---VNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQ--PI-R 830
+E YG TE L + + G VG+ P+A ++ LV+ P+
Sbjct: 267 HRPVERYGMTETLITLSTRADGERRPGWVGL----------PLAGVETRLVDEDGGPVPH 316
Query: 831 DPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGD 890
D +T +GE++ P+ F GY ++ ++ F D +F +GD
Sbjct: 317 DGET--------------VGELQVRGPTL-FDGYLNRPDAT----AAAFTA-DGWFRTGD 356
Query: 891 MMVMDELGYLYFKDRTG-DTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRA 949
+ V+D G R D + G + E+E + + E V GV DL R
Sbjct: 357 VAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQR- 415
Query: 950 GMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006
++A V ++ V L+ + L + RP VR + A+ K+ K QL +EG
Sbjct: 416 -IVAYVVGADDVAADELIDFVAQQLSVHKRPREVRFVDALPRNAMGKVLKKQLLSEG 471
>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional.
Length = 579
Score = 46.6 bits (110), Expect = 7e-05
Identities = 94/439 (21%), Positives = 161/439 (36%), Gaps = 58/439 (13%)
Query: 529 KGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYY 588
K DV++++ N P + G + INT L + + K K + V +
Sbjct: 63 KNDVVSVLAPNTPAMYEMHFAVPMAGAVLNPINTRLDATSIAAILRHAKPKILFVDRSFE 122
Query: 589 PEIEAIRESIPDVKLFLLDETKPDLP----NLSDLMKTTPASE------VKPSEPLQTSD 638
P + + +++ +LP + D K + E ++ EP +
Sbjct: 123 PLAREVLHLLSS------EDSNLNLPVIFIHEIDFPKRPSSEELDYECLIQRGEPTPSLV 176
Query: 639 SLLYI-----------YTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPM 687
+ ++ YTSGTT PK ++ + L +G+ V LPM
Sbjct: 177 ARMFRIQDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPVYLWTLPM 236
Query: 688 YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESE 747
+H G A G+S+ +R +A +++ + + + LL K +
Sbjct: 237 FHCNGWTFTWGTAARGGTSVCMR-HVTAPEIYKNIEMHNVTHMCCVPTVFNILL--KGNS 293
Query: 748 ADYSHQ---VVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGI 804
D S + V + G K V+R Q ++ YG TE ++ + +
Sbjct: 294 LDLSPRSGPVHVLTGGSPPPAALVKKVQRLGFQ-VMHAYGLTEATGPVLFCEWQDEW--- 349
Query: 805 IPTLLPTFLHPVAIIQFDLVENQPIRDPK-TGLCIRCKYNQP-----GMIIGEIKQSDPS 858
LP Q +L Q + + ++ K Q G +GEI S
Sbjct: 350 --NRLPENQ------QMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSS 401
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
GY K FK G + +GD+ V+ G++ KDR+ D GEN+S
Sbjct: 402 I-MKGYL----KNPKATSEAFKHG--WLNTGDVGVIHPDGHVEIKDRSKDIIISGGENIS 454
Query: 919 TMEVEATISKYLPYTEFTV 937
++EVE + KY E V
Sbjct: 455 SVEVENVLYKYPKVLETAV 473
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated.
Length = 562
Score = 46.3 bits (110), Expect = 8e-05
Identities = 112/543 (20%), Positives = 211/543 (38%), Gaps = 87/543 (16%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTN--LK 565
++ + S A LQ K GD +A+ N +Y GA + G+I ++NTN
Sbjct: 53 GELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYPVAVFGAMRAGLI--VVNTNPLYT 110
Query: 566 KQPLVHSISTVKSKAIIVSALYYPEIE------AIRESI--------PDVKLFLLDETK- 610
+ + H + +KA++ A E ++ I P +K L++
Sbjct: 111 AREMEHQFNDSGAKALVCLANMAHLAEKVLPKTGVKHVIVTEVADMLPPLKRLLINAVVK 170
Query: 611 -----------PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI--- 656
P +D + V + P Q D + YT GTTG+ K A+
Sbjct: 171 HVKKMVPAYHLPQAVKFNDALAKGAGQPVTEANP-QADDVAVLQYTGGTTGVAKGAMLTH 229
Query: 657 ------MPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGS-SIAI 709
M + L+G + + +++ LP+YH + +++G+ +I I
Sbjct: 230 RNLVANMLQCRALMGSNLNE------GCEILIAPLPLYHIYAFTFHCMAMMLIGNHNILI 283
Query: 710 RTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEA-DYSHQVVKMIGVGMRGDI-W 767
++ K+K + + + + L ++ D+S + + G GM +
Sbjct: 284 SNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSG-GMALQLAT 342
Query: 768 AKFVKRFHVQTIIEFYGATEGN--ANLVNMDNTE-GAVGI-IPTLLPTFLHPVAIIQFDL 823
A+ K I E YG TE + ++ + G +GI +P+ L +I D
Sbjct: 343 AERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL------CKVID-DD 395
Query: 824 VENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGD 883
P+ + LC++ P ++ GY + E+ +IL++ D
Sbjct: 396 GNELPLGEVGE-LCVK----GPQVM-------------KGYWQRPEATDEILDS-----D 432
Query: 884 KYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVG 943
+ +GD+ ++ E GY+ DR D G NV E+E ++ + GV
Sbjct: 433 GWLKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVP-D 491
Query: 944 DLDGRAGMIAIVDTSNQ-VDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ G A + +V + + + +++ + ANL Y P V + T KI + +L
Sbjct: 492 EKSGEAIKVFVVVKPGETLTKEQVMEHMRANLTGYKVPKAVEFRDELPTTNVGKILRREL 551
Query: 1003 QNE 1005
++E
Sbjct: 552 RDE 554
Score = 31.7 bits (72), Expect = 2.9
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 130 FKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYV 188
K+S +R + P + +T T ++ + S A LQ K GD +A+ N +Y
Sbjct: 30 LKQSCQRFADKPAFSNLGKTLTYGELYKLSGAFAAWLQQHTDLKPGDRIAVQLPNVLQYP 89
Query: 189 GVWLGAAKLGVISKLSNVVWLAQLLGKKMVH 219
GA + G+I +N ++ A ++M H
Sbjct: 90 VAVFGAMRAGLIVVNTNPLYTA----REMEH 116
>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase. This family
contains one of three readily separable clades of
proteins in the group of acetate and propionate--CoA
ligases. Characterized members of this family act on
propionate. From propionyl-CoA, there is a cyclic
degradation pathway: it is ligated by PrpC to the TCA
cycle intermediate oxaloacetate, acted upon further by
PrpD and an aconitase, then cleaved by PrpB to pyruvate
and the TCA cycle intermediate succinate.
Length = 628
Score = 46.1 bits (109), Expect = 9e-05
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 12/139 (8%)
Query: 886 FLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDL 945
+ S D + DE GY + RT D G + T E+E ++S + E V GV +L
Sbjct: 474 YSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVH-DEL 532
Query: 946 DGRAGMI-AIVDTSNQVD--------LKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFK 996
G+ ++ AI+ S+ ++ + L A ARP V + A+ T + K
Sbjct: 533 KGQVAVVFAILKESDSAGDAHDPHAVETGMMDCVVRQLGAVARPARVYFVAALPKTRSGK 592
Query: 997 I--KKIQLQNEGFDPSQIS 1013
+ + IQ EG DP ++
Sbjct: 593 LLRRSIQALAEGRDPGDLT 611
Score = 30.6 bits (69), Expect = 5.9
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 146 QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
Q+ T T +Q+ N A L+ G +GD + + E V L A++G I
Sbjct: 80 QERTLTYRQLHREVNVFASALRALGVGRGDRVLIYMPMIAEAVFAMLACARIGAI 134
>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 46.0 bits (110), Expect = 1e-04
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV----IS---ALINTNLKKQPL 569
IA+ L D G L ++ N E+ + L A GV +S +L++ + K L
Sbjct: 81 AIAQALLDRGLSAERPLMILSGNSIEHALLALAAMYAGVPYAPVSPAYSLVSQDFGK--L 138
Query: 570 VHSISTVKSKAIIVS--ALYYPEIEAIRESIPDVKLFLLDETKPDLPNLS--DLMKTTPA 625
H + + + A + + A+ DV++ + P L+ T P
Sbjct: 139 RHVLELLTPGLVFADDGAAFARALAAVVP--ADVEVVAVRGAVPGRAATPFAALLATPPT 196
Query: 626 SEVKPSEPLQTSDSLL-YIYTSGTTGLPKAAI 656
+ V + D++ +++TSG+TGLPKA I
Sbjct: 197 AAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVI 228
>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase. This model
describes acetate-CoA ligase (EC 6.2.1.1), also called
acetyl-CoA synthetase and acetyl-activating enzyme. It
catalyzes the reaction ATP + acetate + CoA = AMP +
diphosphate + acetyl-CoA and belongs to the family of
AMP-binding enzymes described by pfam00501.
Length = 625
Score = 46.1 bits (110), Expect = 1e-04
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 20/156 (12%)
Query: 516 NKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSIST 575
+ A +L+ G KKGD +A+ PE L A++G I +++ + L I+
Sbjct: 99 CRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAIHSVVFGGFSAEALADRIND 158
Query: 576 VKSKAII----------VSALYYPEIEAIRESIPDVKLFL-LDETKPDLP-------NLS 617
+K +I V L EA+ + V+ L + T +P
Sbjct: 159 AGAKLVITADEGLRGGKVIPLKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWH 218
Query: 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
DLM A +P EP+ + D L +YTSG+TG PK
Sbjct: 219 DLMAKASA-YCEP-EPMDSEDPLFILYTSGSTGKPK 252
Score = 40.7 bits (96), Expect = 0.004
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 22/128 (17%)
Query: 803 GIIPTLLPTFLHPVAIIQFDLVEN--QPIRDPKTG--LCIRCKYNQPGMIIGEIKQSDPS 858
G PT + P I+ +V+ P+ P G L I+ + PGM+ D
Sbjct: 408 GATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPW--PGMLRTIYG--DHE 463
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
R Y F P Y+ +GD D+ GY++ R D G +
Sbjct: 464 RFVDTY--------------FSPFPGYYFTGDGARRDKDGYIWITGRVDDVINVSGHRLG 509
Query: 919 TMEVEATI 926
T E+E+ +
Sbjct: 510 TAEIESAL 517
Score = 31.8 bits (73), Expect = 2.6
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 146 QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
+ T +++ + A +L+ G KKGD +A+ PE L A++G I
Sbjct: 85 EVRKITYRELHREVCRFANVLKSLGVKKGDRVAIYMPMIPEAAIAMLACARIGAI 139
>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase;
Provisional.
Length = 458
Score = 45.2 bits (108), Expect = 1e-04
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 33/152 (21%)
Query: 507 LEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKK 566
L A+ID+ A G +G +AL +N PE + +L + G +N L +
Sbjct: 34 LCARIDQL----AAGFAQQGVVEGSGVALRGKNSPETLLAYLALLQCGARVLPLNPQLPQ 89
Query: 567 QPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPAS 626
P +E + S+ + L+ E + L+ L
Sbjct: 90 ----------------------PLLEELLPSL-TLDFALVLEGENTFSALTSLH----LQ 122
Query: 627 EVKPSEPLQTSDSLLY--IYTSGTTGLPKAAI 656
V+ + + L TSG+TGLPKAA+
Sbjct: 123 LVEGAHAVAWQPQRLATMTLTSGSTGLPKAAV 154
Score = 37.9 bits (89), Expect = 0.028
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 136 RRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195
RP A DE T +Q+ +++A G +G +AL +N PE + +L
Sbjct: 15 VRPQAIALRLNDEVLTWQQLCARIDQLAAGFAQQGVVEGSGVALRGKNSPETLLAYLALL 74
Query: 196 KLGV 199
+ G
Sbjct: 75 QCGA 78
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 448
Score = 45.0 bits (107), Expect = 2e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 22/107 (20%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWK-------GENVSTMEVEATISKYLPYTEF 935
D ++ +GD+ +DE GYLY R K G NVS VE+ + + +
Sbjct: 325 DDWWATGDLGHLDEEGYLYINGRK------KNLIITSFGRNVSPEWVESELQQAPAIAQA 378
Query: 936 TVYGVKVGDLDGRAGMIAIVDTSNQV---DLKLLVQGLDANLPAYAR 979
V+G D + ++A++ + + L+ VQ ++A LP YAR
Sbjct: 379 VVFG------DAQPFLVALIVPAPNISDDQLEAAVQQINAQLPDYAR 419
>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated.
Length = 545
Score = 45.3 bits (108), Expect = 2e-04
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 33/271 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ ++A L G +GD +A++ N P V G G + +NT L
Sbjct: 47 AETYARCRRLASALARRGIGRGDTVAVLLPNIPAMVEAHFGVPMAGAVLNTLNTRLDAAS 106
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN---LSDLMKTTPA 625
+ + ++K +IV + +P K ++D P+ P + L
Sbjct: 107 IAFMLRHGEAKVLIVDTEFAEVAREALALLPGPKPLVIDVDDPEYPGGRFIGALDYEAFL 166
Query: 626 SEVKPSEPLQTS----DSLLYIYTSGTTGLPK--------AAIMPNFKVLLGGQVGKHLL 673
+ P D++ YTSGTTG PK A + +L G + KH +
Sbjct: 167 ASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGVVYHHRGAYLNALSNILAWG-MPKHPV 225
Query: 674 SLGSGDVIYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK----CN 728
L + LPM+H G T+ A G+++ +R K F ++ C
Sbjct: 226 YLWT-------LPMFHCNGWCFPWTVAARA-GTNVCLR-KVDPKLIFDLIREHGVTHYCG 276
Query: 729 AGIYIGEMCRYLLASKESEADYSHQVVKMIG 759
A I + + A E A H V M+
Sbjct: 277 APIVLSALIN---APAEWRAGIDHPVHAMVA 304
Score = 43.0 bits (102), Expect = 9e-04
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 885 YFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
+F +GD+ V+ GY+ KDR+ D GEN+S++EVE
Sbjct: 417 WFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVE 455
>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including salinosporamide A
polyketide synthase. The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
to the enzyme-bound cofactor phosphopantetheine of a
peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
This family includes the myxovirescin (TA) antibiotic
biosynthetic gene in Myxococcus xanthus; TA production
plays a role in predation. It also includes the
salinosporamide A polyketide synthase which is involved
in the biosynthesis of salinosporamide A, a marine
microbial metabolite whose chlorine atom is crucial for
potent proteasome inhibition and anticancer activity.
Length = 438
Score = 44.1 bits (105), Expect = 3e-04
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A D T + ++DE SN++A L+ G GD + ++ E + V L K
Sbjct: 1 PDAIALRDDDRTLSYAELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKA 60
Query: 198 G 198
G
Sbjct: 61 G 61
Score = 39.9 bits (94), Expect = 0.006
Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 55/147 (37%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++DE SN++A L+ G GD + ++ E + V L K G
Sbjct: 16 AELDERSNQLAARLRALGVGPGDRVGVLLERSADLVAALLAILKAG-------------- 61
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL-FLLDETKPDLPNLSDLMKTTPASE 627
A Y P + S P +L ++L++ +P L
Sbjct: 62 ----------------AAYVP----LDPSYPAERLQYMLEDAEPAL-------------- 87
Query: 628 VKPSEPLQTSDSLLY-IYTSGTTGLPK 653
L D L Y IYTSG+TG PK
Sbjct: 88 -----LLTDPDDLAYVIYTSGSTGKPK 109
>gnl|CDD|197660 smart00333, TUDOR, Tudor domain. Domain of unknown function
present in several RNA-binding proteins. 10 copies in
the Drosophila Tudor protein. Initial proposal that the
survival motor neuron gene product contain a Tudor
domain are corroborated by more recent database search
techniques such as PSI-BLAST (unpublished).
Length = 57
Score = 38.8 bits (91), Expect = 4e-04
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 256 GLLCLARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQ 308
G AR +D Y R ++ +L + F+DY +++ +P DL +
Sbjct: 6 GDKVAARWEDGEWY-RARIVKVDGEQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57
>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional.
Length = 700
Score = 43.8 bits (104), Expect = 5e-04
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 11/159 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ E R L + G KG +A+ E R E++ G +++A + NL +
Sbjct: 125 AELWERIVNFGRGLAELGLTKGSNVAIYEETRWEWLASIYGIWSQSMVAATVYANLGEDA 184
Query: 569 LVHSISTVKSKAIIVSALYYPE-IEAIRES-IPDVKLFLLDETKPD-------LPNLSDL 619
L +++ + KAI+ + P + ++ +P+ + LD L +D+
Sbjct: 185 LAYALRETECKAIVCNGKNVPNLLRLMKSGGMPNTTIIYLDSLPASVDTEGCRLVAWTDV 244
Query: 620 MKT--TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
+ + S + P D L +YTSGTTG PK +
Sbjct: 245 VAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVM 283
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 43.8 bits (103), Expect = 6e-04
Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 25/216 (11%)
Query: 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDV-TYSRFKQEASNARSTNDAAATTV 504
+D + + E ALLD E + E + R A A +A A
Sbjct: 1968 EDAQAALGELALLDAGERQRILADWDRTPEAYPRGPGVHQRI---AEQAARAPEAIAVVF 2024
Query: 505 KNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALIN 561
+ A++D +N++A L+ G +A+ E E V L K G ++
Sbjct: 2025 GDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLAVLKAGGAYVPLD 2084
Query: 562 TNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETKPDLPNLSDLM 620
N + L + + + ++ + E +P + L + +D
Sbjct: 2085 PNYPAERLAYMLEDSGAALLLTQ-------RHLLERLPLPAGVARLPLDRDA--EWADYP 2135
Query: 621 KTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPKAA 655
T PA ++ ++L Y IYTSG+TGLPK
Sbjct: 2136 DTAPAVQLAG-------ENLAYVIYTSGSTGLPKGV 2164
Score = 36.1 bits (83), Expect = 0.15
Identities = 44/214 (20%), Positives = 84/214 (39%), Gaps = 20/214 (9%)
Query: 446 QDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVK 505
++ + +DE +LD EE + V + + + R +E T +A A
Sbjct: 476 ENPQARVDELPMLDAEERGQLVEGWNATAAEYPLQRGVHRLFEE--QVERTPEAPALAFG 533
Query: 506 NLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562
A+++ +N++A L + G ++ + E E V L K G ++
Sbjct: 534 EETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVVALLAILKAGGAYVPLDP 593
Query: 563 NLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT 622
+ L + + + ++ + ++ V++ LD L S+
Sbjct: 594 EYPAERLAYMLEDSGVQLLLSQSHLGRKLPLAAG----VQVLDLDRPAAWLEGYSE---E 646
Query: 623 TPASEVKPSEPLQTSDSLLY-IYTSGTTGLPKAA 655
P +E+ P ++L Y IYTSG+TG PK A
Sbjct: 647 NPGTELNP-------ENLAYVIYTSGSTGKPKGA 673
Score = 34.9 bits (80), Expect = 0.35
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 130 FKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 189
F++ V+R P AP F +ET +++ +N++A L + G ++ + E E V
Sbjct: 517 FEEQVERTPEAPALAFGEETLDYAELNRRANRLAHALIERGVGPDVLVGVAMERSIEMVV 576
Query: 190 VWLGAAKLG 198
L K G
Sbjct: 577 ALLAILKAG 585
Score = 30.3 bits (68), Expect = 9.2
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 134 VKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 193
R P A F D+ + ++D +N++A L+ G +A+ E E V L
Sbjct: 2013 AARAPEAIAVVFGDQHLSYAELDSRANRLAHRLRARGVGPEVRVAIAAERSFELVVALLA 2072
Query: 194 AAKLG 198
K G
Sbjct: 2073 VLKAG 2077
Score = 30.3 bits (68), Expect = 9.2
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 626 SEVKPSEPLQTSDSLLY-IYTSGTTGLPKAA 655
P+ L D+L Y IYTSG+TG PK
Sbjct: 4683 PAHDPAVRLH-PDNLAYVIYTSGSTGRPKGV 4712
>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide
synthetases (NRPS). The adenylation (A) domain of NRPS
recognizes a specific amino acid or hydroxy acid and
activates it as an (amino) acyl adenylate by hydrolysis
of ATP. The activated acyl moiety then forms a thioester
bond to the enzyme-bound cofactor phosphopantetheine of
a peptidyl carrier protein domain. NRPSs are large
multifunctional enzymes which synthesize many
therapeutically useful peptides in bacteria and fungi
via a template-directed, nucleic acid independent
nonribosomal mechanism. These natural products include
antibiotics, immunosuppressants, plant and animal
toxins, and enzyme inhibitors. NRPS has a distinct
modular structure in which each module is responsible
for the recognition, activation, and in some cases,
modification of a single amino acid residue of the final
peptide product. The modules can be subdivided into
domains that catalyze specific biochemical reactions.
Length = 445
Score = 42.8 bits (102), Expect = 9e-04
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 138 PNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 197
P+A F D++ T ++++E +N++A L+ G GD++A+ E PE V L K
Sbjct: 1 PDAVAVVFGDQSLTYRELNERANRLAHYLRARGVGPGDLVAICLERSPEMVVAILAVLKA 60
Query: 198 G 198
G
Sbjct: 61 G 61
Score = 37.8 bits (89), Expect = 0.032
Identities = 39/153 (25%), Positives = 59/153 (38%), Gaps = 57/153 (37%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E +N++A L+ G GD++A+ E PE V A L V+
Sbjct: 16 RELNERANRLAHYLRARGVGPGDLVAICLERSPEMV-----VAILAVL------------ 58
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPN--LSDLMKTTPAS 626
KA A Y P LD P P L+ +++ + A
Sbjct: 59 ----------KA---GAAYVP----------------LD---PAYPAERLAYMLEDSGAK 86
Query: 627 EVKPSEPLQTSDSLLY-IYTSGTTGLPKAAIMP 658
+ L D L Y IYTSG+TG PK ++
Sbjct: 87 LL-----LTDPDDLAYVIYTSGSTGRPKGVMVE 114
>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated.
Length = 705
Score = 43.1 bits (101), Expect = 9e-04
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 23/150 (15%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
QI + + ++ +L++ G GD + L + P+ V + L GV++ L N L +
Sbjct: 35 QIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARGVMAFLANPELHRDDH 94
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKP-DLPNLSDLMKTTPASEV 628
+ + ++ S L D +P + ++LM + A+ V
Sbjct: 95 ALAARNTEPALVVTSDA------------------LRDRFQPSRVAEAAELM--SEAARV 134
Query: 629 KPS--EPLQTSDSLLYIYTSGTTGLPKAAI 656
P EP+ YTSGTTG PKAAI
Sbjct: 135 APGGYEPMGGDALAYATYTSGTTGPPKAAI 164
Score = 31.9 bits (72), Expect = 2.5
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 139 NAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLG 198
+ P +Y D T QI + + ++ +L++ G GD + L + P+ V + L G
Sbjct: 21 DRPAFYAADVV-THGQIHDGAARLGEVLRNRGLSSGDRVLLCLPDSPDLVQLLLACLARG 79
Query: 199 VISKLSN 205
V++ L+N
Sbjct: 80 VMAFLAN 86
>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 542
Score = 42.8 bits (101), Expect = 0.001
Identities = 37/182 (20%), Positives = 73/182 (40%), Gaps = 11/182 (6%)
Query: 480 DVTYSRFKQEASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALM 536
D T + + A D A A++D+ ++++A L+ G K GD + +
Sbjct: 27 DRTLTDILTDH--AARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQ 84
Query: 537 CENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEI--EAI 594
N E+ + +LGV L + + L S +++ +IV+ +
Sbjct: 85 LPNVAEFYITFFALLRLGVAPVLALPSHRASELGAFASQIEAALLIVARQHSGFDYRPFA 144
Query: 595 RE---SIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGL 651
RE P ++ ++ + + P++ + PA P+ P + + + GTTG
Sbjct: 145 RELVAKHPTLRHVIVA-GEAEHPSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGT 203
Query: 652 PK 653
PK
Sbjct: 204 PK 205
Score = 32.8 bits (75), Expect = 1.0
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D ++ SGD++ D GYL + R D GE ++ EVE + ++ + + V +
Sbjct: 413 DGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAAL--VAM 470
Query: 943 GD-LDGRAGMIAIVDTSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKI 1000
D L G IV + L + L L A+ P + + ++ +T KI K
Sbjct: 471 PDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDRIEFVDSLPLTAVGKIDKK 530
Query: 1001 QL 1002
L
Sbjct: 531 AL 532
Score = 32.0 bits (73), Expect = 2.0
Identities = 16/76 (21%), Positives = 32/76 (42%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
TL R P+ + + ++D+ ++++A L+ G K GD + + N
Sbjct: 29 TLTDILTDHAARYPDRIAVIDGERRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPNV 88
Query: 185 PEYVGVWLGAAKLGVI 200
E+ + +LGV
Sbjct: 89 AEFYITFFALLRLGVA 104
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 41.7 bits (98), Expect = 0.002
Identities = 38/187 (20%), Positives = 72/187 (38%), Gaps = 17/187 (9%)
Query: 518 IARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTV 576
+A L D+ G + M N E++ V A +G + +N L +VH I+
Sbjct: 51 LAHALHDELGITGDQRVGSMMYNCAEHLEVLFAVACMGAVFNPLNKQLMNDQIVHIINHA 110
Query: 577 KSKAIIVSALYYPEIEAIRESIPDVKLFLL------DETKPDLP------NLSDLMKTTP 624
+ + I+ ++ I + P V+ + D +P + L+
Sbjct: 111 EDEVIVADPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRS 170
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ--VGKHLLSLGSGDVIY 682
P T+ ++ Y++GTTG PK + + + L L++ G+
Sbjct: 171 TVYDWPELDETTAAAI--CYSTGTTGAPKGVVYSHRSLYLQSLSLRTTDSLAVTHGESFL 228
Query: 683 NCLPMYH 689
C+P+YH
Sbjct: 229 CCVPIYH 235
>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated.
Length = 4334
Score = 42.1 bits (99), Expect = 0.002
Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 18/178 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ +N++ L+ G +AL+ E + +G+ +G+ K G ++ L Q
Sbjct: 3749 AELNRAANRLGHALRAAGVGVDQPVALLAERGLDLLGMIVGSFKAGAGYLPLDPGLPAQR 3808
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE-TKPDLPNLSDLMKTTPASE 627
L I ++ ++ SA A RE LLDE + P L + + A E
Sbjct: 3809 LQRIIELSRTPVLVCSA-------ACREQARA----LLDELGCANRPRLL-VWEEVQAGE 3856
Query: 628 VKPSEP--LQTSDSLLY-IYTSGTTGLPKAAIMPNFKVLLGGQVGK-HLLSLGSGDVI 681
V P D+L Y IYTSG+TGLPK +M + +L Q+ K L+L DVI
Sbjct: 3857 VASHNPGIYSGPDNLAYVIYTSGSTGLPK-GVMVEQRGMLNNQLSKVPYLALSEADVI 3913
Score = 39.8 bits (93), Expect = 0.010
Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 29/199 (14%)
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVIS--ALINTNLKKQ 567
+D + IA LQ GD L+ + P+YV + G GVI+ A + ++
Sbjct: 45 DLDLRARTIAAALQARA-SFGDRAVLLFPSGPDYVAAFFGCLYAGVIAVPAYPPESARRH 103
Query: 568 ---PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTP 624
L+ I+ + + ++ A + + E L P+L + L
Sbjct: 104 HQERLLSIIADAEPRLLLTVADLRDSLLQMEE--------LAAANAPELLCVDTLDPALA 155
Query: 625 ASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL-------SLGS 677
+ +P+ LQ D YTSG+T LPK +V G V L L
Sbjct: 156 EAWQEPA--LQPDDIAFLQYTSGSTALPKGV-----QVSHGNLVANEQLIRHGFGIDLNP 208
Query: 678 GDVIYNCLPMYHSAGGLIG 696
DVI + LP+YH GLIG
Sbjct: 209 DDVIVSWLPLYHDM-GLIG 226
Score = 32.4 bits (74), Expect = 1.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDG 170
TL F R P AP F +T + ++D +N++AR L++ G
Sbjct: 2189 TLHGLFAAQAARTPQAPALTFAGQTLSYAELDARANRLARALRERG 2234
Score = 30.9 bits (70), Expect = 4.9
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 21/205 (10%)
Query: 454 EAALLDEEEMTEFVRQLQSKIEQLEVDVT-YSRFKQEASNARSTNDAAATTV--KNLE-A 509
E LL E + + L + + +D T + F A+ A T A A T + L A
Sbjct: 2161 ELPLLAAAEQQQLLDSLAGEAGEARLDQTLHGLF---AAQAARTPQAPALTFAGQTLSYA 2217
Query: 510 QIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPL 569
++D +N++AR L++ G + L E E V L K G ++ + L
Sbjct: 2218 ELDARANRLARALRERGVGPQVRVGLALERSLEMVVGLLAILKAGGAYVPLDPEYPLERL 2277
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVK 629
+ I ++ + EA+ E V + L++ D L+
Sbjct: 2278 HYMIEDSGIGLLLSDRALF---EALGELPAGVARWCLED---DAAALAAYSDAPLPFLSL 2331
Query: 630 PSEPLQTSDSLLY-IYTSGTTGLPK 653
P Y IYTSG+TG PK
Sbjct: 2332 P-------QHQAYLIYTSGSTGKPK 2349
>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional.
Length = 629
Score = 41.5 bits (98), Expect = 0.003
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 890 DMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRA 949
D + D GY + RT D G + T E+E +IS + E V GVK L G+
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVK-DALKGQV 537
Query: 950 GM-IAIVDTSNQVD-----LKL---LVQGLDANLPAYARPLFVRIMKAIEMTGTFKI--K 998
+ + S+ + L L ++ +D+ L A ARP V + A+ T + K+ +
Sbjct: 538 AVAFVVPKDSDSLADREARLALEKEIMALVDSQLGAVARPARVWFVSALPKTRSGKLLRR 597
Query: 999 KIQLQNEGFDPSQIS 1013
IQ EG DP ++
Sbjct: 598 AIQAIAEGRDPGDLT 612
Score = 32.2 bits (74), Expect = 1.9
Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 39/184 (21%)
Query: 496 TNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGD-VLALMCENRPEYVGVWLGAAKLG 554
T++ T + L ++ N++A +L+ G ++GD VL M E L A++G
Sbjct: 79 TDEERTYTFRQLHDEV----NRMAAMLRSLGVQRGDRVLIYM-PMIAEAAFAMLACARIG 133
Query: 555 VISALINTNLKKQPLVHSISTVKSKAIIVSA----------LYYPEI-EAIRES-IPDVK 602
I +++ L I K +IVSA Y P + EAI +
Sbjct: 134 AIHSVVFGGFASHSLAARIDDAKPV-LIVSADAGSRGGKVVPYKPLLDEAIALAQHKPRH 192
Query: 603 LFLLDETKPDLPNLSDLMKTTPASEVK-------------PSEPLQTSDSLLYIYTSGTT 649
+ L+D L M +V P E L++++ +YTSGTT
Sbjct: 193 VLLVDR------GL-APMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTT 245
Query: 650 GLPK 653
G PK
Sbjct: 246 GKPK 249
Score = 30.7 bits (70), Expect = 5.4
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 146 QDETWTIKQIDEYSNKIARILQDDGFKKGD-VLALMCENRPEYVGVWLGAAKLGVI 200
++ T+T +Q+ + N++A +L+ G ++GD VL M E L A++G I
Sbjct: 81 EERTYTFRQLHDEVNRMAAMLRSLGVQRGDRVLIYM-PMIAEAAFAMLACARIGAI 135
>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated.
Length = 545
Score = 41.1 bits (97), Expect = 0.003
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 41/163 (25%)
Query: 509 AQIDEYSNKIARILQDDGFKKGD---VLALM-CENRPEYVGVWLGAAKLGVISALINTNL 564
++ E + +IA L G GD VLA E P G+W+ A L T L
Sbjct: 33 GEVHERARRIAGGLAAAGVGPGDAVAVLAGAPVEIAPTAQGLWMRGASL--------TML 84
Query: 565 KKQP-----LVH-------SISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPD 612
QP L I + +KA++V + + E V
Sbjct: 85 H-QPTPRTDLAVWAEDTLRVIGMIGAKAVVVGEPFLAAAPVLEEKGIRVLT--------- 134
Query: 613 LPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAA 655
++DL+ P V+ E D L TSG+TG PKA
Sbjct: 135 ---VADLLAADPIDPVETGE----DDLALMQLTSGSTGSPKAV 170
>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated.
Length = 539
Score = 40.5 bits (95), Expect = 0.004
Identities = 47/211 (22%), Positives = 89/211 (42%), Gaps = 16/211 (7%)
Query: 494 RSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKL 553
R D T ++ E + + ++A+ L G + GD + + N ++ + G +
Sbjct: 32 RVEGDIHRYTYRDCERR----AKQLAQALAALGVEPGDRVGTLAWNGYRHLEAYYGVSGS 87
Query: 554 GVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDL 613
G + IN L + + + ++ + + ++ + P ++A+ P+VK ++ L
Sbjct: 88 GAVCHTINPRLFPEQIAYIVNHAEDRYVLFDLTFLPLVDALAPQCPNVKGWVAMTDAAHL 147
Query: 614 PNLS-------DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG- 665
P S L+ P + SL YTSGTTG PK A+ + +L
Sbjct: 148 PAGSTPLLCYETLVGAQDGDYDWPRFDENQASSL--CYTSGTTGNPKGALYSHRSTVLHA 205
Query: 666 -GQVGKHLLSLGSGDVIYNCLPMYH-SAGGL 694
G + L + D + +PM+H +A GL
Sbjct: 206 YGAALPDAMGLSARDAVLPVVPMFHVNAWGL 236
Score = 33.5 bits (77), Expect = 0.70
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
D +F +GD+ +D G++ DR+ D + GE +S++++E
Sbjct: 408 DGWFPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIE 448
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 40.9 bits (96), Expect = 0.005
Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 15/151 (9%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+++ +N++A +L G ++ + E E V L K G ++ +
Sbjct: 541 AELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVVGLLAVLKAGGAYVPLDPEYPQDR 600
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + + S ++ L + A ++ LDE L S
Sbjct: 601 LAYMLD--DSGVRLL--LTQSHLLAQLPVPAGLRSLCLDEPADLLCG---------YSGH 647
Query: 629 KPSEPLQTSDSLLY-IYTSGTTGLPKAAIMP 658
P E D+L Y IYTSG+TG PK +
Sbjct: 648 NP-EVALDPDNLAYVIYTSGSTGQPKGVAIS 677
Score = 32.4 bits (74), Expect = 1.8
Identities = 13/69 (18%), Positives = 29/69 (42%)
Query: 130 FKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 189
+ ++ P P F ++ + +++ +N++A +L G ++ + E E V
Sbjct: 518 IEAQARQHPERPALVFGEQVLSYAELNRQANRLAHVLIAAGVGPDVLVGIAVERSIEMVV 577
Query: 190 VWLGAAKLG 198
L K G
Sbjct: 578 GLLAVLKAG 586
Score = 30.9 bits (70), Expect = 4.7
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 595 RESIPD-VKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLP 652
R +PD ++ +LD+ L SD + PA + P +L Y IYTSG+TG P
Sbjct: 1684 RLPLPDGLRSLVLDQEDDWLEGYSD---SNPAVNLAP-------QNLAYVIYTSGSTGRP 1733
Query: 653 KAA 655
K A
Sbjct: 1734 KGA 1736
>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase.
Length = 666
Score = 39.5 bits (92), Expect = 0.011
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 852 IKQSDPS--RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDT 909
+K+S P R YG ++ E+ FKP Y+ SGD D+ GY + R D
Sbjct: 485 VKKSWPGAFRTLYGDHERYET------TYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDV 538
Query: 910 YRWKGENVSTMEVEATISKYLPYTEFTVYGVK 941
G + T EVE+ + + E V G++
Sbjct: 539 INVSGHRIGTAEVESALVSHPQCAEAAVVGIE 570
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA
synthetase (VL-FACS). This family of very long-chain
fatty acid CoA synthetase is named bubblegum because
Drosophila melanogaster mutant bubblegum (BGM) has
elevated levels of very-long-chain fatty acids (VLCFA)
caused by a defective gene of this family. The human
homolog (hsBG) has been characterized as a very long
chain fatty acid CoA synthetase that functions
specifically in the brain; hsBG may play a central role
in brain VLCFA metabolism and myelinogenesis. VL-FACS is
involved in the first reaction step of very long chain
fatty acid degradation. It catalyzes the formation of
fatty acyl-CoA in a two-step reaction: the formation of
a fatty acyl-AMP molecule as an intermediate, and the
formation of a fatty acyl-CoA. Free fatty acids must be
"activated" to their CoA thioesters before participating
in most catabolic and anabolic reactions.
Length = 594
Score = 39.3 bits (92), Expect = 0.012
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Query: 539 NRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIV-SALYYPEIEAIRES 597
N PE+ +GA G I+ I T + + T ++ ++V +A +I AI++
Sbjct: 42 NSPEWFIAAVGAIFAGGIAVGIYTTNSPEACQYVAETSEANILVVDNAKQLQKILAIQDQ 101
Query: 598 IPDVKLFLL--DETKPDLPNL------SDLMKTTPASEV-KPSEPLQTSDSLLYIYTSGT 648
+P +K + + K PNL +L ++ P ++ E + + IYTSGT
Sbjct: 102 LPHLKAIIQYREPLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLIYTSGT 161
Query: 649 TGLPKAAIM 657
TG+PK ++
Sbjct: 162 TGMPKGVML 170
Score = 34.3 bits (79), Expect = 0.36
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 859 RH-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK-GEN 916
RH F GY + +E ++ ++ D + SGD+ +D+ G+LY R + GEN
Sbjct: 398 RHVFMGYLNMEEKTEEAIDE-----DGWLHSGDLGFLDDDGFLYITGRIKELIITAGGEN 452
Query: 917 VSTMEVEATISKYLP 931
V + +E + K LP
Sbjct: 453 VPPVPIEEAVKKELP 467
>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated.
Length = 579
Score = 38.8 bits (91), Expect = 0.015
Identities = 43/201 (21%), Positives = 67/201 (33%), Gaps = 47/201 (23%)
Query: 517 KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA--LINTNLKK-----QPL 569
AR L G K GD +AL+ E ++V + G++ + L
Sbjct: 61 AGARRLLALGLKPGDRVALIAETDGDFVEAFFACQYAGLVPVPLPLPMGFGGRESYIAQL 120
Query: 570 VHSISTVKSKAIIVSALYYPEIEAIRESIPDVK------LFLLDETKPDLPNLSDLMKTT 623
+++ + AII P + P + L E LP
Sbjct: 121 RGMLASAQPAAIITPDELLPWVNEATHGNPLLHVLSHAWFKALPEADVALP--------- 171
Query: 624 PASEVKPSEP--LQTSDSLLYIYTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLSL 675
P + LQ Y+SG+T P+ A+M N + + L +
Sbjct: 172 ---RPTPDDIAYLQ--------YSSGSTRFPRGVIITHRALMANLRA-----ISHDGLKV 215
Query: 676 GSGDVIYNCLPMYHSAGGLIG 696
GD + LP YH GL+G
Sbjct: 216 RPGDRCVSWLPFYHDM-GLVG 235
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase. Proteins
in this family belong to the AMP-binding enzyme family
(pfam00501). Members activate 2,3-dihydroxybenzoate
(DHB) by ligation of AMP from ATP with the release of
pyrophosphate; many are involved in synthesis of
siderophores such as enterobactin, vibriobactin,
vulnibactin, etc. The most closely related proteine
believed to differ in function activates salicylate
rather than DHB [Transport and binding proteins, Cations
and iron carrying compounds].
Length = 526
Score = 37.8 bits (88), Expect = 0.031
Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 11/169 (6%)
Query: 493 ARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549
A DA A N + ++D+ ++ +A L G K+GD + N E+ V+
Sbjct: 33 AARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNIAEFYIVFFA 92
Query: 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYP-----EIEAIRESIPDVKLF 604
KLGV L + +K L S ++ I+ + ++ +P ++
Sbjct: 93 LLKLGVAPVLALFSHRKSELTAYASQIEPALYIIDRAHSLFDYDDFARQLQSKLPTLRNI 152
Query: 605 LLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
++ + L +PA V P ++ + + + G+TG PK
Sbjct: 153 IVAGQTGEAELFLWL--ESPAEPV-KFPPTKSDEVAFFQLSGGSTGTPK 198
Score = 35.2 bits (81), Expect = 0.23
Identities = 19/75 (25%), Positives = 34/75 (45%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
L + R P+A + W+ +++D+ ++ +A L G K+GD + N
Sbjct: 24 PLTDILRDQAARYPDAIAIICGNRQWSYRELDQRADNLAAGLTKLGIKQGDTAVVQLPNI 83
Query: 185 PEYVGVWLGAAKLGV 199
E+ V+ KLGV
Sbjct: 84 AEFYIVFFALLKLGV 98
>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate in
most catabolic and anabolic reactions.
Length = 455
Score = 37.7 bits (88), Expect = 0.033
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++DE S++IAR L+ G +KGD + LM + + K+G + LI+ + ++
Sbjct: 6 RELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAVPVLIDPGMGRKH 65
Query: 569 LVHSISTVKSKAII 582
L + + A I
Sbjct: 66 LGRCLEEAEPDAFI 79
Score = 30.4 bits (69), Expect = 6.0
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 151 TIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T +++DE S++IAR L+ G +KGD + LM + + K+G +
Sbjct: 4 TFRELDERSDRIARGLRASGIRKGDRVVLMVPPGADLTALTFALFKVGAV 53
>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated.
Length = 414
Score = 37.3 bits (87), Expect = 0.041
Identities = 35/124 (28%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEF 935
E V K GDK + D+ E G L+F R D G NV +EVE + + E
Sbjct: 283 EIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQEA 342
Query: 936 TVYGVKVGDLDGRAGMI--AIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTG 993
VY K D AG A V + ++D L + +L Y P + + I
Sbjct: 343 VVYRGK----DPVAGERVKAKVISHEEIDPVQLREWCIQHLAPYQVPHEIESVTEIPKNA 398
Query: 994 TFKI 997
K+
Sbjct: 399 NGKV 402
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase.
Length = 651
Score = 37.4 bits (87), Expect = 0.045
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 13/176 (7%)
Query: 526 GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSA 585
G KG + L NRPE++ V + +S + L + ++ + AI
Sbjct: 99 GIPKGACVGLYFINRPEWLIVDHACSAYSYVSVPLYDTLGPDAVKFIVNHAEVAAIFCVP 158
Query: 586 LYYPEIEAIRESIPDVKLFLL----DETKPDLP--------NLSDLMKTTPASEVKPSEP 633
+ + IP V+L ++ DE P LP S L+ +S P
Sbjct: 159 QTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPP 218
Query: 634 LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYH 689
+ D YTSGTTG PK ++ + ++ DV + LP+ H
Sbjct: 219 -KPEDVATICYTSGTTGTPKGVVLTHGNLIANVAGSSLSTKFYPSDVHISYLPLAH 273
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein]
synthetase/2-acylglycerophosphoethanolamine
acyltransferase; Validated.
Length = 718
Score = 37.0 bits (86), Expect = 0.061
Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 52/297 (17%)
Query: 518 IARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVK 577
+ RIL+ +G+ + LM N V GA+ I A++N + L +I+ +
Sbjct: 244 VGRILEKYS-VEGERIGLMLPNATISAAVIFGASLRRRIPAMMNYTAGVKGLTSAITAAE 302
Query: 578 SKAIIVSA--LYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLM-----KTTPASEVKP 630
K I S L ++ + E + V+ L++ K D+ +D + P
Sbjct: 303 IKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLEDLKDDV-TTADKLWIFAHLLMPRLAQVK 361
Query: 631 SEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHS 690
+P D+ L ++TSG+ G PK + + +L + K + D + LP++HS
Sbjct: 362 QQP---EDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIADFTPNDRFMSALPLFHS 418
Query: 691 AGGLIGTIPALILGSSIAIRTK-------------------FSASNYFRDCAKYKCNAGI 731
G +G L+ G+ + + F S + + A++ A
Sbjct: 419 FGLTVGLFTPLLTGAEVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARF---ANP 475
Query: 732 YIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWA-KFVKRFHVQTIIEFYGATE 787
Y RY++A E + + Q +W KF R I+E YG TE
Sbjct: 476 YDFARLRYVVAGAEKLQESTKQ------------LWQDKFGLR-----ILEGYGVTE 515
>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Saframycin A gene
cluster from Streptomyces lavendulae. The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and in some
cases, modification of a single amino acid residue of
the final peptide product. The modules can be subdivided
into domains that catalyze specific biochemical
reactions. This family includes the saframycin A gene
cluster from Streptomyces lavendulae which implicates
the NRPS system for assembling the unusual tetrapeptidyl
skeleton in an iterative manner. It also includes
saframycin Mx1 produced by Myxococcus xanthus NRPS.
Length = 449
Score = 36.9 bits (86), Expect = 0.066
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 130 FKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVG 189
+ +R P+A DE+ T +++ +N++A L+ G + + P+ V
Sbjct: 5 VEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSPDLVV 64
Query: 190 VWLGAAKLG 198
L K G
Sbjct: 65 ALLAVLKAG 73
Score = 35.7 bits (83), Expect = 0.12
Identities = 39/178 (21%), Positives = 61/178 (34%), Gaps = 59/178 (33%)
Query: 485 RFKQEASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRP 541
+ + A T DA A + A+++ +N++A L+ G + + P
Sbjct: 1 LHELVEAQAERTPDAIAVVCGDESLTYAELNRRANRLAARLRAAGVGPESRVGVCLRRSP 60
Query: 542 EYVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDV 601
+ V V L L V+ A A Y P + + P
Sbjct: 61 DLV-VAL----LAVLKA-------------------------GAAYVP----LDPAYPPE 86
Query: 602 KL-FLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPKA-AI 656
+L ++L++ L L D L Y IYTSG+TG PK AI
Sbjct: 87 RLAYILEDAGARLV-------------------LTDPDDLAYVIYTSGSTGRPKGVAI 125
Score = 34.6 bits (80), Expect = 0.29
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 863 GYADKKE-SQKKILENVFK--PGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
GY + E + ++ L N F PG++ + +GD++ G L + R D + +G +
Sbjct: 307 GYLGRPELTAERFLPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRGFRIEL 366
Query: 920 MEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV--DTSNQVDLKLLVQGLDANLPAY 977
E+EA + E V V +GD G ++A + D +D++ L L LPAY
Sbjct: 367 GEIEAALRSIPGVAEAVV--VAIGDAAGDRQLVAYIVADPGAAIDIEDLRARLATRLPAY 424
Query: 978 ARPLFVRIMKAIEMTGTFKIKKIQL 1002
P + A+ +T KI + L
Sbjct: 425 MVPSRFVRLDALPLTPNGKIDRKAL 449
>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase.
Length = 660
Score = 36.4 bits (84), Expect = 0.10
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 633 PLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSL-----GSGDVIYNCLPM 687
P Q +D +YTSGTTG PK I+ N ++ HLL + D ++ LP+
Sbjct: 216 PKQKTDICTIMYTSGTTGEPKGVILTNRAIIAEVLSTDHLLKVTDRVATEEDSYFSYLPL 275
Query: 688 YHSAGGLIGTIPALILGSSI 707
H +I T + G+SI
Sbjct: 276 AHVYDQVIETY-CISKGASI 294
>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional.
Length = 1296
Score = 36.2 bits (84), Expect = 0.12
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 611 PDLPNLSDLMKTTP--ASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
D+P+L+ L P P + Q + I+TSG+TG PK
Sbjct: 570 ADVPDLTSLCYNAPLAPQGAAPLQLSQPHHTAYIIFTSGSTGRPK 614
Score = 35.4 bits (82), Expect = 0.19
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 124 TTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179
TTL + + + P+AP ++ +++ E +A +L++ G K GD +A+
Sbjct: 458 TTLSALVAQQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSVAV 513
>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional.
Length = 552
Score = 35.6 bits (83), Expect = 0.14
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 31/164 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++D S+ IA L G +G LM E+ + K G + L++ + +
Sbjct: 45 AELDARSDAIAHGLNAAGIGRGMRAVLMVTPSLEFFALTFALFKAGAVPVLVDPGMGIKN 104
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL--FLLDETKPDL------------- 613
L ++ + A I IP L L KP +
Sbjct: 105 LKQCLAEAQPDAFI--------------GIPKAHLARRLFGWGKPSVRRLVTVGGRLLWG 150
Query: 614 -PNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAI 656
L+ L++ A+ + L D ++TSG+TG PK +
Sbjct: 151 GTTLATLLRDGAAAPFPMA-DLAPDDMAAILFTSGSTGTPKGVV 193
>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit
1; Provisional.
Length = 503
Score = 35.3 bits (82), Expect = 0.19
Identities = 33/145 (22%), Positives = 54/145 (37%), Gaps = 16/145 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ E S+ +A + + + PE + +LGA K G ++ + +
Sbjct: 31 GQLKEDSDALAAFIDSLKLPDKSPIIVFGHMSPEMLATFLGAVKAGHAYIPVDVSSPAER 90
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ I K II E + I + + LDE L D+ T
Sbjct: 91 IEMIIEVAKPSLII-------ATEELPLEILGIPVITLDE-------LKDIFATGN--PY 134
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPK 653
++ D+ I+TSGTTG PK
Sbjct: 135 DFDHAVKGDDNYYIIFTSGTTGKPK 159
Score = 31.0 bits (71), Expect = 4.0
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 126 LVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQD 168
++ ++ + +P+ P Y + E T Q+ E S+ +A +
Sbjct: 4 IIETIEEFAQTQPDFPAYDYLGEKLTYGQLKEDSDALAAFIDS 46
>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.
Length = 637
Score = 35.1 bits (82), Expect = 0.25
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
+L+ AS+ EP+ D L +YTSG+TG PK
Sbjct: 228 ELVA--GASDECEPEPMDAEDPLFILYTSGSTGKPK 261
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 35.1 bits (81), Expect = 0.26
Identities = 28/165 (16%), Positives = 66/165 (40%), Gaps = 7/165 (4%)
Query: 374 EELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKSN 433
EEL E + +L + E+ L E+ + EI L + E + E + +
Sbjct: 270 EELKSELEELREELEELQEELLE-LKEEIEELEGEISLLRERLEELENELEELEERLEE- 327
Query: 434 HVIEKQAINFDQQDEEYVIDEAALLDEE-EMTEFVRQLQSKIEQL--EVDVTYSRFKQEA 490
++++ ++ EE L E+ E +L+ K+ L E++ + ++E
Sbjct: 328 --LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 491 SNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLAL 535
+ + ++ L+ +I+ ++ R+ + K ++ L
Sbjct: 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKEL 430
Score = 30.8 bits (70), Expect = 4.6
Identities = 25/138 (18%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 408 EIEKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDE--EEMTE 465
E E E E+ E L + + E+ ++ DE + +E L++ EE+ E
Sbjct: 806 ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE--LEEELEELEKELEELKE 863
Query: 466 FVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDD 525
+ +L+++ E+LE + ++E + + L+ +I++ ++ +
Sbjct: 864 ELEELEAEKEELEDE--LKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKL 921
Query: 526 GFKKGDVLALMCENRPEY 543
+ ++ L E EY
Sbjct: 922 ERLEVELPELEEELEEEY 939
Score = 30.5 bits (69), Expect = 6.8
Identities = 21/124 (16%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 403 ATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEE 462
+ +E+ +L ++ E EE + L ++ + + Q +E E +
Sbjct: 670 KELEEELAEL--EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAA 727
Query: 463 MTEFVRQLQSKIEQLE-----VDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNK 517
+ E + QLQS++E+LE ++ ++ ++ + L+ +I+E K
Sbjct: 728 LEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEK 787
Query: 518 IARI 521
+
Sbjct: 788 RQAL 791
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 34.7 bits (80), Expect = 0.30
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 645 TSGTTGLPKAAIMPNFKVL--LGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALI 702
T+G+TG P+ AI+ VL L G + L + DV + LP+YH GL + A +
Sbjct: 160 TAGSTGTPRTAILSPGAVLSNLRGLNARVGLDAAT-DVGCSWLPLYHDM-GLAFLLTAAL 217
Query: 703 LGSSI--AIRTKFSAS 716
G+ + A T FSAS
Sbjct: 218 AGAPLWLAPTTAFSAS 233
>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional.
Length = 647
Score = 34.7 bits (80), Expect = 0.30
Identities = 107/493 (21%), Positives = 181/493 (36%), Gaps = 111/493 (22%)
Query: 503 TVKNLEAQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINT 562
T+K Q+ E + +R+L + K D + + N E + L A++G ++
Sbjct: 90 TIKLTYYQLYEKVCEFSRVLLNLNISKNDNVLIYMANTLEPLIAMLSCARIGATHCVLFD 149
Query: 563 NLKKQPLVHSISTVKSKAIIVS--ALYYPEI--------EAIRESI--PD--VKLFLLDE 608
+ L+ I T+ K II + + EI EAI S P + LF D
Sbjct: 150 GYSVKSLIDRIETITPKLIITTNYGILNDEIITFTPNLKEAIELSTFKPSNVITLFRNDI 209
Query: 609 TKPDLPNLSDLMKTTPAS-----EVKPSE-----------PLQTSDSLLYIYTSGTTGLP 652
T + + T P + E+K + P+++S L +YTSGTTG
Sbjct: 210 TSESDLKKIETIPTIPNTLSWYDEIKKIKENNQSPFYEYVPVESSHPLYILYTSGTTGNS 269
Query: 653 KAAIMPNFKVLLGGQVGKHLLSLG---SGDVIYNCLPMYHSA---------GGLIGTIPA 700
KA + N G HL+ L + + + S G L G+
Sbjct: 270 KAVVRSN---------GPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVSFHGFLYGS--- 317
Query: 701 LILGSSIA------IRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLA----SKESEADY 750
L LG++ I+ K + + K+K + + + RYL+ + + Y
Sbjct: 318 LSLGNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY 377
Query: 751 SHQVVKMIGVGMRGDIWAKFVKRFHVQTI----IEFYGATEGNANLV----NMDNTEGAV 802
+K I G G++ + + + + YG TE + +++ A
Sbjct: 378 DLSNLKEIWCG--GEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNAT 435
Query: 803 GI-IPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDP---- 857
G+ + P+ L +L N+ IGE+ P
Sbjct: 436 GVPSIFIKPSILSEDGK---ELNVNE---------------------IGEVAFKLPMPPS 471
Query: 858 -SRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGEN 916
+ FY K + + K L + F PG Y+ SGD+ DE GY R+ D + G
Sbjct: 472 FATTFY----KNDEKFKQLFSKF-PG--YYNSGDLGFKDENGYYTIVSRSDDQIKISGNK 524
Query: 917 VSTMEVEATISKY 929
V +E +I K+
Sbjct: 525 VQLNTIETSILKH 537
>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional.
Length = 536
Score = 34.2 bits (79), Expect = 0.40
Identities = 32/153 (20%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGV--ISALINTNLKK 566
++++ S+ +A L+ G K GD + N E+ + KLGV ++AL + +
Sbjct: 52 RELNQASDNLACSLRRQGIKPGDTALVQLGNVAEFYITFFALLKLGVAPVNALFSHQ--R 109
Query: 567 QPLVHSISTVKSKAIIVS---ALYYPE--IEAIRESIPDVKLFLLDETKPDLPNLSDLMK 621
L S ++ +I AL+ + + + +++ LL + +L D +
Sbjct: 110 SELNAYASQIEPALLIADRQHALFSDDDFLNTLVAEHSSLRVVLLLNDDGEH-SLDDAIN 168
Query: 622 TTPASEVKPSEPLQTSDSLLYIYTS-GTTGLPK 653
P +D + + S G+TG PK
Sbjct: 169 HPAEDFTATPSP---ADEVAFFQLSGGSTGTPK 198
Score = 30.3 bits (69), Expect = 6.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVE 923
+ ++ SGD++ +D GY+ R D GE ++ E+E
Sbjct: 408 NGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIE 448
>gnl|CDD|113664 pfam04899, MbeD_MobD, MbeD/MobD like. The MbeD and MobD proteins
are plasmid encoded, and are involved in the plasmids
mobilisation and transfer in the presence of conjugative
plasmids.
Length = 70
Score = 31.0 bits (70), Expect = 0.49
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 9/70 (12%)
Query: 463 MTEFVRQLQSKIEQLEVDVT---------YSRFKQEASNARSTNDAAATTVKNLEAQIDE 513
MTE QL S +EQL+ D ++ ++ + N A + V L Q+
Sbjct: 1 MTELETQLLSALEQLQQDYEQRLQEWESAFAELQRMFGLTQRENAALSEQVTGLSQQVQS 60
Query: 514 YSNKIARILQ 523
S ++ R+ +
Sbjct: 61 LSEQVRRLSR 70
>gnl|CDD|234212 TIGR03443, alpha_am_amid, L-aminoadipate-semialdehyde
dehydrogenase. Members of this protein family are
L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31),
product of the LYS2 gene. It is also called
alpha-aminoadipate reductase. In fungi, lysine is
synthesized via aminoadipate. Currently, all members of
this family are fungal.
Length = 1389
Score = 34.3 bits (79), Expect = 0.50
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 149 TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
++T KQI+E SN +A L G K+GDV+ + Y GV L A +GV+
Sbjct: 270 SFTYKQINEASNILAHYLLKTGIKRGDVVMIYA-----YRGVDLVVAVMGVL 316
Score = 32.0 bits (73), Expect = 2.3
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISA 558
QI+E SN +A L G K+GDV+ + Y GV L A +GV+ A
Sbjct: 274 KQINEASNILAHYLLKTGIKRGDVVMIYA-----YRGVDLVVAVMGVLKA 318
>gnl|CDD|227731 COG5444, COG5444, Uncharacterized conserved protein [Function
unknown].
Length = 565
Score = 33.6 bits (77), Expect = 0.61
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 28/154 (18%)
Query: 393 DANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVIE----------KQAIN 442
D + LSE D+ I K ++ +E L V E I+
Sbjct: 5 DVDQLLSEADSRI-KALKSYGD---------QFEKLEKAIKRVAELDDAFKGKGADNIIS 54
Query: 443 FDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLE----VDVTYSRFKQEASNARSTND 498
F Q+ + + + M + S I + E V + K E N
Sbjct: 55 F-YQENQLPTIRSIRIFLISMKIAFEKSISAILEDEPLSNGYVEEAFLKHELPNGYDR-- 111
Query: 499 AAATTVKNLEAQIDEYSNKIARILQDDGFKKGDV 532
++ + I + + ++ IL D
Sbjct: 112 -YEEIMEEQKKAIKDILSDVSHILDLGKLDTEDF 144
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 33.2 bits (76), Expect = 0.94
Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 16/145 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
Q+ E S+++A +Q K + + P + +LG+ K G ++T++ +
Sbjct: 29 QQLKEQSDRLAAFIQKRILPKKSPIIVYGHMEPHMLVAFLGSIKSGHAYIPVDTSIPSER 88
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ I + +I + ++ L + +T+ V
Sbjct: 89 IEMIIEAAGPELVI-------HTAELSIDAVGTQIITLSAL--------EQAETSGGP-V 132
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPK 653
++ D+ IYTSG+TG PK
Sbjct: 133 SFDHAVKGDDNYYIIYTSGSTGNPK 157
>gnl|CDD|213914 TIGR04301, ODC_inducible, ornithine decarboxylase SpeF. Members of
this family are known or trusted examples of ornithine
decarboxylase, all encoded in the immediate vicinity of
an ornithine-putrescine antiporter. Decarboxylation of
ornithine to putrescine, followed by exchange of a
putrescine for a new ornithine, is a proton-motive cycle
that can be induced by low pH and protect a bacterium
against transient exposure to acidic conditions.
Length = 719
Score = 33.2 bits (76), Expect = 0.97
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 378 INKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSS-------ESEDGEEVWEDLPD 430
N+E+V ++ F++ A V +S DD +E++ ++ D E V ++
Sbjct: 18 TNREVVDINNTDFTDVAAVVISVDDIKNGV-LEQIEETGFGIPVFVILNDEETVPAEILP 76
Query: 431 KSNHVIEKQAINFDQQDEEYV---IDEAALLDEEEM-TEFVRQLQSKIEQ 476
+ VI+ ++ D ++ I+ AA EE++ F L +EQ
Sbjct: 77 RVTGVID-----LNESDIDFYGRQIETAATKYEEKLLPPFFGALVKYVEQ 121
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 31.9 bits (73), Expect = 1.1
Identities = 14/82 (17%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 438 KQAINF-DQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARST 496
KQ I +Q E DE + ++ + +L+ +++ L+ D + + ++ + T
Sbjct: 55 KQKIYLCNQDQFELPSDE----ELNKLDMEIEELREEVQLLKQDCSTLEIELKSLTSDLT 110
Query: 497 NDAAATTVKNLEAQIDEYSNKI 518
+ ++ L+ ++ E K+
Sbjct: 111 TEELQEEIQELKKEVREIEEKL 132
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 32.5 bits (75), Expect = 1.4
Identities = 33/175 (18%), Positives = 78/175 (44%), Gaps = 22/175 (12%)
Query: 365 YAVELFDLDEEL--------NINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSS 416
Y ++ D+++E+ L LDL + E+ N + E ++ +E+
Sbjct: 247 YHLDHLDIEKEIQDLKEQIDENLALLEELDLDEA-EEKNEEIQERIDQLYDILER----- 300
Query: 417 ESEDGEEVWEDLPDKSNHVIEKQAINFDQQDE-EYVIDEAALLDEEEMTEFVRQLQSKIE 475
E + + V ++ + + + N + ++E + V ++ L+E E+ E VRQL+ ++E
Sbjct: 301 EVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRV-KQSYTLNESEL-ESVRQLEKQLE 358
Query: 476 QLE--VDVTYSRFKQEA---SNARSTNDAAATTVKNLEAQIDEYSNKIARILQDD 525
LE D R ++ S + + ++ +E + ++ S + + +D+
Sbjct: 359 SLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDE 413
>gnl|CDD|223446 COG0369, CysJ, Sulfite reductase, alpha subunit (flavoprotein)
[Inorganic ion transport and metabolism].
Length = 587
Score = 32.4 bits (74), Expect = 1.6
Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 12/126 (9%)
Query: 452 IDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARS-TNDAAATTVKNLEAQ 510
+ AA +++ E L+SK E ++ + S + A ++N +
Sbjct: 177 FEAAAAPWRDDVLEL---LKSKFPGQEAAPAQVATSPQSESPYSKPAPSVAILLENRKLT 233
Query: 511 IDEYSNKIARILQDDG------FKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNL 564
+ S+K R ++ D ++ GD L + EN PE V +L L + +
Sbjct: 234 GRD-SDKDVRHIELDLPDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEE-PVTVDG 291
Query: 565 KKQPLV 570
+ PLV
Sbjct: 292 ETLPLV 297
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 32.1 bits (73), Expect = 1.9
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 13/120 (10%)
Query: 415 SSESEDGEEVWEDLPDKSNHVI--------EKQAINFDQQDEEYVIDEAALLDEE--EMT 464
+S GE+ ++ + EK+A Q E + L+E+
Sbjct: 18 CEDSIKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQK 77
Query: 465 EFVRQLQSK-IEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQ 523
+ + L ++ I+Q E+ + K EA N ++ LE ++DE S ++ + LQ
Sbjct: 78 KEQKNLFNEQIKQFELALQDEIAKLEAL--ELLNLEKDKELELLEKELDELSKELQKQLQ 135
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 32.0 bits (74), Expect = 2.2
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 436 IE----KQAINFDQQDEEYVIDEAALL--DEEEMTEFVRQLQSKIEQLEVDVTYSRFKQE 489
IE + A+ + + E + + AALL E+ E V L ++++LE ++ + K +
Sbjct: 684 IEAVTGEAALEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEKEL--EQLKAK 741
Query: 490 ASNARSTNDAAATT----VKNLEAQIDEYSNKIARILQDDGFKK--GDVLAL 535
+ A + + A VK L AQ++ K R L DD K V+ L
Sbjct: 742 LAAAAAGDLLAQAKEVNGVKVLAAQVEGVDAKALRTLADDLKDKLGSGVVVL 793
>gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as
found in prokaryota and eukaryota, and similar proteins.
The typical glycerophosphodiester phosphodiesterase
domain (GDPD) consists of a TIM barrel and a small
insertion domain named the GDPD-insertion (GDPD-I)
domain, which is specific for GDPD proteins. This family
corresponds to both typical GDPD domain and GDPD-like
domain which lacks the GDPD-I region. Members in this
family mainly consist of a large family of prokaryotic
and eukaryotic glycerophosphodiester phosphodiesterases
(GP-GDEs, EC 3.1.4.46), and a number of uncharacterized
homologs. Sphingomyelinases D (SMases D) (sphingomyelin
phosphodiesterase D, EC 3.1.4.41) from spider venom,
SMases D-like proteins, and phospholipase D (PLD) from
several pathogenic bacteria are also included in this
family. GDPD plays an essential role in glycerol
metabolism and catalyzes the hydrolysis of
glycerophosphodiesters to sn-glycerol-3-phosphate (G3P)
and the corresponding alcohols are major sources of
carbon and phosphate. Its catalytic mechanism is based
on the metal ion-dependent acid-base reaction, which is
similar to that of phosphoinositide-specific
phospholipases C (PI-PLCs, EC 3.1.4.11). Both, GDPD
related proteins and PI-PLCs, belong to the superfamily
of PI-PLC-like phosphodiesterases.
Length = 189
Score = 31.1 bits (71), Expect = 2.2
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 581 IIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQT 636
++VS+ + + A++E P+V LL + P P L++L + A V P L T
Sbjct: 94 VVVSSFDHEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVNPHYKLLT 149
>gnl|CDD|212107 cd10795, GH57N_MJA1_like, N-terminal catalytic domain of a
thermoactive alpha-amylase from Methanococcus jannaschii
and similar proteins; glycoside hydrolase family 57
(GH57). The subfamily is represented by a thermostable
alpha-amylase (MJA1, EC 3.2.1.1) encoded from the
hyperthermophilic archaeon Methanococcus jannaschii
locus, M J1611. MJA1 has a broad pH optimum 5.0-8.0. It
exhibits extremely thermophilic alpha-amylase activity
that catalyzes the hydrolysis of large sugar polymers
with alpha-l,6 and alpha-l,4 linkages, and yields
products including glucose polymers of 1-7 units. MJ1611
also encodes another alpha-amylase with catalytic
features distinct from MJA1, which belongs to glycoside
hydrolase family 13 (GH-13), and is not included here.
This subfamily also includes many uncharacterized
proteins found in bacteria and archaea.
Length = 306
Score = 31.4 bits (72), Expect = 2.5
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 22/74 (29%)
Query: 455 AALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEY 514
A+L D++E E V+ + I++L F + T +N E I Y
Sbjct: 110 ASLFDKDEFREQVKMHRELIKEL--------FGVKP-----------TVFRNTEL-I--Y 147
Query: 515 SNKIARILQDDGFK 528
S+ IA I +D GFK
Sbjct: 148 SDDIAEIAEDMGFK 161
>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed.
Length = 452
Score = 31.5 bits (72), Expect = 2.8
Identities = 16/48 (33%), Positives = 20/48 (41%)
Query: 879 FKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI 926
F + D+ +D GYL+ R GENV EVEA I
Sbjct: 319 ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAI 366
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 31.4 bits (72), Expect = 3.4
Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 18/130 (13%)
Query: 407 KEIEKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLD-EEEMTE 465
+E+ KL E E E +L +++++ D++ E E L E+E++
Sbjct: 58 EEVHKLRAELERELKERR-NELQRLERRLLQREE-TLDRKMESLDKKEENLEKKEKELSN 115
Query: 466 FVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDA---------------AATTVKNLEAQ 510
+ L K E+LE + R + E + + +A AA +K +E +
Sbjct: 116 KEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEE 175
Query: 511 IDEYSNKIAR 520
E ++K A+
Sbjct: 176 AKEEADKKAK 185
>gnl|CDD|131425 TIGR02372, 4_coum_CoA_lig, 4-coumarate--CoA ligase, photoactive
yellow protein activation family. This model represents
the 4-coumarate--CoA ligase associated with biosynthesis
of the 4-hydroxy cinnamyl (also called 4-coumaroyl)
chromophore covalently linked to a Cys residue in
photoactive yellow protein of Rhodobacter spp. and
Ectothiorhodospira halophila. This enzyme is designated
6.2.1.12 and therefore joins a number of plant enzymes
linked to lignin biosynthesis and given similar names.
Length = 386
Score = 31.0 bits (70), Expect = 4.0
Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 645 TSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGS--GDVIYNCLPMYHSAGGLIGTIPALI 702
TSG+TG PK +L Q +L + +C+P +H G L +
Sbjct: 103 TSGSTGTPKPVTHSWAALLSEAQAIAKILGERPPPVRRVISCVPAHHLYGFLFSCLLPSR 162
Query: 703 LGSSIAIRTKFSASNYFRDCA 723
G AS R
Sbjct: 163 RGLEAKQLAAAPASGIMRHAR 183
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 31.1 bits (70), Expect = 4.0
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 635 QTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL-----SLGSGDVIYNCLPMYH 689
+ SD +YTSGTTG PK ++ N ++ LL +L DV + LP+ H
Sbjct: 221 KKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIRLLKSANAALTVKDVYLSYLPLAH 280
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 31.0 bits (70), Expect = 4.1
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 392 EDANVCLSEDDATIFKEIEKLMQSSES--EDGEEVWEDLPDKSNHVIEKQAINFDQQDEE 449
++ ++ ++DD + IE SES EDGEE ++ ++N + + +
Sbjct: 651 DEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPK 710
Query: 450 YVIDEAALLDEEEMTE 465
+ AL + E
Sbjct: 711 VLNLPDALDGGDSEDE 726
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 31.1 bits (70), Expect = 4.3
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 374 EELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKSN 433
E L KE + +L+K +D E+ +E EK ++ +SE D +SN
Sbjct: 597 ETLKSEKENLDGELSKCKDD-----LEESKNKLQETEKKLEELKSE------LDASQESN 645
Query: 434 HVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNA 493
+ E Q E Y E+ L +++ + LQ KI LE ++ R + A
Sbjct: 646 SLAETQ---LKCMVESY---ESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIA 699
Query: 494 R 494
+
Sbjct: 700 K 700
>gnl|CDD|203446 pfam06428, Sec2p, GDP/GTP exchange factor Sec2p. In Saccharomyces
cerevisiae, Sec2p is a GDP/GTP exchange factor for
Sec4p, which is required for vesicular transport at the
post-Golgi stage of yeast secretion.
Length = 90
Score = 28.5 bits (64), Expect = 4.5
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 455 AALLDEEEMTEFVRQLQSKIEQLEV-DVTYSRFKQEA----SNARSTNDAAATTVKNLEA 509
A L +E++ + + K+EQ EV D+T S F EA ++AR +A + LE
Sbjct: 1 ADLAEEKKKRLRAEKEKKKLEQ-EVEDLTASLF-DEANKMVADARREREAVEIKNEKLEE 58
Query: 510 QIDE 513
Q+ E
Sbjct: 59 QLKE 62
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 30.9 bits (70), Expect = 4.9
Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 9/150 (6%)
Query: 373 DEELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKS 432
+E EL L+L + E+ + +++A + +EIE+L + + E + +++
Sbjct: 469 EEHEKELLELYELELEELEEELS--REKEEAELREEIEELEKELRELEEELIELLELEEA 526
Query: 433 NHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASN 492
++ + + E E L E+ + QL+ ++ QLE + + E
Sbjct: 527 LKEELEEKLEKLENLLE----ELEELKEKLQLQ---QLKEELRQLEDRLQELKELLEELR 579
Query: 493 ARSTNDAAATTVKNLEAQIDEYSNKIARIL 522
T ++ ++ + ++ L
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERL 609
>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2). Dip2 proteins
show sequence similarity to other members of the
adenylate forming enzyme family, including insect
luciferase, acetyl CoA ligases and the adenylation
domain of nonribosomal peptide synthetases (NRPS).
However, its function may have diverged from other
members of the superfamily. In mouse embryo, Dip2
homolog A plays an important role in the development of
both vertebrate and invertebrate nervous systems. Dip2A
appears to regulate cell growth and the arrangement of
cells in organs. Biochemically, Dip2A functions as a
receptor of FSTL1, an extracellular glycoprotein, and
may play a role as a cardiovascular protective agent.
Length = 556
Score = 30.6 bits (69), Expect = 5.3
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 149 TWTIKQIDEYSNKIARILQDDGF-KKGDVLALMCENRPEYVGVWLGAAKLGVI 200
T T ++ + KIA L K GD + L+ + +++ + G G+I
Sbjct: 9 TLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGLI 61
Score = 30.6 bits (69), Expect = 6.3
Identities = 47/246 (19%), Positives = 86/246 (34%), Gaps = 24/246 (9%)
Query: 498 DAAATTVKNLE-AQIDEYSNKIARILQDDGF-KKGDVLALMCENRPEYVGVWLGAAKLGV 555
D + L ++ + KIA L K GD + L+ + +++ + G G+
Sbjct: 1 DGNGKPLYTLTYGKLWSRAAKIAYALLKKLGIKPGDRVVLVYPDPEDFIAAFYGCLYAGL 60
Query: 556 ISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDL-- 613
I + +P + + + A++ S +Y + S +K T L
Sbjct: 61 IPVPV------EPPLSRAGSQQVGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKF 114
Query: 614 ---PNLSDLMKTTPASEVKPSEPLQ-----TSDSLLYI-YTSGTTGLPKAAIMPNFKVLL 664
P L + T + KP + + YI Y + G + + +L
Sbjct: 115 KGWPRLVWFV-TEIKTLKKPIKDWNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLT 173
Query: 665 GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILG-SSIAI---RTKFSASNYFR 720
Q K G I N L G G + +++ G +I I K + +F+
Sbjct: 174 HCQALKQACQYTEGRTIVNVLDFKKGVGFWHGCLTSVMNGMHTILIPPALMKNNPLLWFQ 233
Query: 721 DCAKYK 726
+KYK
Sbjct: 234 IISKYK 239
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 30.4 bits (69), Expect = 5.7
Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 8/116 (6%)
Query: 417 ESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIE- 475
E E+ +D V E+ I DE + D + L+S I+
Sbjct: 130 EDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLESLIDA 189
Query: 476 ---QLEVDVTYSRFKQ----EASNARSTNDAAATTVKNLEAQIDEYSNKIARILQD 524
+LEV+ + K +A + RS + K + + E + ++ QD
Sbjct: 190 AEWKLEVERVLPQLKVTIKTDAKDWRSHLEQMHQLKKAISKSLPETKQYLKKLSQD 245
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.4 bits (69), Expect = 7.1
Identities = 17/119 (14%), Positives = 45/119 (37%), Gaps = 20/119 (16%)
Query: 419 EDGEEVWEDLPDKSNHVIEKQ--AINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQ 476
+G + + DK ++ ++ + E ++DE E ++ + +L++KI
Sbjct: 295 SEGPDRITKIKDK-LKELQHSLEKLDTAIDELEEIMDEFN-----EQSKKLLELKNKIST 348
Query: 477 LEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARI---LQDDGFKKGDV 532
KQ ++ L+A+ + + ++A++ L K ++
Sbjct: 349 ---------NKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398
>gnl|CDD|129865 TIGR00783, ccs, citrate carrier protein, CCS family. These
proteins are members of the Citrate:Cation Symporter
(CCS) Family (TC 2.A.24). These proteins have 12 GES
predicted transmembrane regions. Most members of the CCS
family catalyze citrate uptake with either Na+ or H+ as
the cotransported cation. However, one member is
specific for L-malate and probably functions by a proton
symport mechanism [Unclassified, Role category not yet
assigned].
Length = 347
Score = 29.7 bits (67), Expect = 8.4
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 38/191 (19%)
Query: 638 DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGT 697
SL+YI +MP ++ G VG ++ L +IY+ + S+ +
Sbjct: 82 HSLMYI------------VMP----IMAGGVGAGIVPL---SIIYSAI-TGRSSEEIFSQ 121
Query: 698 -IPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKESEADYSHQV-- 754
IPA+I+G+ AI S + K + GE+ R +A ++
Sbjct: 122 LIPAVIIGNIFAIICAGLLSRIGKKRPKLNGH-----GELVRSEKREDAEKAKEITEIKI 176
Query: 755 -VKMIGVG--------MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGII 805
VK++G G M G + K + A LV + EGA +
Sbjct: 177 DVKLMGSGVLFAVALFMAGGL-LKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLS 235
Query: 806 PTLLPTFLHPV 816
+ P+
Sbjct: 236 QFISKNLTWPL 246
>gnl|CDD|227778 COG5491, VPS24, Conserved protein implicated in secretion [Cell
motility and secretion].
Length = 204
Score = 29.4 bits (66), Expect = 8.6
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 344 TRLFARVVSVKLHGEETGGRRYAVEL------FDLDEELNINKELVALDLAKFSEDANVC 397
T LF +VV ++ G+ Y EL L E + ELV L L E +V
Sbjct: 66 TMLFEKVVMRQVSGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVV 125
Query: 398 LSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVID-EAA 456
+ + +E+++L+ E G E+ E +V+E ++ E I EA
Sbjct: 126 VGDPVLEDLEELDELVNKVLPEIGLELDESEQSLPANVVENGSVPAAVSPEARKILEEAE 185
Query: 457 LLDEEEMTEFVRQLQSK 473
+ E+ + E +R+L +
Sbjct: 186 KIAEDRLQERLRELPAL 202
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 29.9 bits (67), Expect = 8.6
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 482 TYSRFKQEASNARSTNDAAATTVK----NLEAQIDEYSNKI----ARILQDD 525
Y + Q R + A +K LE I + +KI A IL+++
Sbjct: 445 EYRQQAQALQQERRATEEALEPLKDQLAELEQAIKDQRSKISNVRANILKNE 496
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 30.0 bits (68), Expect = 9.1
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 19/90 (21%)
Query: 453 DEAALLDEEEMTEFVRQLQSKIEQLE------------VDVTYSRFKQEASNARSTNDAA 500
+ L EE+ E ++L KI +LE ++ T SR + E + + + A
Sbjct: 309 ESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQSELEDLQIELERA 368
Query: 501 ATTV-------KNLEAQIDEYSNKIARILQ 523
KN + + E+ K+ +
Sbjct: 369 NAAASELEKKQKNFDKILAEWKRKVDELQA 398
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 30.0 bits (68), Expect = 9.2
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 449 EYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLE 508
E +++E ++ E +++ KI +LE ++ R DA + LE
Sbjct: 271 EQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKE-RELEDAEER-LAKLE 328
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCE 538
A+ID+ +I + ++ ++ L E
Sbjct: 329 AEIDKLLAEIEELEREIEEERKRRDKLTEE 358
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 56,977,909
Number of extensions: 5780593
Number of successful extensions: 6558
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6311
Number of HSP's successfully gapped: 446
Length of query: 1102
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 995
Effective length of database: 6,191,724
Effective search space: 6160765380
Effective search space used: 6160765380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.3 bits)