RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12852
(1102 letters)
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase;
1.84A {Burkholderia xenovorans}
Length = 529
Score = 190 bits (485), Expect = 7e-52
Identities = 95/524 (18%), Positives = 185/524 (35%), Gaps = 73/524 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+++E + + A L+ G + + L+ + +LGA GV+ + NT L
Sbjct: 52 GELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVANTLLTPAD 111
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL-----DETKPDLPNLSDLMKTT 623
V+ ++ ++A+I S + ES L+ + P +L+
Sbjct: 112 YVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDA- 170
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG--QVGKHLLSLGSGDVI 681
A+ + D ++Y+SG+TG PK + L K +L + DV+
Sbjct: 171 -AAPAAKAAATGCDDIAFWLYSSGSTGKPKGT-VHTHANLYWTAELYAKPILGIAENDVV 228
Query: 682 YNCLPMYHSAGGLIGTIPALILG-SSIAIRTKFSASNYFRDCAKYKCNAGIYIGE--MCR 738
++ ++ + G G L +G ++I + + +A F +++ ++ G +
Sbjct: 229 FSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPT--VFYGVPTLYA 286
Query: 739 YLLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVN-- 794
+L S A + G + +I +F F I++ G+TE ++
Sbjct: 287 NMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC-EILDGIGSTEMLHIFLSNR 345
Query: 795 -MDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGEI 852
G G P + + + D + D + G L I+ P
Sbjct: 346 AGAVEYGTTG-----RPVPGYEIELR--D-EAGHAVPDGEVGDLYIKG----PSA----- 388
Query: 853 KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
Y + +E + F + SGD G + R+ D +
Sbjct: 389 --------AVMYWNNREKSRA----TFLGE--WIRSGDKYCRLPNGCYVYAGRSDDMLKV 434
Query: 913 KGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAGMI--AIVDTSNQVDLKL 965
G+ VS +EVE + E V GV G +V ++
Sbjct: 435 SGQYVSPVEVEMVL-----VQHDAVLEAAVVGVD----HGGLVKTRAFVVLKREFAPSEI 485
Query: 966 LVQGLDA----NLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L + L A L + P + + + T T KI++ +L+ +
Sbjct: 486 LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
Score = 82.2 bits (204), Expect = 3e-16
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 126 LVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRP 185
+ + + R Y + T +++E + + A L+ G + + L+ +
Sbjct: 25 FAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTV 84
Query: 186 EYVGVWLGAAKLGVI 200
+LGA GV+
Sbjct: 85 ALPVAFLGALYAGVV 99
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A*
Length = 503
Score = 183 bits (466), Expect = 1e-49
Identities = 114/510 (22%), Positives = 191/510 (37%), Gaps = 63/510 (12%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + ++A +L G + GD +A E E + ++L + G + +NT
Sbjct: 32 AELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTAYTLHE 91
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L + I+ + K ++ I AI + L + + L + + ASE
Sbjct: 92 LDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRGSLTDAAA-----GASEA 146
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ D +YTSGTTG K A++ + + DV+ + LP+Y
Sbjct: 147 FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIY 206
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG---IYIGEMCRYLLASKE 745
H+ G + + L S+ KF A+ G Y R L + +
Sbjct: 207 HTHGLFVASNVTLFARGSMIFLPKFDPDKILDLMARATVLMGVPTFYT----RLLQSPRL 262
Query: 746 SEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTE--- 799
++ H +++ G + D ++ + ++E YG TE N N N + +
Sbjct: 263 TKETTGH--MRLFISGSAPLLADTHREWSAKTGH-AVLERYGMTETNMNTSNPYDGDRVP 319
Query: 800 GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR 859
GAVG + DP+TG + G IG I+ P+
Sbjct: 320 GAVG-----PALPGVSARVT-----------DPETGKEL-----PRGD-IGMIEVKGPNV 357
Query: 860 HFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVST 919
F GY E K F+ D +F++GD+ +DE GY++ R D G NV
Sbjct: 358 -FKGYWRMPEKTKS----EFRD-DGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYP 411
Query: 920 MEVEATISKYLPYT-----EFTVYGVKVGDLD-GRAGMIAIV-DTSNQVDLKLLVQGLDA 972
E+E+ I E V GV D G +V D +D ++ GLD
Sbjct: 412 KEIESEI-----DAMPGVVESAVIGVP--HADFGEGVTAVVVRDKGATIDEAQVLHGLDG 464
Query: 973 NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L + P V + + K++K L
Sbjct: 465 QLAKFKMPKKVIFVDDLPRNTMGKVQKNVL 494
Score = 68.8 bits (169), Expect = 5e-12
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 136 RRPNAPCYYFQD-ETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGA 194
P+ + + ++ + ++A +L G + GD +A E E + ++L
Sbjct: 14 DDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLAT 73
Query: 195 AKLGVI 200
+ G +
Sbjct: 74 VRAGGV 79
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 171 bits (437), Expect = 1e-45
Identities = 91/449 (20%), Positives = 156/449 (34%), Gaps = 58/449 (12%)
Query: 492 NARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
NA D A V + + ++A L DG GD +A++ +N E + +
Sbjct: 15 NAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVK-LFLLD 607
A +G I +N L + + ++ Y + + S+ VK + +
Sbjct: 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLGGVKKAYAIG 134
Query: 608 ETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQ 667
+ DL TP S + +D + I+T+ G P+ A++ +L+
Sbjct: 135 DGSGPFAPFKDLASDTPFSAPEFGA----ADGFVIIHTAAVGGRPRGALISQGNLLIAQS 190
Query: 668 VGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKC 727
L DV LP++H GL + G + I KF + RD +K
Sbjct: 191 SLVDAWRLTEADVNLGMLPLFHVT-GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKV 249
Query: 728 NAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE 787
M +L + A + ++ + + +F T +G +E
Sbjct: 250 TVMAEFAPMLGNILDQ-AAPAQLAS--LRAVTGLDTPETIERFEATCPNATFWATFGQSE 306
Query: 788 GNANLVNMDNTE--GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQP 845
+ + + G P F VA++ D + P
Sbjct: 307 TSGLSTFAPYRDRPKSAG-----RPLFWRTVAVV-----------DAEDRPL------PP 344
Query: 846 GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905
G +GEI P+ F GY + + + F+ G + +GDM D GYL++ R
Sbjct: 345 GE-VGEIVLRGPT-VFKGYWNNAAATQH----AFRNG--WHHTGDMGRFDADGYLFYAGR 396
Query: 906 --------TGDTYRWKGENVSTMEVEATI 926
TG GENV EVE +
Sbjct: 397 APEKELIKTG------GENVYPAEVEGAL 419
Score = 81.4 bits (202), Expect = 4e-16
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
M+ + TL ++++ P+ + T + + ++A L DG GD +A
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 179 LMCENRPEYVGVWLGAAKLGVI 200
++ +N E + + A +G I
Sbjct: 61 ILSQNCSEMIELIGAVALIGAI 82
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 171 bits (435), Expect = 5e-45
Identities = 91/436 (20%), Positives = 157/436 (36%), Gaps = 61/436 (13%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
++ E S + A +L G ++GD +A++ PE+ V LG + G+I +K
Sbjct: 77 RELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKST 136
Query: 568 PLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPA 625
+++ + K+KAI+ E++ + P +++ LL +++ N L+ A
Sbjct: 137 DILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNE--A 194
Query: 626 SEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCL 685
S + ++ +TSGT+GLPK A + L ++ L + D+++
Sbjct: 195 STTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTI- 253
Query: 686 PMYHS----AGGLIGTI-PALILGSSIAI--RTKFSASNYFRDCAKYKCNAGIYIGEMC- 737
S ++ ++ LG+ + KF + + Y I M
Sbjct: 254 ----SDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYP------IKSMMG 303
Query: 738 -----RYLLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGN- 789
R LL S + H + + VG + + + + + I E YG TE
Sbjct: 304 APIVYRMLLQQDLSSYKFPH-LQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTETGL 361
Query: 790 --ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
M G +G + V II D K G
Sbjct: 362 TCMVSKTMKIKPGYMG-----TAASCYDVQII-----------DDKGN---VLPPGTEGD 402
Query: 848 IIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTG 907
I +K P F GY D + + ++L GD + DE GY F R
Sbjct: 403 IGIRVKPIRPIGIFSGYVDNPDKTAA----NIRGD--FWLLGDRGIKDEDGYFQFMGRAD 456
Query: 908 DTYRWKGENVSTMEVE 923
D G + EVE
Sbjct: 457 DIINSSGYRIGPSEVE 472
Score = 60.0 bits (146), Expect = 3e-09
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 136 RRPNAPCYYFQDE-----TWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVG 189
+RP +P ++ + W +++ E S + A +L G ++GD +A++ PE+
Sbjct: 55 KRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWL 114
Query: 190 VWLGAAKLGVI 200
V LG + G+I
Sbjct: 115 VILGCIRAGLI 125
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 163 bits (414), Expect = 1e-42
Identities = 102/446 (22%), Positives = 171/446 (38%), Gaps = 77/446 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A ++ + ++A L G ++GDV+ L + PE+V +LGA+ G I N
Sbjct: 53 ADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAE 112
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L ++K +I A YY +++ VK+ +D + S+L +
Sbjct: 113 LAKHAKASRAKLLITQACYYEKVKDFARESD-VKVMCVDSAPDGCLHFSELTQADENE-- 169
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGSGDVIY 682
P + D + Y+SGTTGLPK ++ + V L S DVI
Sbjct: 170 APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITS--VAQQVDGDNPNLYFHSEDVIL 227
Query: 683 NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-----IYIGEMC 737
LPM+H + L +G+ I I KF + KYK + + + +
Sbjct: 228 CVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS-IA 286
Query: 738 RYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE----GNA 790
+ K D S ++MI G + ++ +F + + YG TE
Sbjct: 287 KSPDLDKH---DLSS--LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAM 341
Query: 791 NLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPG 846
L GA G T++ E + I DP+TG + NQP
Sbjct: 342 CLAFAKEPFDIKPGACG---TVVRN------------AEMK-IVDPETGASL--PRNQP- 382
Query: 847 MIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
GEI K GY + E+ + ++ + + +GD+ +D+
Sbjct: 383 ---GEICIRGDQIMK---------GYLNDPEATSRTIDK-----EGWLHTGDIGYIDDDD 425
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEA 924
L+ DR + ++KG V+ E+EA
Sbjct: 426 ELFIVDRLKELIKYKGFQVAPAELEA 451
Score = 71.0 bits (175), Expect = 1e-12
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYY--FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179
N L S +++ + PC + +T ++ + ++A L G ++GDV+ L
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIML 79
Query: 180 MCENRPEYVGVWLGAAKLGVI 200
+ PE+V +LGA+ G I
Sbjct: 80 FLPSSPEFVLAFLGASHRGAI 100
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 161 bits (409), Expect = 4e-42
Identities = 110/535 (20%), Positives = 177/535 (33%), Gaps = 78/535 (14%)
Query: 490 ASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
+ + D A A++ + A +A+ E
Sbjct: 30 PAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPAMETGVA 84
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
+ A GV + +N + L H +S ++ PD
Sbjct: 85 VVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAP--------------PDA----- 125
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666
E P L L + A P + D L +YTSGTTG PK A++P +
Sbjct: 126 -ELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTL 184
Query: 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
DV+ LP++H G ++G + L G S+ +FS R+
Sbjct: 185 DALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAARELND-- 242
Query: 727 CNAGIYIG------EMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQ 777
A + G + L A E + +++ G + +
Sbjct: 243 -GATMLFGVPTMYHRIAETLPADPELAKALAG--ARLLVSGSAALPVHDHERIAAATGR- 298
Query: 778 TIIEFYGATEGNANLVNMDNTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKT 834
+IE YG TE N + E G VG+ P+ ++ LV +
Sbjct: 299 RVIERYGMTETLMNTSVRADGEPRAGTVGV----------PLPGVELRLV------EEDG 342
Query: 835 GLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVM 894
G I +++ P+ F Y ++ ++ F D +F +GDM V
Sbjct: 343 TPIAALDGESVGEI--QVRG--PNL-FTEYLNRPDATAA----AFTE-DGFFRTGDMAVR 392
Query: 895 DELGYLYFKDRTG-DTYRWKGENVSTMEVEATISKYLPY-TEFTVYGVKVGDLDGRAGMI 952
D GY+ R D + G + E+E + + P E V G DL G +
Sbjct: 393 DPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLE-HPEVREAAVTGEPDPDL-GERIVA 450
Query: 953 AIV--DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
IV D + L L + A L + RP VR + A+ KI K L +
Sbjct: 451 WIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505
Score = 60.7 bits (148), Expect = 2e-09
Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 118 RMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL 177
R + ++ + + P F + + T ++ + A +
Sbjct: 17 RGSHMSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRV 71
Query: 178 ALMCENRPEYVGVWLGAAKLGVI 200
A+ E + A GV
Sbjct: 72 AVWATPAMETGVAVVAALLAGVA 94
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 158 bits (402), Expect = 3e-41
Identities = 80/425 (18%), Positives = 144/425 (33%), Gaps = 49/425 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ +A L DG + +A++ N + V L +LG + AL+N LK
Sbjct: 33 AELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLKSAE 92
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L I + A +++ +AI +S ++ L + D S
Sbjct: 93 LAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLVRDGEPYS-------YGPP 144
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGKHL-LSLGSGDVIYNCLP 686
+ + YTSGTTGLPKAAI+P + + L G +V+ +P
Sbjct: 145 IEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMP 204
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA--G---IYIGEMCRYLL 741
+YH G + AL L + + +F + + + + + +
Sbjct: 205 LYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDA-LAAAAA 263
Query: 742 ASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNT 798
+ ++ + M + + + YG TE +L
Sbjct: 264 HAGS-SLKLDS--LRHVTFAGATMPDAVLETVHQHLPG-EKVNIYGTTEAMNSLYMRQPK 319
Query: 799 EGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS 858
G P F V I+ G+ G GE+ +
Sbjct: 320 TGTEM-----APGFFSEVRIV-----------RIGGGVDEIVA---NGE-EGELIVAASD 359
Query: 859 RHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVS 918
F GY ++ ++ + L+ D ++ + D+ V G + R D GEN+
Sbjct: 360 SAFVGYLNQPQATAEKLQ------DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIH 413
Query: 919 TMEVE 923
E+E
Sbjct: 414 PSEIE 418
Score = 70.3 bits (173), Expect = 1e-12
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 124 TTLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
T+ +++ R P+ + T ++ +A L DG + +A++
Sbjct: 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVA 61
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N + V L +LG +
Sbjct: 62 PNSADVVIAILALHRLGAV 80
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 158 bits (402), Expect = 7e-41
Identities = 90/450 (20%), Positives = 172/450 (38%), Gaps = 81/450 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S + + LQ+ G +AL EN E+ + +GV A N +
Sbjct: 56 AEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRE 115
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP---NLSDLMKTTPA 625
LVHS+ K + S ++ +++++ +K ++ ++K D L +K
Sbjct: 116 LVHSLGISKPTIVFSSKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTP 175
Query: 626 SEVKPSE----PLQTSDSLLYI-YTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLS 674
+ S + + + I +SG+TGLPK I+ F G
Sbjct: 176 PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQ--- 232
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG---- 730
+ G + +P +H G+ T+ LI G + + TKF + + YKC +
Sbjct: 233 VSPGTAVLTVVPFHHGF-GMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVP 291
Query: 731 -IYIGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGAT 786
++ + + L +K D S+ + I G + ++ +RF++ + + YG T
Sbjct: 292 TLFAI-LNKSELLNKY---DLSN--LVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLT 345
Query: 787 E----GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842
E D+ GA G ++P + + + D T +
Sbjct: 346 ETTSAIIITPEG-DDKPGASG---KVVPL------------FKAK-VIDLDTKKSL--GP 386
Query: 843 NQPGMIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVM 894
N+ GE+ K GY + E+ K++++ + + +GD+
Sbjct: 387 NRR----GEVCVKGPMLMK---------GYVNNPEATKELID-----EEGWLHTGDIGYY 428
Query: 895 DELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
DE + + DR ++KG V E+E+
Sbjct: 429 DEEKHFFIVDRLKSLIKYKGYQVPPAELES 458
Score = 69.2 bits (170), Expect = 4e-12
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 4/82 (4%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKGDVLA 178
+ ++ +K ++R F + ++ + E S + + LQ+ G +A
Sbjct: 22 EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 179 LMCENRPEYVGVWLGAAKLGVI 200
L EN E+ + +GV
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVG 103
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 156 bits (397), Expect = 3e-40
Identities = 90/450 (20%), Positives = 165/450 (36%), Gaps = 81/450 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 54 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 113
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIP-DVKLFLLDETKPDLP------NLSDLMK 621
L++S++ + + VS +I +++ +P K+ ++D ++ +
Sbjct: 114 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 173
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLS 674
E ++ I +SG+TGLPK F G
Sbjct: 174 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQ--- 230
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG---- 730
+ I + +P +H G+ T+ LI G + + +F + R YK +
Sbjct: 231 IIPDTAILSVVPFHHGF-GMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVP 289
Query: 731 -IYIGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGAT 786
++ + L K D S+ + I G + ++ KRFH+ I + YG T
Sbjct: 290 TLFSF-FAKSTLIDKY---DLSN--LHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLT 343
Query: 787 E----GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKY 842
E D+ GAVG ++P E + + D TG +
Sbjct: 344 ETTSAILITPEG-DDKPGAVG---KVVPF------------FEAK-VVDLDTGKTL--GV 384
Query: 843 NQPGMIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVM 894
NQ GE+ GY + E+ +++ D + SGD+
Sbjct: 385 NQR----GELCVRGPMIMS---------GYVNNPEATNALIDK-----DGWLHSGDIAYW 426
Query: 895 DELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
DE + + DR ++KG V+ E+E+
Sbjct: 427 DEDEHFFIVDRLKSLIKYKGYQVAPAELES 456
Score = 66.1 bits (162), Expect = 4e-11
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 123 NTTLVSEFKKSVKR---RPNAPCY--YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL 177
+ T + K++KR P + + T + E S ++A ++ G +
Sbjct: 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 78
Query: 178 ALMCENRPEYVGVWLGAAKLGVI 200
+ EN ++ LGA +GV
Sbjct: 79 VVCSENSLQFFMPVLGALFIGVA 101
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural genomics;
2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 155 bits (394), Expect = 6e-40
Identities = 101/531 (19%), Positives = 207/531 (38%), Gaps = 81/531 (15%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+I E + K+A + G +KG+ + + N +YV ++ IN K
Sbjct: 56 LEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFE 115
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
L H ++ ++ ++V ++ Y + + E ++F++ ++ +LS++M + +
Sbjct: 116 LEHILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVG---GEVNSLSEVMDSGSE-DF 171
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
+ + D L YT GTTG+PK ++ +F + L D I C+PM+
Sbjct: 172 ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMF 231
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-----IYIGEMCRYLLAS 743
HSA + +G+ + F+ + KYK L+ +
Sbjct: 232 HSA-EFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNV-----LVNT 285
Query: 744 KE---SEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQ------TIIEFYGATE---- 787
E D+S+ +K+ G + + K +K + + +G TE
Sbjct: 286 LESSNKTYDWSY--LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPM 343
Query: 788 GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGM 847
N + G+ + +E + + + G + + G
Sbjct: 344 VTTNPPLRLDKSTTQGV---PMSD------------IELK-VISLEDGREL--GVGESGE 385
Query: 848 IIGEIK--QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905
I+ I+ F GY +++ ++ K G K+F +GD+ +DE G+L+F+DR
Sbjct: 386 IV--IRGPNI-----FKGYWKREKENQECWWYDEK-GRKFFRTGDVGFIDEEGFLHFQDR 437
Query: 906 TGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG---MIAIV-- 955
+ ++KG ++ E+EA + + V G D AG IV
Sbjct: 438 VKEVIKYKGYTIAPFELEALL-----MKHEAVMDVAVIGKP----DEEAGEVPKAFIVLK 488
Query: 956 -DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
+ +VD + +++ + + Y R V ++ + T + K+ + L+ +
Sbjct: 489 PEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREK 539
Score = 71.5 bits (176), Expect = 8e-13
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 8/86 (9%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQD--------ETWTIKQIDEYSNKIARILQDDGFKKG 174
+L + ++ + E+ +I E + K+A + G +KG
Sbjct: 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKG 77
Query: 175 DVLALMCENRPEYVGVWLGAAKLGVI 200
+ + + N +YV ++
Sbjct: 78 EHVGVCIPNSIDYVMTIYALWRVAAT 103
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 150 bits (382), Expect = 2e-38
Identities = 91/528 (17%), Positives = 179/528 (33%), Gaps = 86/528 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D S +A L + G KGD + N E+ V+ K GV+ + ++
Sbjct: 59 IELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYE 118
Query: 569 LVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
L I ++ K +I S I+++ + ++ L+ + L D ++ T
Sbjct: 119 LNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQATDFGLLDWIE-T 177
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
PA + + + G+TG PK + + + L S +
Sbjct: 178 PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLC 237
Query: 684 CLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA-----GIYIGEMC 737
LP H+ G + L G + + N F +++ N I
Sbjct: 238 ALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMW-- 295
Query: 738 RYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796
L + + + +++++ G + + + + + + +G EG N +D
Sbjct: 296 --LEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC-KLQQVFGMAEGLVNYTRLD 352
Query: 797 NTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG---------LCIRCKYN 843
+++ G + E + I D + L R
Sbjct: 353 DSDEQIFTTQG-------RPISSD-------DEIK-IVDEQYREVPEGEIGMLATR---- 393
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
G P F GY E + VF D Y+ SGD++ G L
Sbjct: 394 --G----------PY-TFCGYYQSPEHNSQ----VFDE-DNYYYSGDLVQRTPDGNLRVV 435
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG---MIAIV 955
R D GE +++ E+E I + + D + G IV
Sbjct: 436 GRIKDQINRGGEKIASEEIEKLI-----LLHPEVMHAALVAIV----DEQFGEKSCAFIV 486
Query: 956 DTSNQVDLKLLVQGL-DANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ ++ +L + L + + Y P +++++++ +T K+ K QL
Sbjct: 487 SRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQL 534
Score = 69.9 bits (172), Expect = 2e-12
Identities = 17/79 (21%), Positives = 31/79 (39%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ L V+ P++ + + ++D S +A L + G KGD +
Sbjct: 28 IDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQL 87
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ V+ K GV+
Sbjct: 88 PNVAEFYIVFFALLKAGVV 106
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 150 bits (381), Expect = 3e-38
Identities = 96/518 (18%), Positives = 175/518 (33%), Gaps = 70/518 (13%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++D ++++A Q G ++ D + + N E+ V +LG + + +
Sbjct: 54 RELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSE 113
Query: 569 LVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKT- 622
+ + ++ A I+ Y ++ +P +K ++ + L DL
Sbjct: 114 ITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEP 173
Query: 623 TPASEVKPSEP--LQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
EVK S+ LQ + G+TGL K + + + + L V
Sbjct: 174 VKLPEVKSSDVAFLQ--------LSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTV 225
Query: 681 IYNCLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA-----GIYIG 734
LPM H+ G + L G + + S + F + K + +
Sbjct: 226 YLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMV 285
Query: 735 EMCRYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLV 793
+ A+ D S QV+++ G + + F T+ + +G EG LV
Sbjct: 286 W----MDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFGMAEG---LV 337
Query: 794 NMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
N + II + P E++ + D +PG G +
Sbjct: 338 NYTRLDDPEEIIVNTQGKPMSP-------YDESR-VWDDHDRDV------KPG-ETGHLL 382
Query: 854 QSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWK 913
P GY +E F D ++ +GD++ + GY+ + R D
Sbjct: 383 TRGPY-TIRGYYKAEEHNAA----SFTE-DGFYRTGDIVRLTRDGYIVVEGRAKDQINRG 436
Query: 914 GENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG---MIAIVDTSNQVDLKL 965
GE V+ EVE + + + + D G + I+
Sbjct: 437 GEKVAAEEVENHL-----LAHPAVHDAAMVSMP----DQFLGERSCVFIIPRDEAPKAAE 487
Query: 966 LVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L L L AY P V +++ TG K+ K L
Sbjct: 488 LKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKAL 525
Score = 69.1 bits (170), Expect = 4e-12
Identities = 12/79 (15%), Positives = 31/79 (39%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
T + + + + W+ +++D ++++A Q G ++ D + +
Sbjct: 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ V +LG +
Sbjct: 83 PNIKEFFEVIFALFRLGAL 101
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 147 bits (373), Expect = 2e-37
Identities = 86/521 (16%), Positives = 161/521 (30%), Gaps = 78/521 (14%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ ++ +A+ L + + L +N + + + + A+INT L
Sbjct: 30 QNLYCEASLLAKRL---KAYQQSRVGLYIDNSIQSIILIHACWLANIEIAMINTRLTPNE 86
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIR--ESIPDVKLFLLDETKPDLPNLSDLMKT---- 622
+ + + ++ + I + I + I + D +
Sbjct: 87 MTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEFAGRDITTNGLLDNTMGIQYDTSNETV 146
Query: 623 --TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDV 680
+ + D ++TSGTTG KA K L
Sbjct: 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTN 206
Query: 681 IYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG--EMCR 738
+ LP+YH GL + A+I G ++ I KF+A + +
Sbjct: 207 WLSVLPIYHI-SGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERIT--HISLVPQTLN 263
Query: 739 YLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATE--GNANLVNMD 796
+L+ Y+ Q + + G + + ++ I +G TE +
Sbjct: 264 WLMQQGL-HEPYNLQKILLGGAKLSATMIETALQYNL--PIYNSFGMTETCSQFLTATPE 320
Query: 797 NTE---GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIK 853
VG +P+ V I +P G ++ IK
Sbjct: 321 MLHARPDTVG-----MPSANVDVKIK-----------NPNKE--------GHGELM--IK 354
Query: 854 QSDPSRH-FYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRW 912
+ GY + F+ G YF +GD+ +D GY+ DR D
Sbjct: 355 ----GANVMNGYLYPTDLTG-----TFENG--YFNTGDIAEIDHEGYVMIYDRRKDLIIS 403
Query: 913 KGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAGMI--AIVDTSNQVDLKL 965
GEN+ ++E + G D G + + + +
Sbjct: 404 GGENIYPYQIETVA-----KQFPGISDAVCVGHP----DDTWGQVPKLYFVSESDISKAQ 454
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEG 1006
L+ L +L Y P + + T T K+++ +L EG
Sbjct: 455 LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREG 495
Score = 70.7 bits (174), Expect = 1e-12
Identities = 8/76 (10%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
+L K ++ + E++T + + ++ +A+ L + + L +N
Sbjct: 2 SLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDNS 58
Query: 185 PEYVGVWLGAAKLGVI 200
+ + + +
Sbjct: 59 IQSIILIHACWLANIE 74
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 146 bits (372), Expect = 2e-37
Identities = 70/285 (24%), Positives = 122/285 (42%), Gaps = 18/285 (6%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
AQ++ +N+ A +L G KGD +AL+ N E+ ++ GAAKLG ++ INT L
Sbjct: 47 AQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLAAPE 106
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ +S SK +I A P I+AIR +L++ +++ A E
Sbjct: 107 VSFILSDSGSKVVIYGAPSAPVIDAIRAQADPPGTVT---DWIGADSLAERLRSAAADE- 162
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYNCLPMY 688
P+ D+L +YTSGTTG PK + + V + + D + LPM+
Sbjct: 163 -PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMF 221
Query: 689 HSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIG--EMCRYLLASKE- 745
H A L I + + G ++ +F A+ + + + I + ++ E
Sbjct: 222 HVA-ALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVC--IGGAVPAILNFMRQVPEF 278
Query: 746 SEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE 787
+E D + G M + K +++ +++ Y TE
Sbjct: 279 AELDAPD--FRYFITGGAPMPEAL-IKIYAAKNIE-VVQGYALTE 319
Score = 73.7 bits (182), Expect = 1e-13
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 124 TTLVSEFKKSVKRRPNAPC--YYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ ++ P D T Q++ +N+ A +L G KGD +AL+
Sbjct: 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLM 75
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ ++ GAAKLG +
Sbjct: 76 PNSVEFCCLFYGAAKLGAV 94
Score = 46.8 bits (112), Expect = 3e-05
Identities = 39/125 (31%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 886 FLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGV 940
F +GD+ +D+ GYLY KDR D GENV E+E+ I E V G+
Sbjct: 392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVI-----IGVPGVSEVAVIGL 446
Query: 941 KVGDLD---GRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKI 997
D G +V N+V + +V+ L Y P V +AI T KI
Sbjct: 447 P----DEKWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKI 502
Query: 998 KKIQL 1002
K L
Sbjct: 503 LKTVL 507
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 147 bits (373), Expect = 6e-37
Identities = 84/527 (15%), Positives = 170/527 (32%), Gaps = 85/527 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++++ ++ +A L+ G K G+ + N E + KLGV L + ++
Sbjct: 54 RELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQRSE 113
Query: 569 LVHSISTVKSKAIIVSAL-----YYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
L S ++ +I + +++ L NL D +
Sbjct: 114 LNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLND-SGEHNLQDAINH- 171
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLLSLGSGDVIYN 683
+E + P + + + GTTG PK + + +
Sbjct: 172 -PAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLC 230
Query: 684 CLPMYHSAG-GLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNA-----GIYIGEMC 737
+P H+ G++ + G ++ + SA+ F K++ N +
Sbjct: 231 AIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290
Query: 738 RYLLASKESEADYSH-QVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMD 796
L ES A + +++++ G + + A+ Q + + +G EG N +D
Sbjct: 291 --ALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQ-LQQVFGMAEGLVNYTRLD 347
Query: 797 NTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPK--------TG-LCIRCKYN 843
++ G P E + D + G L R
Sbjct: 348 DSAEKIIHTQG-----YPMCPD---------DEVW-VADAEGNPLPQGEVGRLMTR---- 388
Query: 844 QPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFK 903
G P F GY + F + ++ SGD++ +D GY+ +
Sbjct: 389 --G----------PY-TFRGYYKSPQHNAS----AFDA-NGFYCSGDLISIDPEGYITVQ 430
Query: 904 DRTGDTYRWKGENVSTMEVEATISKYLPYT-----EFTVYGVKVGDLDGRAG--MIAIVD 956
R D GE ++ E+E + + ++ D G A +
Sbjct: 431 GREKDQINRGGEKIAAEEIENLL-----LRHPAVIYAALVSME----DELMGEKSCAYLV 481
Query: 957 TSNQVDLKLLVQGLDA-NLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
+ + + L + + P V + ++ +T K+ K QL
Sbjct: 482 VKEPLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQL 528
Score = 65.7 bits (161), Expect = 5e-11
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 136 RRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAA 195
++ + + +++++ ++ +A L+ G K G+ + N E +
Sbjct: 37 AASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALL 96
Query: 196 KLGVI 200
KLGV
Sbjct: 97 KLGVA 101
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 146 bits (371), Expect = 8e-37
Identities = 92/450 (20%), Positives = 167/450 (37%), Gaps = 83/450 (18%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ YS+K A G KGD + L ++R ++ LG KLG I+ LK +
Sbjct: 90 KDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRD 149
Query: 569 LVHSISTVKSKAIIVSA--LYYPEIEAIRESIPDVKLFLL---DETKPDLPNLSDLMKTT 623
+V+ I K I+ A +++ D+ L + + ++ +
Sbjct: 150 IVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECGDIPLKKAKVGGDVLEGWIDFRKELEES 209
Query: 624 PASEVKPSEPLQTS--DSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV-GKHLLSLGSGDV 680
+P+ + T D L ++SGT G PK + LG + K+ ++ +
Sbjct: 210 SPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEH-DNTYPLGHILTAKYWQNVEDDGL 268
Query: 681 IYNCLPMYHS----AGGLIGTI-PALILGSSIAI--RTKFSASNYFRDCAKYKCNAGIYI 733
Y + + G + I G ++ + +F A N +KY
Sbjct: 269 HYTV-----ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT---- 319
Query: 734 GEMC------RYLLASKESEADYSHQVVKMIGVGMRG-----DIWAKFVKRFHVQTIIEF 782
C R+L+ S ++S +K V G +++ +F++ + ++E
Sbjct: 320 --FCAPPTIYRFLIKEDLSHYNFST--LKYAVVA--GEPLNPEVFNRFLEFTGI-KLMEG 372
Query: 783 YGATEGN---ANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCI 838
+G TE A M+ G++G PT + + ++ D + + + G + I
Sbjct: 373 FGQTETVVTIATFPWMEPKPGSIG-----KPTPGYKIELM--D-RDGRLCEVGEEGEIVI 424
Query: 839 RCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
+P + F Y E ++ + G Y+ +GDM MDE G
Sbjct: 425 NTMEGKPVGL------------FVHYGKDPERTEE----TWHDG--YYHTGDMAWMDEDG 466
Query: 899 YLYFKDRTGDT-----YRWKGENVSTMEVE 923
YL+F R D Y+ V EVE
Sbjct: 467 YLWFVGRADDIIKTSGYK-----VGPFEVE 491
Score = 59.1 bits (144), Expect = 5e-09
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 134 VKRRPNAPCYYFQDE-----TWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYV 188
+ P + D+ +T K + YS+K A G KGD + L ++R ++
Sbjct: 66 ARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125
Query: 189 GVWLGAAKLGVI 200
LG KLG I
Sbjct: 126 YCMLGLHKLGAI 137
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 149 bits (379), Expect = 8e-37
Identities = 101/451 (22%), Positives = 172/451 (38%), Gaps = 79/451 (17%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+ + S +IA G + DV+ L+ N PE+V +L A+ G + N
Sbjct: 92 SDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAE 151
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP----NLSDLMKT-T 623
+ +K II A Y +I+ ++ V + + D +P ++L ++ T
Sbjct: 152 IAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTT 211
Query: 624 PASEVKPSEPLQTSDSLLYIYTSGTTGLPKAA------IMPNFKVLLGGQVGKHLLSLGS 677
ASEV S + D + Y+SGTTGLPK ++ + V L S
Sbjct: 212 EASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTS--VAQQVDGENPNLYFHS 269
Query: 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG-----IY 732
DVI LPM+H + L +G++I I KF + + K I
Sbjct: 270 DDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIV 329
Query: 733 IGEMCRYLLASKESEADYSHQVVKMIGVG---MRGDIWAKFVKRFHVQTIIEFYGATE-- 787
+ + + K D S ++++ G + ++ +F + + YG TE
Sbjct: 330 LA-IAKSSETEKY---DLSS--IRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAG 383
Query: 788 --GNANLVNMDNTE----GAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841
+L GA G T++ E + I DP TG +
Sbjct: 384 PVLAMSLGFAKEPFPVKSGACG---TVVRN------------AEMK-IVDPDTGDSL--S 425
Query: 842 YNQPGMIIGEI--------KQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMV 893
NQP GEI K GY + + + ++ D + +GD+ +
Sbjct: 426 RNQP----GEICIRGHQIMK---------GYLNNPAATAETIDK-----DGWLHTGDIGL 467
Query: 894 MDELGYLYFKDRTGDTYRWKGENVSTMEVEA 924
+D+ L+ DR + ++KG V+ E+EA
Sbjct: 468 IDDDDELFIVDRLKELIKYKGFQVAPAELEA 498
Score = 67.7 bits (166), Expect = 2e-11
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYY--FQDETWTIKQIDEYSNKIARILQDDGFKKGDVLAL 179
+ +L +++ PC +T + S +IA G + DV+ L
Sbjct: 59 NHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVML 118
Query: 180 MCENRPEYVGVWLGAAKLGVI 200
+ N PE+V +L A+ G
Sbjct: 119 LLPNCPEFVLSFLAASFRGAT 139
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal
nuclease OB fold, tudor domain, cytoplasm, HOST-virus
interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Length = 570
Score = 99 bits (248), Expect = 9e-22
Identities = 30/165 (18%), Positives = 55/165 (33%), Gaps = 12/165 (7%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+L KL + + D++ G C+A+ D Y R +V + +
Sbjct: 387 TQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWY-RARVEKVESPAKIHVFY 445
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGV-WSQAAYDFLDDFT-- 344
+DY +++ +P L + LP QA E A ++ + A D +
Sbjct: 446 IDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQN 505
Query: 345 -RLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLA 388
+ V + V L D + ++ LV L
Sbjct: 506 TQCLLNVEHLS-------AGCPHVTLQFADSKGDVGLGLVKEGLV 543
Score = 32.9 bits (74), Expect = 0.60
Identities = 27/168 (16%), Positives = 50/168 (29%), Gaps = 5/168 (2%)
Query: 309 LISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVE 368
L++ + L G+ +S+ A F + + R V V++ + G
Sbjct: 236 LLAGIECPRGARNLPGLVQEGEPFSEEATLFTKE--LVLQREVEVEVESMDKAGNFIGWL 293
Query: 369 LFDLDEELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDL 428
D N++ LV L+K A +E K + EE +
Sbjct: 294 HID---GANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEE 350
Query: 429 PDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQ 476
E+ A E D + + E + +L +
Sbjct: 351 VMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN 398
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain,
proteolytic fragment, PSI, structural genomics; 1.42A
{Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A*
3omg_A* 2o4x_A 2e6n_A 2o4x_B
Length = 246
Score = 89.7 bits (222), Expect = 6e-20
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 6/163 (3%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+ KL + + D++ G C+A+ D Y R +V + +
Sbjct: 41 TQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWY-RARVEKVESPAKIHVFY 99
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVE-PLEGVWSQAAYDFLDDFTRL 346
+DY +++ +P L + LP QA E A ++ P + A D + +
Sbjct: 100 IDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQN 159
Query: 347 FARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAK 389
+++V E V L D + ++ LV L
Sbjct: 160 TQCLLNV----EHLSAGCPHVTLQFADSKGDVGLGLVKEGLVM 198
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation,
transcription; 1.80A {Drosophila melanogaster} PDB:
3nth_A* 3nti_A*
Length = 169
Score = 82.3 bits (203), Expect = 3e-18
Identities = 25/170 (14%), Positives = 53/170 (31%), Gaps = 25/170 (14%)
Query: 218 VHFKGIILELHRLMK-LNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTD 276
V + + L ++ L + G LC+A+ + + R Q+
Sbjct: 19 VQMESDVPALEQMTDKLLDA-------EQDLPAFSDLKEGALCVAQFPEDEVFYRAQIRK 71
Query: 277 TSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAA 336
D + F+D+ + + P+ ++ + C L + A
Sbjct: 72 VLDDGKCEVHFIDFGNNAVTQ--QFRQL--PEELAKPARYSRHCELDASTISK--CDAAL 125
Query: 337 YDFLDDFT---RLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELV 383
D +++ K G + V LF + NI+++L
Sbjct: 126 LQSFIDTRFSETFQVEILATKGTG------THVVRLF--YQSKNISEKLQ 167
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.34.9.1
Length = 110
Score = 77.6 bits (191), Expect = 3e-17
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 226 ELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMI 285
+L KL E+ + H G + A + R +V T ++ +
Sbjct: 8 RSLQLDKLVNEMTQHYENSVPE--DLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDL 65
Query: 286 LFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEG 330
FVD+ D + P +DL + +S LPFQAIEC LA +
Sbjct: 66 YFVDFGDNGDCPLKDLRALR-SDFLS-LPFQAIECSLARIASGPS 108
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain,
tudor P100, SND1, methylated arginine, SDMA, splicing;
2.10A {Drosophila melanogaster}
Length = 218
Score = 79.0 bits (194), Expect = 2e-16
Identities = 38/205 (18%), Positives = 71/205 (34%), Gaps = 12/205 (5%)
Query: 223 IILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSEL 282
+ +L L ++ D G L A+ + + R +V S
Sbjct: 22 SVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQGSN- 80
Query: 283 AMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVE-PLEGVWSQAAYDFLD 341
A +L++DY +K+ +P L + S+ A E LA V P + + A
Sbjct: 81 ATVLYIDYGNKETLPTNRLAALPPA--FSSEKPYATEYALALVALPTDNEDKEEALRAFS 138
Query: 342 DFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSEDANVCLSED 401
+ V + + + TG L D +++ K+LVA L + L E
Sbjct: 139 EDV--LNHKVQLNVELKVTGS-PNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKE- 194
Query: 402 DATIFKEIEKLMQSSESEDGEEVWE 426
+ + + Q + +W+
Sbjct: 195 ---LVDQYKAA-QEAARVAHLAIWK 215
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 82.6 bits (203), Expect = 4e-16
Identities = 107/668 (16%), Positives = 204/668 (30%), Gaps = 218/668 (32%)
Query: 60 HLDQD--EMNDC--TLVGIVNPSLFFLRLNQFQDIRVYIILLTLPRDVNIIYSLSRAILG 115
H+D + E ++ + + F+ +D++ + +++ I A+ G
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 116 TKRMAATNTTLVSEFKKSVKR------RPNAPCYYFQDETWTIKQID------EYSNKIA 163
T R+ TL+S+ ++ V++ R N Y F +Q Y +
Sbjct: 64 TLRLF---WTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 164 RILQDDG--FKKGDV------LAL---MCENRPE-YVGV---------WLGAAKL---GV 199
R L +D F K +V L L + E RP V + W+ V
Sbjct: 118 R-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 200 ISKLSN-VVWLAQLLGKKMVHFKGIILE----LHRLMKLNKEIGVDVSKT---------- 244
K+ + WL L + +LE L + N D S
Sbjct: 177 QCKMDFKIFWLN--LKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 245 -SSRYSKEQCHP-GLLCLARSDD---KSGYN------RVQVTDTSDSELAMILFVDYSDK 293
R K + + LL L + +N ++ +T T ++ F+ +
Sbjct: 233 ELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLT-TRFKQVT--DFLSAATT 286
Query: 294 QEIPYEDLV-PIHRPQL-----------ISNLPFQAIECYLAGVEPL----------EGV 331
I + + ++ +LP + + P +G+
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL-----TTNPRRLSIIAESIRDGL 341
Query: 332 --WSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAK 389
W + D T + ++V L E R+ FD L+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNV-LEPAEY--RKM----FD--------------RLSV 380
Query: 390 FSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVIEKQA--------- 440
F A++ + + D V L S ++EKQ
Sbjct: 381 FPPSAHI--PT------ILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIPS 430
Query: 441 INFD---QQDEEY-----VIDEAALLDEEEMTEFVRQLQ------------SKIEQLEVD 480
I + + + EY ++D + + + + IE E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 481 VTYS------RFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDGFKKGDVLA 534
+ RF ++ ST A+ ++ N Q+ Y I
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---------------- 534
Query: 535 LMCENRPEYVGVWLGAAKLGVISALINTNLKK--QPLVHSISTVKSKAIIVSALYYPE-- 590
C+N P+Y +++A+++ L K + L+ S K ++ AL +
Sbjct: 535 --CDNDPKYE---------RLVNAILD-FLPKIEENLICS----KYTDLLRIALMAEDEA 578
Query: 591 --IEAIRE 596
EA ++
Sbjct: 579 IFEEAHKQ 586
Score = 62.9 bits (152), Expect = 6e-10
Identities = 112/786 (14%), Positives = 219/786 (27%), Gaps = 259/786 (32%)
Query: 288 VDY-SDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFL----DD 342
+D+ + + + Y+D++ + + N + ++ + + + S+ D + D
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ------DMPKSILSKEEIDHIIMSKDA 60
Query: 343 FTRLFARVVSVKLHGEETGGRRYAVELFDLDEELNINKELVALDLAKFSEDANVCLSEDD 402
+ ++ EE V+ F ++E L IN + + +
Sbjct: 61 VSGTLRLFWTLLSKQEEM------VQKF-VEEVLRINYKFLMSPIKTEQRQ-----PSMM 108
Query: 403 ATIFKE-IEKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDE------- 454
++ E ++L ++ V + +QA+ + + + V+ +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSR--LQPYLKL--RQAL-LELRPAKNVLIDGVLGSGK 163
Query: 455 -----AALLDEEEMTEF--------VRQLQSKIEQLEVDVT-YSRFKQEASNARSTNDAA 500
L + + ++ S LE+ + N S +D +
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHS 220
Query: 501 ATTVKNLEAQIDEYSNKIARILQDDGFKKG-DVLALMCENRPEYVGVWLGAAKLGVISAL 559
N++ +I ++ R+L+ ++ VL V +A
Sbjct: 221 ----SNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQ----NAKAWNAF 262
Query: 560 INTNLKKQPLVHSISTVKSKAII--VSALYYPEIEAIRESI---PD--VKLFL--LDETK 610
NL + L+ T + K + +SA I S+ PD L L LD
Sbjct: 263 ---NLSCKILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 611 PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGK 670
DLP EV + P + S++ A + + K
Sbjct: 316 QDLP-----------REVLTTNPRRL--SII------------AESIRDGLATW--DNWK 348
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAG 730
H NC + I+ SS+ + F + + +A
Sbjct: 349 H----------VNCDKLTT------------IIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 731 IYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNA 790
I + +S+ + K K
Sbjct: 387 IPTILLSLIWFDVIKSDVM---------------VVVNKLHKY----------------- 414
Query: 791 NLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIG 850
+LV E + I I +L + YN P
Sbjct: 415 SLVEKQPKESTISI---------PS---IYLELKVKLENEYALHRSIVD-HYNIP----- 456
Query: 851 EIKQSDPS--------RHFY---GY-ADKKESQKKILENVFKPGDKYFLSGDMMVMDELG 898
K D ++FY G+ E +++ F+ FL
Sbjct: 457 --KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL--FR---MVFLD--------FR 501
Query: 899 YLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTS 958
+L K R D+ W S + + Y PY I D
Sbjct: 502 FLEQKIRH-DSTAWNASG-SILNTLQQLKFYKPY---------------------ICD-- 536
Query: 959 NQVDLKLLVQGLDANLPAYARPL----FVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISD 1014
N + LV + LP L + ++ +I L E I +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLL------------RIALMAED---EAIFE 581
Query: 1015 DLYVRQ 1020
+ + +Q
Sbjct: 582 EAH-KQ 586
Score = 52.5 bits (125), Expect = 8e-07
Identities = 49/265 (18%), Positives = 88/265 (33%), Gaps = 59/265 (22%)
Query: 9 LLEDGVDREIRWLVYNVDHLDQ------EENEDSSSEDEFDRVPVLASSELPIPK----- 57
+ DG+ W N D L E + FDR+ V S IP
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSL 394
Query: 58 -WAHLDQDEMNDCTLVGIVNPSLFFLRLNQFQDIRVYIILLTLPRDVNIIYSLSRAILGT 116
W + + ++ + + SL + + I + I L L + Y+L R+I+
Sbjct: 395 IWFDVIKSDVMV-VVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 117 KRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQID--EYSNKIARILQDDGF--K 172
+ F P Y++ +K I+ E + D F +
Sbjct: 453 YN-------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 173 K-----------GDVLAL----------MCENRPEY---VGVWL----GAAKLGVISKLS 204
K G +L +C+N P+Y V L + + SK +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 205 NVVWLAQLLGKKMVHFKGIILELHR 229
+++ +A L+ + + I E H+
Sbjct: 566 DLLRIA-LMAED----EAIFEEAHK 585
Score = 51.4 bits (122), Expect = 2e-06
Identities = 107/754 (14%), Positives = 211/754 (27%), Gaps = 258/754 (34%)
Query: 370 FDLDEELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVWEDLP 429
F+ E K+++++ F ++ + K+++ + +S S+ EE+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFD----------CKDVQDMPKSILSK--EEI----- 51
Query: 430 DKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQE 489
+H+I + + LL ++E E V++ ++ ++ S K E
Sbjct: 52 ---DHIIMSKD---AVSGTLRLFW--TLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTE 101
Query: 490 ASNARSTNDAAATTVKNLEAQIDEYSNKIARILQDDG--FKKGDV------LAL---MCE 538
+ T Y + R L +D F K +V L L + E
Sbjct: 102 ------QRQPSMMT--------RMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 539 NRPE-YVGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRES 597
RP V + G G K + + S + +
Sbjct: 147 LRPAKNVLID-GVLGSG-----------KTWVA--LDVCLSYKV--------------QC 178
Query: 598 IPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM 657
D K+F L+ + P ++ E LQ LLY T +
Sbjct: 179 KMDFKIFWLNLKNCNSPE--TVL-----------EMLQK---LLYQIDPNWTSRSDHSSN 222
Query: 658 PNFKVLLGGQVGKHLLSLGSGDVIY-NCLPMYHSAGGLIGTIPALILGSSIAIRTKFSAS 716
++ + LL Y NCL L+L
Sbjct: 223 IKLRIHSIQAELRRLLKSKP----YENCL---------------LVL------------- 250
Query: 717 NYFRDCAKYKCNAGIY----IGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVK 772
+ NA + + C+ LL ++ QV +
Sbjct: 251 ---LNV----QNAKAWNAFNLS--CKILLTTRFK------QVTDFLSAA----------T 285
Query: 773 RFHVQTIIEFYGATEGNANLVNMDNTEG----AVGIIPTLLP---TFLHPVAIIQFDLVE 825
H+ T D + + P LP +P +
Sbjct: 286 TTHISLDHHSMTLTP--------DEVKSLLLKYLDCRPQDLPREVLTTNPRRL------- 330
Query: 826 NQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSR-HFYGYADKKESQKKILE---NVFKP 881
II E + + + + + + I+E NV +P
Sbjct: 331 ---------------------SIIAESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP 368
Query: 882 GD--KYFLSGDMMVMDE--------LGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLP 931
+ K F + V L ++F D V+ + + + K
Sbjct: 369 AEYRKMFD--RLSVFPPSAHIPTILLSLIWFDVIKSDV----MVVVNKLHKYSLVEKQPK 422
Query: 932 YTEFTVYGV---KVGDLDGRAGM-IAIVDTSNQVDLKLLVQGLDANLPA---YARPLFVR 984
+ ++ + L+ + +IVD ++ D P Y +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVD---HYNIPKTFDSDDLIPPYLDQY---FYSH 476
Query: 985 I---MKAIEMTGTFKIKKIQLQNEGF-------------DPSQISDDLY-VRQGSEFVRM 1027
I +K IE + ++ + F I + L ++ ++
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 1028 TPNTYEKIMNDQPGMIIGEIKQSDPSRHFYGYAD 1061
YE+++N I+ + + + + Y D
Sbjct: 537 NDPKYERLVNA----ILDFLPKIEENLICSKYTD 566
Score = 44.1 bits (103), Expect = 3e-04
Identities = 74/487 (15%), Positives = 129/487 (26%), Gaps = 156/487 (32%)
Query: 10 LEDGVDREIRWLVYNV-------DHLDQEEN-------EDSSSEDEFDRVPVLASSELPI 55
++ +D +I WL N+ L+ + +S D + L +
Sbjct: 176 VQCKMDFKIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQA 232
Query: 56 PKWAHLDQDEMNDCTLV--GIVNPSLFFLRLNQFQDIRVYIILLTLPRDVNIIYSLSRAI 113
L +C LV + N N F ++ I+L T R + LS A
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKA----WNAF-NLSCKILLTT--RFKQVTDFLSAAT 285
Query: 114 LGTKRMAATNTTLVSE-----FKKSVKRRPNAPCYYFQDETWTIKQIDEYS-NKIARILQ 167
+ + TL + K + RP QD + + + IA ++
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRP-------QDLPREVLTTNPRRLSIIAESIR 338
Query: 168 DDGFKKGDVLALMCENRPEYVGVW--LGAAKLGVISKLSNVVWLAQL---LGKKMVHFKG 222
D + W + KL I + S L L +KM
Sbjct: 339 DG------------LATWDN---WKHVNCDKLTTIIESS----LNVLEPAEYRKMFDRLS 379
Query: 223 IILELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSEL 282
+ + LL L D SD +
Sbjct: 380 VFPP-----------SAHIP------------TILLSLIWFDV----------IKSDVMV 406
Query: 283 AMILFVDYSDKQEIPYEDLVPIHRPQL-----ISNLPF---QAIECYLA---------GV 325
+ YS ++ P E + I L + N ++ Y
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 326 EPLEGVWSQAAYDFL-------------DDFTRLFA--RVVSVKL--HGEETGGRRYAVE 368
L+ + Y + F +F R + K+ +
Sbjct: 467 PYLDQYF----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522
Query: 369 LF-DLD-------EELNINKELVALDLAKF----------SEDANV---CLSEDDATIFK 407
L + + LV + F S+ ++ L +D IF+
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVN-AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Query: 408 EIEKLMQ 414
E K +Q
Sbjct: 582 EAHKQVQ 588
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 76.3 bits (188), Expect = 2e-14
Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 23/209 (11%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
+Q+ + +A+ L G GD + + EYV +LGA + G I+ ++
Sbjct: 62 SQLYRRTLNVAQELSRCG-STGDRVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVT 120
Query: 569 LVHSISTVKS---KAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPA 625
S S + AI+ ++ ++ P + E DL+
Sbjct: 121 DERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEV--------DLLDLDAP 172
Query: 626 SEVKPSEPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLSLGSG 678
+ E S Y+ YTSG+T P + NF+ L+ G
Sbjct: 173 NGYTFKED--EYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPN 230
Query: 679 DVIYNCLPMYHSAGGLIGTI-PALILGSS 706
+ + LP YH GL+ I ++ G
Sbjct: 231 SALVSWLPFYHD-MGLVIGICAPILGGYP 258
Score = 45.8 bits (109), Expect = 6e-05
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 120 AATNTTLVSEFKKSVKRRPNAPCYYFQD---------ETWTIKQIDEYSNKIARILQDDG 170
+ +L + + + +P+ P + F D T T Q+ + +A+ L G
Sbjct: 20 HMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG 79
Query: 171 FKKGDVLALMCENRPEYVGVWLGAAKLGVI 200
GD + + EYV +LGA + G I
Sbjct: 80 -STGDRVVISAPQGLEYVVAFLGALQAGRI 108
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 76.6 bits (189), Expect = 2e-14
Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 33/204 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVI-------SALIN 561
+ + A+ L KKGD +AL+ E E+V + G++ +
Sbjct: 53 QTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPLAIPMGVGQ 112
Query: 562 TNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMK 621
+ L +++ + AII + P + A P++ + +
Sbjct: 113 RDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDNPELHVLSHAWF--------KALP 164
Query: 622 TTPASEVKPSEPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLS 674
+ +P + + Y+ YTSG+T P+ +M N + + +
Sbjct: 165 EADVALQRP-----VPNDIAYLQYTSGSTRFPRGVIITHREVMANLR-----AISHDGIK 214
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTI 698
L GD + LP YH GL+G +
Sbjct: 215 LRPGDRCVSWLPFYHD-MGLVGFL 237
Score = 44.2 bits (105), Expect = 2e-04
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 115 GTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQD---ETWTIKQIDEYSNKIARILQDDGF 171
A TLV + Y + + + + + A+ L
Sbjct: 12 SLPMRYADFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNL 71
Query: 172 KKGDVLALMCENRPEYVGVWLGAAKLGVI 200
KKGD +AL+ E E+V + G++
Sbjct: 72 KKGDRVALIAETSSEFVEAFFACQYAGLV 100
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics,
structural genomics consortium, SGC, alternative
splicing, RNA-binding; 1.75A {Homo sapiens}
Length = 94
Score = 66.7 bits (163), Expect = 1e-13
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+L KL E+ + H G + A + R +V T ++ + F
Sbjct: 5 LQLDKLVNEMTQHYENSVPEDLT--VHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 62
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIEC 320
VD+ D + P +DL + R +S LPFQAIEC
Sbjct: 63 VDFGDNGDCPLKDLRAL-RSDFLS-LPFQAIEC 93
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 68.5 bits (168), Expect = 7e-12
Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 34/204 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALI-----NTN 563
Q+D+++ IA LQ +G K GD + L+ + +LG G I+ I
Sbjct: 44 EQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKL 103
Query: 564 LKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTT 623
L K ++ K +++ A + I L+ P + + +
Sbjct: 104 LDK--AQRIVTNSKPVIVLMIA----------DHIKKFTADELNTN-PKFLKIPAIALES 150
Query: 624 PASEVKPS--EPLQTSDSLLYI-YTSGTTGLPK------AAIMPNFKVLLGGQVGKHLLS 674
S S+ + ++ YTSG+T PK ++ N +
Sbjct: 151 IELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKI------FTSFH 204
Query: 675 LGSGDVIYNCLPMYHSAGGLIGTI 698
+ +I++ LP +H GLIG I
Sbjct: 205 MNDETIIFSWLPPHHD-MGLIGCI 227
Score = 54.2 bits (131), Expect = 2e-07
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 116 TKRMAATNTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGF 171
K+ +LV + PN F + ET T +Q+D+++ IA LQ +G
Sbjct: 3 LKKEYLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGA 62
Query: 172 KKGDVLALMCENRPEYVGVWLGAAKLGVI 200
K GD + L+ + +LG G I
Sbjct: 63 KPGDRVLLLFAPGLPLIQAFLGCLYAGCI 91
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 64.1 bits (157), Expect = 2e-10
Identities = 36/197 (18%), Positives = 77/197 (39%), Gaps = 33/197 (16%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + + ++ L+ G GD +A + N ++ + +G + N L +
Sbjct: 51 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE 110
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL--DETKPDLPNLSDLMKTTPAS 626
+ + ++ + K ++ P +EAIR + V+ F++ ++ + +
Sbjct: 111 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADP 170
Query: 627 EVKPSEPLQTSDSLLYIYTSGTTGLPK--------------AAIMPNFKVLLGGQVGKHL 672
P + + + Y T+GTTGLPK AA + +
Sbjct: 171 ---VRVPERAACGMAY--TTGTTGLPKGVVYSHRALVLHSLAASLVD------------G 213
Query: 673 LSLGSGDVIYNCLPMYH 689
+L DV+ +PM+H
Sbjct: 214 TALSEKDVVLPVVPMFH 230
Score = 46.7 bits (112), Expect = 3e-05
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 883 DKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKV 942
D +F +GD+ V DE GY+ KDR D + GE +S++++E + + E V +
Sbjct: 411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIP- 469
Query: 943 GDLDGRAG----MIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIK 998
+ + + +L L A + P + I T K
Sbjct: 470 ---HPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFL 526
Query: 999 KIQL 1002
K L
Sbjct: 527 KRAL 530
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 1e-07
Identities = 61/369 (16%), Positives = 125/369 (33%), Gaps = 143/369 (38%)
Query: 156 DEYSN-KIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLG 214
D Y K A+ + + + D + G + L ++ ++N V L
Sbjct: 1634 DLYKTSKAAQDV----WNRAD----------NHFKDTYGFSILDIV--INNPVNLT---- 1673
Query: 215 KKMVHFKGI----ILELHRLMKLN---------KEIGVDVSKTSSRYSKEQCHP-GLLCL 260
+HF G I E + M ++I ++++ S+ Y+ GLL
Sbjct: 1674 ---IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEKGLL-- 1726
Query: 261 ARSDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNLPFQAI-- 318
+ T ++ A+ L ++ + +EDL + + +P A
Sbjct: 1727 --------------SATQFTQPALTL-MEKA-----AFEDL----KSK--GLIPADATFA 1760
Query: 319 -----ECY-----LAGVEPLEGVWSQAAYDFLDDFTRL-FAR--VVSVKLHGEETGGRRY 365
E Y LA V +E + F R + V + +E G Y
Sbjct: 1761 GHSLGE-YAALASLADVMSIE------------SLVEVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 366 AVELFDLDEELNINKELVALDLAKFSEDANVCLSEDDATIFKEIEKLMQSSESEDGEEVW 425
+ + IN VA A FS++A ++ +++ G V
Sbjct: 1808 GM--------IAINPGRVA---ASFSQEA--------------LQYVVERVGKRTGWLV- 1841
Query: 426 EDLPDKSNHVIEKQAINFDQQDEEYVI--DEAALLDEEEMTEFVRQLQSK---IEQLEVD 480
+ +N++ ++++YV D AL + +T + ++ + I +L+
Sbjct: 1842 -------------EIVNYNVENQQYVAAGDLRAL---DTVTNVLNFIKLQKIDIIELQKS 1885
Query: 481 VTYSRFKQE 489
++ +
Sbjct: 1886 LSLEEVEGH 1894
Score = 51.6 bits (123), Expect = 1e-06
Identities = 117/668 (17%), Positives = 192/668 (28%), Gaps = 240/668 (35%)
Query: 498 DAAAT---TVK--NLEAQI----DEYSNKIARILQDDGFKKG-----DVLALMCENRPEY 543
DA +T T+ +LE + + A LQ+ F K + A ++ P
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFI--ASQLQEQ-FNKILPEPTEGFAA--DDEPTT 56
Query: 544 VGVWLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKL 603
L LG +S+L+ + Q ++ L E + + D+
Sbjct: 57 P-AELVGKFLGYVSSLVEPSKVGQF----------DQVLNLCLTEFENCYLEGN--DIHA 103
Query: 604 F---LLDETKPDLPNLSDLMKT-TPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPN 659
LL E L +L+K A + + S+S L+ + G A ++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF--RAVGEG--NAQLVAI 159
Query: 660 FKVLLGGQVGKHLLSLGSGDV-------IYNCLPMYHS-AGGLIGTIPALILGSSIAIRT 711
F GGQ G+ D +Y YH G LI + RT
Sbjct: 160 F----GGQ--------GNTDDYFEELRDLYQ---TYHVLVGDLIKFSAETLSELI---RT 201
Query: 712 KFSASNYFR---DCAK------------YKCNA-----GIYIGEMCRYLLASKESEADYS 751
A F + + Y + I + ++ Y++ +K ++
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLL--GFT 259
Query: 752 HQVVKMIGVGMRG--------------DIWAKFVKR--------FHV----QTIIEFYGA 785
++ G G D W F F + E Y
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY---EAYPN 316
Query: 786 TEGNANLV--NMDNTEGAVGIIPT--LLPTFLHPVAIIQF------DLVENQPIRDPKTG 835
T +++ +++N EG P+ L + L + + L + +
Sbjct: 317 TSLPPSILEDSLENNEGV----PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE---IS 369
Query: 836 LCIRCKYNQPGMII--GEIKQSDPSRHFYGY--------ADKKESQKKILENVF---KP- 881
L N ++ G P + YG A Q +I F K
Sbjct: 370 L-----VNGAKNLVVSG------PPQSLYGLNLTLRKAKAPSGLDQSRIP---FSERKLK 415
Query: 882 GDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI-----SKYL-PYTEF 935
FL + S L P ++
Sbjct: 416 FSNRFL-------------------------------------PVASPFHSHLLVPASDL 438
Query: 936 TVYGVKVGDLDGRAGMIAI-V-DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAI---- 989
+ ++ A I I V DT + DL + L ++ RI+ I
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSDL----RVLSGSISE-------RIVDCIIRLP 487
Query: 990 ---EMTGTFKIKKIQLQNEGFDPSQISD--DLYVR--QGSEFVRM-TPNTYEKIMNDQPG 1041
E T FK I L F P S L R G+ VR+ T + +D G
Sbjct: 488 VKWETTTQFKATHI-LD---FGPGGASGLGVLTHRNKDGTG-VRVIVAGTLDINPDDDYG 542
Query: 1042 MIIGEIKQ 1049
KQ
Sbjct: 543 F-----KQ 545
Score = 48.9 bits (116), Expect = 1e-05
Identities = 44/272 (16%), Positives = 81/272 (29%), Gaps = 114/272 (41%)
Query: 822 DLVENQPIR-----DPKTGLCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILE 876
D+V N P+ + G IR Y MI F D K +KI +
Sbjct: 1663 DIVINNPVNLTIHFGGEKGKRIRENY--SAMI------------FETIVDGKLKTEKIFK 1708
Query: 877 NVFKPGDKYFLSGD-------------MMVMDELGYLYFKDRTGDTYRWK---------- 913
+ + Y + + +M F+D K
Sbjct: 1709 EINEHSTSYTFRSEKGLLSATQFTQPALTLM---EKAAFED-------LKSKGLIPADAT 1758
Query: 914 ------GEN---VST---MEVEATISKYLPYTEFTVY--GVKV-----GDLDGRA--GMI 952
GE S M +E+ + V+ G+ + D GR+ GMI
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVE--------VVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 953 A-----IVDTSNQVDLKLLVQGLDA-----------NLPA--YARPLFVRI---MKAIEM 991
A + + +Q L+ +V+ + N+ Y ++A++
Sbjct: 1811 AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV------AAGDLRALDT 1864
Query: 992 TGT----FKIKKIQLQ--NEGFDPSQISDDLY 1017
K++KI + + ++ L+
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 47.7 bits (113), Expect = 2e-05
Identities = 107/616 (17%), Positives = 188/616 (30%), Gaps = 210/616 (34%)
Query: 306 RPQLISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVVSVKLHGEETGGRRY 365
RP +S+ ++E L V P + A+ + F K+ E T G
Sbjct: 7 RPLTLSH---GSLEHVLL-V-P-TASFFIAS-QLQEQFN---------KILPEPTEG--- 47
Query: 366 AVELFDLDEELNINKELVALDLAKFSEDANVCLSEDDATIFKEI-EKLMQSSESE--DGE 422
F D+E ELV KF + + F ++ + E+ +G
Sbjct: 48 ----FAADDEPTTPAELV----GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 423 EVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQ---LQSKIEQLEV 479
++ H + AA L +E T V+ +++ I
Sbjct: 100 DI---------HAL------------------AAKLLQENDTTLVKTKELIKNYITARI- 131
Query: 480 DVTYSRFKQEASNA--RSTNDAAATTVK------NLEAQIDE----YS----------NK 517
+ F +++++A R+ + A V N + +E Y
Sbjct: 132 -MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 518 IARILQ---------DDGFKKG-DVLALMC--ENRP--EYVGVWLGAAK-----LGVISA 558
A L + F +G ++L + N P +Y L + +GVI
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY----LLSIPISCPLIGVIQL 246
Query: 559 L--INT--NLKKQP--LVHSIS--TVKSKAIIVSAL---------YYPEIEAIRESIPDV 601
+ T L P L + T S+ ++ + ++ ++R++I
Sbjct: 247 AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF---VSVRKAI--T 301
Query: 602 KLFLL----DETKP--DLPNLSDLMKTTPASEVKPS----------EPLQT--------- 636
LF + E P LP S L + +E PS E +Q
Sbjct: 302 VLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 637 -SDSLLYI--YTSGT----TGLPKAAIMPNFKVLLGGQVGKHLLSLGSGD---------- 679
+ + I +G P++ L G + SG
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQS--------LYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 680 --VIYNC-LPM---YHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAK--YKCNAGI 731
N LP+ +HS L+ LI + F+A D Y G
Sbjct: 413 KLKFSNRFLPVASPFHSH--LLVPASDLINKDLVKNNVSFNAK----DIQIPVYDTFDG- 465
Query: 732 YIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEF-YGATEGNA 790
++ S ++V I + + W +F I++F G G
Sbjct: 466 --SDLR-------VLSGSISERIVDCI-IRLPVK-WET-TTQFKATHILDFGPGGASGLG 513
Query: 791 NLVNMDNTEGA-VGII 805
L + N +G V +I
Sbjct: 514 VLTH-RNKDGTGVRVI 528
Score = 35.4 bits (81), Expect = 0.14
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 29/97 (29%)
Query: 1020 QGSEFVRMTPNTYE-------------KIMNDQPGMIIGEIKQSDPSR---HFYGYADKK 1063
QGS+ M + Y+ D G I +I ++P HF G K+
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 1064 -------------ESQKKILENVFKPGDKYFLSVIIR 1087
K E +FK +++ S R
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Score = 30.0 bits (67), Expect = 5.9
Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 37/139 (26%)
Query: 969 GLD--ANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQNEGFDPSQISDDLYVRQGSEFVR 1026
G+D A A+ ++ R + T F I I + N P L + G E +
Sbjct: 1632 GMDLYKTSKA-AQDVWNRADNHFKDTYGFSILDIVINN----PVN----LTIHFGGEKGK 1682
Query: 1027 MTPNTYEKIMNDQPG-------MIIGEIKQSDPSRHFYGYADKKE------SQ------- 1066
Y ++ + I EI + S F +K +Q
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLME 1740
Query: 1067 ----KKILENVFKPGDKYF 1081
+ + P D F
Sbjct: 1741 KAAFEDLKSKGLIPADATF 1759
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics
consortium, antibody, SGC, protein immune system
complex; 2.05A {Homo sapiens}
Length = 77
Score = 44.0 bits (104), Expect = 7e-06
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 254 HPGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPI 304
PG C A + + + R +V S A++ F+DY + +E+ ++ PI
Sbjct: 19 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 70
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize,
ISO-propanol, transcri; 1.78A {Homo sapiens} PDB:
3pmt_A*
Length = 54
Score = 41.9 bits (99), Expect = 2e-05
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 254 HPGLLCLAR-SDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPI 304
PG C A +D + R +V S A++ F+DY + +E+ ++ PI
Sbjct: 3 KPGDECFALYWEDNK-FYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.34.9.1
Length = 78
Score = 42.6 bits (100), Expect = 2e-05
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 255 PGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPIHRPQLISNL 313
PG C A + + + R +V S A++ F DY + +E+ ++ P+ + +
Sbjct: 12 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPV-QTEAWVRD 70
Query: 314 PFQA 317
P
Sbjct: 71 PNSG 74
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding
protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Length = 64
Score = 40.1 bits (94), Expect = 1e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 245 SSRYSKEQCHPGLLCLAR-SDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLV 302
+S G C+A S+D Y ++ + ++ A I F Y + + P +L
Sbjct: 1 ASTQPTHSWKVGDKCMAVWSEDGQCY-EAEIEEIDEENGTAAITFAGYGNAEVTPLLNLK 59
Query: 303 PI 304
P+
Sbjct: 60 PV 61
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR
{Homo sapiens} SCOP: b.34.9.1
Length = 88
Score = 40.0 bits (93), Expect = 2e-04
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 243 KTSSRYSKEQCHPGLLCLAR-SDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYED 300
K ++ S +Q G C A S+D Y + E ++++ Y +++E D
Sbjct: 1 KKNTAASLQQWKVGDKCSAIWSEDGCIY-PATIASIDFKRETCVVVYTGYGNREEQNLSD 59
Query: 301 LVPI 304
L+
Sbjct: 60 LLSP 63
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 43.7 bits (104), Expect = 3e-04
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 19/96 (19%)
Query: 592 EAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTG 650
E +I + L L E + VK D Y I+TSGTTG
Sbjct: 109 EEFPLTIEGISLVSLSEIESAKLAEMP---YERTHSVKG-------DDNYYIIFTSGTTG 158
Query: 651 LPKAAIMP-----NFKVLLGGQVGKHLLSLGSGDVI 681
PK + +F + + +
Sbjct: 159 QPKGVQISHDNLLSF---TNWMIEDAAFDVPKQPQM 191
Score = 42.1 bits (100), Expect = 9e-04
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
+ ++ ++ + + + P Y E T Q+ S+ IA + + +
Sbjct: 2 SLKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFG 61
Query: 182 E 182
Sbjct: 62 A 62
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 43.8 bits (104), Expect = 3e-04
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCE 182
L FK++V P+AP + +T + +++DE +N+IAR LQ G KG V+AL +
Sbjct: 463 TKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTK 522
Query: 183 NRPEYVGVWLGAAKLG 198
E V LG K G
Sbjct: 523 RSLELVIGILGVLKAG 538
Score = 42.6 bits (101), Expect = 8e-04
Identities = 41/178 (23%), Positives = 66/178 (37%), Gaps = 45/178 (25%)
Query: 493 ARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549
+ DA A T ++DE +N+IAR LQ G KG V+AL + E V
Sbjct: 474 VNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV----- 528
Query: 550 AAKLGVISALINTNLK----------KQP---LVHSISTVKSKAIIVSALYYPEIEAIRE 596
LGV LK K P + + ++ + ++ + +
Sbjct: 529 IGILGV--------LKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY 580
Query: 597 SIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPK 653
+ + + D + + PA+ + P + Y +YTSGTTG PK
Sbjct: 581 TGTTLFI--------DDQTRFEEQASDPATAIDP-------NDPAYIMYTSGTTGKPK 623
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 42.9 bits (102), Expect = 6e-04
Identities = 12/84 (14%), Positives = 31/84 (36%)
Query: 115 GTKRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKG 174
+ + T+V+ F + P+ + + +Q+ + + +++ L + + G
Sbjct: 18 NSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPG 77
Query: 175 DVLALMCENRPEYVGVWLGAAKLG 198
L + E E + L G
Sbjct: 78 VCLGVYGEYSRESITCLLAILLSG 101
Score = 42.9 bits (102), Expect = 6e-04
Identities = 34/207 (16%), Positives = 56/207 (27%), Gaps = 54/207 (26%)
Query: 493 ARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLG 549
A A + Q+ + + +++ L + + G L + E E + L
Sbjct: 37 AALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLA 96
Query: 550 AAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALY------YPEIEAIRESIPD--V 601
G Y P E
Sbjct: 97 ILLSG------------------------------HHYLYIDLKQPA-AWNAELCRQVDC 125
Query: 602 KLFL----LDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPKAAI 656
+L L LP + PA+ + P +D + Y ++SGTTG PKA
Sbjct: 126 RLILDCSTTPTPANGLPCVPVR--HLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIA 183
Query: 657 MPNFKV--LLGGQVGKHLLSLGSGDVI 681
+ + L GQ L+
Sbjct: 184 CTHAGITRLCLGQ---SFLAFAPQMRF 207
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy,
RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
PDB: 4a4e_A* 4a4g_A*
Length = 59
Score = 35.9 bits (83), Expect = 0.003
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 255 PGLLCLAR-SDDKSGYNRVQVTDTSDSELAMILFVDYSDKQEIPYEDLVPI 304
G C A S+D Y + E ++++ Y +++E DL+
Sbjct: 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 40.2 bits (95), Expect = 0.003
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 116 TKRMAATNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGD 175
TK + T+ F++ V +RPN ++E T +++ +N++ARI + G K
Sbjct: 31 TKAEYPRDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDT 90
Query: 176 VLALMCE 182
++ +M E
Sbjct: 91 LVGIMME 97
Score = 38.6 bits (91), Expect = 0.011
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 8/43 (18%)
Query: 612 DLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPK 653
+ + T K L Y IYTSGTTG PK
Sbjct: 163 EEDTIKIREGTNLHVPSKS-------TDLAYVIYTSGTTGNPK 198
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 0.004
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 28/100 (28%)
Query: 414 QSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDE--EEMTEFVRQLQ 471
+ E E + W E+Q + D + E ++ +++ E+ ++
Sbjct: 80 LTQEPESIRK-WR----------EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Query: 472 SKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQI 511
EQ+E K + +N R A + +A I
Sbjct: 129 ---EQVE--------KNKINN-R---IADKAFYQQPDADI 153
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 39.8 bits (94), Expect = 0.005
Identities = 12/62 (19%), Positives = 27/62 (43%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENR 184
L+ + +K P+ + ++D T KQ+ E S+ +A + + + + +
Sbjct: 2 KLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQ 61
Query: 185 PE 186
PE
Sbjct: 62 PE 63
Score = 39.8 bits (94), Expect = 0.005
Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 44/160 (27%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLGVISALINTNLK-- 565
Q+ E S+ +A + + + + +PE + LG +K
Sbjct: 30 KQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINF------LGC--------VKAG 75
Query: 566 -----------KQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLP 614
+ +K ++ + A+ + V++ D K D+
Sbjct: 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSA-------TAVTVTDLPVRIVSEDNLK-DIF 127
Query: 615 NLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTGLPK 653
P VK D Y IYTSG+TG PK
Sbjct: 128 FTHKGNTPNPEHAVKG-------DENFYIIYTSGSTGNPK 160
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 39.5 bits (93), Expect = 0.006
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 624 PASEVKPSEPLQTSDSLLY-IYTSGTTGLPK 653
+ + Y +YTSG+TG PK
Sbjct: 161 STQDTSDILNNYPENLDAYLLYTSGSTGTPK 191
Score = 33.4 bits (77), Expect = 0.48
Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 13/94 (13%)
Query: 116 TKRMAATNTTLVSEFKKSVKRRPNAP----------CYYFQDETWTIKQIDEYSNKIARI 165
+ + K P E WT K+++E +N++A +
Sbjct: 12 VSAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANL 71
Query: 166 LQDDGFKKGDVLALMCENRPE-YVGVWLGAAKLG 198
+ G +A+ + + + +G K G
Sbjct: 72 IIHAS-LHGRAIAVSLDRSLIAFAII-VGIMKSG 103
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 39.0 bits (92), Expect = 0.009
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 125 TLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL-ALMCE 182
L+ + + P + Q ++ T +++ E S++ A +Q + +
Sbjct: 2 KLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGH 60
Score = 37.9 bits (89), Expect = 0.021
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 592 EAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLY-IYTSGTTG 650
+ ++ + + ++ + VK Y IYTSG+TG
Sbjct: 107 AGLSIDAVGQQIQTVS---AEELLENEGGSVSQDQWVKE-------HETFYIIYTSGSTG 156
Query: 651 LPK 653
PK
Sbjct: 157 NPK 159
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 37.0 bits (85), Expect = 0.031
Identities = 32/253 (12%), Positives = 61/253 (24%), Gaps = 41/253 (16%)
Query: 611 PDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIM-PNFKVLLGGQVG 669
++S ++ P + + P + L + GTTG PK + + L
Sbjct: 66 RQFSDISHCLRQEPVANLVP-QGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRM 124
Query: 670 KHLLSLG--SGDVIYNCLPMY-HSAGGLIGTIPALILGSSIAIR------TKFSASNYFR 720
+P H G + + G +I + +
Sbjct: 125 SGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTA 184
Query: 721 DCAKYKCNAGIYIGEMCR--------------YLLASKESEADYSHQVVKMIGVG---MR 763
KY + + L + Q + I +G +
Sbjct: 185 TVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244
Query: 764 GDIWAKFVKRFHVQTII-EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFD 822
D YG+T ++ T + + I +D
Sbjct: 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLLITS------ESQQVIYDSFSPFITYD 298
Query: 823 LVENQPIRDPKTG 835
+V D T
Sbjct: 299 VV------DSITA 305
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 33.3 bits (77), Expect = 0.45
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
DL++ AS E + D L +YTSG+TG PK
Sbjct: 239 DLIEK--ASPEHQPEAMNAEDPLFILYTSGSTGKPK 272
Score = 29.5 bits (67), Expect = 6.9
Identities = 26/111 (23%), Positives = 38/111 (34%), Gaps = 21/111 (18%)
Query: 819 IQFDLV--ENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKIL 875
+Q LV E P G L I + PG R +G ++
Sbjct: 444 VQPALVDNEGHPQEGATEGNLVI--TDSWPGQA----------RTLFG------DHERFE 485
Query: 876 ENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTMEVEATI 926
+ F + SGD DE GY + R D G + T E+E+ +
Sbjct: 486 QTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 33.3 bits (77), Expect = 0.52
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 618 DLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPK 653
K P P+ + D L +YTSG+TG PK
Sbjct: 245 TEKKK--YKTYYPCTPVDSEDPLFLLYTSGSTGAPK 278
>2kw7_A Conserved domain protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Porphyromonas gingivalis}
Length = 157
Score = 31.4 bits (71), Expect = 0.88
Identities = 15/99 (15%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 445 QQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTV 504
V DEA LL + + ++ + + + A T+
Sbjct: 15 ADSTRLVTDEAGLLSNAQ----EEVMNGRLRAIR--------------SSHAVEFAVVTL 56
Query: 505 KNLEAQ-IDEYSNKIARILQ--DDGFKKGDVLALMCENR 540
++ +++++ K+AR ++ G +L L+ + R
Sbjct: 57 PSIGDAPLEDFTLKLARQWGVGNEKNNNGLLLVLVLDQR 95
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold,
acid phosphatase, arabidopsis THAL thylakoid lumen,
hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A
3ptj_A
Length = 153
Score = 30.9 bits (70), Expect = 0.98
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 20/86 (23%)
Query: 437 EKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARST 496
E +N E YV+D+A +L L+ + LE R
Sbjct: 4 EFNILNDGPPKETYVVDDAGVLSRVT----KSDLKKLLSDLE--------------YRKK 45
Query: 497 NDAAATTVKNLEAQ--IDEYSNKIAR 520
TV+ L ++ EY++++
Sbjct: 46 LRLNFITVRKLTSKADAFEYADQVLE 71
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 31.9 bits (73), Expect = 1.1
Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 401 DDATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVI-EKQAI-----NFDQQDEEY--VI 452
D + +E++ E D VW + P+++ + E+ ++ DQ + V
Sbjct: 26 DYDAKKERLEEVNAELEQPD---VWNE-PERAQALGKERSSLEAVVDTLDQMKQGLEDVS 81
Query: 453 DEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDA 499
L E + E + ++++ LE + F++ S + D
Sbjct: 82 GLLELAVEADDEETFNEAVAELDALEEKLAQLEFRRMFSGEYDSADC 128
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 30.9 bits (70), Expect = 1.9
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 24/112 (21%)
Query: 413 MQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDEEEMTEFVRQLQS 472
M+ E + E+ D P++ + E+ A +++ ++EA + E
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAE---------- 50
Query: 473 KIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQD 524
E + AA + LEA++ E ++ R+ D
Sbjct: 51 --------------PAEKAPTAEELAAAKAQIAELEAKLSEMEHRYLRLYAD 88
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 31.1 bits (71), Expect = 2.3
Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 15/95 (15%)
Query: 401 DDATIFKEIEKLMQSSESEDGEEVWEDLPDKSNHVIEK-----------QAINFDQQDEE 449
D +++L + E +W D P+ + V ++ +++ D Q
Sbjct: 18 DIPQKETRLKELERRLEDPS---LWND-PEAARKVSQEAARLRRTVDTFRSLESDLQGLL 73
Query: 450 YVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYS 484
+++E + E + + + K+++L +
Sbjct: 74 ELMEELPAEEREALKPELEEAAKKLDELYHQTLLN 108
>2kpt_A Putative secreted protein; methods development, alpha/beta,
structural genomics, PSI-2, protein structure
initiative; NMR {Corynebacterium glutamicum}
Length = 148
Score = 29.8 bits (67), Expect = 2.7
Identities = 15/122 (12%), Positives = 38/122 (31%), Gaps = 26/122 (21%)
Query: 449 EYVIDEAALLDEEEMTEFVRQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLE 508
+ V D + + + +Q+ I+ ++ A + + +
Sbjct: 15 DNVTDYTGQISSSD----ITNIQAAIDDVK--------------ASEQKVIFVVFLSSFD 56
Query: 509 -AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEY---VGVWLGAAKLGVISALINTNL 564
+ ++ + + +G + AL E R +Y G A+L + L
Sbjct: 57 GVDPETWTQQALQ---ANGGGNVLIYALAPEER-QYGIQGGTQWTDAELDAANNAAFQAL 112
Query: 565 KK 566
+
Sbjct: 113 SQ 114
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 30.1 bits (67), Expect = 2.8
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 3/112 (2%)
Query: 416 SESEDGEEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDEAALLDE-EEMTEFVRQLQSKI 474
S ++ W++L K ++ + E EA L + + + R LQ+
Sbjct: 6 SSLKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADN 65
Query: 475 EQL--EVDVTYSRFKQEASNARSTNDAAATTVKNLEAQIDEYSNKIARILQD 524
++L EV+ + + + + + + A ++ + + Q
Sbjct: 66 QRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 30.1 bits (67), Expect = 3.3
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 947 GRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGT 994
G GM V+ S++V +D++ A P +RI+ +E++ T
Sbjct: 114 GSVGMAIQVNYSSEVK----ENSVDSDDKAKVPP-LIRIVSGLELSDT 156
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase,
oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A
2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A
3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A
3uac_A 3uab_A 3uae_A 3nsy_A ...
Length = 488
Score = 30.7 bits (69), Expect = 3.4
Identities = 20/168 (11%), Positives = 40/168 (23%), Gaps = 5/168 (2%)
Query: 757 MIGVGMRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPV 816
+ +G R ++ + + + + + I L
Sbjct: 246 PVLMGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDT 305
Query: 817 AIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPS----RHFYGYADKKESQK 872
L + + K L + + GM + K D + H
Sbjct: 306 LSSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNM 365
Query: 873 KILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTM 920
+ + K + + D + F G RW V M
Sbjct: 366 NHMNHGGKFDFHHANKINGQAFDMNKPM-FAAAKGQYERWVISGVGDM 412
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 30.2 bits (69), Expect = 4.0
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 29/74 (39%)
Query: 518 IARILQDDGFKK--------------GDVLALMCENRPEYVGVWLGAAKLGVISA----- 558
I R L+ G + V R + V+L AAK+G I A
Sbjct: 19 IRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQ--VYLAAAKVGGIVANNTYP 76
Query: 559 --------LINTNL 564
+I +N+
Sbjct: 77 ADFIYQNMMIESNI 90
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 29.5 bits (67), Expect = 6.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Query: 137 RPNAPCYYFQDETWTI--KQIDEYS---NKIARIL-----QDDGFK-KGDVLALMCENRP 185
+ AP F DE I K+ D + ++ R L + DGF +GDV + NRP
Sbjct: 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166
Query: 186 E 186
+
Sbjct: 167 D 167
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 28.8 bits (64), Expect = 7.1
Identities = 9/91 (9%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 392 EDANVCLSEDDATIFKEI----EKLMQSSESEDGEEVWEDLPDKSNHVIEKQAINFDQQD 447
E + ++ D + ++ ++L Q + + + + ++ + + ++ +D
Sbjct: 90 EQTSNEVTTSDPQLLLKVLDIHDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKD 149
Query: 448 EEYVIDEAALLDEEEMTEFVRQLQSKIEQLE 478
A L E + L +
Sbjct: 150 ----YAAAVKLTVELK--YWYNLAKAFKDWA 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 7.6
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 13/41 (31%)
Query: 437 EKQAI-NFDQQDEEYVIDEA-ALLDEEEMTEFVRQLQSKIE 475
EKQA+ + Y D A AL +++ +E
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-----------AIKATME 47
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 29.1 bits (65), Expect = 9.7
Identities = 15/134 (11%), Positives = 38/134 (28%), Gaps = 12/134 (8%)
Query: 404 TIFKEIEKLMQSSESEDG---------EEVWEDLPDKSNHVIEKQAINFDQQDEEYVIDE 454
+ + + ++ E E D + ++ + + E+ D
Sbjct: 707 DLERSTIDAITLFGDKNTKNVVLEKSYTEYMEGFTDAATGEAKRGFMTVVSELEQRFPDP 766
Query: 455 AALLDEEEMTEFV---RQLQSKIEQLEVDVTYSRFKQEASNARSTNDAAATTVKNLEAQI 511
++ E+E +FV + L+ ++ K S A
Sbjct: 767 TSIESEKEKKDFVKLFGEYLRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDD 826
Query: 512 DEYSNKIARILQDD 525
++++ L D
Sbjct: 827 EKFAELQTIRLPAD 840
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,031,304
Number of extensions: 1076476
Number of successful extensions: 2684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2579
Number of HSP's successfully gapped: 133
Length of query: 1102
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 998
Effective length of database: 3,798,009
Effective search space: 3790412982
Effective search space used: 3790412982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (27.9 bits)