RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12852
(1102 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 214 bits (545), Expect = 2e-59
Identities = 90/528 (17%), Positives = 177/528 (33%), Gaps = 55/528 (10%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
++ + A L D G KKGDV+A+ PE L A++G + ++I +
Sbjct: 107 RELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEA 166
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIR--------------ESIPDVKLFLLDETKPDLP 614
+ I S+ +I + +I S+ V + + D
Sbjct: 167 VAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQ 226
Query: 615 NLSDLMKTTPASEVKPS---EPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLG-GQVGK 670
DL + P E + D L +YTSG+TG PK + L+ K
Sbjct: 227 EGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFK 286
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAI----RTKFSASNYFRDCAKYK 726
++ GD+ + + G L G++ + + + + K++
Sbjct: 287 YVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 346
Query: 727 CNAGIYIGEMCRYLLASKESEAD-YSHQVVKMIGVG---MRGDIWAKFVKRFHVQ--TII 780
N R L+A + + ++++G + + W + K+ + ++
Sbjct: 347 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 406
Query: 781 EFYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIR 839
+ + TE ++ + P F A++ + P G L I
Sbjct: 407 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEG---HPQEGATEGNLVIT 463
Query: 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
+ PG +G ++ E + F + SGD DE GY
Sbjct: 464 --DSWPGQART----------LFGDHERFE------QTYFSTFKNMYFSGDGARRDEDGY 505
Query: 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIV---- 955
+ R D G + T E+E+ + + E V G+ + G+A +
Sbjct: 506 YWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIP-HAIKGQAIYAYVTLNHG 564
Query: 956 DTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
+ + + + + A P + ++ T + KI + L+
Sbjct: 565 EEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 612
Score = 62.7 bits (152), Expect = 2e-10
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 132 KSVKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCENRP 185
+ ++ + + Q + + +++ + A L D G KKGDV+A+ P
Sbjct: 80 RHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVP 139
Query: 186 EYVGVWLGAAKLGVI 200
E L A++G +
Sbjct: 140 EAAVAMLACARIGAV 154
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 196 bits (499), Expect = 2e-54
Identities = 90/504 (17%), Positives = 183/504 (36%), Gaps = 28/504 (5%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A++ + + ++ L+ G GD +A + N ++ + +G + N L +
Sbjct: 44 AEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKE 103
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNLSDLMKTTPASEV 628
+ + ++ + K ++ P +EAIR + V+ F++ + K L+ +
Sbjct: 104 IAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEA-- 161
Query: 629 KPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHL--LSLGSGDVIYNCLP 686
+ + YT+GTTGLPK + + ++L + +L DV+ +P
Sbjct: 162 -DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVP 220
Query: 687 MYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMCRYLLASKES 746
M+H + L+ + + ++ + + L ES
Sbjct: 221 MFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLES 280
Query: 747 EADYSHQVVKMI-GVGMRGDIWAKFVKRFHVQTIIEFYGATEGN----ANLVNMDNTEGA 801
+ +++ G +R V+ + + YG TE + N V +
Sbjct: 281 TGHRLKTLRRLVVGGSAAPRSLIARFERMGVE-VRQGYGLTETSPVVVQNFVKSHLESLS 339
Query: 802 VGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCKYNQPGMIIGEIKQSDPSRHF 861
TL P+ +++ + D + + G +GE++ P
Sbjct: 340 EEEKLTLKAKTGLPIPLVRLRVA------DEEGRPVPK-----DGKALGEVQLKGPW-IT 387
Query: 862 YGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKGENVSTME 921
GY +E+ + P D +F +GD+ V DE GY+ KDR D + GE +S+++
Sbjct: 388 GGYYGNEEATRS----ALTP-DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD 442
Query: 922 VEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANLPAYARPL 981
+E + + E V + R + + +L L A + P
Sbjct: 443 LENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPD 502
Query: 982 FVRIMKAIEMTGTFKIKKIQLQNE 1005
+ I T K K L+ +
Sbjct: 503 AYVFAEEIPRTSAGKFLKRALREQ 526
Score = 73.4 bits (179), Expect = 6e-14
Identities = 10/86 (11%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 119 MAATNTTLVSEFKKSVKRRPNAPCYYFQD----ETWTIKQIDEYSNKIARILQDDGFKKG 174
M L +++ T ++ + + ++ L+ G G
Sbjct: 6 MMDEELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVG 65
Query: 175 DVLALMCENRPEYVGVWLGAAKLGVI 200
D +A + N ++ + +G +
Sbjct: 66 DRVATLGFNHFRHLEAYFAVPGMGAV 91
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId:
7054]}
Length = 541
Score = 187 bits (475), Expect = 4e-51
Identities = 91/509 (17%), Positives = 198/509 (38%), Gaps = 42/509 (8%)
Query: 509 AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQP 568
A+ E S ++A ++ G + + EN ++ LGA +GV A N ++
Sbjct: 51 AEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERE 110
Query: 569 LVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDETKPDLPNL--------SDLM 620
L++S++ + + VS +I +++ +P ++ ++ ++K D S L
Sbjct: 111 LLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLP 170
Query: 621 KTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQVGKHLL---SLGS 677
+ P + L + +SG+TGLPK +P+ + + + +
Sbjct: 171 PGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIP 230
Query: 678 GDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYKCNAGIYIGEMC 737
I + +P H G+ T+ LI G + + +F + R YK + + + +
Sbjct: 231 DTAILSVVPF-HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLF 289
Query: 738 RYLLASKESEADYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIEFYGATEGNANLVNM 795
+ S + + ++ G + ++ KRFH+ I + YG TE + ++
Sbjct: 290 SFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 349
Query: 796 DNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQPGMIIGEIKQ 854
+ G + ++P F ++ DL + + + G LC+R P +
Sbjct: 350 PEGDDKPGAVGKVVPFF--EAKVV--DLDTGKTLGVNQRGELCVR----GPMI------- 394
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
GY + E+ D + SGD+ DE + + DR ++KG
Sbjct: 395 ------MSGYVNNPEATNA-----LIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKG 443
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKLLVQGLDANL 974
V+ E+E+ + ++ + V G+ D + +++ + K +V + + +
Sbjct: 444 YQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQV 503
Query: 975 PAYAR-PLFVRIMKAIEMTGTFKIKKIQL 1002
+ V + + T K+ ++
Sbjct: 504 TTAKKLRGGVVFVDEVPKGLTGKLDARKI 532
Score = 69.9 bits (170), Expect = 9e-13
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 123 NTTLVSEFKKSVKRRPNAPCY-----YFQDETWTIKQIDEYSNKIARILQDDGFKKGDVL 177
+ T + K++KR P + T + E S ++A ++ G +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 178 ALMCENRPEYVGVWLGAAKLGVI 200
+ EN ++ LGA +GV
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVA 98
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 187 bits (476), Expect = 2e-50
Identities = 92/534 (17%), Positives = 182/534 (34%), Gaps = 57/534 (10%)
Query: 509 AQIDEYSNKIARILQDD-GFKKGDVLALMCENRPEYVGVWLGAAKLGVISALINTNLKKQ 567
++ E ++A++L G +KGD +A+ PE + L +++G I +++
Sbjct: 94 KELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSN 153
Query: 568 PLVHSISTVKSKAIIVSALYY---------PEIEAIRESIPDVKLFLLDETKPDLPNLSD 618
L I+ SK +I + ++ P V+ L+ +
Sbjct: 154 SLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFH 213
Query: 619 L-------MKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG-QVGK 670
+ P P+ + D L +YTSG+TG PK LLG +
Sbjct: 214 APRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMR 273
Query: 671 HLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKF----SASNYFRDCAKYK 726
+ DV + + G L+ G + + + S Y+ ++K
Sbjct: 274 YTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHK 333
Query: 727 CNAGIYIGEMCRYLLASKESEAD-YSHQVVKMIGVG---MRGDIWAKFVKRF--HVQTII 780
R L + +S + +S + ++ +G + ++W + ++ + I+
Sbjct: 334 VTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV 393
Query: 781 EFYGATE-GNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIR 839
+ Y TE G+ + + + P F ++ D + + +
Sbjct: 394 DTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVL--DPNTGEELNTSHAEGVLA 451
Query: 840 CKYNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGY 899
K P + + L+ P Y+ +GD D+ GY
Sbjct: 452 VKAAWPSF-------------ARTIWKNHD---RYLDTYLNPYPGYYFTGDGAAKDKDGY 495
Query: 900 LYFKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGD----------LDGRA 949
++ R D G +ST E+EA I + E V G L ++
Sbjct: 496 IWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKS 555
Query: 950 GMIAIVDTSNQVDLKLLVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
D Q K LV + ++ +A P + ++ + T + KI + L+
Sbjct: 556 SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILR 609
Score = 59.5 bits (143), Expect = 2e-09
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Query: 134 VKRRPNAPCYYF------QDETWTIKQIDEYSNKIARILQDD-GFKKGDVLALMCENRPE 186
+ PN F Q + T K++ E ++A++L G +KGD +A+ PE
Sbjct: 69 ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPE 128
Query: 187 YVGVWLGAAKLGVI 200
+ L +++G I
Sbjct: 129 AIITLLAISRIGAI 142
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 175 bits (443), Expect = 4e-47
Identities = 90/517 (17%), Positives = 178/517 (34%), Gaps = 43/517 (8%)
Query: 490 ASNARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
+ A +N + +++ +N++ARI + G K ++ +M E +
Sbjct: 30 EEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 89
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
L K G I+ K+ + + + +++ ++ I I+
Sbjct: 90 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF---------- 139
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGG 666
+ + P +++D IYTSGTTG PK ++ + +
Sbjct: 140 ----NGQVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLK 195
Query: 667 QVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAKYK 726
++ L++ D I + A + AL+ G+S+ I K + +++ +
Sbjct: 196 VFFENSLNVTEKDRIGQFASISFDA-SVWEMFMALLTGASLYIILKDTINDFVKFEQYIN 254
Query: 727 CNAGIYIGEMCRYLLASKESEADYSHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGAT 786
I Y++ ++ G + K+ ++ T
Sbjct: 255 QKEITVITLPPTYVVHLDPERILSIQTLI-TAGSATSPSLVNKWKEKVTYINAYGPTETT 313
Query: 787 EGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQP 845
V T G I + I Q + G LCI
Sbjct: 314 ICATTWVATKETIGHSVPIGAPIQNT-----QIYIVDENLQLKSVGEAGELCIG----GE 364
Query: 846 GMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDR 905
G+ G Y + + + +K ++N F PG+K + +GD G + + R
Sbjct: 365 GLARG-----------Y-WKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGR 412
Query: 906 TGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLKL 965
+ + +G V EVE+ + K++ +E V K D + + A + + L+
Sbjct: 413 IDNQVKIRGHRVELEEVESILLKHMYISETAVSVHK--DHQEQPYLCAYFVSEKHIPLEQ 470
Query: 966 LVQGLDANLPAYARPLFVRIMKAIEMTGTFKIKKIQL 1002
L Q LP Y P + + + +T KI + QL
Sbjct: 471 LRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 507
Score = 84.6 bits (208), Expect = 2e-17
Identities = 19/78 (24%), Positives = 37/78 (47%)
Query: 123 NTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCE 182
+ T+ F++ V +RPN ++E T +++ +N++ARI + G K ++ +M E
Sbjct: 22 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMME 81
Query: 183 NRPEYVGVWLGAAKLGVI 200
+ L K G
Sbjct: 82 KSIDLFIGILAVLKAGGA 99
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 160 bits (404), Expect = 5e-42
Identities = 88/520 (16%), Positives = 167/520 (32%), Gaps = 35/520 (6%)
Query: 492 NARSTNDAAATTVKNLE---AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGVWL 548
A D A T N ++D ++++A Q G ++ D + + N E+ V
Sbjct: 34 RAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIF 93
Query: 549 GAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLLDE 608
+LG + + + + + ++ A I+ Y KL L
Sbjct: 94 ALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKN 153
Query: 609 TKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVLLGGQV 668
L +E +++SD + G+TGL K + + +
Sbjct: 154 IIVAGEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKR 213
Query: 669 GKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALIL-GSSIAIRTKFSASNYFRDCAKYKC 727
+ L V LPM H+ + ++ G + + S + F + K
Sbjct: 214 SVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKV 273
Query: 728 NAGIYIGEMCRYLLASKESEADY--SHQVVKMIGVGMRGDIWAKFVKRFHVQTIIEFYGA 785
+ + + + S D S QV+++ G + + F F A
Sbjct: 274 TITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMA 333
Query: 786 TEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTG-LCIRCKYNQ 844
D E V + P + ++ ++ +TG L R
Sbjct: 334 EGLVNYTRLDDPEEIIVNTQGKPMS----PYDESRVWDDHDRDVKPGETGHLLTR----G 385
Query: 845 PGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKD 904
P I G K + + + D ++ +GD++ + GY+ +
Sbjct: 386 PYTIRGYYKAEEHNAASF------------------TEDGFYRTGDIVRLTRDGYIVVEG 427
Query: 905 RTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQVDLK 964
R D GE V+ EVE + + + + + G + I+
Sbjct: 428 RAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP-DQFLGERSCVFIIPRDEAPKAA 486
Query: 965 LLVQGL-DANLPAYARPLFVRIMKAIEMTGTFKIKKIQLQ 1003
L L + L AY P V +++ TG K+ K L+
Sbjct: 487 ELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALR 526
Score = 81.2 bits (199), Expect = 2e-16
Identities = 12/79 (15%), Positives = 31/79 (39%)
Query: 122 TNTTLVSEFKKSVKRRPNAPCYYFQDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMC 181
T + + + + W+ +++D ++++A Q G ++ D + +
Sbjct: 23 AGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQL 82
Query: 182 ENRPEYVGVWLGAAKLGVI 200
N E+ V +LG +
Sbjct: 83 PNIKEFFEVIFALFRLGAL 101
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 155 bits (391), Expect = 2e-40
Identities = 96/525 (18%), Positives = 175/525 (33%), Gaps = 45/525 (8%)
Query: 492 NARSTNDAAATTVKNLE-----AQIDEYSNKIARILQDDGFKKGDVLALMCENRPEYVGV 546
A D A V A++ +A L DG + +A++ N + V
Sbjct: 11 AATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIA 70
Query: 547 WLGAAKLGVISALINTNLKKQPLVHSISTVKSKAIIVSALYYPEIEAIRESIPDVKLFLL 606
L +LG + AL+N LK L I + A ++ A+ +AI +S ++ L
Sbjct: 71 ILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVI-AVGRQVADAIFQSGSGARIIFL 129
Query: 607 DETKPDLPNLSDLMKTTPASEVKPSEPLQTSDSLLYIYTSGTTGLPKAAIMPNFKVL--L 664
+ D S + + YTSGTTGLPKAAI+P +
Sbjct: 130 GDLVRDGEPYS-------YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRV 182
Query: 665 GGQVGKHLLSLGSGDVIYNCLPMYHSAGGLIGTIPALILGSSIAIRTKFSASNYFRDCAK 724
+ L G +V+ +P+YH G + AL L + + +F + + +
Sbjct: 183 LFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQ 242
Query: 725 YKCNAGIYIGEMCRYLLASKESEA-DYSHQVVKMIGVG--MRGDIWAKFVKRFHVQTIIE 781
+ + L A+ ++ + D + V + +
Sbjct: 243 EQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN 302
Query: 782 FYGATEGNANLVNMDNTEGAVGIIPTLLPTFLHPVAIIQFDLVENQPIRDPKTGLCIRCK 841
YG TE +L G F V I++ ++ + + + G I
Sbjct: 303 IYGTTEAMNSLYMRQPKTGTEMAPG-----FFSEVRIVRIGGGVDEIVANGEEGELIVAA 357
Query: 842 YNQPGMIIGEIKQSDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLY 901
+ F GY ++ ++ + + G ++ + D+ V G +
Sbjct: 358 SDS---------------AFVGYLNQPQATAE----KLQDG--WYRTSDVAVWTPEGTVR 396
Query: 902 FKDRTGDTYRWKGENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIAIVDTSNQV 961
R D GEN+ E+E + TE V G+ + +
Sbjct: 397 ILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETL 456
Query: 962 DLKLLVQGLDAN-LPAYARPLFVRIMKAIEMTGTFKIKKIQLQNE 1005
L ++ L + RP I+ + K+ + QL +
Sbjct: 457 SADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
Score = 74.7 bits (182), Expect = 2e-14
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 125 TLVSEFKKSVKRRPNAPCYYF--QDETWTIKQIDEYSNKIARILQDDGFKKGDVLALMCE 182
T+ +++ R P+ + T ++ +A L DG + +A++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 183 NRPEYVGVWLGAAKLGVI 200
N + V L +LG +
Sbjct: 63 NSADVVIAILALHRLGAV 80
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein
TDRKH {Human (Homo sapiens) [TaxId: 9606]}
Length = 97
Score = 66.5 bits (162), Expect = 6e-14
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 228 HRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMILF 287
+L KL E+ + G + A + R +V T ++ + F
Sbjct: 3 LQLDKLVNEMTQHYENSVPEDLTVH--VGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 60
Query: 288 VDYSDKQEIPYEDLVPIHRPQLISNLPFQAIECYLAGV 325
VD+ D + P +DL + +LPFQAIEC LA +
Sbjct: 61 VDFGDNGDCPLKDLRAL--RSDFLSLPFQAIECSLARI 96
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 90
Score = 59.5 bits (144), Expect = 1e-11
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 4/92 (4%)
Query: 226 ELHRLMKLNKEIGVDVSKTSSRYSKEQCHPGLLCLARSDDKSGYNRVQVTDTSDSELAMI 285
+ +LM+ + D++ G C+A+ D + R +V +
Sbjct: 2 QFQKLME---NMRNDIASHPPVEGSYAPRRGEFCIAKFVDGE-WYRARVEKVESPAKIHV 57
Query: 286 LFVDYSDKQEIPYEDLVPIHRPQLISNLPFQA 317
++DY +++ +P L + LP QA
Sbjct: 58 FYIDYGNREVLPSTRLGTLSPAFSTRVLPAQA 89
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 60
Score = 42.5 bits (100), Expect = 7e-06
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 255 PGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPIH 305
PG C A + + + R +V S A++ F DY + +E+ ++ P+
Sbjct: 5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQ 56
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human
(Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 39.0 bits (91), Expect = 9e-05
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 255 PGLLCLARSDDKSGYNRVQVTD-TSDSELAMILFVDYSDKQEIPYEDLVPI 304
G C A + + E ++++ Y +++E DL+
Sbjct: 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56
>d1dc1a_ c.52.1.11 (A:) Restriction endonuclease BsobI {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 319
Score = 32.2 bits (73), Expect = 0.36
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 855 SDPSRHFYGYADKKESQKKILENVFKPGDKYFLSGDMMVMDELGYLYFKDRTGDTYRWKG 914
SD ++ F DKKES ++EN +P + F+ DEL + Y + GD+
Sbjct: 75 SDKAKKFLTEDDKKESINNLIENFLEPAGEEFI-------DELIFRYLLFQ-GDSLGGTM 126
Query: 915 ENVSTMEVEATISKYLPYTEFTVYGVKVGDLDGRAGMIA--IVDTSNQVDLKLLVQGLDA 972
N++ + +++ + + + LD R + + +L+ +G+
Sbjct: 127 RNIAGALAQQKLTRAIISA-LDIANIPYKWLDSRDKKYTNWMDKPEDDYELETFAKGISW 185
Query: 973 NLPAYARPL 981
+ R L
Sbjct: 186 TINGKHRTL 194
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.6 bits (63), Expect = 1.4
Identities = 9/69 (13%), Positives = 16/69 (23%), Gaps = 9/69 (13%)
Query: 310 ISNLPFQAIECYLAGVEPLEGVWSQAAYDFLDDFTRLFARVV---------SVKLHGEET 360
+ LP++A E + D A V ++
Sbjct: 20 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 79
Query: 361 GGRRYAVEL 369
R + L
Sbjct: 80 QHRYVELFL 88
>d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus
[TaxId: 2714]}
Length = 105
Score = 27.4 bits (61), Expect = 3.8
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 6/50 (12%)
Query: 130 FKKSVKRRPNAPCYYFQDE------TWTIKQIDEYSNKIARILQDDGFKK 173
K R Y D + I YS + A L+D G
Sbjct: 16 LKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDI 65
>d1svda2 d.58.9.1 (A:16-142) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Archaeon Halothiobacillus
neapolitanus [TaxId: 927]}
Length = 127
Score = 27.3 bits (61), Expect = 4.5
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 323 AGVEPLE-----------GVWSQAAYDFLDDFTRLFARVVSVK-LHGEETGGRRYAVELF 370
GV+ E G W+ D L D R ++ + G++ +
Sbjct: 24 PGVDREEAAAAVAAESSTGTWTTVWTDLLTDMDYYKGRAYRIEDVPGDDAAFYAFIAYPI 83
Query: 371 DLDEELNI 378
DL EE ++
Sbjct: 84 DLFEEGSV 91
>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525,
C-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 93
Score = 26.3 bits (58), Expect = 6.7
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
Query: 168 DDGFKKGDVLALMCENRPEYVGVWLGAAKLGVISKLSNVVWLAQLLGKKMVHFKGIILE- 226
+ F +GDV+A + V V G A++ + L +L +K +G +
Sbjct: 29 EGSFTRGDVVAALYHETRTPVMV--GVAEV-------DSSALEKLYREKA---RGRAVRR 76
Query: 227 LHR----LMKLNKEIG 238
+HR L +L +E+G
Sbjct: 77 VHRLGDALWELAQEVG 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,131,324
Number of extensions: 201556
Number of successful extensions: 564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 541
Number of HSP's successfully gapped: 33
Length of query: 1102
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1007
Effective length of database: 1,103,246
Effective search space: 1110968722
Effective search space used: 1110968722
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)