Query psy12853
Match_columns 137
No_of_seqs 120 out of 1273
Neff 8.2
Searched_HMMs 29240
Date Fri Aug 16 21:28:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12853.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12853hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 1.2E-19 3.9E-24 108.0 2.0 45 91-135 1-47 (60)
2 2ct7_A Ring finger protein 31; 99.4 1.8E-13 6.3E-18 86.8 2.0 59 30-88 7-68 (86)
3 2jmo_A Parkin; IBR, E3 ligase, 99.2 2E-12 6.9E-17 80.9 0.6 56 30-86 8-70 (80)
4 1wd2_A Ariadne-1 protein homol 98.6 1.4E-08 5E-13 59.8 2.4 43 45-87 3-47 (60)
5 2ct7_A Ring finger protein 31; 98.0 5.9E-06 2E-10 51.8 4.1 38 95-132 24-61 (86)
6 2jmo_A Parkin; IBR, E3 ligase, 97.9 6.1E-06 2.1E-10 51.1 2.8 40 95-134 24-70 (80)
7 4ap4_A E3 ubiquitin ligase RNF 96.8 0.00034 1.2E-08 46.1 1.0 87 47-134 6-111 (133)
8 2jrp_A Putative cytoplasmic pr 96.7 0.0019 6.4E-08 39.8 3.8 60 49-135 3-64 (81)
9 3j20_Y 30S ribosomal protein S 95.8 0.0064 2.2E-07 34.0 2.5 31 46-76 17-47 (50)
10 3lrq_A E3 ubiquitin-protein li 94.9 0.0058 2E-07 38.7 0.6 49 48-108 22-70 (100)
11 2ecy_A TNF receptor-associated 94.9 0.023 7.9E-07 32.8 3.0 51 46-109 13-63 (66)
12 1pft_A TFIIB, PFTFIIBN; N-term 94.8 0.032 1.1E-06 30.8 3.4 29 48-76 5-34 (50)
13 3vk6_A E3 ubiquitin-protein li 94.4 0.0037 1.3E-07 40.0 -1.3 51 49-111 2-52 (101)
14 1iym_A EL5; ring-H2 finger, ub 94.3 0.063 2.2E-06 29.5 4.0 49 48-106 5-53 (55)
15 2ysl_A Tripartite motif-contai 94.3 0.053 1.8E-06 31.7 3.8 53 46-109 18-70 (73)
16 2jrp_A Putative cytoplasmic pr 94.1 0.052 1.8E-06 33.3 3.5 35 97-133 3-42 (81)
17 4ap4_A E3 ubiquitin ligase RNF 94.0 0.0067 2.3E-07 39.6 -0.7 57 45-109 69-126 (133)
18 2jne_A Hypothetical protein YF 93.9 0.053 1.8E-06 34.3 3.3 24 97-122 33-56 (101)
19 2ct2_A Tripartite motif protei 93.9 0.02 6.8E-07 34.8 1.4 57 46-109 13-69 (88)
20 1e4u_A Transcriptional repress 93.9 0.059 2E-06 32.6 3.4 55 46-109 9-63 (78)
21 3ng2_A RNF4, snurf, ring finge 93.6 0.016 5.3E-07 33.8 0.5 56 46-109 8-64 (71)
22 2djb_A Polycomb group ring fin 93.4 0.029 1E-06 33.0 1.4 51 46-109 13-63 (72)
23 2k4x_A 30S ribosomal protein S 93.3 0.059 2E-06 30.6 2.5 31 46-76 16-46 (55)
24 1z60_A TFIIH basal transcripti 93.2 0.044 1.5E-06 31.6 1.9 44 49-103 16-59 (59)
25 1pft_A TFIIB, PFTFIIBN; N-term 93.0 0.12 4.1E-06 28.4 3.5 29 96-124 5-34 (50)
26 2d8t_A Dactylidin, ring finger 92.9 0.086 3E-06 30.8 3.0 48 47-108 14-61 (71)
27 2ecm_A Ring finger and CHY zin 92.7 0.045 1.6E-06 30.1 1.5 49 48-106 5-53 (55)
28 1x4j_A Ring finger protein 38; 92.6 0.029 9.9E-07 33.2 0.6 54 47-111 22-75 (75)
29 1bor_A Transcription factor PM 92.4 0.22 7.7E-06 27.7 4.2 45 48-109 6-50 (56)
30 2k4x_A 30S ribosomal protein S 92.3 0.084 2.9E-06 29.9 2.3 30 95-124 17-46 (55)
31 1g25_A CDK-activating kinase a 92.2 0.037 1.3E-06 31.8 0.7 52 49-109 4-56 (65)
32 2jr6_A UPF0434 protein NMA0874 92.1 0.14 4.7E-06 30.4 3.1 30 95-124 7-36 (68)
33 2ect_A Ring finger protein 126 92.1 0.073 2.5E-06 31.6 1.9 52 46-108 13-64 (78)
34 2y43_A E3 ubiquitin-protein li 91.9 0.066 2.3E-06 33.4 1.6 48 48-108 22-69 (99)
35 2egp_A Tripartite motif-contai 91.9 0.097 3.3E-06 30.9 2.3 56 46-108 10-65 (79)
36 2ckl_A Polycomb group ring fin 91.8 0.083 2.8E-06 33.5 2.1 49 48-109 15-63 (108)
37 1jm7_B BARD1, BRCA1-associated 91.8 0.15 5.2E-06 32.8 3.4 46 48-108 22-67 (117)
38 2yur_A Retinoblastoma-binding 91.5 0.098 3.4E-06 30.9 2.0 52 46-108 13-64 (74)
39 3ztg_A E3 ubiquitin-protein li 91.3 0.076 2.6E-06 32.5 1.5 50 46-106 11-60 (92)
40 2jne_A Hypothetical protein YF 91.2 0.17 5.7E-06 32.1 2.9 45 49-112 33-77 (101)
41 3lrq_A E3 ubiquitin-protein li 91.2 0.068 2.3E-06 33.6 1.2 33 96-133 22-54 (100)
42 1weo_A Cellulose synthase, cat 91.2 0.14 4.9E-06 31.9 2.6 60 47-113 15-75 (93)
43 3j20_Y 30S ribosomal protein S 91.1 0.15 5.1E-06 28.3 2.4 30 95-124 18-47 (50)
44 2ea6_A Ring finger protein 4; 91.0 0.06 2.1E-06 30.9 0.7 55 46-108 13-68 (69)
45 2xeu_A Ring finger protein 4; 90.5 0.031 1E-06 31.7 -0.9 53 49-109 4-57 (64)
46 4ic3_A E3 ubiquitin-protein li 90.5 0.093 3.2E-06 31.1 1.2 42 49-108 25-67 (74)
47 2ecw_A Tripartite motif-contai 90.0 0.054 1.8E-06 32.4 -0.1 56 46-109 17-72 (85)
48 1vq8_Z 50S ribosomal protein L 90.0 0.048 1.6E-06 33.7 -0.4 31 47-77 26-56 (83)
49 3h0g_I DNA-directed RNA polyme 89.6 0.26 8.8E-06 31.9 2.9 31 47-77 3-37 (113)
50 2ep4_A Ring finger protein 24; 89.4 0.082 2.8E-06 31.0 0.4 52 46-108 13-64 (74)
51 1gh9_A 8.3 kDa protein (gene M 89.3 0.19 6.5E-06 30.0 1.9 33 48-82 4-36 (71)
52 2ecv_A Tripartite motif-contai 89.0 0.11 3.8E-06 30.9 0.7 56 46-109 17-72 (85)
53 1vq8_Z 50S ribosomal protein L 89.0 0.18 6.2E-06 31.0 1.7 30 96-125 27-56 (83)
54 1twf_I B12.6, DNA-directed RNA 88.9 0.22 7.5E-06 32.7 2.2 30 47-76 3-36 (122)
55 2csy_A Zinc finger protein 183 88.9 0.15 5.1E-06 30.5 1.3 48 46-107 13-60 (81)
56 4ayc_A E3 ubiquitin-protein li 88.8 0.1 3.5E-06 34.7 0.6 46 49-108 54-99 (138)
57 3qt1_I DNA-directed RNA polyme 88.8 0.22 7.4E-06 33.4 2.1 33 44-76 20-56 (133)
58 1t1h_A Gspef-atpub14, armadill 88.7 0.32 1.1E-05 28.7 2.7 50 46-108 6-55 (78)
59 2ckl_B Ubiquitin ligase protei 88.6 0.12 4.1E-06 35.3 0.8 48 48-107 54-101 (165)
60 2pk7_A Uncharacterized protein 88.4 0.35 1.2E-05 28.7 2.6 29 48-76 8-36 (69)
61 2jr6_A UPF0434 protein NMA0874 88.3 0.3 1E-05 28.8 2.3 29 48-76 8-36 (68)
62 2hf1_A Tetraacyldisaccharide-1 88.3 0.32 1.1E-05 28.7 2.4 29 48-76 8-36 (68)
63 2js4_A UPF0434 protein BB2007; 88.2 0.35 1.2E-05 28.7 2.6 29 48-76 8-36 (70)
64 3l11_A E3 ubiquitin-protein li 88.2 0.19 6.5E-06 32.1 1.5 47 48-107 15-61 (115)
65 2jun_A Midline-1; B-BOX, TRIM, 88.0 0.68 2.3E-05 28.7 4.0 78 49-136 4-94 (101)
66 2js4_A UPF0434 protein BB2007; 88.0 0.53 1.8E-05 27.9 3.3 30 95-124 7-36 (70)
67 2pk7_A Uncharacterized protein 87.9 0.6 2.1E-05 27.6 3.5 30 95-124 7-36 (69)
68 2ecl_A Ring-box protein 2; RNF 87.9 0.21 7.3E-06 30.0 1.5 52 49-108 16-76 (81)
69 1iym_A EL5; ring-H2 finger, ub 87.9 0.45 1.6E-05 25.8 2.9 38 96-135 5-42 (55)
70 2hf1_A Tetraacyldisaccharide-1 87.5 0.46 1.6E-05 28.0 2.8 30 95-124 7-36 (68)
71 1jm7_A BRCA1, breast cancer ty 87.1 0.14 4.8E-06 32.4 0.4 51 48-109 21-71 (112)
72 1dl6_A Transcription factor II 86.3 0.52 1.8E-05 26.8 2.5 29 48-76 11-40 (58)
73 1v87_A Deltex protein 2; ring- 86.1 0.19 6.4E-06 32.0 0.6 60 49-111 26-97 (114)
74 2ysj_A Tripartite motif-contai 86.1 0.22 7.5E-06 28.1 0.8 34 95-134 19-52 (63)
75 2ecj_A Tripartite motif-contai 86.0 0.77 2.6E-05 25.1 3.1 46 46-102 13-58 (58)
76 2jny_A Uncharacterized BCR; st 85.9 0.52 1.8E-05 27.7 2.4 29 48-76 10-38 (67)
77 2djb_A Polycomb group ring fin 85.9 0.24 8.1E-06 28.9 0.9 33 95-132 14-46 (72)
78 3fl2_A E3 ubiquitin-protein li 85.8 0.11 3.9E-06 33.7 -0.6 48 48-108 52-99 (124)
79 2jny_A Uncharacterized BCR; st 84.5 1 3.4E-05 26.5 3.2 30 95-124 9-38 (67)
80 3h0g_I DNA-directed RNA polyme 84.4 0.81 2.8E-05 29.5 3.1 29 96-124 4-36 (113)
81 2kiz_A E3 ubiquitin-protein li 84.2 0.73 2.5E-05 26.3 2.5 35 95-132 13-47 (69)
82 2ct2_A Tripartite motif protei 83.7 0.29 9.9E-06 29.4 0.6 37 95-133 14-50 (88)
83 2kpi_A Uncharacterized protein 83.4 1.3 4.6E-05 24.9 3.3 28 95-124 9-38 (56)
84 1wfl_A Zinc finger protein 216 83.3 0.63 2.2E-05 27.9 2.0 27 96-127 25-51 (74)
85 2l0b_A E3 ubiquitin-protein li 82.8 0.48 1.6E-05 29.0 1.4 50 47-107 39-88 (91)
86 1rmd_A RAG1; V(D)J recombinati 82.4 0.37 1.3E-05 30.8 0.7 49 48-109 23-71 (116)
87 1wfh_A Zinc finger (AN1-like) 82.2 1.1 3.7E-05 26.1 2.6 29 94-127 13-41 (64)
88 2yho_A E3 ubiquitin-protein li 82.0 0.55 1.9E-05 28.1 1.4 42 49-108 19-61 (79)
89 2ecg_A Baculoviral IAP repeat- 81.7 0.43 1.5E-05 28.1 0.8 44 48-109 25-69 (75)
90 1chc_A Equine herpes virus-1 r 81.7 0.75 2.6E-05 26.1 1.9 25 96-120 5-32 (68)
91 2y43_A E3 ubiquitin-protein li 81.1 0.52 1.8E-05 29.1 1.1 33 96-133 22-54 (99)
92 1twf_I B12.6, DNA-directed RNA 80.9 0.81 2.8E-05 30.0 2.0 29 96-124 4-36 (122)
93 2ckl_A Polycomb group ring fin 80.8 0.59 2E-05 29.4 1.3 32 96-132 15-46 (108)
94 2ckl_B Ubiquitin ligase protei 80.4 0.6 2E-05 31.7 1.3 31 97-132 55-85 (165)
95 1wg2_A Zinc finger (AN1-like) 80.3 1 3.5E-05 26.3 2.0 28 95-127 14-41 (64)
96 2ecn_A Ring finger protein 141 79.7 1.1 3.6E-05 25.6 2.1 33 95-134 14-46 (70)
97 4ayc_A E3 ubiquitin-protein li 78.0 1 3.6E-05 29.6 1.9 31 98-134 55-85 (138)
98 1wfk_A Zinc finger, FYVE domai 77.7 2.6 8.9E-05 25.8 3.5 35 95-131 8-42 (88)
99 2akl_A PHNA-like protein PA012 77.7 1.7 5.7E-05 28.9 2.7 30 46-76 25-54 (138)
100 2ea5_A Cell growth regulator w 77.5 0.82 2.8E-05 26.5 1.1 26 71-108 32-58 (68)
101 1wii_A Hypothetical UPF0222 pr 77.4 1.5 5.2E-05 26.9 2.3 17 108-124 41-57 (85)
102 2c2l_A CHIP, carboxy terminus 77.2 1.8 6.1E-05 31.3 3.1 52 44-108 204-255 (281)
103 2yw8_A RUN and FYVE domain-con 76.6 2.5 8.6E-05 25.4 3.2 37 44-82 15-51 (82)
104 3knv_A TNF receptor-associated 76.1 0.8 2.7E-05 30.6 0.9 32 96-133 31-62 (141)
105 3u5c_f 40S ribosomal protein S 76.1 1.5 5.3E-05 29.7 2.3 33 46-78 116-150 (152)
106 1x4u_A Zinc finger, FYVE domai 75.6 2.7 9.2E-05 25.4 3.2 37 44-82 10-46 (84)
107 3fl2_A E3 ubiquitin-protein li 75.6 0.92 3.2E-05 29.2 1.1 30 97-132 53-82 (124)
108 2vje_A E3 ubiquitin-protein li 75.1 0.48 1.7E-05 27.1 -0.4 30 71-108 27-57 (64)
109 3vk6_A E3 ubiquitin-protein li 74.9 0.81 2.8E-05 29.1 0.6 36 98-133 3-48 (101)
110 1z6u_A NP95-like ring finger p 74.6 0.5 1.7E-05 31.9 -0.5 49 48-109 78-126 (150)
111 2vje_B MDM4 protein; proto-onc 74.5 0.46 1.6E-05 27.1 -0.6 30 71-108 26-56 (63)
112 1wfp_A Zinc finger (AN1-like) 74.4 1.9 6.5E-05 25.8 2.1 28 95-127 24-51 (74)
113 3hct_A TNF receptor-associated 74.4 0.91 3.1E-05 29.0 0.8 31 96-132 18-48 (118)
114 1vk6_A NADH pyrophosphatase; 1 73.7 2.3 7.9E-05 31.4 2.9 29 46-74 105-133 (269)
115 3qt1_I DNA-directed RNA polyme 73.7 1.4 4.7E-05 29.4 1.5 32 93-124 21-56 (133)
116 2ecl_A Ring-box protein 2; RNF 73.5 1.9 6.4E-05 25.7 2.0 15 120-134 48-62 (81)
117 1zbd_B Rabphilin-3A; G protein 73.0 0.86 3E-05 30.4 0.4 39 45-84 52-90 (134)
118 1qxf_A GR2, 30S ribosomal prot 72.1 2.9 9.9E-05 24.4 2.5 30 48-77 7-37 (66)
119 1twf_L ABC10-alpha, DNA-direct 72.0 1.5 5E-05 26.0 1.2 11 50-60 30-40 (70)
120 4esj_A Type-2 restriction enzy 72.0 2.6 9E-05 30.9 2.8 35 48-82 34-72 (257)
121 1wff_A Riken cDNA 2810002D23 p 71.8 2.7 9.4E-05 25.8 2.4 29 95-127 24-52 (85)
122 1z2q_A LM5-1; membrane protein 71.6 3.3 0.00011 25.0 2.8 37 44-82 17-53 (84)
123 2akl_A PHNA-like protein PA012 71.3 3 0.0001 27.7 2.7 29 95-124 26-54 (138)
124 3t6p_A Baculoviral IAP repeat- 71.1 1.7 5.8E-05 33.4 1.7 43 49-109 296-339 (345)
125 3hcs_A TNF receptor-associated 70.4 1.3 4.5E-05 30.1 0.9 31 96-132 18-48 (170)
126 1wim_A KIAA0161 protein; ring 70.0 0.34 1.2E-05 29.8 -2.0 55 48-105 5-61 (94)
127 1joc_A EEA1, early endosomal a 68.7 3 0.0001 27.3 2.3 37 44-82 65-101 (125)
128 3m7n_A Putative uncharacterize 68.6 2.9 9.8E-05 29.0 2.3 26 96-123 140-165 (179)
129 3u5c_f 40S ribosomal protein S 67.6 3 0.0001 28.2 2.2 32 95-126 117-150 (152)
130 2y1n_A E3 ubiquitin-protein li 67.1 1.8 6E-05 34.0 1.0 48 48-108 332-379 (389)
131 3pwf_A Rubrerythrin; non heme 65.4 5.1 0.00018 27.6 3.1 25 47-74 137-161 (170)
132 3j20_W 30S ribosomal protein S 65.2 4.8 0.00016 23.3 2.4 30 48-77 15-45 (63)
133 2csz_A Synaptotagmin-like prot 65.1 3.7 0.00013 24.7 2.0 39 45-84 22-60 (76)
134 2xzm_6 RPS27E; ribosome, trans 63.5 5.1 0.00018 24.3 2.4 29 49-77 33-62 (81)
135 1nee_A EIF-2-beta, probable tr 63.1 6.9 0.00024 26.1 3.3 46 22-75 84-132 (138)
136 2lli_A Protein AIR2; RNA surve 62.4 17 0.00057 23.3 5.1 9 123-131 106-114 (124)
137 1dvp_A HRS, hepatocyte growth 62.2 5.7 0.0002 28.2 3.0 33 97-131 162-194 (220)
138 3t7l_A Zinc finger FYVE domain 62.1 5.1 0.00017 24.5 2.3 35 47-83 19-53 (90)
139 2d74_B Translation initiation 61.5 5.4 0.00018 27.0 2.5 36 48-83 104-142 (148)
140 2kdx_A HYPA, hydrogenase/ureas 61.2 3 0.0001 26.8 1.2 15 46-60 71-85 (119)
141 1k81_A EIF-2-beta, probable tr 60.5 4.7 0.00016 20.5 1.6 26 50-75 2-30 (36)
142 3u5c_b RP61, YS20, 40S ribosom 59.5 6 0.00021 24.1 2.2 30 48-77 34-64 (82)
143 1y02_A CARP2, FYVE-ring finger 59.5 4.1 0.00014 26.6 1.6 37 45-83 16-52 (120)
144 2zet_C Melanophilin; complex, 59.3 7.6 0.00026 26.3 3.0 39 47-87 67-105 (153)
145 3iz6_X 40S ribosomal protein S 59.2 6.1 0.00021 24.2 2.2 30 48-77 36-66 (86)
146 2ct0_A Non-SMC element 1 homol 59.1 11 0.00037 22.2 3.4 51 46-107 13-63 (74)
147 2xzm_9 RPS31E; ribosome, trans 58.4 5.7 0.0002 28.0 2.3 32 47-78 112-143 (189)
148 1we9_A PHD finger family prote 56.6 9.2 0.00031 21.5 2.7 60 46-110 4-63 (64)
149 1ee8_A MUTM (FPG) protein; bet 55.8 6.5 0.00022 29.0 2.4 26 96-121 235-262 (266)
150 1vfy_A Phosphatidylinositol-3- 55.1 5.2 0.00018 23.4 1.4 32 97-130 12-43 (73)
151 3a43_A HYPD, hydrogenase nicke 54.5 3.4 0.00012 27.5 0.6 10 96-105 107-116 (139)
152 4a0k_B E3 ubiquitin-protein li 53.5 2.8 9.5E-05 27.2 0.0 23 111-134 76-98 (117)
153 3h0g_L DNA-directed RNA polyme 53.5 5.1 0.00018 23.1 1.2 12 95-106 37-48 (63)
154 3dpl_R Ring-box protein 1; ubi 53.3 6.6 0.00022 24.8 1.8 23 111-134 65-87 (106)
155 3m7n_A Putative uncharacterize 53.2 8.5 0.00029 26.5 2.5 26 48-75 140-165 (179)
156 3u6p_A Formamidopyrimidine-DNA 52.8 6 0.00021 29.3 1.7 26 96-121 245-272 (273)
157 2xzf_A Formamidopyrimidine-DNA 52.8 6 0.00021 29.2 1.7 26 96-121 242-269 (271)
158 1k82_A Formamidopyrimidine-DNA 52.4 6.1 0.00021 29.1 1.7 26 96-121 240-267 (268)
159 1k3x_A Endonuclease VIII; hydr 51.3 6.6 0.00022 28.9 1.7 27 95-121 233-261 (262)
160 3k1f_M Transcription initiatio 51.2 11 0.00039 26.4 2.8 30 47-76 20-52 (197)
161 2kre_A Ubiquitin conjugation f 51.0 12 0.00039 23.2 2.6 50 45-108 26-75 (100)
162 2xzm_9 RPS31E; ribosome, trans 50.8 6.9 0.00024 27.5 1.7 31 96-126 113-143 (189)
163 1ffk_W Ribosomal protein L37AE 49.4 7.2 0.00025 23.2 1.4 33 44-76 23-55 (73)
164 3k7a_M Transcription initiatio 49.3 9.4 0.00032 29.1 2.4 29 48-76 21-52 (345)
165 1dxg_A Desulforedoxin; non-hem 48.5 9.5 0.00033 19.1 1.6 13 96-108 6-18 (36)
166 4ayb_P DNA-directed RNA polyme 47.6 10 0.00035 20.5 1.7 11 96-106 23-33 (48)
167 3zyq_A Hepatocyte growth facto 47.0 11 0.00038 26.9 2.3 31 50-82 166-196 (226)
168 1qyp_A RNA polymerase II; tran 46.3 21 0.00072 19.6 3.0 8 97-104 16-23 (57)
169 3htk_C E3 SUMO-protein ligase 45.2 8.6 0.00029 28.6 1.5 50 48-108 181-232 (267)
170 2apo_B Ribosome biogenesis pro 44.9 11 0.00038 21.5 1.6 23 47-75 5-27 (60)
171 3jyw_9 60S ribosomal protein L 43.8 6 0.0002 23.5 0.4 29 48-76 26-54 (72)
172 2e9h_A EIF-5, eukaryotic trans 43.6 20 0.00067 24.5 3.0 29 48-76 103-136 (157)
173 2kr4_A Ubiquitin conjugation f 43.5 12 0.00042 22.2 1.8 50 45-108 11-60 (85)
174 3cng_A Nudix hydrolase; struct 42.7 17 0.00058 24.6 2.7 26 48-73 3-32 (189)
175 1vd4_A Transcription initiatio 41.8 12 0.00042 20.3 1.5 13 64-76 37-49 (62)
176 3cc2_Z 50S ribosomal protein L 41.5 4.6 0.00016 26.2 -0.4 32 46-77 58-89 (116)
177 2g2k_A EIF-5, eukaryotic trans 41.2 18 0.00061 25.0 2.6 30 48-77 96-130 (170)
178 3vth_A Hydrogenase maturation 41.2 6 0.00021 33.7 0.2 66 43-108 106-195 (761)
179 3mpx_A FYVE, rhogef and PH dom 40.2 6 0.0002 30.6 0.0 58 48-108 375-432 (434)
180 2k5r_A Uncharacterized protein 40.0 14 0.00049 23.1 1.7 12 49-60 9-20 (97)
181 1nui_A DNA primase/helicase; z 39.4 19 0.00065 25.8 2.6 25 96-123 14-42 (255)
182 2lcq_A Putative toxin VAPC6; P 38.7 16 0.00054 24.5 2.0 13 97-109 149-161 (165)
183 1tfi_A Transcriptional elongat 38.3 33 0.0011 18.5 2.9 10 115-124 38-47 (50)
184 3cw2_K Translation initiation 37.8 7 0.00024 26.1 0.0 30 46-75 101-133 (139)
185 3nyb_B Protein AIR2; polya RNA 37.3 15 0.00051 22.2 1.5 51 74-131 5-55 (83)
186 2zjr_Z 50S ribosomal protein L 37.1 22 0.00075 20.1 2.1 26 44-74 26-51 (60)
187 1bbo_A Human enhancer-binding 36.8 18 0.00061 18.6 1.7 13 65-77 28-40 (57)
188 2dkt_A Ring finger and CHY zin 36.8 15 0.0005 24.7 1.5 18 66-83 27-45 (143)
189 3nw0_A Non-structural maintena 36.7 24 0.00083 25.4 2.8 50 47-107 179-228 (238)
190 3k1l_B Fancl; UBC, ring, RWD, 36.3 20 0.0007 27.8 2.4 60 48-107 308-372 (381)
191 2y1n_A E3 ubiquitin-protein li 36.3 11 0.00038 29.4 1.0 31 96-132 332-362 (389)
192 3uk3_C Zinc finger protein 217 36.0 14 0.00048 19.1 1.2 12 65-76 31-42 (57)
193 3v2d_5 50S ribosomal protein L 35.7 19 0.00066 20.4 1.7 26 44-74 26-51 (60)
194 1yuz_A Nigerythrin; rubrythrin 35.6 29 0.00099 24.3 3.0 24 48-74 171-194 (202)
195 2f9y_B Acetyl-coenzyme A carbo 35.3 6.6 0.00023 29.6 -0.4 30 95-124 23-53 (304)
196 3w0f_A Endonuclease 8-like 3; 35.1 25 0.00086 26.3 2.7 29 97-133 252-284 (287)
197 4gzn_C ZFP-57, zinc finger pro 34.6 14 0.00048 20.4 1.0 30 50-79 6-45 (60)
198 2zet_C Melanophilin; complex, 34.0 29 0.00099 23.4 2.7 34 96-130 68-101 (153)
199 2lv2_A Insulinoma-associated p 33.8 20 0.00067 21.3 1.6 32 48-79 28-69 (85)
200 4bbr_M Transcription initiatio 33.5 19 0.00065 27.4 1.9 29 48-76 21-52 (345)
201 1vk6_A NADH pyrophosphatase; 1 33.1 35 0.0012 24.9 3.3 29 95-123 106-134 (269)
202 3j21_i 50S ribosomal protein L 32.8 28 0.00095 21.1 2.2 29 96-124 35-63 (83)
203 3ttc_A HYPF, transcriptional r 32.7 6.4 0.00022 33.0 -1.0 34 73-106 66-99 (657)
204 2gmg_A Hypothetical protein PF 32.4 21 0.00071 22.7 1.6 10 67-76 68-77 (105)
205 2kvh_A Zinc finger and BTB dom 32.3 18 0.00063 15.2 1.1 11 67-77 4-14 (27)
206 1x4v_A Hypothetical protein LO 31.8 28 0.00095 19.9 2.0 30 48-82 12-43 (63)
207 2adr_A ADR1; transcription reg 31.8 25 0.00085 18.3 1.8 13 65-77 29-41 (60)
208 4g9i_A Hydrogenase maturation 31.6 9.1 0.00031 32.6 -0.2 65 44-108 102-190 (772)
209 2elx_A Zinc finger protein 406 31.3 20 0.00068 16.1 1.2 16 64-79 5-20 (35)
210 2elm_A Zinc finger protein 406 31.3 23 0.00078 16.5 1.4 17 63-79 6-22 (37)
211 2yu4_A E3 SUMO-protein ligase 30.7 24 0.00083 21.2 1.7 51 48-105 7-59 (94)
212 2e72_A POGO transposable eleme 30.6 26 0.00088 19.0 1.5 17 92-108 8-24 (49)
213 2cqf_A RNA-binding protein LIN 30.1 62 0.0021 18.0 3.3 12 76-87 9-20 (63)
214 1p7a_A BF3, BKLF, kruppel-like 29.8 19 0.00064 16.6 0.9 16 63-78 8-23 (37)
215 2elq_A Zinc finger protein 406 29.0 23 0.00078 16.2 1.2 16 63-78 6-21 (36)
216 1srk_A Zinc finger protein ZFP 29.0 24 0.00084 15.9 1.3 18 63-80 4-21 (35)
217 2fiy_A Protein FDHE homolog; F 28.9 27 0.00093 26.3 2.0 36 96-131 182-231 (309)
218 1wjv_A Cell growth regulating 28.9 40 0.0014 20.2 2.4 27 98-124 12-47 (79)
219 2kvf_A Zinc finger and BTB dom 28.6 22 0.00076 14.9 1.0 11 67-77 4-14 (28)
220 1rik_A E6APC1 peptide; E6-bind 28.2 22 0.00076 15.0 1.0 12 67-78 3-14 (29)
221 3u50_C Telomerase-associated p 28.2 29 0.00098 23.9 1.9 27 48-75 42-68 (172)
222 2k16_A Transcription initiatio 28.0 46 0.0016 19.1 2.6 57 46-109 16-72 (75)
223 2elp_A Zinc finger protein 406 27.9 26 0.00087 16.1 1.2 16 63-78 6-21 (37)
224 2yre_A F-box only protein 30; 27.9 44 0.0015 20.9 2.6 24 101-124 24-48 (100)
225 2elt_A Zinc finger protein 406 27.7 25 0.00085 15.9 1.2 16 63-78 6-21 (36)
226 2els_A Zinc finger protein 406 27.4 26 0.00089 15.9 1.2 16 64-79 7-22 (36)
227 1fv5_A First zinc finger of U- 27.3 20 0.00067 17.7 0.7 21 63-83 5-25 (36)
228 3iz5_m 60S ribosomal protein L 27.3 37 0.0013 21.0 2.1 29 96-124 36-64 (92)
229 2m0d_A Zinc finger and BTB dom 27.3 25 0.00084 14.8 1.0 13 66-78 3-15 (30)
230 2kvg_A Zinc finger and BTB dom 27.1 19 0.00065 15.3 0.6 11 67-77 4-14 (27)
231 2lvu_A Zinc finger and BTB dom 32.9 13 0.00046 15.5 0.0 11 67-77 3-13 (26)
232 1ard_A Yeast transcription fac 26.9 20 0.00069 15.1 0.7 10 67-76 3-12 (29)
233 2aus_D NOP10, ribosome biogene 25.9 29 0.00099 19.7 1.3 24 48-77 5-28 (60)
234 2elv_A Zinc finger protein 406 25.9 29 0.001 15.7 1.2 17 63-79 6-22 (36)
235 1wfe_A Riken cDNA 2310008M20 p 25.8 34 0.0012 20.8 1.7 30 48-82 25-56 (86)
236 2f42_A STIP1 homology and U-bo 25.8 41 0.0014 23.2 2.4 52 44-108 102-153 (179)
237 2bl6_A Nucleocapsid protein P1 25.7 66 0.0023 15.7 2.6 12 76-87 2-13 (37)
238 3j21_g 50S ribosomal protein L 25.6 24 0.00082 19.3 0.9 11 47-57 13-23 (51)
239 1x6e_A Zinc finger protein 24; 24.9 26 0.00087 19.2 1.0 14 64-77 40-53 (72)
240 2zkr_2 60S ribosomal protein L 24.9 29 0.001 21.7 1.3 23 97-122 17-39 (97)
241 2elo_A Zinc finger protein 406 24.7 24 0.00083 16.1 0.8 17 63-79 6-22 (37)
242 1lko_A Rubrerythrin all-iron(I 24.6 28 0.00094 24.1 1.3 25 48-74 155-179 (191)
243 2em8_A Zinc finger protein 224 24.4 40 0.0014 16.4 1.6 16 63-78 9-24 (46)
244 2m0f_A Zinc finger and BTB dom 24.2 28 0.00097 14.5 0.9 11 67-77 3-13 (29)
245 1wgm_A Ubiquitin conjugation f 24.1 95 0.0032 18.8 3.7 50 45-108 19-69 (98)
246 3izc_m 60S ribosomal protein R 24.1 41 0.0014 20.8 1.9 29 96-124 36-64 (92)
247 2l6l_A DNAJ homolog subfamily 23.9 38 0.0013 22.4 1.8 13 96-108 133-145 (155)
248 6rxn_A Rubredoxin; electron tr 23.8 21 0.00072 19.1 0.4 9 50-58 6-14 (46)
249 2el5_A Zinc finger protein 268 23.6 31 0.0011 16.3 1.1 19 63-81 7-25 (42)
250 2m0e_A Zinc finger and BTB dom 23.4 24 0.00084 14.7 0.6 10 68-77 4-13 (29)
251 2em7_A Zinc finger protein 224 23.3 41 0.0014 16.3 1.6 20 63-82 9-28 (46)
252 2ept_A Zinc finger protein 32; 23.3 35 0.0012 16.1 1.2 19 63-81 7-25 (41)
253 2el6_A Zinc finger protein 268 23.3 42 0.0014 16.3 1.6 20 63-82 9-28 (46)
254 4a17_Y RPL37A, 60S ribosomal p 23.2 46 0.0016 21.0 2.0 29 96-124 36-64 (103)
255 3lqh_A Histone-lysine N-methyl 23.0 51 0.0017 22.8 2.4 57 49-105 3-63 (183)
256 2epc_A Zinc finger protein 32; 23.0 35 0.0012 16.1 1.2 17 63-79 8-24 (42)
257 2a20_A Regulating synaptic mem 22.8 45 0.0015 18.9 1.7 37 96-134 9-45 (62)
258 2con_A RUH-035 protein, NIN on 22.7 36 0.0012 20.4 1.4 15 44-58 26-40 (79)
259 2enc_A Zinc finger protein 224 22.6 43 0.0015 16.2 1.6 17 63-79 9-25 (46)
260 2ytb_A Zinc finger protein 32; 22.6 29 0.00097 16.4 0.8 20 63-82 8-27 (42)
261 2li8_A Protein LIN-28 homolog 22.5 73 0.0025 18.5 2.7 12 76-87 26-37 (74)
262 1paa_A Yeast transcription fac 22.4 26 0.00088 14.9 0.5 11 67-77 3-13 (30)
263 1wys_A Riken cDNA 2310008M20 p 22.3 57 0.0019 19.3 2.2 29 49-82 15-45 (75)
264 1znf_A 31ST zinc finger from X 21.9 28 0.00096 14.4 0.6 10 68-77 3-12 (27)
265 2en2_A B-cell lymphoma 6 prote 21.9 35 0.0012 16.1 1.1 19 63-81 8-26 (42)
266 2elr_A Zinc finger protein 406 21.8 32 0.0011 15.5 0.9 15 64-78 7-21 (36)
267 1njq_A Superman protein; zinc- 21.8 37 0.0013 15.8 1.2 16 64-79 4-19 (39)
268 2yu5_A Zinc finger protein 473 21.6 37 0.0013 16.3 1.2 19 63-81 9-27 (44)
269 3po3_S Transcription elongatio 21.6 80 0.0027 21.6 3.2 11 114-124 165-175 (178)
270 2eow_A Zinc finger protein 347 21.6 38 0.0013 16.4 1.2 21 62-82 8-28 (46)
271 2eof_A Zinc finger protein 268 21.3 37 0.0013 16.2 1.1 19 63-81 9-27 (44)
272 2epw_A Zinc finger protein 268 21.2 38 0.0013 16.4 1.2 20 63-82 9-28 (46)
273 2eou_A Zinc finger protein 473 21.1 38 0.0013 16.3 1.1 14 64-77 10-23 (44)
274 2emi_A Zinc finger protein 484 21.1 39 0.0013 16.4 1.2 20 63-82 9-28 (46)
275 2i5o_A DNA polymerase ETA; zin 21.1 38 0.0013 17.4 1.1 13 96-108 9-21 (39)
276 2eoo_A ZFP-95, zinc finger pro 21.0 41 0.0014 16.4 1.2 21 62-82 8-28 (46)
277 2eos_A B-cell lymphoma 6 prote 20.9 35 0.0012 16.2 1.0 23 63-85 8-30 (42)
278 2yrj_A Zinc finger protein 473 20.8 41 0.0014 16.2 1.2 23 63-85 9-31 (46)
279 2emb_A Zinc finger protein 473 20.7 39 0.0013 16.2 1.1 20 63-82 9-28 (44)
280 2epv_A Zinc finger protein 268 20.7 54 0.0018 15.7 1.7 17 63-79 9-25 (44)
281 2ene_A Zinc finger protein 347 20.7 41 0.0014 16.3 1.2 24 62-85 8-31 (46)
282 2lce_A B-cell lymphoma 6 prote 20.7 76 0.0026 17.1 2.5 31 48-78 17-57 (74)
283 2emf_A Zinc finger protein 484 20.5 41 0.0014 16.3 1.2 23 63-85 9-31 (46)
284 2ep3_A Zinc finger protein 484 20.5 40 0.0014 16.3 1.2 23 63-85 9-31 (46)
285 2eml_A Zinc finger protein 28 20.5 39 0.0013 16.4 1.1 21 62-82 8-28 (46)
286 2emj_A Zinc finger protein 28 20.4 40 0.0014 16.4 1.2 20 63-82 9-28 (46)
287 1klr_A Zinc finger Y-chromosom 20.4 30 0.001 14.5 0.6 9 68-76 4-12 (30)
288 2yte_A Zinc finger protein 473 20.4 34 0.0012 16.1 0.8 18 63-80 7-24 (42)
289 2emx_A Zinc finger protein 268 20.4 42 0.0014 16.1 1.2 20 63-82 7-26 (44)
290 2emy_A Zinc finger protein 268 20.3 42 0.0014 16.3 1.2 21 62-82 8-28 (46)
291 2yts_A Zinc finger protein 484 20.3 40 0.0014 16.3 1.1 23 63-85 9-31 (46)
292 2eoy_A Zinc finger protein 473 20.2 44 0.0015 16.2 1.3 20 63-82 9-28 (46)
293 2yu8_A Zinc finger protein 347 20.1 42 0.0014 16.3 1.2 24 62-85 8-31 (46)
294 2cot_A Zinc finger protein 435 20.1 53 0.0018 18.0 1.7 31 48-78 18-58 (77)
295 2em4_A Zinc finger protein 28 20.1 43 0.0015 16.3 1.2 20 62-81 8-27 (46)
296 2ema_A Zinc finger protein 347 20.1 43 0.0015 16.2 1.2 24 62-85 8-31 (46)
297 2el4_A Zinc finger protein 268 20.0 42 0.0014 16.2 1.2 24 62-85 8-31 (46)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.76 E-value=1.2e-19 Score=108.02 Aligned_cols=45 Identities=44% Similarity=1.068 Sum_probs=41.8
Q ss_pred ccccccCCCCCCCcceeecCCCCeEEecc--CcceeecccccccccC
Q psy12853 91 FDSELIKCCPMCSVPIEKDEGCAQMLCKR--CKHVFCWYCLASLDVS 135 (137)
Q Consensus 91 ~~~~~~~~CP~C~~~iek~~gC~hm~C~~--C~~~fC~~C~~~~~~~ 135 (137)
|+.+++|+||+|+++|||++|||||+|+. |+++|||+|+++|..+
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 45678999999999999999999999998 9999999999999865
No 2
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.35 E-value=1.8e-13 Score=86.76 Aligned_cols=59 Identities=19% Similarity=0.486 Sum_probs=52.9
Q ss_pred hhHHHHhhccccccCCCCcccCCCCCCceeecCCCCeeecccccccccccccccc---cCCC
Q psy12853 30 SVIWHRTQVSGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASR---DYGG 88 (137)
Q Consensus 30 ~~~~~r~~~~~a~~~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~---h~~~ 88 (137)
.++|++++++.++..+++++|||+|+.+++.+++...++|+.|++.||+.|+.+| |.+.
T Consensus 7 ~e~y~~~l~e~~v~~~~~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~ 68 (86)
T 2ct7_A 7 GALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGR 68 (86)
T ss_dssp CCSSSSCCCCSCCCSCCCEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTS
T ss_pred HHHHHHHHHHHHHhcCCCEeECcCCCchheecCCCCceEeCCCCCccccccCCchhhcCCCC
Confidence 3577788888888889999999999999988877888999999999999999999 9996
No 3
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.20 E-value=2e-12 Score=80.88 Aligned_cols=56 Identities=14% Similarity=0.356 Sum_probs=49.3
Q ss_pred hhHHHHhhccccccCCCCcccCC--CCCCceeecCCCCeeecc-----cccccccccccccccC
Q psy12853 30 SVIWHRTQVSGATFDSELIKCCP--MCSVPIEKDEGCAQMLCK-----RCKHVFCWYCLASRDY 86 (137)
Q Consensus 30 ~~~~~r~~~~~a~~~~~~~~~CP--~C~~~i~~~~~~~~~~C~-----~C~~~fC~~C~~~~h~ 86 (137)
.++|+++.+++++..+. .+||| +|+.++..+++...++|+ .|++.||+.|+.+||.
T Consensus 8 ~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 8 YNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp CCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred HHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 35778888888777775 99999 699999988788889998 9999999999999999
No 4
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=1.4e-08 Score=59.82 Aligned_cols=43 Identities=47% Similarity=1.093 Sum_probs=38.6
Q ss_pred CCCcccCCCCCCceeecCCCCeeeccc--ccccccccccccccCC
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKR--CKHVFCWYCLASRDYG 87 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~--C~~~fC~~C~~~~h~~ 87 (137)
..+.+.||+|..+|++++|.+.|+|.. |+..|||.|+.+|...
T Consensus 3 ~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 3 AANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 356789999999999999999999987 9999999999988654
No 5
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=98.00 E-value=5.9e-06 Score=51.82 Aligned_cols=38 Identities=21% Similarity=0.540 Sum_probs=33.8
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
+.+-||+|..++...++-..++|..||+.||+.|+.+|
T Consensus 24 ~~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 24 KFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CEECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CEeECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 45569999999888777778999889999999999999
No 6
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.90 E-value=6.1e-06 Score=51.11 Aligned_cols=40 Identities=20% Similarity=0.513 Sum_probs=36.2
Q ss_pred ccCCCCC--CCcceeecCCCCeEEec-----cCcceeeccccccccc
Q psy12853 95 LIKCCPM--CSVPIEKDEGCAQMLCK-----RCKHVFCWYCLASLDV 134 (137)
Q Consensus 95 ~~~~CP~--C~~~iek~~gC~hm~C~-----~C~~~fC~~C~~~~~~ 134 (137)
..+-||. |+..|...++...++|. .||+.||+.|+++|+.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 4788997 99999988889999997 7999999999999976
No 7
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.76 E-value=0.00034 Score=46.08 Aligned_cols=87 Identities=24% Similarity=0.478 Sum_probs=52.9
Q ss_pred CcccCCCCCCceeec-CCCCeeecccccccccccccccccCCCC----------------cccccccCCCCCCCcceeec
Q psy12853 47 LIKCCPMCSVPIEKD-EGCAQMLCKRCKHVFCWYCLASRDYGGA----------------TFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~-~~~~~~~C~~C~~~fC~~C~~~~h~~~~----------------~~~~~~~~~CP~C~~~iek~ 109 (137)
+...||-|...+... .+...+.-..||+.||..|...|-.... .+.+.....||-|...++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~~~~C~iC~~~~~~~ 85 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEI 85 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSSSCBCTTTCCBHHHH
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCCCCCCCCCCCccccc
Confidence 355788888776542 1122223337999999999988854321 12233455677777666543
Q ss_pred --CCCCeEEeccCcceeeccccccccc
Q psy12853 110 --EGCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 110 --~gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
.+-..+.. .||+.||+.|...|..
T Consensus 86 ~~~~~~~~~~-~CgH~fc~~Ci~~~~~ 111 (133)
T 4ap4_A 86 VQNGRLIVST-ECGHVFCSQCLRDSLK 111 (133)
T ss_dssp HHTTCCEEEE-TTSBEEEHHHHHHHHH
T ss_pred cccCcceEeC-CCCChhhHHHHHHHHH
Confidence 12222444 4999999998877743
No 8
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=96.69 E-value=0.0019 Score=39.84 Aligned_cols=60 Identities=25% Similarity=0.640 Sum_probs=40.3
Q ss_pred ccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecCCCCeEEeccCc--ceeec
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCK--HVFCW 126 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~gC~hm~C~~C~--~~fC~ 126 (137)
..||.|...+..+++ ...|..|+..|= ... .||.|+.++|+ |..|| -.||-
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~----------------~~a-fCPeCgq~Le~--------lkACGA~~yFC~ 55 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFS----------------LQA-LCPDCRQPLQV--------LKACGAVDYFCQ 55 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEE----------------EEE-ECSSSCSCCCE--------EEETTEEEECCT
T ss_pred CCCCCCCCccccCCC--ceECccccccCC----------------Ccc-cCcchhhHHHH--------HHhcCCcCeeec
Confidence 579999999987543 445655544321 112 79999999988 55676 46788
Q ss_pred ccccccccC
Q psy12853 127 YCLASLDVS 135 (137)
Q Consensus 127 ~C~~~~~~~ 135 (137)
.|++-.+.+
T Consensus 56 ~C~~LiSkk 64 (81)
T 2jrp_A 56 NGHGLISKK 64 (81)
T ss_dssp TTTCCCCTT
T ss_pred cCCCEeecc
Confidence 887765543
No 9
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.77 E-value=0.0064 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccc
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
...++||.|+..+..........|++|+..+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred EecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4589999999865554556788999998754
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=94.92 E-value=0.0058 Score=38.68 Aligned_cols=49 Identities=22% Similarity=0.657 Sum_probs=36.8
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
...||-|...+. ..+.+..||+.||..|...|-... ...||.|+..+..
T Consensus 22 ~~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~~~-------~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLTEQ-------RAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHHHT-------CSBCTTTCCBCCG
T ss_pred CCCCccCCcccc-----CccccCCCCChhhHHHHHHHHHHC-------cCCCCCCCCcCCH
Confidence 446888887764 356777899999999998764332 1579999998854
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.85 E-value=0.023 Score=32.81 Aligned_cols=51 Identities=27% Similarity=0.462 Sum_probs=36.0
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+... +. ..|++.||..|...|-. .....||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~p-----~~-~~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP-----KQ-TECGHRFCESCMAALLS-------SSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC-----CC-CSSSCCCCHHHHHHHHT-------TSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe-----eE-CCCCCHHHHHHHHHHHH-------hCcCCCCCCCcCCChh
Confidence 4456799888776421 11 26999999999987753 2245799999988654
No 12
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=94.79 E-value=0.032 Score=30.80 Aligned_cols=29 Identities=28% Similarity=0.713 Sum_probs=23.9
Q ss_pred cccCCCCCC-ceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSV-PIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~-~i~~~~~~~~~~C~~C~~~f 76 (137)
...||.|+. .+..+.....+.|+.||..+
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 557999998 88888777889999888765
No 13
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=94.40 E-value=0.0037 Score=39.96 Aligned_cols=51 Identities=35% Similarity=0.789 Sum_probs=36.6
Q ss_pred ccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecCC
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEG 111 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~g 111 (137)
.+|+.|+.+|..-+ +.+ -|++.||+.|...|. ....+.||.|+.+|++.+-
T Consensus 2 hfC~~C~~Pi~iyg--RmI---PCkHvFCydCa~~~~-------~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 2 HFCDKCGLPIKVYG--RMI---PCKHVFCYDCAILHE-------KKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp CBCTTTCSBCSEEE--EEE---TTCCEEEHHHHHHHH-------HTTCCBCTTTCCBCSEEEE
T ss_pred eecCccCCCeEEEe--eec---cccccHHHHHHHHHH-------hccCCCCcCcCCeeeeeEE
Confidence 47899999986532 222 378999999976532 2345689999999988654
No 14
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=94.34 E-value=0.063 Score=29.54 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=33.8
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcce
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPI 106 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~i 106 (137)
...||-|...+.. +...+.-+.|++.||..|...|-.. ...||.|+..+
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~~~~C~H~f~~~Ci~~w~~~--------~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED--GEEARFLPRCGHGFHAECVDMWLGS--------HSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT--TSCCEECSSSCCEECTTHHHHTTTT--------CCSCSSSCCCS
T ss_pred CCcCccCCccccC--CCceEECCCCCCcccHHHHHHHHHc--------CCcCcCCCCEe
Confidence 3457777666543 2234445569999999999888543 34799998876
No 15
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.32 E-value=0.053 Score=31.67 Aligned_cols=53 Identities=26% Similarity=0.609 Sum_probs=37.3
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+.. .+.- .|++.||..|...|-.. ......||.|+..+.+.
T Consensus 18 ~~~~~C~IC~~~~~~-----~~~~-~CgH~fC~~Ci~~~~~~-----~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK-----PVTI-DCGHNFCLKCITQIGET-----SCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS-----EEEC-TTCCEEEHHHHHHHCSS-----SCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC-----eEEc-CCCChhhHHHHHHHHHc-----CCCCCCCCCCCCcCCcc
Confidence 445678988876541 2222 69999999999877542 12356899999998764
No 16
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=94.15 E-value=0.052 Score=33.31 Aligned_cols=35 Identities=26% Similarity=0.734 Sum_probs=29.0
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcce-----eecccccccc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKHV-----FCWYCLASLD 133 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~~-----fC~~C~~~~~ 133 (137)
..||.|+..+++.++ +..|..|+.. ||-.|++++.
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCC
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHH
Confidence 579999999999877 7779989765 6888888875
No 17
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=94.02 E-value=0.0067 Score=39.65 Aligned_cols=57 Identities=25% Similarity=0.545 Sum_probs=37.0
Q ss_pred CCCcccCCCCCCceeecC-CCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 45 SELIKCCPMCSVPIEKDE-GCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~-~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
+++...||-|...+.... .........|++.||..|...|... .+.||.|+..+++.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--------CSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--------CCCCCCCCCcCChh
Confidence 344555666665554321 1122233379999999999887643 46899999999765
No 18
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=93.94 E-value=0.053 Score=34.35 Aligned_cols=24 Identities=29% Similarity=0.901 Sum_probs=11.1
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKH 122 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~ 122 (137)
..||.|+..++..+| +..|..|+.
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~ 56 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGE 56 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCC
T ss_pred ccCccCCCcceecCC--EEECccccc
Confidence 345555554444444 444444443
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.93 E-value=0.02 Score=34.78 Aligned_cols=57 Identities=23% Similarity=0.463 Sum_probs=37.9
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+.... ...+.- .|++.||..|...|-... .....||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQ-LRPKLL-HCGHTICRQCLEKLLASS-----INGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTS-SCEEEC-SSSCEEEHHHHHHHHHHC-----SSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccC-CCeEEC-CCCChhhHHHHHHHHHcC-----CCCcCCCCCCCcccch
Confidence 34567898887764322 113333 599999999998764321 1356899999988654
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=93.87 E-value=0.059 Score=32.62 Aligned_cols=55 Identities=29% Similarity=0.642 Sum_probs=37.0
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.+...||-|-.++... +.....| .||+.||..|...+-.. ....||.|+..+...
T Consensus 9 ~~~~~CpICle~~~~~-d~~~~p~-~CGH~fC~~Cl~~~~~~-------~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEID-DINFFPC-TCGYQICRFCWHRIRTD-------ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTT-TTTCCSS-TTSCCCCHHHHHHHTTS-------SCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccc-ccccccc-CCCCCcCHHHHHHHHhc-------CCCCCCCCCCccCCC
Confidence 3456799888866432 2233445 69999999998654221 246899999988653
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=93.65 E-value=0.016 Score=33.84 Aligned_cols=56 Identities=25% Similarity=0.574 Sum_probs=39.1
Q ss_pred CCcccCCCCCCceeec-CCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKD-EGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~-~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+... .+...+.-..|++.||..|...|-.. ...||.|+..+...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--------CSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--------CCCCCCCCCccChh
Confidence 3456788888876543 22333344579999999999877432 25899999998754
No 22
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.37 E-value=0.029 Score=32.96 Aligned_cols=51 Identities=22% Similarity=0.566 Sum_probs=36.2
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+.. .+.-..|++.||..|...|-.. ...||.|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYY--------SNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHH--------CSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHc--------CCcCCCcCcccCcc
Confidence 345678888766532 2333469999999998776432 35899999998764
No 23
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=93.28 E-value=0.059 Score=30.62 Aligned_cols=31 Identities=23% Similarity=0.449 Sum_probs=23.1
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccc
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
...++||.|+..+........+.|++|+...
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 4578999999866544445688999988764
No 24
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=93.22 E-value=0.044 Score=31.62 Aligned_cols=44 Identities=25% Similarity=0.668 Sum_probs=32.6
Q ss_pred ccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCC
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCS 103 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~ 103 (137)
+.|-.|...+. +.....|++|+..||..|-.=.| +....||.|.
T Consensus 16 ~~C~~C~~~~~---~~~~y~C~~C~~~FC~dCD~fiH--------e~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELK---DQHVYVCAVCQNVFCVDCDVFVH--------DSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECT---TSEEECCTTTTCCBCHHHHHTTT--------TTSCSSSTTC
T ss_pred CcccccCcccC---CCccEECCccCcCcccchhHHHH--------hhccCCcCCC
Confidence 45888888773 12247899999999999976444 4467899884
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=93.00 E-value=0.12 Score=28.40 Aligned_cols=29 Identities=28% Similarity=0.713 Sum_probs=22.4
Q ss_pred cCCCCCCCc-ceeecCCCCeEEeccCccee
Q psy12853 96 IKCCPMCSV-PIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~-~iek~~gC~hm~C~~C~~~f 124 (137)
...||.|+. .+.....=..+.|..||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 567999988 77666666679999888754
No 26
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.89 E-value=0.086 Score=30.77 Aligned_cols=48 Identities=27% Similarity=0.692 Sum_probs=33.7
Q ss_pred CcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
....||-|...+.. .+.- .|++.||..|...|-.. ...||.|+..|..
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~-~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVH-----PVSL-PCKHVFCYLCVKGASWL--------GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSS-----EEEE-TTTEEEEHHHHHHCTTC--------SSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCC-----CEEc-cCCCHHHHHHHHHHHHC--------CCcCcCcCchhCH
Confidence 34578888766521 2333 49999999999877543 2589999998864
No 27
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=92.68 E-value=0.045 Score=30.10 Aligned_cols=49 Identities=24% Similarity=0.465 Sum_probs=32.6
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcce
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPI 106 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~i 106 (137)
...||-|...+.. +...+.-..|++.||..|...|-.. ...||.|+..+
T Consensus 5 ~~~C~IC~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 5 SSGCPICLEDIHT--SRVVAHVLPCGHLLHRTCYEEMLKE--------GYRCPLCSGPS 53 (55)
T ss_dssp CCSCTTTCCCCCT--TTSCEEECTTSCEEETTHHHHHHHH--------TCCCTTSCCSS
T ss_pred CCcCcccChhhcC--CCcCeEecCCCCcccHHHHHHHHHc--------CCcCCCCCCcC
Confidence 3467777666532 2223444468999999999876432 26899998876
No 28
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.62 E-value=0.029 Score=33.24 Aligned_cols=54 Identities=20% Similarity=0.463 Sum_probs=37.3
Q ss_pred CcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecCC
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEG 111 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~g 111 (137)
....||-|...+.... .+....|++.||..|...|-.. ...||.|+..+...+|
T Consensus 22 ~~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~--------~~~CP~Cr~~~~~~~g 75 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLKA--------NRTCPICRADSGPSSG 75 (75)
T ss_dssp SCCEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHHH--------CSSCTTTCCCCCCCCC
T ss_pred CCCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHHc--------CCcCcCcCCcCCCCCC
Confidence 3456887776654322 3333358999999999887532 2479999999987665
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.43 E-value=0.22 Score=27.68 Aligned_cols=45 Identities=24% Similarity=0.554 Sum_probs=30.8
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
...||-|...+... .. ..|++.||..|... ....||.|+..+...
T Consensus 6 ~~~C~IC~~~~~~p---~~---l~CgH~fC~~Ci~~-----------~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKCP---KL---LPCLHTLCSGCLEA-----------SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBCC---SC---STTSCCSBTTTCSS-----------SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCCe---EE---cCCCCcccHHHHcc-----------CCCCCCcCCcEeecC
Confidence 44678777665421 11 25899999999754 245799999988653
No 30
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=92.33 E-value=0.084 Score=29.95 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=22.9
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
..+.||+|+..+.-...-+.+.|..||+.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 467899999866544445799999999875
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=92.22 E-value=0.037 Score=31.77 Aligned_cols=52 Identities=25% Similarity=0.583 Sum_probs=33.1
Q ss_pred ccCCCCCC-ceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 49 KCCPMCSV-PIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 49 ~~CP~C~~-~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
..||-|.. .+.. +....+. ..||+.||..|...|-.. ....||.|+..+.+.
T Consensus 4 ~~C~IC~~~~~~~-~~~~~~~-~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 4 QGCPRCKTTKYRN-PSLKLMV-NVCGHTLCESCVDLLFVR-------GAGNCPECGTPLRKS 56 (65)
T ss_dssp TCCSTTTTHHHHC-SSCCEEE-CTTCCCEEHHHHHHHHHT-------TSSSCTTTCCCCSSC
T ss_pred CcCCcCCCCccCC-CccCeec-CCCCCHhHHHHHHHHHHc-------CCCcCCCCCCccccc
Confidence 35777776 4332 2221122 269999999998776221 235799999998764
No 32
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=92.10 E-value=0.14 Score=30.37 Aligned_cols=30 Identities=17% Similarity=0.364 Sum_probs=25.6
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
.+..||.|+..++-......+.|..||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 466899999999988888899998888766
No 33
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=92.07 E-value=0.073 Score=31.58 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=34.9
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.....||-|...+.... ..+. ..|++.||..|...|-.. ...||.|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~--~~~~-~~C~H~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYALGE--SVRQ-LPCNHLFHDSCIVPWLEQ--------HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCCTTS--CEEE-CTTSCEEETTTTHHHHTT--------TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCC--CEEE-eCCCCeecHHHHHHHHHc--------CCcCcCcCCccCC
Confidence 33557888877664322 1111 148999999999887543 2489999988865
No 34
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=91.87 E-value=0.066 Score=33.39 Aligned_cols=48 Identities=23% Similarity=0.583 Sum_probs=35.0
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
...||-|...+.. .+.-+.||+.||..|...|-.. ...||.|+..+..
T Consensus 22 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSY--------KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTT--------CCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHC--------CCCCCCCCCcCCh
Confidence 3468888776632 3344579999999999877653 2479999998865
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=91.87 E-value=0.097 Score=30.95 Aligned_cols=56 Identities=20% Similarity=0.530 Sum_probs=36.7
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.....||-|...+.. .+.- .|++.||..|...|-..... .......||.|+..+..
T Consensus 10 ~~~~~C~IC~~~~~~-----p~~l-~CgH~fC~~Ci~~~~~~~~~-~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTE-----PLSL-DCGHSLCRACITVSNKEAVT-SMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSS-----CCCC-SSSCCCCHHHHSCCCCCCSS-SCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCC-----eeEC-CCCCHHHHHHHHHHHHhccc-CCCCCCcCCCCCCcCCH
Confidence 345578888766532 1122 59999999999877554211 11346789999998865
No 36
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=91.81 E-value=0.083 Score=33.51 Aligned_cols=49 Identities=27% Similarity=0.561 Sum_probs=35.8
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
...||-|...+. ..+.-..||+.||..|...|-.. ...||.|+..+...
T Consensus 15 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLET--------SKYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHTS--------CSBCTTTCCBSCSS
T ss_pred cCCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHHh--------CCcCcCCCcccccc
Confidence 457888877663 23444469999999999877543 26799999988754
No 37
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=91.78 E-value=0.15 Score=32.77 Aligned_cols=46 Identities=24% Similarity=0.634 Sum_probs=32.7
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
...||-|...+.. + +.=..||+.||..|...|-. ..||.|+..+..
T Consensus 22 ~~~C~IC~~~~~~----p-v~~~~CgH~fC~~Ci~~~~~----------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNILRE----P-VCLGGCEHIFCSNCVSDCIG----------TGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCCSS----C-BCCCSSSCCBCTTTGGGGTT----------TBCSSSCCBCSC
T ss_pred CCCCCCCChHhhC----c-cEeCCCCCHHHHHHHHHHhc----------CCCcCCCCcCcc
Confidence 4578888776632 1 22225899999999987643 579999988854
No 38
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=91.51 E-value=0.098 Score=30.86 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=35.2
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
+....||-|...+. ..+.=+.|++.||..|...|-.. .....||.|+..+.+
T Consensus 13 ~~~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~------~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALLE------SDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHHH------SSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHHh------cCCCcCCCCCCcCCC
Confidence 44567888876653 23343459999999998876432 124689999987544
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=91.34 E-value=0.076 Score=32.54 Aligned_cols=50 Identities=16% Similarity=0.366 Sum_probs=34.0
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcce
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPI 106 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~i 106 (137)
+....||-|...+. ..+.-+.||+.||..|...|-.. .....||.|+..+
T Consensus 11 ~~~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALLE------SDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECS-----SCEECTTTCCEECHHHHHHHHHH------CTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhc-----CceECCCCCCHHHHHHHHHHHHh------cCCCcCcCCCCcC
Confidence 34567888887653 22333459999999998766321 1235899999886
No 40
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=91.24 E-value=0.17 Score=32.07 Aligned_cols=45 Identities=27% Similarity=0.795 Sum_probs=31.4
Q ss_pred ccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecCCC
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGC 112 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~gC 112 (137)
..||.|...+..+++ .+.|..|+..|= ..-.||.|+.++|+-..|
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~~C~~~f~-----------------~~a~CPdC~q~LevLkAC 77 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCRSCGEFIE-----------------MKALCPDCHQPLQVLKAC 77 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEETTTCCEEE-----------------EEEECTTTCSBCEEEEET
T ss_pred ccCccCCCcceecCC--EEECccccchhh-----------------ccccCcchhhHHHHHHHh
Confidence 799999999987543 455666555332 233699999999986543
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=91.24 E-value=0.068 Score=33.58 Aligned_cols=33 Identities=21% Similarity=0.686 Sum_probs=23.8
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeecccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 133 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~ 133 (137)
...||-|...+.. -+++..||+.||+.|...|-
T Consensus 22 ~~~C~IC~~~~~~-----p~~~~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 22 VFRCFICMEKLRD-----ARLCPHCSKLCCFSCIRRWL 54 (100)
T ss_dssp HTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCCCccCCccccC-----ccccCCCCChhhHHHHHHHH
Confidence 4579999888753 45656788888888876653
No 42
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=91.22 E-value=0.14 Score=31.87 Aligned_cols=60 Identities=23% Similarity=0.466 Sum_probs=45.7
Q ss_pred CcccCCCCCCceeec-CCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecCCCC
Q psy12853 47 LIKCCPMCSVPIEKD-EGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCA 113 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~-~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~gC~ 113 (137)
+...|--|+--+-.. ++...+.|..|++-.|.-|..- ...+..+.||.|++.+.+..|.-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY-------ErkeG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY-------ERREGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH-------HHHTSCSSCTTTCCCCCCCTTCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH-------HHhccCccccccCCccccccCCC
Confidence 456777888877665 4678899999999999999641 12456789999999998766553
No 43
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.14 E-value=0.15 Score=28.31 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=20.4
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
..+-||+|+..+.-...=+...|.+||..+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ecccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 467799998754443333678888888754
No 44
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.01 E-value=0.06 Score=30.93 Aligned_cols=55 Identities=25% Similarity=0.559 Sum_probs=37.5
Q ss_pred CCcccCCCCCCceeecC-CCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 46 ELIKCCPMCSVPIEKDE-GCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~-~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.....||-|...+.... ....+.-..|++.||..|...|-.. ...||.|+..|.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--------CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--------CCCCCCCCCccCc
Confidence 44567888888765432 2223333479999999999877432 3589999988754
No 45
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=90.50 E-value=0.031 Score=31.73 Aligned_cols=53 Identities=26% Similarity=0.614 Sum_probs=35.1
Q ss_pred ccCCCCCCceeecC-CCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 49 KCCPMCSVPIEKDE-GCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 49 ~~CP~C~~~i~~~~-~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
..||-|...+.... +...+.-..|++.||..|...|-.. ...||.|+..+...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------ANTCPTCRKKINHK 57 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--------CSBCTTTCCBCTTT
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--------CCCCCCCCccCCcc
Confidence 35777777664421 2223333479999999999876432 34899999988653
No 46
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=90.47 E-value=0.093 Score=31.12 Aligned_cols=42 Identities=29% Similarity=0.602 Sum_probs=29.4
Q ss_pred ccCCCCCCceeecCCCCeeeccccccc-ccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
..||-|...+.. .+. ..|++. ||..|...| ..||-|+..|.+
T Consensus 25 ~~C~iC~~~~~~-----~~~-~pCgH~~~C~~C~~~~------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNIA-----IVF-VPCGHLVTCKQCAEAV------------DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBCC-----EEE-ETTCCBCCCHHHHTTC------------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCC-----EEE-cCCCChhHHHHhhhcC------------ccCCCcCcCccC
Confidence 467777654321 111 258999 999997654 789999999875
No 47
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.03 E-value=0.054 Score=32.40 Aligned_cols=56 Identities=23% Similarity=0.598 Sum_probs=36.5
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+.. .+.- .|++.||..|...|-.... .......||.|+..+...
T Consensus 17 ~~~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELLKE-----PVSA-DCNHSFCRACITLNYESNR--NTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCCSS-----CEEC-TTSCCBCHHHHHHHHHHSB--CTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhhCc-----ceeC-CCCCHHHHHHHHHHHHhcc--CCCCCCCCCCCCCcCCHH
Confidence 335578888776532 2233 5999999999986643311 112357899999988653
No 48
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=89.95 E-value=0.048 Score=33.67 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=26.0
Q ss_pred CcccCCCCCCceeecCCCCeeeccccccccc
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC 77 (137)
....||.|+....+..+.....|+.|+..|-
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 3668999999888877788999999888775
No 49
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=89.58 E-value=0.26 Score=31.94 Aligned_cols=31 Identities=16% Similarity=0.385 Sum_probs=23.9
Q ss_pred CcccCCCCCCceeecC----CCCeeeccccccccc
Q psy12853 47 LIKCCPMCSVPIEKDE----GCAQMLCKRCKHVFC 77 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~----~~~~~~C~~C~~~fC 77 (137)
...+||.|+..+.... +...+.|+.|++.+=
T Consensus 3 ~m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~ 37 (113)
T 3h0g_I 3 NFQYCIECNNMLYPREDKVDRVLRLACRNCDYSEI 37 (113)
T ss_dssp CCCCCSSSCCCCEECCCTTTCCCCEECSSSCCEEC
T ss_pred cceeCcCCCCEeeEcccCCCCeeEEECCCCCCeEE
Confidence 3679999999987753 245799999988663
No 50
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.40 E-value=0.082 Score=31.00 Aligned_cols=52 Identities=29% Similarity=0.686 Sum_probs=35.1
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.....||-|...+.... ..+.- .|++.||..|...|-.. ...||.|+..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~--~~~~~-~C~H~f~~~Ci~~~~~~--------~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRD--ELGIC-PCKHAFHRKCLIKWLEV--------RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSS--CEEEE-TTTEEEEHHHHHHHHHH--------CSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCC--cEEEc-CCCCEecHHHHHHHHHc--------CCcCCCcCccccc
Confidence 33557888887764322 22222 48999999999877532 2379999988764
No 51
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=89.34 E-value=0.19 Score=30.03 Aligned_cols=33 Identities=21% Similarity=0.348 Sum_probs=25.1
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
..-|| |+.....+++....+|| ||..+=..=..
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~r 36 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRR 36 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECCSSS
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEE
Confidence 45789 99998888888899998 88776544333
No 52
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.95 E-value=0.11 Score=30.94 Aligned_cols=56 Identities=21% Similarity=0.575 Sum_probs=35.9
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.....||-|...+.. . +.- .|++.||..|...|-.... .......||.|+..+...
T Consensus 17 ~~~~~C~IC~~~~~~----p-~~~-~CgH~fC~~Ci~~~~~~~~--~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELLTQ----P-LSL-DCGHSFCQACLTANHKKSM--LDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCCSS----C-BCC-SSSCCBCTTHHHHHHHHHH--HTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCcccCC----c-eeC-CCCCHHHHHHHHHHHHHhh--cCCCCCcCCCCCCccCHH
Confidence 345678888776632 1 111 5999999999876632200 012256899999988753
No 53
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=88.95 E-value=0.18 Score=31.03 Aligned_cols=30 Identities=23% Similarity=0.530 Sum_probs=25.7
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceee
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFC 125 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC 125 (137)
..+||.|+....+..+=..+.|..||+.|-
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcceeccCCCeEECCCCCCEec
Confidence 558999999888877777999999999874
No 54
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=88.93 E-value=0.22 Score=32.74 Aligned_cols=30 Identities=17% Similarity=0.381 Sum_probs=23.5
Q ss_pred CcccCCCCCCceeec----CCCCeeecccccccc
Q psy12853 47 LIKCCPMCSVPIEKD----EGCAQMLCKRCKHVF 76 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~----~~~~~~~C~~C~~~f 76 (137)
...+||.|+..+... .+...+.|+.|++..
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 368999999988765 345679999998755
No 55
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.92 E-value=0.15 Score=30.46 Aligned_cols=48 Identities=23% Similarity=0.610 Sum_probs=34.0
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCccee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~ie 107 (137)
.....||-|...+.. .+. ..|++.||..|...|-.. ...||.|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~~--------~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN-----PVV-TKCRHYFCESCALEHFRA--------TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS-----EEE-CTTSCEEEHHHHHHHHHH--------CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC-----eeE-ccCCCHhHHHHHHHHHHC--------CCcCCCcCcccc
Confidence 335578888776632 233 369999999998876432 457999999885
No 56
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=88.85 E-value=0.1 Score=34.68 Aligned_cols=46 Identities=28% Similarity=0.631 Sum_probs=33.0
Q ss_pred ccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
..||-|...+. ..+.- .||+.||..|...|-.. ...||.|+..|..
T Consensus 54 ~~C~iC~~~~~-----~~~~~-~CgH~fc~~Ci~~~~~~--------~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTL-NCAHSFCSYCINEWMKR--------KIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCS-----SEEEE-TTSCEEEHHHHHHHTTT--------CSBCTTTCCBCCC
T ss_pred CCCcccCcccC-----CceEC-CCCCCccHHHHHHHHHc--------CCcCCCCCCcCCC
Confidence 36998887663 12333 49999999999877543 3469999998853
No 57
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=88.79 E-value=0.22 Score=33.36 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=24.0
Q ss_pred CCCCcccCCCCCCceeecC----CCCeeecccccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDE----GCAQMLCKRCKHVF 76 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~----~~~~~~C~~C~~~f 76 (137)
.....++||.|+..+.... +...+.|+.|++..
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3456899999999987653 24478898888765
No 58
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=88.72 E-value=0.32 Score=28.66 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=35.1
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
+....||-|...+.. .+.- .||+.||..|...|-.. +...||.|+..+..
T Consensus 6 ~~~~~C~IC~~~~~~-----Pv~~-~CgH~fc~~Ci~~~~~~-------~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD-----PVIV-STGQTYERSSIQKWLDA-------GHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS-----EEEE-TTTEEEEHHHHHHHHTT-------TCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC-----CEEc-CCCCeecHHHHHHHHHH-------CcCCCCCCcCCCCh
Confidence 345678888776632 2333 59999999999876542 24579999998854
No 59
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=88.57 E-value=0.12 Score=35.27 Aligned_cols=48 Identities=29% Similarity=0.595 Sum_probs=34.7
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCccee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~ie 107 (137)
...||-|...+. ..+....|++.||..|...|-.. ....||.|+..+.
T Consensus 54 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 54 ELMCPICLDMLK-----NTMTTKECLHRFCADCIITALRS-------GNKECPTCRKKLV 101 (165)
T ss_dssp HHBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHHT-------TCCBCTTTCCBCC
T ss_pred CCCCcccChHhh-----CcCEeCCCCChhHHHHHHHHHHh-------CcCCCCCCCCcCC
Confidence 347898877664 24555579999999999876432 2457999998874
No 60
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=88.39 E-value=0.35 Score=28.66 Aligned_cols=29 Identities=21% Similarity=0.604 Sum_probs=21.2
Q ss_pred cccCCCCCCceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
..-||.|...+..+.+.....|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45688888888877666777787766554
No 61
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=88.31 E-value=0.3 Score=28.83 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=21.6
Q ss_pred cccCCCCCCceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
..-||.|...+..+.......|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 55789999988887766777777766554
No 62
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=88.28 E-value=0.32 Score=28.73 Aligned_cols=29 Identities=31% Similarity=0.761 Sum_probs=21.5
Q ss_pred cccCCCCCCceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
..-||.|...+..+.......|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45789999888887766777787766554
No 63
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=88.22 E-value=0.35 Score=28.75 Aligned_cols=29 Identities=28% Similarity=0.662 Sum_probs=22.2
Q ss_pred cccCCCCCCceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
..-||.|...+..+.......|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 55799999998887766778887766554
No 64
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=88.19 E-value=0.19 Score=32.10 Aligned_cols=47 Identities=26% Similarity=0.611 Sum_probs=33.2
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCccee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~ie 107 (137)
...||-|...+.. ..+. .||+.||..|...|-.. ....||.|+..+.
T Consensus 15 ~~~C~iC~~~~~~----p~~~--~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTL--PCNHTLCKPCFQSTVEK-------ASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBCSS----CEEC--TTSCEECHHHHCCCCCT-------TTSBCTTTCCBCH
T ss_pred CCCCccCCcccCc----eeEc--CCCCHHhHHHHHHHHhH-------CcCCCCCCCcccC
Confidence 4568888876532 2222 59999999999876542 2367999999875
No 65
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=88.03 E-value=0.68 Score=28.73 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=48.2
Q ss_pred ccCCCCCCceeecCCCCeeecccccccccccccccccCCCCccc-----------ccccCCCCCCC-cceeecCCCCeEE
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFD-----------SELIKCCPMCS-VPIEKDEGCAQML 116 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~-----------~~~~~~CP~C~-~~iek~~gC~hm~ 116 (137)
..|+-|...+. ......|..|+..||..|...+|....... ......|+.-. ..+ .+.
T Consensus 4 ~~C~~C~~~~~---~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l-------~~f 73 (101)
T 2jun_A 4 VLCQFCDQDPA---QDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKV-------NMY 73 (101)
T ss_dssp CBCTTCCSSSC---CBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCC-------CEE
T ss_pred CCCcCCCCCCC---CCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcc-------eEE
Confidence 45777764321 235678999999999999998676422110 01122455442 222 578
Q ss_pred eccCcceeeccccc-ccccCC
Q psy12853 117 CKRCKHVFCWYCLA-SLDVSR 136 (137)
Q Consensus 117 C~~C~~~fC~~C~~-~~~~~~ 136 (137)
|..|+...|+.|.. .-..+|
T Consensus 74 C~~~~~~iC~~C~~~~~H~~H 94 (101)
T 2jun_A 74 CVTDDQLICALCKLVGRHRDH 94 (101)
T ss_dssp ETTTTEEECHHHHHHTTTSSS
T ss_pred CCCCCCccchhcCCCCCcCCC
Confidence 99999999999975 333333
No 66
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=88.00 E-value=0.53 Score=27.94 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=23.8
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
.+..||.|+..++-..+=..+.|..||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 466899999998887665678898888766
No 67
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=87.93 E-value=0.6 Score=27.60 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=23.5
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
.+..||.|+..++-..+=..+.|..||..|
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 466899999998876655678898888765
No 68
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.92 E-value=0.21 Score=30.02 Aligned_cols=52 Identities=19% Similarity=0.501 Sum_probs=34.0
Q ss_pred ccCCCCCCceeec---------CCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 49 KCCPMCSVPIEKD---------EGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 49 ~~CP~C~~~i~~~---------~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
..|+-|...+... .+...+.=+.|++.|+..|...|-... ..||-|+..+..
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--------~~CP~CR~~~~~ 76 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN--------NRCPLCQQDWVV 76 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC--------CBCTTTCCBCCE
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC--------CCCCCcCCCcch
Confidence 3466666655431 223333444799999999998885442 379999988754
No 69
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=87.92 E-value=0.45 Score=25.85 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=24.8
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeecccccccccC
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDVS 135 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~~~ 135 (137)
...||-|...++..+. .+.-..||+.||..|...|...
T Consensus 5 ~~~C~IC~~~~~~~~~--~~~~~~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 5 GVECAVCLAELEDGEE--ARFLPRCGHGFHAECVDMWLGS 42 (55)
T ss_dssp SCCCTTTCCCCCTTSC--CEECSSSCCEECTTHHHHTTTT
T ss_pred CCcCccCCccccCCCc--eEECCCCCCcccHHHHHHHHHc
Confidence 3468888877755432 2333348888888888877543
No 70
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=87.55 E-value=0.46 Score=28.02 Aligned_cols=30 Identities=30% Similarity=0.705 Sum_probs=23.4
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
.+..||.|+..++-..+=..+.|..||..|
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 7 EILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp EECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 456899999988877665678888888765
No 71
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=87.06 E-value=0.14 Score=32.36 Aligned_cols=51 Identities=29% Similarity=0.711 Sum_probs=34.2
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
...||-|...+.. . +. ..||+.||..|...|-... .....||.|+..+...
T Consensus 21 ~~~C~IC~~~~~~----p-~~-~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~~~~~~ 71 (112)
T 1jm7_A 21 ILECPICLELIKE----P-VS-TKCDHIFCKFCMLKLLNQK-----KGPSQCPLCKNDITKR 71 (112)
T ss_dssp HTSCSSSCCCCSS----C-CB-CTTSCCCCSHHHHHHHHSS-----SSSCCCTTTSCCCCTT
T ss_pred CCCCcccChhhcC----e-EE-CCCCCHHHHHHHHHHHHhC-----CCCCCCcCCCCcCCHh
Confidence 3468888776532 1 11 2599999999988764331 1235899999988653
No 72
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=86.26 E-value=0.52 Score=26.82 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=20.7
Q ss_pred cccCCCCCC-ceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSV-PIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~-~i~~~~~~~~~~C~~C~~~f 76 (137)
...||.|+. .+..+.....+.|..||..+
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEE
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEE
Confidence 447999987 56666666678888776554
No 73
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=86.09 E-value=0.19 Score=31.99 Aligned_cols=60 Identities=22% Similarity=0.463 Sum_probs=37.5
Q ss_pred ccCCCCCCceeecC-----------C-CCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecCC
Q psy12853 49 KCCPMCSVPIEKDE-----------G-CAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEG 111 (137)
Q Consensus 49 ~~CP~C~~~i~~~~-----------~-~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~g 111 (137)
..||-|-..+.... . ...+.-..|++.||..|...|-.... ......||-|+..+....|
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~---~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN---KDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC---CSSCCBCTTTCCBSSSCSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc---CCCCCcCCCCCCccCCCCC
Confidence 47888876654321 0 11222447999999999988852111 1234589999998876544
No 74
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.05 E-value=0.22 Score=28.14 Aligned_cols=34 Identities=26% Similarity=0.683 Sum_probs=24.9
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeeccccccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
....||-|...+.. -++- .||+.||+.|...|..
T Consensus 19 ~~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 19 EEVICPICLDILQK-----PVTI-DCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCCBCTTTCSBCSS-----CEEC-TTSSEECHHHHHHHHH
T ss_pred cCCCCCcCCchhCC-----eEEe-CCCCcchHHHHHHHHH
Confidence 34579999887753 3333 5999999999888753
No 75
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.00 E-value=0.77 Score=25.09 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=30.1
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCC
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMC 102 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C 102 (137)
.....||-|...+... +. ..|++.||..|...|-... .....||.|
T Consensus 13 ~~~~~C~IC~~~~~~p-----~~-~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP-----VI-IECGHNFCKACITRWWEDL-----ERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC-----CC-CSSCCCCCHHHHHHHTTSS-----CCSCCCSCC
T ss_pred ccCCCCccCCcccCcc-----Ee-CCCCCccCHHHHHHHHHhc-----CCCCCCCCC
Confidence 3456788887766431 11 2599999999998874321 234578876
No 76
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=85.94 E-value=0.52 Score=27.72 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=20.8
Q ss_pred cccCCCCCCceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
..-||.|..++..+.......|+.|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 45788888888877666677777765544
No 77
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.89 E-value=0.24 Score=28.87 Aligned_cols=33 Identities=21% Similarity=0.522 Sum_probs=18.3
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
....||-|...+... ++-..||+.||+.|...|
T Consensus 14 ~~~~C~IC~~~~~~p-----~~~~~CgH~fC~~Ci~~~ 46 (72)
T 2djb_A 14 PYILCSICKGYLIDA-----TTITECLHTFCKSCIVRH 46 (72)
T ss_dssp GGGSCTTTSSCCSSC-----EECSSSCCEECHHHHHHH
T ss_pred CCCCCCCCChHHHCc-----CEECCCCCHHHHHHHHHH
Confidence 456799998877542 222235555555554433
No 78
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=85.79 E-value=0.11 Score=33.69 Aligned_cols=48 Identities=21% Similarity=0.494 Sum_probs=34.0
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
...||-|...+.. .+.= .||+.||..|...|-. .....||.|+..+..
T Consensus 52 ~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~-------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELVFR-----PITT-VCQHNVCKDCLDRSFR-------AQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBCSS-----EEEC-TTSCEEEHHHHHHHHH-------TTCCBCTTTCCBCCT
T ss_pred CCCCCcCChHHcC-----cEEe-eCCCcccHHHHHHHHh-------HCcCCCCCCCccCCC
Confidence 3568988876642 2222 6999999999876643 123479999999865
No 79
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=84.49 E-value=1 Score=26.49 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.4
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
.+..||.|+..++-...=+.+.|..||..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 466899999988877655678888887765
No 80
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.44 E-value=0.81 Score=29.52 Aligned_cols=29 Identities=14% Similarity=0.448 Sum_probs=22.6
Q ss_pred cCCCCCCCcceeec----CCCCeEEeccCccee
Q psy12853 96 IKCCPMCSVPIEKD----EGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~~iek~----~gC~hm~C~~C~~~f 124 (137)
.+-||.|+.++... .+.+.+.|+.|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 45799999887653 257789999999876
No 81
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=84.18 E-value=0.73 Score=26.29 Aligned_cols=35 Identities=23% Similarity=0.498 Sum_probs=19.6
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
....||-|...++.... +.-..||+.||..|...|
T Consensus 13 ~~~~C~IC~~~~~~~~~---~~~~~C~H~fc~~Ci~~~ 47 (69)
T 2kiz_A 13 TEEKCTICLSILEEGED---VRRLPCMHLFHQVCVDQW 47 (69)
T ss_dssp CCCSBTTTTBCCCSSSC---EEECTTSCEEEHHHHHHH
T ss_pred CCCCCeeCCccccCCCc---EEEeCCCCHHHHHHHHHH
Confidence 45678888776643221 222236666666666554
No 82
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.65 E-value=0.29 Score=29.37 Aligned_cols=37 Identities=27% Similarity=0.613 Sum_probs=21.9
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeecccccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 133 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~ 133 (137)
....||-|...+.....- -+.- .||+.||..|...|-
T Consensus 14 ~~~~C~IC~~~~~~~~~~-~~~~-~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLR-PKLL-HCGHTICRQCLEKLL 50 (88)
T ss_dssp SCCBCTTTCCBCCTTSSC-EEEC-SSSCEEEHHHHHHHH
T ss_pred CCCCCccCCccccccCCC-eEEC-CCCChhhHHHHHHHH
Confidence 345799998777543211 2222 477777777766653
No 83
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=83.38 E-value=1.3 Score=24.91 Aligned_cols=28 Identities=32% Similarity=0.972 Sum_probs=22.9
Q ss_pred ccCCCCCCCcceeecCCCCeEEec--cCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCK--RCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~--~C~~~f 124 (137)
..-.||.|+..++... ..+.|. .||..|
T Consensus 9 ~iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 4668999999988877 688898 788766
No 84
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=83.34 E-value=0.63 Score=27.91 Aligned_cols=27 Identities=26% Similarity=0.699 Sum_probs=22.7
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeecc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWY 127 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~ 127 (137)
..+|..|+..|+..+ +.|+ ||..||-.
T Consensus 25 ~nRC~~CrKkvgL~g----f~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGGC----EECT-TSCEECSS
T ss_pred CCcChhhCCcccccC----eecC-CCCEechh
Confidence 458999999988774 8998 99999974
No 85
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=82.82 E-value=0.48 Score=29.01 Aligned_cols=50 Identities=24% Similarity=0.508 Sum_probs=33.6
Q ss_pred CcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCccee
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~ie 107 (137)
....||-|...+... ...+.- .|++.||..|...|-.. ...||.|+..+.
T Consensus 39 ~~~~C~IC~~~~~~~--~~~~~l-~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKG--DVATEL-PCHHYFHKPCVSIWLQK--------SGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTT--CEEEEE-TTTEEEEHHHHHHHHTT--------TCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCC--CcEEec-CCCChHHHHHHHHHHHc--------CCcCcCcCccCC
Confidence 345688887665432 222223 48999999999888643 237999998774
No 86
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=82.42 E-value=0.37 Score=30.76 Aligned_cols=49 Identities=24% Similarity=0.590 Sum_probs=33.3
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
...||-|...+.. .+. ..||+.||..|...|-.. ....||.|+..+...
T Consensus 23 ~~~C~IC~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHILAD-----PVE-TSCKHLFCRICILRCLKV-------MGSYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBCSS-----EEE-CTTSCEEEHHHHHHHHHH-------TCSBCTTTCCBCCGG
T ss_pred CCCCCCCCcHhcC-----cEE-cCCCCcccHHHHHHHHhH-------CcCcCCCCCCCCCHh
Confidence 3468888776632 233 269999999998766432 134699998887653
No 87
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=82.23 E-value=1.1 Score=26.12 Aligned_cols=29 Identities=21% Similarity=0.666 Sum_probs=23.1
Q ss_pred cccCCCCCCCcceeecCCCCeEEeccCcceeecc
Q psy12853 94 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWY 127 (137)
Q Consensus 94 ~~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~ 127 (137)
....+|..|+..+... -+.|+ ||..||..
T Consensus 13 ~~~~rC~~C~kkvgl~----~f~Cr-Cg~~FC~~ 41 (64)
T 1wfh_A 13 QRPNRCTVCRKRVGLT----GFMCR-CGTTFCGS 41 (64)
T ss_dssp SSCCCCTTTCCCCCTT----CEECS-SSCEECTT
T ss_pred CcCCcChhhCCccCcc----CEEee-cCCEeccc
Confidence 3457899999988665 48996 99999974
No 88
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=81.98 E-value=0.55 Score=28.14 Aligned_cols=42 Identities=26% Similarity=0.673 Sum_probs=28.1
Q ss_pred ccCCCCCCceeecCCCCeeeccccccc-ccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
..|+-|..... ..+. .-||+. ||..|... ++.||-|+..|+.
T Consensus 19 ~~C~IC~~~~~-----~~v~-~pCgH~~~C~~C~~~------------~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI-----NSTF-CPCGHTVCCESCAAQ------------LQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC-----CEEE-ETTCBCCBCHHHHTT------------CSBCTTTCCBCCE
T ss_pred CEeEEeCcccC-----cEEE-ECCCCHHHHHHHHHh------------cCcCCCCCchhhC
Confidence 36777754331 1111 158998 99999754 3489999999876
No 89
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.71 E-value=0.43 Score=28.09 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=29.6
Q ss_pred cccCCCCCCceeecCCCCeeeccccccc-ccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
...||-|...+.. .+. ..|++. ||..|.. ..+.||.|+..|+..
T Consensus 25 ~~~C~IC~~~~~~-----~~~-~pCgH~~~C~~C~~------------~~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIA-----IVF-VPCGHLVTCKQCAE------------AVDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCC-----BCC-SSSCCCCBCHHHHH------------HCSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCC-----EEE-ecCCCHHHHHHHhh------------CCCCCccCCceecCc
Confidence 3468877655321 111 258999 9999973 247899999998763
No 90
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=81.66 E-value=0.75 Score=26.13 Aligned_cols=25 Identities=24% Similarity=0.693 Sum_probs=13.5
Q ss_pred cCCCCCCCcceee---cCCCCeEEeccC
Q psy12853 96 IKCCPMCSVPIEK---DEGCAQMLCKRC 120 (137)
Q Consensus 96 ~~~CP~C~~~iek---~~gC~hm~C~~C 120 (137)
...||-|...+.. ...|.|+.|..|
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~C 32 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAFCYVC 32 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEESTTH
T ss_pred CCCCeeCCccccCCcEecCCCCeeHHHH
Confidence 4568888777643 123444444444
No 91
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=81.14 E-value=0.52 Score=29.14 Aligned_cols=33 Identities=21% Similarity=0.622 Sum_probs=20.1
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeecccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 133 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~ 133 (137)
...||-|...+.. -++-..||+.||..|...|-
T Consensus 22 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~ 54 (99)
T 2y43_A 22 LLRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFL 54 (99)
T ss_dssp HTBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHH
T ss_pred CCCcccCChhhCC-----cCEECCCCCHhhHHHHHHHH
Confidence 4579999877753 23333466666666655543
No 92
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=80.91 E-value=0.81 Score=29.95 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=22.5
Q ss_pred cCCCCCCCcceeec----CCCCeEEeccCccee
Q psy12853 96 IKCCPMCSVPIEKD----EGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~~iek~----~gC~hm~C~~C~~~f 124 (137)
.+-||.|+.++.-. .+-+.+.|+.||+.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 46799999887743 557789999999876
No 93
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=80.76 E-value=0.59 Score=29.39 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=20.4
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
...||-|...+.. -++-..||+.||..|...|
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 46 (108)
T 2ckl_A 15 HLMCVLCGGYFID-----ATTIIECLHSFCKTCIVRY 46 (108)
T ss_dssp GTBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHH
T ss_pred cCCCccCChHHhC-----cCEeCCCCChhhHHHHHHH
Confidence 4579999887743 3444347777777666555
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=80.37 E-value=0.6 Score=31.71 Aligned_cols=31 Identities=32% Similarity=0.784 Sum_probs=18.3
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
..||-|...+.. -++...||+.||+.|...|
T Consensus 55 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~ 85 (165)
T 2ckl_B 55 LMCPICLDMLKN-----TMTTKECLHRFCADCIITA 85 (165)
T ss_dssp HBCTTTSSBCSS-----EEEETTTCCEEEHHHHHHH
T ss_pred CCCcccChHhhC-----cCEeCCCCChhHHHHHHHH
Confidence 368888777653 2344346666666665544
No 95
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=80.29 E-value=1 Score=26.25 Aligned_cols=28 Identities=25% Similarity=0.518 Sum_probs=22.1
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeecc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWY 127 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~ 127 (137)
...+|..|+..+... -++|+ ||..||-.
T Consensus 14 ~~~rC~~C~kkvgl~----~f~Cr-Cg~~FC~~ 41 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVM----GFKCK-CGSTFCGS 41 (64)
T ss_dssp CSCSCTTTCCCCTTS----CEECT-TSCEECSS
T ss_pred cCCcChhhCCccccc----CeEee-cCCEeccc
Confidence 356899999887655 48995 99999974
No 96
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.69 E-value=1.1 Score=25.64 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=21.8
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeeccccccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
....||-|...+.. +.= .||+.||+.|...|..
T Consensus 14 ~~~~C~IC~~~~~~------~~~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 14 DEEECCICMDGRAD------LIL-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCCSSSCCSCCS------EEE-TTTEEECHHHHHHSSC
T ss_pred CCCCCeeCCcCccC------ccc-CCCCcccHHHHHHHHH
Confidence 35679988777643 333 4788888877776643
No 97
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=78.01 E-value=1 Score=29.62 Aligned_cols=31 Identities=29% Similarity=0.694 Sum_probs=18.7
Q ss_pred CCCCCCcceeecCCCCeEEeccCcceeeccccccccc
Q psy12853 98 CCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 98 ~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
.||-|...+.. -++-. ||+.||..|...|-.
T Consensus 55 ~C~iC~~~~~~-----~~~~~-CgH~fc~~Ci~~~~~ 85 (138)
T 4ayc_A 55 QCIICSEYFIE-----AVTLN-CAHSFCSYCINEWMK 85 (138)
T ss_dssp BCTTTCSBCSS-----EEEET-TSCEEEHHHHHHHTT
T ss_pred CCcccCcccCC-----ceECC-CCCCccHHHHHHHHH
Confidence 58888766632 23333 777777777666543
No 98
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=77.74 E-value=2.6 Score=25.84 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=25.8
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeecccccc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 131 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~ 131 (137)
....|..|+...... --.-.|+.||..||..|...
T Consensus 8 ~~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLF--KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSS--SCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCc--cccccCCCCCCEEChhHcCC
Confidence 456788888866433 23468999999999999754
No 99
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=77.67 E-value=1.7 Score=28.95 Aligned_cols=30 Identities=23% Similarity=0.774 Sum_probs=23.2
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccc
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
...-.||.|+..+.+.++. .+.||.|++++
T Consensus 25 ~~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 4467899999999887754 57888877665
No 100
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.48 E-value=0.82 Score=26.53 Aligned_cols=26 Identities=31% Similarity=0.922 Sum_probs=21.0
Q ss_pred ccccc-ccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 71 RCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 71 ~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
-|++. ||..|.. ..+.||.|+..|+.
T Consensus 32 pCgH~~~C~~C~~------------~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 32 PCRHTCLCDGCVK------------YFQQCPMCRQFVQE 58 (68)
T ss_dssp TTTBCCSCTTHHH------------HCSSCTTTCCCCCC
T ss_pred CCCChhhhHHHHh------------cCCCCCCCCcchhc
Confidence 47888 9999975 24789999999875
No 101
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=77.38 E-value=1.5 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=11.8
Q ss_pred ecCCCCeEEeccCccee
Q psy12853 108 KDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 108 k~~gC~hm~C~~C~~~f 124 (137)
|..|=-++.|+.||..|
T Consensus 41 k~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 41 RARNTGVISCTVCLEEF 57 (85)
T ss_dssp TTTTEEEEEESSSCCEE
T ss_pred ccCCEEEEEcccCCCeE
Confidence 44555578888888776
No 102
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=77.18 E-value=1.8 Score=31.33 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=34.1
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
..+....||-|...+. ..++= .||+.||..|-..|-.. +...||.|+.++..
T Consensus 204 ~~~~~~~c~i~~~~~~-----dPv~~-~~gh~f~~~~i~~~~~~-------~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFELMR-----EPCIT-PSGITYDRKDIEEHLQR-------VGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSBCS-----SEEEC-SSCCEEETTHHHHHHHH-------TCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCHhc-----CCeEC-CCCCEECHHHHHHHHHH-------CCCCCcCCCCCCch
Confidence 3455667887777663 23333 48999999998765321 12249999988854
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.61 E-value=2.5 Score=25.44 Aligned_cols=37 Identities=22% Similarity=0.635 Sum_probs=29.1
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccccccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+.....|..|+..+.. ....-.|..||..||..|..
T Consensus 15 ~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 15 KDDEATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGC
T ss_pred cCccCCcccCcCCcccC--ccccccCCCCCCEEChHHhC
Confidence 45557789999998753 34667899999999999975
No 104
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=76.10 E-value=0.8 Score=30.55 Aligned_cols=32 Identities=28% Similarity=0.747 Sum_probs=22.8
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeecccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLD 133 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~ 133 (137)
...||-|...+... ++. .||+.||..|...|-
T Consensus 31 ~~~C~IC~~~~~~p-----v~~-~CgH~FC~~Ci~~~~ 62 (141)
T 3knv_A 31 KYLCSACRNVLRRP-----FQA-QCGHRYCSFCLASIL 62 (141)
T ss_dssp GGBCTTTCSBCSSE-----EEC-TTSCEEEHHHHHHHG
T ss_pred CcCCCCCChhhcCc-----EEC-CCCCccCHHHHHHHH
Confidence 45799998877432 444 488888888877764
No 105
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=76.08 E-value=1.5 Score=29.70 Aligned_cols=33 Identities=18% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCcccCCC--CCCceeecCCCCeeecccccccccc
Q psy12853 46 ELIKCCPM--CSVPIEKDEGCAQMLCKRCKHVFCW 78 (137)
Q Consensus 46 ~~~~~CP~--C~~~i~~~~~~~~~~C~~C~~~fC~ 78 (137)
...+.||+ |+..+....-.++..|.+|+..+++
T Consensus 116 ~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 116 KLRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CCSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred ECcCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 34789997 9886555444468889999988875
No 106
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.65 E-value=2.7 Score=25.40 Aligned_cols=37 Identities=22% Similarity=0.500 Sum_probs=28.9
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccccccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+.....|..|...+.. -.+.-.|..||..||..|..
T Consensus 10 pd~~~~~C~~C~~~F~~--~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 10 PTNNFGNCTGCSATFSV--LKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp SCCCCSSCSSSCCCCCS--SSCCEECSSSCCEECTTTSC
T ss_pred cCCCCCcCcCcCCcccc--chhhhhhcCCCcEEChhhcC
Confidence 45557789999998743 34667899999999999965
No 107
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=75.64 E-value=0.92 Score=29.20 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=15.3
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
..||-|...+.. -++- .||+.||..|...|
T Consensus 53 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~ 82 (124)
T 3fl2_A 53 FQCICCQELVFR-----PITT-VCQHNVCKDCLDRS 82 (124)
T ss_dssp TBCTTTSSBCSS-----EEEC-TTSCEEEHHHHHHH
T ss_pred CCCCcCChHHcC-----cEEe-eCCCcccHHHHHHH
Confidence 357777666542 1222 35555555555443
No 108
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=75.12 E-value=0.48 Score=27.12 Aligned_cols=30 Identities=30% Similarity=0.706 Sum_probs=22.5
Q ss_pred ccccc-ccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 71 RCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 71 ~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
-||+. +|..|...|.. ....||-|+..|+.
T Consensus 27 pCgH~~~C~~C~~~~~~--------~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKK--------RNKPCPVCRQPIQM 57 (64)
T ss_dssp TEEEEEECHHHHHHHHH--------TTCCCTTTCCCCCE
T ss_pred CCCChhhHHHHHHHHHH--------cCCcCCCcCcchhc
Confidence 48888 89999875542 23579999999864
No 109
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=74.88 E-value=0.81 Score=29.09 Aligned_cols=36 Identities=25% Similarity=0.734 Sum_probs=26.2
Q ss_pred CCCCCCcceeecC---CCCeEEeccCc-------ceeecccccccc
Q psy12853 98 CCPMCSVPIEKDE---GCAQMLCKRCK-------HVFCWYCLASLD 133 (137)
Q Consensus 98 ~CP~C~~~iek~~---gC~hm~C~~C~-------~~fC~~C~~~~~ 133 (137)
-||+|..+|.-.+ -|+|+.|..|- ...|..|..++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 5899999996544 48888888774 346888877664
No 110
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=74.64 E-value=0.5 Score=31.91 Aligned_cols=49 Identities=20% Similarity=0.476 Sum_probs=34.4
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
...||-|...+.. .++ ..|++.||..|...|-.. ....||.|+..+...
T Consensus 78 ~~~C~IC~~~~~~-----pv~-~~CgH~fC~~Ci~~~~~~-------~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELVYQ-----PVT-TECFHNVCKDCLQRSFKA-------QVFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBCSS-----EEE-CTTSCEEEHHHHHHHHHT-------TCCBCTTTCCBCCTT
T ss_pred CCEeecCChhhcC-----CEE-cCCCCchhHHHHHHHHHh-------CCCcCCCCCccCCCC
Confidence 4578988776532 233 369999999998766432 234799999988654
No 111
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=74.51 E-value=0.46 Score=27.12 Aligned_cols=30 Identities=27% Similarity=0.640 Sum_probs=22.3
Q ss_pred ccccc-ccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 71 RCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 71 ~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
-||+. ||..|...+... ...||-|+..|+.
T Consensus 26 pCgH~~~C~~C~~~~~~~--------~~~CPiCR~~i~~ 56 (63)
T 2vje_B 26 RTGHLVTCFHCARRLKKA--------GASCPICKKEIQL 56 (63)
T ss_dssp TEEEEEECHHHHHHHHHT--------TCBCTTTCCBCCE
T ss_pred CCCCHhHHHHHHHHHHHh--------CCcCCCcCchhhc
Confidence 47888 999998654321 2589999999864
No 112
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.41 E-value=1.9 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.593 Sum_probs=22.4
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeecc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWY 127 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~ 127 (137)
...+|..|+..+... -+.|+ ||..||-.
T Consensus 24 ~~~RC~~C~kkvgL~----~f~Cr-Cg~~FCs~ 51 (74)
T 1wfp_A 24 TATRCLSCNKKVGVT----GFKCR-CGSTFCGT 51 (74)
T ss_dssp CCCBCSSSCCBCTTT----CEECT-TSCEECTT
T ss_pred cCccchhhcCccccc----ceEec-cCCEeccc
Confidence 456899999888665 48995 99999973
No 113
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=74.40 E-value=0.91 Score=29.05 Aligned_cols=31 Identities=26% Similarity=0.722 Sum_probs=20.3
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
...||-|...+... ++- .||+.||+.|...|
T Consensus 18 ~~~C~IC~~~~~~p-----~~~-~CgH~fC~~Ci~~~ 48 (118)
T 3hct_A 18 KYECPICLMALREA-----VQT-PCGHRFCKACIIKS 48 (118)
T ss_dssp GGBCTTTCSBCSSE-----EEC-TTSCEEEHHHHHHH
T ss_pred CCCCCcCChhhcCe-----EEC-CcCChhhHHHHHHH
Confidence 45799998777532 333 37777777776554
No 114
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=73.70 E-value=2.3 Score=31.41 Aligned_cols=29 Identities=24% Similarity=0.529 Sum_probs=23.7
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccc
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKH 74 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~ 74 (137)
...+|||.|+.+.....+.....|+.|+.
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~ 133 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRE 133 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSC
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCC
Confidence 34789999999998777777888988864
No 115
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=73.68 E-value=1.4 Score=29.38 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=23.3
Q ss_pred ccccCCCCCCCcceeec----CCCCeEEeccCccee
Q psy12853 93 SELIKCCPMCSVPIEKD----EGCAQMLCKRCKHVF 124 (137)
Q Consensus 93 ~~~~~~CP~C~~~iek~----~gC~hm~C~~C~~~f 124 (137)
....+-||.|+.++-.. .+.+.+.|+.|++.+
T Consensus 21 ~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 21 MTTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp -CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred ccCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 34578899998887433 256789999999865
No 116
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.47 E-value=1.9 Score=25.68 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=10.5
Q ss_pred Ccceeeccccccccc
Q psy12853 120 CKHVFCWYCLASLDV 134 (137)
Q Consensus 120 C~~~fC~~C~~~~~~ 134 (137)
||+.|+..|...|-.
T Consensus 48 C~H~FH~~Ci~~Wl~ 62 (81)
T 2ecl_A 48 CNHSFHNCCMSLWVK 62 (81)
T ss_dssp TSCEEEHHHHHHHTT
T ss_pred CCCccChHHHHHHHH
Confidence 777777777766644
No 117
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=73.00 E-value=0.86 Score=30.41 Aligned_cols=39 Identities=23% Similarity=0.608 Sum_probs=30.5
Q ss_pred CCCcccCCCCCCceeecCCCCeeecccccccccccccccc
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASR 84 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~ 84 (137)
..+...|..|...+-. .+.....|..|++.+|..|+...
T Consensus 52 ~~~~~~C~~C~~~~g~-l~~~g~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGM-LGSASVVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCST-TSCCEEECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCccc-ccCCCCCCCCCCcccccccCCcc
Confidence 3567789999998843 23456899999999999999854
No 118
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=72.10 E-value=2.9 Score=24.41 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=23.5
Q ss_pred cccCCCCCCceee-cCCCCeeeccccccccc
Q psy12853 48 IKCCPMCSVPIEK-DEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 48 ~~~CP~C~~~i~~-~~~~~~~~C~~C~~~fC 77 (137)
.+.||+|...-.. .-....+.|..|+..+|
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEE
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEe
Confidence 4679999986544 44677899999999888
No 119
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=72.05 E-value=1.5 Score=26.00 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=5.0
Q ss_pred cCCCCCCceee
Q psy12853 50 CCPMCSVPIEK 60 (137)
Q Consensus 50 ~CP~C~~~i~~ 60 (137)
.|++|+..++.
T Consensus 30 ~C~~CG~~~e~ 40 (70)
T 1twf_L 30 ICAECSSKLSL 40 (70)
T ss_dssp ECSSSCCEECC
T ss_pred ECCCCCCccee
Confidence 44455544433
No 120
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=71.99 E-value=2.6 Score=30.91 Aligned_cols=35 Identities=26% Similarity=0.576 Sum_probs=24.7
Q ss_pred cccCCCCCC-ceeecC---CCCeeecccccccccccccc
Q psy12853 48 IKCCPMCSV-PIEKDE---GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 48 ~~~CP~C~~-~i~~~~---~~~~~~C~~C~~~fC~~C~~ 82 (137)
-.|||+|+. .+..-+ -+..+.|+.|+..|=.+-+.
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~ 72 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKK 72 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEE
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcchhheecccc
Confidence 459999999 464433 36678899998877655554
No 121
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=71.84 E-value=2.7 Score=25.79 Aligned_cols=29 Identities=24% Similarity=0.686 Sum_probs=22.3
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcceeecc
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWY 127 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~ 127 (137)
...+|..|+..+... +-+.|+ ||..||-.
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~Cr-Cg~~FC~~ 52 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFECR-CGNNFCAS 52 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEECT-TCCEECTT
T ss_pred cCccchhhCCeeccc---CCeEcC-CCCEeccc
Confidence 356899999887554 358997 99999973
No 122
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.62 E-value=3.3 Score=25.00 Aligned_cols=37 Identities=22% Similarity=0.526 Sum_probs=29.0
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccccccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+.....|..|+..+.. -...-.|..||..||..|..
T Consensus 17 pd~~~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTT--TVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CTTTCCBCTTTCCBCCT--TSCCEECTTTCCEECTGGGC
T ss_pred cCCCCCCCcCcCCcccc--chhcccccCCCcEEChHHhC
Confidence 44557789999998754 34677899999999999975
No 123
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=71.29 E-value=3 Score=27.70 Aligned_cols=29 Identities=24% Similarity=0.799 Sum_probs=23.4
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
..-+||+|.....-..|= ...|..|+++|
T Consensus 26 ~lP~CP~C~seytYeDg~-l~vCPeC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGA-LLVCPECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSS-SEEETTTTEEE
T ss_pred cCCCCCCCCCcceEecCC-eEECCcccccc
Confidence 357899999988776664 47899999998
No 124
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=71.08 E-value=1.7 Score=33.44 Aligned_cols=43 Identities=26% Similarity=0.643 Sum_probs=29.7
Q ss_pred ccCCCCCCceeecCCCCeeeccccccc-ccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 49 KCCPMCSVPIEKDEGCAQMLCKRCKHV-FCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 49 ~~CP~C~~~i~~~~~~~~~~C~~C~~~-fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
..||-|-..+.. .+.= .||+. ||..|...| ..||-|+..|++.
T Consensus 296 ~~C~IC~~~~~~-----~v~l-pCgH~~fC~~C~~~~------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVS-----VVFI-PCGHLVVCQECAPSL------------RKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCC-----EEEE-TTCCEEECTTTGGGC------------SBCTTTCCBCCEE
T ss_pred CCCCccCCcCCc-----eEEc-CCCChhHhHHHHhcC------------CcCCCCCCCccCe
Confidence 467777665421 1111 58999 999998654 6899999998753
No 125
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=70.44 E-value=1.3 Score=30.06 Aligned_cols=31 Identities=26% Similarity=0.725 Sum_probs=22.0
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
.-.||-|...+... +++. ||+.||..|...|
T Consensus 18 ~~~C~IC~~~~~~p-----v~~~-CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 18 KYECPICLMALREA-----VQTP-CGHRFCKACIIKS 48 (170)
T ss_dssp GGBCTTTCSBCSSE-----EECT-TSCEEEHHHHHHH
T ss_pred CCCCCCCChhhcCc-----EECC-CCCHHHHHHHHHH
Confidence 45799998877542 5554 8888888877665
No 126
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.97 E-value=0.34 Score=29.80 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=30.7
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCC--CCcc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPM--CSVP 105 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~--C~~~ 105 (137)
...||-|-..+.. ...+.=..|++.||..|...+-...-........+||. |+..
T Consensus 5 ~~~C~IC~~~~~~---~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV---EQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG---GGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc---ccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4457766654432 22222235899999999875433211000112468998 9887
No 127
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.66 E-value=3 Score=27.26 Aligned_cols=37 Identities=22% Similarity=0.645 Sum_probs=28.6
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccccccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+.....|+.|+..+.. ....-.|..||..||..|..
T Consensus 65 ~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 65 EDNEVQNCMACGKGFSV--TVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CGGGCCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSC
T ss_pred cCCCCCCCcCcCCcccc--ccccccCCCCCeEEChHHhC
Confidence 34456789999987753 34667899999999999975
No 128
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=68.62 E-value=2.9 Score=28.98 Aligned_cols=26 Identities=19% Similarity=0.589 Sum_probs=21.7
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcce
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHV 123 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~ 123 (137)
.-.|++|+.+..+.+ ++|.|..||..
T Consensus 140 ~a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 140 RALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp ECBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred EecccccCCceEECC--CEEECCCCCCE
Confidence 348999999998866 99999999864
No 129
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=67.62 E-value=3 Score=28.25 Aligned_cols=32 Identities=19% Similarity=0.490 Sum_probs=25.9
Q ss_pred ccCCCCC--CCcceeecCCCCeEEeccCcceeec
Q psy12853 95 LIKCCPM--CSVPIEKDEGCAQMLCKRCKHVFCW 126 (137)
Q Consensus 95 ~~~~CP~--C~~~iek~~gC~hm~C~~C~~~fC~ 126 (137)
.-+.||+ |+.-+.-...=+...|.+||+.+++
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 3678999 9987776655578999999998875
No 130
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=67.12 E-value=1.8 Score=34.02 Aligned_cols=48 Identities=25% Similarity=0.602 Sum_probs=33.1
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
...||-|-..+. ..+ -..||+.||..|...|-.. ....||.|+..+..
T Consensus 332 ~~~C~ICle~~~-----~pv-~lpCGH~FC~~Ci~~wl~~-------~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDK-----DVK-IEPCGHLMCTSCLTSWQES-------EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBC-----CEE-EETTCCEECHHHHHHHHHH-------TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCC-----CeE-EeCCCChhhHHHHHHHHhc-------CCCCCCCCCCccCC
Confidence 467888865542 112 2369999999999877431 24579999998865
No 131
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=65.40 E-value=5.1 Score=27.57 Aligned_cols=25 Identities=24% Similarity=0.614 Sum_probs=15.0
Q ss_pred CcccCCCCCCceeecCCCCeeecccccc
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKH 74 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~ 74 (137)
...-|+.|++.... . .+-.||.|+.
T Consensus 137 ~~~~C~~CG~i~~~--~-~p~~CP~Cg~ 161 (170)
T 3pwf_A 137 KVYICPICGYTAVD--E-APEYCPVCGA 161 (170)
T ss_dssp CEEECTTTCCEEES--C-CCSBCTTTCC
T ss_pred CeeEeCCCCCeeCC--C-CCCCCCCCCC
Confidence 34448888887662 2 2237777764
No 132
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.16 E-value=4.8 Score=23.27 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=23.5
Q ss_pred cccCCCCCCceee-cCCCCeeeccccccccc
Q psy12853 48 IKCCPMCSVPIEK-DEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 48 ~~~CP~C~~~i~~-~~~~~~~~C~~C~~~fC 77 (137)
.+.||+|...-.. ......+.|..|+..+|
T Consensus 15 ~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 15 RVKCIDCGNEQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp EEECSSSCCEEEEESSCSSCEECSSSCCEEE
T ss_pred EEECCCCCCeeEEEecCCeEEEccCcCCEEe
Confidence 4679999986544 44677899999999887
No 133
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.13 E-value=3.7 Score=24.67 Aligned_cols=39 Identities=18% Similarity=0.502 Sum_probs=31.1
Q ss_pred CCCcccCCCCCCceeecCCCCeeecccccccccccccccc
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASR 84 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~ 84 (137)
....+.|..|..++-. -...-..|+.|.+..|..|+...
T Consensus 22 ~~~~r~CarC~~~LG~-l~~~g~~C~~Ck~rVC~~Crv~~ 60 (76)
T 2csz_A 22 HYSDRTCARCQESLGR-LSPKTNTCRGCNHLVCRDCRIQE 60 (76)
T ss_dssp TCCCCBCSSSCCBCSS-SCTTTSEETTTTEECCTTSEEEC
T ss_pred CCCccchhhhCccccc-cccCCCcCcccChhhcccccccC
Confidence 4667889999998754 33566789999999999999764
No 134
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=63.51 E-value=5.1 Score=24.31 Aligned_cols=29 Identities=17% Similarity=0.643 Sum_probs=23.1
Q ss_pred ccCCCCCCceee-cCCCCeeeccccccccc
Q psy12853 49 KCCPMCSVPIEK-DEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 49 ~~CP~C~~~i~~-~~~~~~~~C~~C~~~fC 77 (137)
+.||+|...-.. ......+.|..|+..+|
T Consensus 33 VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~ 62 (81)
T 2xzm_6 33 VKCAQCQNIQMIFSNAQSTIICEKCSAILC 62 (81)
T ss_dssp EECSSSCCEEEEETTCSSCEECSSSCCEEE
T ss_pred eECCCCCCeeEEEecCccEEEccCCCCEEe
Confidence 569999986554 44677899999999888
No 135
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=63.14 E-value=6.9 Score=26.13 Aligned_cols=46 Identities=20% Similarity=0.360 Sum_probs=29.5
Q ss_pred cccccchhhhHHHHhhccccccCCCCcccCCCCCCc---eeecCCCCeeeccccccc
Q psy12853 22 NKLGHSRASVIWHRTQVSGATFDSELIKCCPMCSVP---IEKDEGCAQMLCKRCKHV 75 (137)
Q Consensus 22 ~~l~~~~~~~~~~r~~~~~a~~~~~~~~~CP~C~~~---i~~~~~~~~~~C~~C~~~ 75 (137)
..+....+.....++ +.. ++-||.|+.+ +.++++.-...|..||..
T Consensus 84 G~~~~~~i~~~L~~y-I~~-------yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 84 GKFTHFLINERIEDY-VNK-------FVICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp SSCSSSHHHHHHHHH-HTH-------HHHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred eeeCHHHHHHHHHHH-Hhh-------EEECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 334444455444444 322 7889999886 445566778889888864
No 136
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=62.44 E-value=17 Score=23.26 Aligned_cols=9 Identities=22% Similarity=1.113 Sum_probs=4.9
Q ss_pred eeecccccc
Q psy12853 123 VFCWYCLAS 131 (137)
Q Consensus 123 ~fC~~C~~~ 131 (137)
.+||.|++.
T Consensus 106 ~~Cy~Cg~~ 114 (124)
T 2lli_A 106 IYCYNCGGK 114 (124)
T ss_dssp CCTTTTSSS
T ss_pred CCcCCCCCC
Confidence 456666553
No 137
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.23 E-value=5.7 Score=28.22 Aligned_cols=33 Identities=30% Similarity=0.748 Sum_probs=24.4
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcceeecccccc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 131 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~ 131 (137)
..|+.|+...... --.-.|+.||..||..|...
T Consensus 162 ~~C~~C~~~F~~~--~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFT--NRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSS--SCCEECTTTCCEECSTTSCE
T ss_pred CccCCCCCccCCc--ccccccCCcCCEEChHHhCC
Confidence 5788888766322 23467899999999999764
No 138
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=62.07 E-value=5.1 Score=24.53 Aligned_cols=35 Identities=26% Similarity=0.550 Sum_probs=26.8
Q ss_pred CcccCCCCCCceeecCCCCeeeccccccccccccccc
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 83 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~ 83 (137)
....|..|...+.. ....-.|..||..||..|...
T Consensus 19 ~~~~C~~C~~~F~~--~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 19 EAPNCMNCQVKFTF--TKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp GCCBCTTTCCBCCS--SSCCEECTTTCCEECGGGSCE
T ss_pred cCCcCcCCCCcccc--hhhCccccCCCCEECCcccCC
Confidence 35568889887653 345678999999999999763
No 139
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=61.50 E-value=5.4 Score=27.02 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=23.1
Q ss_pred cccCCCCCCc---eeecCCCCeeeccccccccccccccc
Q psy12853 48 IKCCPMCSVP---IEKDEGCAQMLCKRCKHVFCWYCLAS 83 (137)
Q Consensus 48 ~~~CP~C~~~---i~~~~~~~~~~C~~C~~~fC~~C~~~ 83 (137)
++-||.|+.+ +.++++.-...|..||...=..-..+
T Consensus 104 yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~ 142 (148)
T 2d74_B 104 YVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLE 142 (148)
T ss_dssp HSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC---
T ss_pred EEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhh
Confidence 6789999886 34445566778888887655444443
No 140
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=61.18 E-value=3 Score=26.84 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=8.3
Q ss_pred CCcccCCCCCCceee
Q psy12853 46 ELIKCCPMCSVPIEK 60 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~ 60 (137)
+...+|++|+..+..
T Consensus 71 p~~~~C~~CG~~~e~ 85 (119)
T 2kdx_A 71 KVELECKDCSHVFKP 85 (119)
T ss_dssp CCEEECSSSSCEECS
T ss_pred cceEEcCCCCCEEeC
Confidence 445566666655543
No 141
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=60.49 E-value=4.7 Score=20.46 Aligned_cols=26 Identities=27% Similarity=0.657 Sum_probs=17.1
Q ss_pred cCCCCCCc---eeecCCCCeeeccccccc
Q psy12853 50 CCPMCSVP---IEKDEGCAQMLCKRCKHV 75 (137)
Q Consensus 50 ~CP~C~~~---i~~~~~~~~~~C~~C~~~ 75 (137)
.||.|+.+ +.+..+.....|..||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 57888876 334455566778777764
No 142
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=59.52 E-value=6 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=23.2
Q ss_pred cccCCCCCCceeec-CCCCeeeccccccccc
Q psy12853 48 IKCCPMCSVPIEKD-EGCAQMLCKRCKHVFC 77 (137)
Q Consensus 48 ~~~CP~C~~~i~~~-~~~~~~~C~~C~~~fC 77 (137)
.+.||+|...-... .....+.|..|+..+|
T Consensus 34 ~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~ 64 (82)
T 3u5c_b 34 DVKCPGCLNITTVFSHAQTAVTCESCSTILC 64 (82)
T ss_dssp EEECTTSCSCEEEESBCSSCCCCSSSCCCCE
T ss_pred EEECCCCCCeeEEEecCCeEEEccccCCEEe
Confidence 46799999865543 4667888999998887
No 143
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=59.47 E-value=4.1 Score=26.56 Aligned_cols=37 Identities=24% Similarity=0.633 Sum_probs=25.8
Q ss_pred CCCcccCCCCCCceeecCCCCeeeccccccccccccccc
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 83 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~ 83 (137)
+.....|..|+..+.. -...-.|..||..||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~--~~RkHHCR~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 16 TGLEPSCKSCGAHFAN--TARKQTCLDCKKNFCMTCSSQ 52 (120)
T ss_dssp ----CCCTTTCCCCSS--GGGCEECTTTCCEECGGGEEC
T ss_pred ccccCcccCcCCcccc--ccccccCCCCCCeeCHHHhCC
Confidence 3445678889988743 245678999999999999753
No 144
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=59.33 E-value=7.6 Score=26.34 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=30.6
Q ss_pred CcccCCCCCCceeecCCCCeeecccccccccccccccccCC
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYG 87 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~ 87 (137)
+...|..|..++-.. ......|..|++.+|..|+. |+..
T Consensus 67 ~~~~C~~C~~~fg~l-~~~g~~C~~C~~~VC~~C~~-~~~~ 105 (153)
T 2zet_C 67 NETHCARCLQPYRLL-LNSRRQCLECSLFVCKSCSH-AHPE 105 (153)
T ss_dssp GGTBCTTTCCBGGGC-SSCCEECTTTCCEECGGGEE-CCSS
T ss_pred CCccchhhcCccccc-cCCCCcCCCCCchhhccccc-ccCC
Confidence 567899999987654 34578999999999999995 4544
No 145
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=59.23 E-value=6.1 Score=24.22 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=23.9
Q ss_pred cccCCCCCCceeec-CCCCeeeccccccccc
Q psy12853 48 IKCCPMCSVPIEKD-EGCAQMLCKRCKHVFC 77 (137)
Q Consensus 48 ~~~CP~C~~~i~~~-~~~~~~~C~~C~~~fC 77 (137)
.+.||+|...-... .....+.|..|+..+|
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCS
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEee
Confidence 37899999975544 4677899999999988
No 146
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.13 E-value=11 Score=22.24 Aligned_cols=51 Identities=20% Similarity=0.424 Sum_probs=34.1
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCccee
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~ie 107 (137)
.....|+-|...+.. ...|+.|++.|=..|...|-.. .....||.|+...+
T Consensus 13 ~~i~~C~IC~~~i~~-----g~~C~~C~h~fH~~Ci~kWl~~------~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ-----GQSCETCGIRMHLPCVAKYFQS------NAEPRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSS-----SEECSSSCCEECHHHHHHHSTT------CSSCCCTTTCSCCC
T ss_pred CCCCcCcchhhHccc-----CCccCCCCchhhHHHHHHHHHh------cCCCCCCCCcCcCC
Confidence 446778888888852 3467777777777776655432 12368999988765
No 147
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=58.37 E-value=5.7 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=21.4
Q ss_pred CcccCCCCCCceeecCCCCeeecccccccccc
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCW 78 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~ 78 (137)
..+.||+|+..+....-..+..|.+|+..+.+
T Consensus 112 ~~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 112 QQKGCPKCGPGIFMAKHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp CSEECSTTCSSCEEEECSSCEEETTTCCCBCC
T ss_pred ccccCCccCCCccccCccCCCccCCceeEEEe
Confidence 46889999965433332335589888888764
No 148
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=56.59 E-value=9.2 Score=21.49 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=33.0
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeecC
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDE 110 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~ 110 (137)
....+||-|+.+. +++...++|-.|...|=..|...... .......-.||.|...-.+.+
T Consensus 4 ~e~~~C~~C~~~~--~~~~~mI~Cd~C~~WfH~~Cvgl~~~---~~~~~~~~~C~~C~~k~~~~s 63 (64)
T 1we9_A 4 GSSGQCGACGESY--AADEFWICCDLCEMWFHGKCVKITPA---RAEHIKQYKCPSCSNKSGPSS 63 (64)
T ss_dssp SSCCCCSSSCCCC--CSSSCEEECSSSCCEEETTTTTCCTT---GGGGCSSCCCHHHHTTTCSSC
T ss_pred CCCCCCCCCCCcc--CCCCCEEEccCCCCCCCccccCcChh---HhcCCCcEECCCCcCcCCCCC
Confidence 4467899898774 34567888987765554455432111 111112345777755444433
No 149
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=55.80 E-value=6.5 Score=28.98 Aligned_cols=26 Identities=31% Similarity=0.828 Sum_probs=18.4
Q ss_pred cCCCCCCCcceeec--CCCCeEEeccCc
Q psy12853 96 IKCCPMCSVPIEKD--EGCAQMLCKRCK 121 (137)
Q Consensus 96 ~~~CP~C~~~iek~--~gC~hm~C~~C~ 121 (137)
.++||.|+.+|++. +|=.-..|..|+
T Consensus 235 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 235 GLPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp TSBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 57999999999984 554445555554
No 150
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=55.09 E-value=5.2 Score=23.41 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=23.1
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcceeeccccc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 130 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~ 130 (137)
..|..|+...... --.-.|+.||..||..|..
T Consensus 12 ~~C~~C~~~F~~~--~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLL--NRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECGGGSC
T ss_pred CcccCCCCccCCc--cccccCCCCCEEEcccccC
Confidence 3677887765432 2246788999999999975
No 151
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=54.46 E-value=3.4 Score=27.53 Aligned_cols=10 Identities=30% Similarity=0.896 Sum_probs=6.3
Q ss_pred cCCCCCCCcc
Q psy12853 96 IKCCPMCSVP 105 (137)
Q Consensus 96 ~~~CP~C~~~ 105 (137)
..+||.|+..
T Consensus 107 ~~~CP~Cgs~ 116 (139)
T 3a43_A 107 FLACPKCGSH 116 (139)
T ss_dssp GCSCSSSSCC
T ss_pred CCcCccccCC
Confidence 3467777665
No 152
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=53.50 E-value=2.8 Score=27.19 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=0.0
Q ss_pred CCCeEEeccCcceeeccccccccc
Q psy12853 111 GCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 111 gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
.|..+.-. |++.|+..|...|-.
T Consensus 76 ~~~v~~~~-C~H~FH~~CI~~Wl~ 98 (117)
T 4a0k_B 76 ECTVAWGV-CNHAFHFHCISRWLK 98 (117)
T ss_dssp ------------------------
T ss_pred ccccccCC-cCceEcHHHHHHHHH
Confidence 34444443 777777777776654
No 153
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.48 E-value=5.1 Score=23.12 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=7.1
Q ss_pred ccCCCCCCCcce
Q psy12853 95 LIKCCPMCSVPI 106 (137)
Q Consensus 95 ~~~~CP~C~~~i 106 (137)
...+||.|+..|
T Consensus 37 ~~iRC~~CG~RI 48 (63)
T 3h0g_L 37 EVIRCRECGHRV 48 (63)
T ss_dssp SCCCCSSSCCCC
T ss_pred CceECCCCCcEE
Confidence 345677776544
No 154
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=53.32 E-value=6.6 Score=24.77 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=13.9
Q ss_pred CCCeEEeccCcceeeccccccccc
Q psy12853 111 GCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 111 gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
+|.-+.=. ||+.|+..|...|-.
T Consensus 65 ~~~~~~~~-C~H~FH~~Ci~~Wl~ 87 (106)
T 3dpl_R 65 ECTVAWGV-CNHAFHFHCISRWLK 87 (106)
T ss_dssp CCCEEEET-TSCEEEHHHHHHHHT
T ss_pred cceEeecc-cCcEECHHHHHHHHH
Confidence 44444443 777777777766643
No 155
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=53.21 E-value=8.5 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.589 Sum_probs=19.8
Q ss_pred cccCCCCCCceeecCCCCeeeccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHV 75 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~ 75 (137)
...|+.|+.++.+.+ +.++||.|+..
T Consensus 140 ~a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 140 RALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp ECBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred EecccccCCceEECC--CEEECCCCCCE
Confidence 457788888887744 78999988754
No 156
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=52.78 E-value=6 Score=29.30 Aligned_cols=26 Identities=38% Similarity=0.832 Sum_probs=18.1
Q ss_pred cCCCCCCCcceeec--CCCCeEEeccCc
Q psy12853 96 IKCCPMCSVPIEKD--EGCAQMLCKRCK 121 (137)
Q Consensus 96 ~~~CP~C~~~iek~--~gC~hm~C~~C~ 121 (137)
.++||.|+.+|++. +|=.-..|..|+
T Consensus 245 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 245 GNPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred cCCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 57999999999984 564444555443
No 157
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=52.75 E-value=6 Score=29.21 Aligned_cols=26 Identities=27% Similarity=0.618 Sum_probs=18.1
Q ss_pred cCCCCCCCcceeec--CCCCeEEeccCc
Q psy12853 96 IKCCPMCSVPIEKD--EGCAQMLCKRCK 121 (137)
Q Consensus 96 ~~~CP~C~~~iek~--~gC~hm~C~~C~ 121 (137)
.++||.|+.+|++. +|=.-..|..|+
T Consensus 242 G~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 242 GEKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 57899999999984 554444555444
No 158
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=52.43 E-value=6.1 Score=29.14 Aligned_cols=26 Identities=27% Similarity=0.724 Sum_probs=18.1
Q ss_pred cCCCCCCCcceeec--CCCCeEEeccCc
Q psy12853 96 IKCCPMCSVPIEKD--EGCAQMLCKRCK 121 (137)
Q Consensus 96 ~~~CP~C~~~iek~--~gC~hm~C~~C~ 121 (137)
.++||.|+.+|++. +|=.-..|..|+
T Consensus 240 g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 240 GEPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp TSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCCEeeEEEECCCceEECCCCC
Confidence 47899999999984 554444555443
No 159
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=51.30 E-value=6.6 Score=28.86 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=18.7
Q ss_pred ccCCCCCCCcceeec--CCCCeEEeccCc
Q psy12853 95 LIKCCPMCSVPIEKD--EGCAQMLCKRCK 121 (137)
Q Consensus 95 ~~~~CP~C~~~iek~--~gC~hm~C~~C~ 121 (137)
..++||.|+.+|++. +|=.-..|..|+
T Consensus 233 ~g~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 233 DGEPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp TTSBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CcCCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 356899999999984 554445555554
No 160
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=51.20 E-value=11 Score=26.39 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=21.2
Q ss_pred CcccCCCCCC---ceeecCCCCeeecccccccc
Q psy12853 47 LIKCCPMCSV---PIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 47 ~~~~CP~C~~---~i~~~~~~~~~~C~~C~~~f 76 (137)
....||.|+. -+..+.......|..||..+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 3558999998 35665566677887777654
No 161
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=50.96 E-value=12 Score=23.22 Aligned_cols=50 Identities=4% Similarity=-0.068 Sum_probs=34.7
Q ss_pred CCCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.+....||-|...+. ..+.= .||+.||..|-..|-.. ...||.|+..+..
T Consensus 26 ~p~~~~CpI~~~~m~-----dPV~~-~cGhtf~r~~I~~~l~~--------~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMT-----DPVRL-PSGTIMDRSIILRHLLN--------SPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCS-----SEEEE-TTTEEEEHHHHHHHTTS--------CSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCccc-----CCeEC-CCCCEEchHHHHHHHHc--------CCCCCCCCCCCCh
Confidence 355678888777653 23333 38999999998876543 2479999988754
No 162
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=50.81 E-value=6.9 Score=27.53 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=22.1
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeec
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCW 126 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~ 126 (137)
.+.||+|+..+.-...=+...|..|++.|.|
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRHYCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCEEETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCCccCCceeEEEe
Confidence 5789999976555433334599999988865
No 163
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=49.42 E-value=7.2 Score=23.17 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=19.8
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
.......||.|+..-.+-.......|.+|+..|
T Consensus 23 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred hcccCccCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 445577899998743332334456676666554
No 164
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=49.29 E-value=9.4 Score=29.05 Aligned_cols=29 Identities=28% Similarity=0.616 Sum_probs=21.2
Q ss_pred cccCCCCCCc---eeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVP---IEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~---i~~~~~~~~~~C~~C~~~f 76 (137)
...||.|+.. +..+.......|..||...
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 5689999884 5555556677888887765
No 165
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=48.52 E-value=9.5 Score=19.14 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=11.2
Q ss_pred cCCCCCCCcceee
Q psy12853 96 IKCCPMCSVPIEK 108 (137)
Q Consensus 96 ~~~CP~C~~~iek 108 (137)
.-+|+.|+..|+.
T Consensus 6 fY~C~~CGnivev 18 (36)
T 1dxg_A 6 VYKCELCGQVVKV 18 (36)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEcCCCCcEEEE
Confidence 4579999999997
No 166
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=47.57 E-value=10 Score=20.54 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=5.4
Q ss_pred cCCCCCCCcce
Q psy12853 96 IKCCPMCSVPI 106 (137)
Q Consensus 96 ~~~CP~C~~~i 106 (137)
..+||-|+..|
T Consensus 23 ~IrCpyCGyri 33 (48)
T 4ayb_P 23 GVRCPYCGYKI 33 (48)
T ss_dssp SSCCTTTCCSC
T ss_pred CcccCccCcEE
Confidence 34555555443
No 167
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=46.98 E-value=11 Score=26.95 Aligned_cols=31 Identities=26% Similarity=0.684 Sum_probs=23.2
Q ss_pred cCCCCCCceeecCCCCeeecccccccccccccc
Q psy12853 50 CCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 50 ~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.|..|...+.. -.+.-.|..||..||..|..
T Consensus 166 ~C~~C~~~F~~--~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 166 ECHRCRVQFGV--MTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp BCTTTCCBCBT--TBCCEECTTTCCEECTTTCC
T ss_pred CCcCcCCCCCc--cccccccCCCcCEeChhhcC
Confidence 56677766542 34567899999999999975
No 168
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=46.33 E-value=21 Score=19.58 Aligned_cols=8 Identities=38% Similarity=1.032 Sum_probs=4.5
Q ss_pred CCCCCCCc
Q psy12853 97 KCCPMCSV 104 (137)
Q Consensus 97 ~~CP~C~~ 104 (137)
.+||+|+.
T Consensus 16 ~~Cp~Cg~ 23 (57)
T 1qyp_A 16 ITCPKCGN 23 (57)
T ss_dssp CCCTTTCC
T ss_pred eECCCCCC
Confidence 45666654
No 169
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=45.18 E-value=8.6 Score=28.56 Aligned_cols=50 Identities=26% Similarity=0.523 Sum_probs=31.7
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCC--CCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPM--CSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~--C~~~iek 108 (137)
...||=|...+ ...|+-..||+.||..|-..|-.. .....||. |+..+..
T Consensus 181 el~CPIcl~~f-----~DPVts~~CGHsFcR~cI~~~~~~------~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPY-----EAPLISRKCNHVFDRDGIQNYLQG------YTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBC-----SSEEEESSSCCEEEHHHHHHHSTT------CSCEECSGGGCSCEECG
T ss_pred eeECcCccCcc-----cCCeeeCCCCCcccHHHHHHHHHh------CCCCCCCcccccCcCch
Confidence 34566555554 233443468999999998765432 12357998 9887754
No 170
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=44.94 E-value=11 Score=21.48 Aligned_cols=23 Identities=26% Similarity=0.733 Sum_probs=13.4
Q ss_pred CcccCCCCCCceeecCCCCeeeccccccc
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHV 75 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~ 75 (137)
..+.||.|+..-. .-+||.||..
T Consensus 5 ~mr~C~~CgvYTL------k~~CP~CG~~ 27 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICPKCGEK 27 (60)
T ss_dssp CCEECTTTCCEES------SSBCSSSCSB
T ss_pred hceeCCCCCCEec------cccCcCCCCc
Confidence 3567777766544 2346666654
No 171
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=43.76 E-value=6 Score=23.48 Aligned_cols=29 Identities=21% Similarity=0.427 Sum_probs=18.1
Q ss_pred cccCCCCCCceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~f 76 (137)
...||.|+..-.+-.......|.+|+..|
T Consensus 26 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 26 RYDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp CBCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred CccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 56799998764443444555666665554
No 172
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.60 E-value=20 Score=24.45 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=20.0
Q ss_pred cccCCCCCCc---eee--cCCCCeeecccccccc
Q psy12853 48 IKCCPMCSVP---IEK--DEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~~---i~~--~~~~~~~~C~~C~~~f 76 (137)
++-||.|+.+ +.+ ..+.....|..||+..
T Consensus 103 YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 103 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 6789999987 343 2345677788887653
No 173
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=43.48 E-value=12 Score=22.22 Aligned_cols=50 Identities=6% Similarity=-0.083 Sum_probs=34.0
Q ss_pred CCCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.+....||-|...+. ..++= .||+.||..|-..|-.. ...||.|+..+..
T Consensus 11 ~p~~~~CpI~~~~m~-----dPV~~-~cGhtf~r~~I~~~l~~--------~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 11 APDEFRDPLMDTLMT-----DPVRL-PSGTVMDRSIILRHLLN--------SPTDPFNRQMLTE 60 (85)
T ss_dssp CCTTTBCTTTCSBCS-----SEEEC-TTSCEEEHHHHHHHHHH--------CSBCTTTCCBCCG
T ss_pred CchheECcccCchhc-----CCeEC-CCCCEECHHHHHHHHhc--------CCCCCCCcCCCCh
Confidence 355667887777663 23333 38999999998766432 2579999887754
No 174
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=42.71 E-value=17 Score=24.60 Aligned_cols=26 Identities=23% Similarity=0.680 Sum_probs=18.7
Q ss_pred cccCCCCCCceeec--C--CCCeeeccccc
Q psy12853 48 IKCCPMCSVPIEKD--E--GCAQMLCKRCK 73 (137)
Q Consensus 48 ~~~CP~C~~~i~~~--~--~~~~~~C~~C~ 73 (137)
.+|||.|+..+... + ......|+.|+
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 67999999988653 2 23456788777
No 175
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=41.81 E-value=12 Score=20.27 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=6.5
Q ss_pred CCeeecccccccc
Q psy12853 64 CAQMLCKRCKHVF 76 (137)
Q Consensus 64 ~~~~~C~~C~~~f 76 (137)
...+.|+.|+..|
T Consensus 37 ~k~~~C~~C~k~f 49 (62)
T 1vd4_A 37 TGTFRCTFCHTEV 49 (62)
T ss_dssp TTEEBCSSSCCBC
T ss_pred CCCEECCCCCCcc
Confidence 3445555555544
No 176
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=41.51 E-value=4.6 Score=26.24 Aligned_cols=32 Identities=22% Similarity=0.477 Sum_probs=20.0
Q ss_pred CCcccCCCCCCceeecCCCCeeeccccccccc
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC 77 (137)
.....||.|+..-.+-.......|..|+..|=
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk~fA 89 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDYKFT 89 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCCEEE
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCCEEE
Confidence 44678999988433323345677777766654
No 177
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=41.24 E-value=18 Score=25.01 Aligned_cols=30 Identities=23% Similarity=0.465 Sum_probs=20.5
Q ss_pred cccCCCCCCc---eee--cCCCCeeeccccccccc
Q psy12853 48 IKCCPMCSVP---IEK--DEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 48 ~~~CP~C~~~---i~~--~~~~~~~~C~~C~~~fC 77 (137)
++.||.|+.+ +.+ ..+...+.|..||+..=
T Consensus 96 YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 96 FVLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HHSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred eEECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 7889999987 444 23455677888776543
No 178
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=41.18 E-value=6 Score=33.67 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=45.7
Q ss_pred cCCCCcccCCCCCCceeecC----CCCeeeccccc--------------------ccccccccccccCCCCcccccccCC
Q psy12853 43 FDSELIKCCPMCSVPIEKDE----GCAQMLCKRCK--------------------HVFCWYCLASRDYGGATFDSELIKC 98 (137)
Q Consensus 43 ~~~~~~~~CP~C~~~i~~~~----~~~~~~C~~C~--------------------~~fC~~C~~~~h~~~~~~~~~~~~~ 98 (137)
...++.--||+|-.-+.-.. .-+.+.|..|| ..+|-.|..||+.+...--.+.-.-
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 35577777777776554221 24567788887 5679999999988865444555668
Q ss_pred CCCCCcceee
Q psy12853 99 CPMCSVPIEK 108 (137)
Q Consensus 99 CP~C~~~iek 108 (137)
||.|+=.+..
T Consensus 186 C~~CGP~l~l 195 (761)
T 3vth_A 186 CFDCGPSLSF 195 (761)
T ss_dssp CTTTSCCEEE
T ss_pred CCccCCeeEE
Confidence 9999877654
No 179
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=40.18 E-value=6 Score=30.65 Aligned_cols=58 Identities=17% Similarity=0.441 Sum_probs=0.0
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
...|+.|+..+.. ....-.|..||..||..|....- +.........+-|-.|-..+.+
T Consensus 375 ~~~c~~c~~~f~~--~~r~h~Cr~Cg~~~C~~Cs~~~~-~~~~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 375 VMMCMNCGCDFSL--TLRRHHCHACGKIVCRNCSRNKY-PLKYLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp -------------------------------------------------------------
T ss_pred CCcCCCcCCCCCC--cchhhhcccCcCEeehhhCCCee-eCCCCCCCcCEecHHHHHHHHh
Confidence 4567788876642 23456788999999999975321 1111123346777777666543
No 180
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=39.99 E-value=14 Score=23.09 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=6.2
Q ss_pred ccCCCCCCceee
Q psy12853 49 KCCPMCSVPIEK 60 (137)
Q Consensus 49 ~~CP~C~~~i~~ 60 (137)
.-||.|..++..
T Consensus 9 LaCP~cK~pL~l 20 (97)
T 2k5r_A 9 LCSPDTRQPLSL 20 (97)
T ss_dssp CCCCTTSSCCEE
T ss_pred eECCCCCCcccc
Confidence 345555555544
No 181
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=39.44 E-value=19 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.559 Sum_probs=14.6
Q ss_pred cCCCCCCCc----ceeecCCCCeEEeccCcce
Q psy12853 96 IKCCPMCSV----PIEKDEGCAQMLCKRCKHV 123 (137)
Q Consensus 96 ~~~CP~C~~----~iek~~gC~hm~C~~C~~~ 123 (137)
-.+||.|+- .+. ..| +..|.+||+.
T Consensus 14 ~~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLF-SDG--HTFCYVCEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEE-TTS--CEEETTTCCE
T ss_pred CCcCCCCCCCCCceEe-CCC--CeecccCCCc
Confidence 347888865 333 234 4677667653
No 182
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=38.74 E-value=16 Score=24.54 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=9.6
Q ss_pred CCCCCCCcceeec
Q psy12853 97 KCCPMCSVPIEKD 109 (137)
Q Consensus 97 ~~CP~C~~~iek~ 109 (137)
..||.|+..+.+.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 4788888887664
No 183
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.34 E-value=33 Score=18.49 Aligned_cols=10 Identities=20% Similarity=0.976 Sum_probs=6.4
Q ss_pred EEeccCccee
Q psy12853 115 MLCKRCKHVF 124 (137)
Q Consensus 115 m~C~~C~~~f 124 (137)
..|..||+.|
T Consensus 38 y~C~~Cg~~w 47 (50)
T 1tfi_A 38 VVCNECGNRW 47 (50)
T ss_dssp EEESSSCCEE
T ss_pred EEcCCCCCeE
Confidence 5666677654
No 184
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=37.83 E-value=7 Score=26.14 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=16.8
Q ss_pred CCcccCCCCCCc---eeecCCCCeeeccccccc
Q psy12853 46 ELIKCCPMCSVP---IEKDEGCAQMLCKRCKHV 75 (137)
Q Consensus 46 ~~~~~CP~C~~~---i~~~~~~~~~~C~~C~~~ 75 (137)
..++-||.|+.+ +.++++.-...|..||..
T Consensus 101 ~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 101 KAYVECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SCCSSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred HHeeECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 346889988887 333344556677777653
No 185
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=37.27 E-value=15 Score=22.16 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=19.7
Q ss_pred ccccccccccccCCCCcccccccCCCCCCCcceeecCCCCeEEeccCcceeecccccc
Q psy12853 74 HVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLAS 131 (137)
Q Consensus 74 ~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~ 131 (137)
..+|+.|+..-|....-. ...+|.+|+..-.....|.. .=...+||.||+.
T Consensus 5 ~~~C~~Cg~~GH~~~~Cp---~~~rcY~c~~~gh~~~~c~~----p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 5 KVQCTLCKSKKHSKERCP---SIWRAYILVDDNEKAKPKVL----PFHTIYCYNCGGK 55 (83)
T ss_dssp --CCSSSCCSSSCGGGCG---GGTCCCCBC-----------------CCCBCSSSSCB
T ss_pred cCCCCCCCCCCCccccCC---CcccccccccCCcccccccC----CCCCCeecccCCC
Confidence 456777776666553211 12256666654322211211 0133566666654
No 186
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=37.10 E-value=22 Score=20.10 Aligned_cols=26 Identities=19% Similarity=0.530 Sum_probs=18.0
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKH 74 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~ 74 (137)
..++...||.|+.+.. ....|+.||+
T Consensus 26 ~~p~l~~c~~cG~~~~-----pH~vc~~CG~ 51 (60)
T 2zjr_Z 26 TAPNLTECPQCHGKKL-----SHHICPNCGY 51 (60)
T ss_dssp CCCCCEECTTTCCEEC-----TTBCCTTTCB
T ss_pred cCCCceECCCCCCEeC-----CceEcCCCCc
Confidence 5678889999998843 3455666664
No 187
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.82 E-value=18 Score=18.63 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=6.9
Q ss_pred Ceeeccccccccc
Q psy12853 65 AQMLCKRCKHVFC 77 (137)
Q Consensus 65 ~~~~C~~C~~~fC 77 (137)
....|+.|+..|=
T Consensus 28 ~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 28 RPYHCTYCNFSFK 40 (57)
T ss_dssp CCEECSSSSCEES
T ss_pred CCccCCCCCchhc
Confidence 4455655555543
No 188
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=36.80 E-value=15 Score=24.71 Aligned_cols=18 Identities=17% Similarity=0.685 Sum_probs=10.2
Q ss_pred eeecccccccc-ccccccc
Q psy12853 66 QMLCKRCKHVF-CWYCLAS 83 (137)
Q Consensus 66 ~~~C~~C~~~f-C~~C~~~ 83 (137)
.+.+|-|+..| |..|..+
T Consensus 27 ~lr~pCC~k~y~Cr~CHde 45 (143)
T 2dkt_A 27 LLKAPCCDKLYTCRLCHDT 45 (143)
T ss_dssp EEEETTTTEEESSHHHHHH
T ss_pred eEECCCCCCccchhhhhcc
Confidence 45566665433 6666653
No 189
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=36.66 E-value=24 Score=25.43 Aligned_cols=50 Identities=22% Similarity=0.427 Sum_probs=31.7
Q ss_pred CcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCccee
Q psy12853 47 LIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 47 ~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~ie 107 (137)
....|.-|...+.. -..|+.|+..|=..|...|-. ......||.|+....
T Consensus 179 ~i~~C~iC~~iv~~-----g~~C~~C~~~~H~~C~~~~~~------~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQ-----GQSCETCGIRMHLPCVAKYFQ------SNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSS-----CEECSSSCCEECHHHHHHHTT------TCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhC-----CcccCccChHHHHHHHHHHHH------hCCCCCCCCCCCCCC
Confidence 47788888888763 366766666665555544322 123457999887654
No 190
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=36.27 E-value=20 Score=27.85 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=41.0
Q ss_pred cccCCCCCCceeecCCCCeeecc--cccccccccccccccCCC---CcccccccCCCCCCCccee
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLASRDYGG---ATFDSELIKCCPMCSVPIE 107 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~--~C~~~fC~~C~~~~h~~~---~~~~~~~~~~CP~C~~~ie 107 (137)
...|+-|-..+...+..+...|. .|++.|=..|..+|-... ...-+.....||-|+.+|.
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 44677777666544556778886 899999999998885431 1122223457999999875
No 191
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=36.27 E-value=11 Score=29.44 Aligned_cols=31 Identities=26% Similarity=0.692 Sum_probs=18.2
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeeccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASL 132 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~ 132 (137)
...||-|...... +.-..||+.||+.|...|
T Consensus 332 ~~~C~ICle~~~~------pv~lpCGH~FC~~Ci~~w 362 (389)
T 2y1n_A 332 FQLCKICAENDKD------VKIEPCGHLMCTSCLTSW 362 (389)
T ss_dssp SSBCTTTSSSBCC------EEEETTCCEECHHHHHHH
T ss_pred CCCCCccCcCCCC------eEEeCCCChhhHHHHHHH
Confidence 3689999776633 222246666666665544
No 192
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=36.01 E-value=14 Score=19.08 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=6.2
Q ss_pred Ceeecccccccc
Q psy12853 65 AQMLCKRCKHVF 76 (137)
Q Consensus 65 ~~~~C~~C~~~f 76 (137)
..+.|+.|+..|
T Consensus 31 ~~~~C~~C~~~f 42 (57)
T 3uk3_C 31 KPYKCEFCEYAA 42 (57)
T ss_dssp CCEECSSSSCEE
T ss_pred CCcCCCCCcchh
Confidence 345555555544
No 193
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=35.73 E-value=19 Score=20.36 Aligned_cols=26 Identities=19% Similarity=0.535 Sum_probs=17.5
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccc
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKH 74 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~ 74 (137)
..++...||.|+.+... ...|+.||+
T Consensus 26 ~~p~l~~c~~cGe~~~~-----H~vc~~CG~ 51 (60)
T 3v2d_5 26 TPPTLVPCPECKAMKPP-----HTVCPECGY 51 (60)
T ss_dssp CCCCCEECTTTCCEECT-----TSCCTTTCE
T ss_pred cCCceeECCCCCCeecc-----eEEcCCCCc
Confidence 46778999999987643 334666653
No 194
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.55 E-value=29 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=13.7
Q ss_pred cccCCCCCCceeecCCCCeeecccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKH 74 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~ 74 (137)
...|+.|++.+.. .....||.|+.
T Consensus 171 ~~~C~~CG~i~~g---~~p~~CP~C~~ 194 (202)
T 1yuz_A 171 FHLCPICGYIHKG---EDFEKCPICFR 194 (202)
T ss_dssp EEECSSSCCEEES---SCCSBCTTTCC
T ss_pred EEEECCCCCEEcC---cCCCCCCCCCC
Confidence 4557777776542 33356666654
No 195
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=35.33 E-value=6.6 Score=29.55 Aligned_cols=30 Identities=20% Similarity=0.529 Sum_probs=17.0
Q ss_pred ccCCCCCCCcceeecC-CCCeEEeccCccee
Q psy12853 95 LIKCCPMCSVPIEKDE-GCAQMLCKRCKHVF 124 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~-gC~hm~C~~C~~~f 124 (137)
.|.+||+|+..+...+ .=|...|..|++++
T Consensus 23 l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~ 53 (304)
T 2f9y_B 23 VWTKCDSCGQVLYRAELERNLEVCPKCDHHM 53 (304)
T ss_dssp CEECCTTTCCCEETTHHHHTTTBCTTTCCBC
T ss_pred HHHhhhhccchhhHHHHHHHhCCCCCCCCCC
Confidence 3666777777766552 12445555566553
No 196
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=35.07 E-value=25 Score=26.26 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=18.6
Q ss_pred CCCCCCCcceeec--C--CCCeEEeccCcceeecccccccc
Q psy12853 97 KCCPMCSVPIEKD--E--GCAQMLCKRCKHVFCWYCLASLD 133 (137)
Q Consensus 97 ~~CP~C~~~iek~--~--gC~hm~C~~C~~~fC~~C~~~~~ 133 (137)
.+||.|+.+|++. + |= .+.||-.|.+.-+
T Consensus 252 ~pC~~CGt~I~~~~~g~~gR--------sTyfCp~~~~~~~ 284 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGENSR--------MTYFCPHCQKHHH 284 (287)
T ss_dssp SBCTTTCCBCEEECSSTTCC--------CEEECTTTSCC--
T ss_pred CCCCCCCCEEEEEEecCCCC--------CEEECCCcccccc
Confidence 3999999999984 3 42 4555666655433
No 197
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=34.63 E-value=14 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.451 Sum_probs=17.5
Q ss_pred cCCCCCCceeec----------CCCCeeeccccccccccc
Q psy12853 50 CCPMCSVPIEKD----------EGCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 50 ~CP~C~~~i~~~----------~~~~~~~C~~C~~~fC~~ 79 (137)
-|+.|+..+... .+.....|+.|+..|=..
T Consensus 6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~ 45 (60)
T 4gzn_C 6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQ 45 (60)
T ss_dssp ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCH
Confidence 455666655431 245667777777766543
No 198
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=33.98 E-value=29 Score=23.40 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=21.0
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeeccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 130 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~ 130 (137)
...|..|..++....+. ..+|..|++.+|-.|+.
T Consensus 68 ~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEE
T ss_pred CccchhhcCccccccCC-CCcCCCCCchhhccccc
Confidence 44566666665555444 45566677777777773
No 199
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.75 E-value=20 Score=21.34 Aligned_cols=32 Identities=22% Similarity=0.563 Sum_probs=21.2
Q ss_pred cccCCCCCCceeec----------CCCCeeeccccccccccc
Q psy12853 48 IKCCPMCSVPIEKD----------EGCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 48 ~~~CP~C~~~i~~~----------~~~~~~~C~~C~~~fC~~ 79 (137)
...|+.|+..+... .+...+.|+.|+..|=..
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~ 69 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSS 69 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSH
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCH
Confidence 44688888877642 245677888887777543
No 200
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=33.54 E-value=19 Score=27.43 Aligned_cols=29 Identities=28% Similarity=0.645 Sum_probs=19.9
Q ss_pred cccCCCCCC---ceeecCCCCeeecccccccc
Q psy12853 48 IKCCPMCSV---PIEKDEGCAQMLCKRCKHVF 76 (137)
Q Consensus 48 ~~~CP~C~~---~i~~~~~~~~~~C~~C~~~f 76 (137)
...||.|+. -+..+.....+.|..||..+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl 52 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTTCBEE
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCCCCCc
Confidence 457999996 35555566778888877654
No 201
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=33.14 E-value=35 Score=24.89 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=22.8
Q ss_pred ccCCCCCCCcceeecCCCCeEEeccCcce
Q psy12853 95 LIKCCPMCSVPIEKDEGCAQMLCKRCKHV 123 (137)
Q Consensus 95 ~~~~CP~C~~~iek~~gC~hm~C~~C~~~ 123 (137)
..+-||.|+...+...+=..+.|..||..
T Consensus 106 ~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 106 SHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred cCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 46889999999987766667888888764
No 202
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.81 E-value=28 Score=21.13 Aligned_cols=29 Identities=24% Similarity=0.618 Sum_probs=20.1
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
-..||.|+..--|..+-..-.|..|+.-|
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 45799998775555444566788887765
No 203
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=32.72 E-value=6.4 Score=32.95 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=26.4
Q ss_pred cccccccccccccCCCCcccccccCCCCCCCcce
Q psy12853 73 KHVFCWYCLASRDYGGATFDSELIKCCPMCSVPI 106 (137)
Q Consensus 73 ~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~i 106 (137)
...+|-.|..||+.+...--.+.-.-||.|+=.+
T Consensus 66 ~F~mC~~C~~EY~dp~dRRfHAqp~aCp~CGP~l 99 (657)
T 3ttc_A 66 AFPLCPACDKEYRDPLDRRFHAQPVACPECGPYL 99 (657)
T ss_dssp GSCCCHHHHHHHHCTTSTTTTCTTCCCTTTSCCE
T ss_pred CCCCChHHHHHhCCCCCCcCcCCCCcCcccCccc
Confidence 4778889999999886544455567899998777
No 204
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=32.39 E-value=21 Score=22.69 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=5.4
Q ss_pred eecccccccc
Q psy12853 67 MLCKRCKHVF 76 (137)
Q Consensus 67 ~~C~~C~~~f 76 (137)
..|.+||+.|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 4455555555
No 205
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=32.34 E-value=18 Score=15.18 Aligned_cols=11 Identities=18% Similarity=0.425 Sum_probs=6.2
Q ss_pred eeccccccccc
Q psy12853 67 MLCKRCKHVFC 77 (137)
Q Consensus 67 ~~C~~C~~~fC 77 (137)
..|+.|+..|=
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvh_A 4 FSCSLCPQRSR 14 (27)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCcChhhC
Confidence 45666665553
No 206
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.85 E-value=28 Score=19.91 Aligned_cols=30 Identities=23% Similarity=0.579 Sum_probs=21.7
Q ss_pred cccCC--CCCCceeecCCCCeeecccccccccccccc
Q psy12853 48 IKCCP--MCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 48 ~~~CP--~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
...|. +|... +...+.|..|+..||..-+.
T Consensus 12 ~~~Cs~~~Ck~~-----~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQR-----EMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCC-----CSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCC-----CccceECCCCCcccCcccCC
Confidence 34565 47655 23468998999999998875
No 207
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=31.83 E-value=25 Score=18.30 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=7.1
Q ss_pred Ceeeccccccccc
Q psy12853 65 AQMLCKRCKHVFC 77 (137)
Q Consensus 65 ~~~~C~~C~~~fC 77 (137)
....|+.|+..|=
T Consensus 29 ~~~~C~~C~~~f~ 41 (60)
T 2adr_A 29 KPYPCGLCNRAFT 41 (60)
T ss_dssp CSEECTTTCCEES
T ss_pred CCccCCCCCCccC
Confidence 4455666655554
No 208
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=31.56 E-value=9.1 Score=32.59 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCCCcccCCCCCCceeecC----CCCeeeccccc--------------------ccccccccccccCCCCcccccccCCC
Q psy12853 44 DSELIKCCPMCSVPIEKDE----GCAQMLCKRCK--------------------HVFCWYCLASRDYGGATFDSELIKCC 99 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~----~~~~~~C~~C~--------------------~~fC~~C~~~~h~~~~~~~~~~~~~C 99 (137)
..++.--||+|-.-+.-.. .-+.+.|..|| ...|-.|..||+.+...--.+...-|
T Consensus 102 i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC 181 (772)
T 4g9i_A 102 IPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTAC 181 (772)
T ss_dssp CCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCC
T ss_pred cCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCC
Confidence 4566667777766553221 24456677775 55688888888777654445556689
Q ss_pred CCCCcceee
Q psy12853 100 PMCSVPIEK 108 (137)
Q Consensus 100 P~C~~~iek 108 (137)
|.|+-.+..
T Consensus 182 ~~CGP~l~l 190 (772)
T 4g9i_A 182 PVCGPSYRL 190 (772)
T ss_dssp TTTSCCEEE
T ss_pred ccCCceEEE
Confidence 999877654
No 209
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.34 E-value=20 Score=16.12 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=10.5
Q ss_pred CCeeeccccccccccc
Q psy12853 64 CAQMLCKRCKHVFCWY 79 (137)
Q Consensus 64 ~~~~~C~~C~~~fC~~ 79 (137)
...+.|+.|+..|=..
T Consensus 5 ~k~~~C~~C~k~f~~~ 20 (35)
T 2elx_A 5 SSGYVCALCLKKFVSS 20 (35)
T ss_dssp CCSEECSSSCCEESSH
T ss_pred CCCeECCCCcchhCCH
Confidence 4557788887776543
No 210
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.29 E-value=23 Score=16.49 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=12.1
Q ss_pred CCCeeeccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~ 79 (137)
+.....|..|+..|-..
T Consensus 6 ~~k~~~C~~C~k~f~~~ 22 (37)
T 2elm_A 6 SGHLYYCSQCHYSSITK 22 (37)
T ss_dssp SSCEEECSSSSCEEECH
T ss_pred CCcCeECCCCCcccCCH
Confidence 45678888888877543
No 211
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.74 E-value=24 Score=21.22 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=31.3
Q ss_pred cccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCC--CCcc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPM--CSVP 105 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~--C~~~ 105 (137)
...||-|...+. ..|+-+.||+.||..|-..|-.... .......||. |...
T Consensus 7 ~~~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~l~~~~--~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEMK-----KPVKNKVCGHTYEEDAIVRMIESRQ--KRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBCS-----SEEEESSSCCEEEHHHHHHHHHHHH--TTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchhc-----CCEEcCCCCCeecHHHHHHHHHHcc--CcCCCCCCCcCcCccc
Confidence 456887776653 3455446999999999876632210 0012457998 8744
No 212
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.64 E-value=26 Score=19.04 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=12.6
Q ss_pred cccccCCCCCCCcceee
Q psy12853 92 DSELIKCCPMCSVPIEK 108 (137)
Q Consensus 92 ~~~~~~~CP~C~~~iek 108 (137)
...+.+.||+|+.....
T Consensus 8 ~~~~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 8 QDGGRKICPRCNAQFRV 24 (49)
T ss_dssp CCSSCCCCTTTCCCCSS
T ss_pred ccCCceeCCcccccccc
Confidence 33467899999987754
No 213
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.15 E-value=62 Score=18.04 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=5.6
Q ss_pred ccccccccccCC
Q psy12853 76 FCWYCLASRDYG 87 (137)
Q Consensus 76 fC~~C~~~~h~~ 87 (137)
.|+.|...-|..
T Consensus 9 ~C~~Cg~~GH~a 20 (63)
T 2cqf_A 9 RCYNCGGLDHHA 20 (63)
T ss_dssp CCSSSCCSSSCT
T ss_pred cccccCCCCcCh
Confidence 345555444444
No 214
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=29.77 E-value=19 Score=16.58 Aligned_cols=16 Identities=25% Similarity=0.680 Sum_probs=10.3
Q ss_pred CCCeeecccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCW 78 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~ 78 (137)
+.....|+.|+..|=.
T Consensus 8 ~~k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSR 23 (37)
T ss_dssp CSSSBCCTTTCCCBSS
T ss_pred CCCCccCCCCCcccCc
Confidence 4456777777776653
No 215
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.98 E-value=23 Score=16.17 Aligned_cols=16 Identities=13% Similarity=0.202 Sum_probs=10.8
Q ss_pred CCCeeecccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCW 78 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~ 78 (137)
+...+.|+.|+..|=.
T Consensus 6 ~~k~~~C~~C~k~f~~ 21 (36)
T 2elq_A 6 SGKPFKCSLCEYATRS 21 (36)
T ss_dssp CCCSEECSSSSCEESC
T ss_pred CCCCccCCCCCchhCC
Confidence 3456778888777654
No 216
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=28.98 E-value=24 Score=15.87 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=11.6
Q ss_pred CCCeeecccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYC 80 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C 80 (137)
+.....|..|+..|=..-
T Consensus 4 ~~k~~~C~~C~k~f~~~~ 21 (35)
T 1srk_A 4 GKRPFVCRICLSAFTTKA 21 (35)
T ss_dssp CCSCEECSSSCCEESSHH
T ss_pred CCcCeeCCCCCcccCCHH
Confidence 345677888877775443
No 217
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.93 E-value=27 Score=26.30 Aligned_cols=36 Identities=33% Similarity=0.783 Sum_probs=25.8
Q ss_pred cCCCCCCCcc-----ee---ecCCCCeEEeccCccee------ecccccc
Q psy12853 96 IKCCPMCSVP-----IE---KDEGCAQMLCKRCKHVF------CWYCLAS 131 (137)
Q Consensus 96 ~~~CP~C~~~-----ie---k~~gC~hm~C~~C~~~f------C~~C~~~ 131 (137)
...||-|+.. |. +.+|=.++.|..|+++| |-.||..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4579999753 32 24677789999999988 7778775
No 218
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=28.88 E-value=40 Score=20.22 Aligned_cols=27 Identities=26% Similarity=0.720 Sum_probs=16.1
Q ss_pred CCCCCCcceeec---------CCCCeEEeccCccee
Q psy12853 98 CCPMCSVPIEKD---------EGCAQMLCKRCKHVF 124 (137)
Q Consensus 98 ~CP~C~~~iek~---------~gC~hm~C~~C~~~f 124 (137)
.|-.|+-.|.|. .++..++|..|+..|
T Consensus 12 ~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F 47 (79)
T 1wjv_A 12 TCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDF 47 (79)
T ss_dssp EESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEE
T ss_pred EcCCCCCeeecccchhHHhhCCCCCcEEecccCCee
Confidence 355666666552 355666776666666
No 219
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=28.56 E-value=22 Score=14.94 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=6.5
Q ss_pred eeccccccccc
Q psy12853 67 MLCKRCKHVFC 77 (137)
Q Consensus 67 ~~C~~C~~~fC 77 (137)
..|+.|+..|=
T Consensus 4 ~~C~~C~k~f~ 14 (28)
T 2kvf_A 4 YSCSVCGKRFS 14 (28)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCcccC
Confidence 45666666554
No 220
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.18 E-value=22 Score=15.01 Aligned_cols=12 Identities=25% Similarity=0.714 Sum_probs=6.9
Q ss_pred eecccccccccc
Q psy12853 67 MLCKRCKHVFCW 78 (137)
Q Consensus 67 ~~C~~C~~~fC~ 78 (137)
..|+.|+..|-.
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 456666665543
No 221
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=28.16 E-value=29 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=18.1
Q ss_pred cccCCCCCCceeecCCCCeeeccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHV 75 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~ 75 (137)
..-||.|+.-+.. .+.....|++|+..
T Consensus 42 Y~ACp~CnKKV~~-~~~g~~~CekC~~~ 68 (172)
T 3u50_C 42 YYRCTCQGKSVLK-YHGDSFFCESCQQF 68 (172)
T ss_dssp EEECTTSCCCEEE-ETTTEEEETTTTEE
T ss_pred ehhchhhCCEeee-CCCCeEECCCCCCC
Confidence 4568899888763 34456777777654
No 222
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=28.00 E-value=46 Score=19.05 Aligned_cols=57 Identities=28% Similarity=0.683 Sum_probs=35.3
Q ss_pred CCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceeec
Q psy12853 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109 (137)
Q Consensus 46 ~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek~ 109 (137)
.+..+|+-|+.+- ++...+.|-.|...|=..|........ .. ..-.||.|...+.|.
T Consensus 16 ~~~~~C~~C~~~~---~~~~mi~CD~C~~wfH~~Cv~~~~~~~---~~-~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 16 NQIWICPGCNKPD---DGSPMIGCDDCDDWYHWPCVGIMAAPP---EE-MQWFCPKCANKIKKD 72 (75)
T ss_dssp CEEECBTTTTBCC---SSCCEEECSSSSSEEEHHHHTCSSCCC---SS-SCCCCTTTHHHHCSC
T ss_pred CCCcCCCCCCCCC---CCCCEEEcCCCCcccccccCCCCccCC---CC-CCEEChhccCchhhc
Confidence 4467899898763 355788888887666666654322111 11 223699998776653
No 223
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.95 E-value=26 Score=16.10 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=10.6
Q ss_pred CCCeeecccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCW 78 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~ 78 (137)
+...+.|+.|+..|=.
T Consensus 6 ~~k~~~C~~C~k~f~~ 21 (37)
T 2elp_A 6 SGRAMKCPYCDFYFMK 21 (37)
T ss_dssp CCCCEECSSSSCEECS
T ss_pred CCCCeECCCCChhhcc
Confidence 3456778888777643
No 224
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.85 E-value=44 Score=20.93 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=15.8
Q ss_pred CCCcceeecCCCCeEEec-cCccee
Q psy12853 101 MCSVPIEKDEGCAQMLCK-RCKHVF 124 (137)
Q Consensus 101 ~C~~~iek~~gC~hm~C~-~C~~~f 124 (137)
+|...+|-...|.-|+|. .||..|
T Consensus 24 ~C~~~~~~~~~C~~i~CP~~Cga~i 48 (100)
T 2yre_A 24 RCMTRPEPGISCDLIGCPLVCGAVF 48 (100)
T ss_dssp TCCCCCCTTTCCCEEECTTCCSCEE
T ss_pred ccCCCCCCCCeeeeeeCCcccCCee
Confidence 566666666677777776 566644
No 225
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.67 E-value=25 Score=15.92 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=10.6
Q ss_pred CCCeeecccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCW 78 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~ 78 (137)
+.....|+.|+..|=.
T Consensus 6 ~~k~~~C~~C~k~f~~ 21 (36)
T 2elt_A 6 SGKPYKCPQCSYASAI 21 (36)
T ss_dssp CCCSEECSSSSCEESS
T ss_pred CCCCCCCCCCCcccCC
Confidence 3456778888777654
No 226
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.40 E-value=26 Score=15.95 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=10.8
Q ss_pred CCeeeccccccccccc
Q psy12853 64 CAQMLCKRCKHVFCWY 79 (137)
Q Consensus 64 ~~~~~C~~C~~~fC~~ 79 (137)
.....|+.|+..|-..
T Consensus 7 ~k~~~C~~C~k~f~~~ 22 (36)
T 2els_A 7 GKIFTCEYCNKVFKFK 22 (36)
T ss_dssp CCCEECTTTCCEESSH
T ss_pred CCCEECCCCCceeCCH
Confidence 4567788888777543
No 227
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=27.34 E-value=20 Score=17.69 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=14.4
Q ss_pred CCCeeeccccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLAS 83 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~~ 83 (137)
+...+.|+.|+..|=..-...
T Consensus 5 gekp~~C~~CgK~F~~~s~L~ 25 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSPSTLE 25 (36)
T ss_dssp SCCCCEETTTTEECSCHHHHH
T ss_pred CccCeECCCCCCccCCHhHcc
Confidence 456788888888886554443
No 228
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=27.33 E-value=37 Score=20.98 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=19.7
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
-..||.|+..--|..+-..-.|..|+.-|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp CBCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred cccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 45799998765555454556777777765
No 229
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.27 E-value=25 Score=14.83 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=7.5
Q ss_pred eeecccccccccc
Q psy12853 66 QMLCKRCKHVFCW 78 (137)
Q Consensus 66 ~~~C~~C~~~fC~ 78 (137)
...|..|+..|=.
T Consensus 3 ~~~C~~C~~~f~~ 15 (30)
T 2m0d_A 3 PYQCDYCGRSFSD 15 (30)
T ss_dssp CEECTTTCCEESC
T ss_pred CccCCCCCcccCC
Confidence 3556666666543
No 230
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=27.09 E-value=19 Score=15.28 Aligned_cols=11 Identities=18% Similarity=0.380 Sum_probs=6.3
Q ss_pred eeccccccccc
Q psy12853 67 MLCKRCKHVFC 77 (137)
Q Consensus 67 ~~C~~C~~~fC 77 (137)
..|+.|+..|=
T Consensus 4 ~~C~~C~k~f~ 14 (27)
T 2kvg_A 4 YRCPLCRAGCP 14 (27)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 45666665553
No 231
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.92 E-value=13 Score=15.52 Aligned_cols=11 Identities=36% Similarity=1.059 Sum_probs=5.6
Q ss_pred eeccccccccc
Q psy12853 67 MLCKRCKHVFC 77 (137)
Q Consensus 67 ~~C~~C~~~fC 77 (137)
..|+.|+..|=
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 34555555554
No 232
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=26.85 E-value=20 Score=15.10 Aligned_cols=10 Identities=30% Similarity=1.112 Sum_probs=5.0
Q ss_pred eecccccccc
Q psy12853 67 MLCKRCKHVF 76 (137)
Q Consensus 67 ~~C~~C~~~f 76 (137)
..|+.|+..|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 3455555544
No 233
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=25.92 E-value=29 Score=19.71 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=13.7
Q ss_pred cccCCCCCCceeecCCCCeeeccccccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFC 77 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC 77 (137)
.+.||.|+.... .-+||.||...-
T Consensus 5 mr~C~~Cg~YTL------k~~CP~CG~~t~ 28 (60)
T 2aus_D 5 IRKCPKCGRYTL------KETCPVCGEKTK 28 (60)
T ss_dssp CEECTTTCCEES------SSBCTTTCSBCE
T ss_pred ceECCCCCCEEc------cccCcCCCCccC
Confidence 567777766543 223666665543
No 234
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.90 E-value=29 Score=15.73 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=11.2
Q ss_pred CCCeeeccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~ 79 (137)
+.....|+.|+..|=..
T Consensus 6 ~~k~~~C~~C~k~f~~~ 22 (36)
T 2elv_A 6 SGLLYDCHICERKFKNE 22 (36)
T ss_dssp CCCCEECSSSCCEESSH
T ss_pred CCCCeECCCCCCccCCH
Confidence 34567788888776543
No 235
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=25.78 E-value=34 Score=20.79 Aligned_cols=30 Identities=20% Similarity=0.500 Sum_probs=22.6
Q ss_pred cccCC--CCCCceeecCCCCeeecccccccccccccc
Q psy12853 48 IKCCP--MCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 48 ~~~CP--~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
...|. +|.... ...+.|..|+..||..-+.
T Consensus 25 ~~~C~~~~Ck~~~-----~l~f~C~~C~~~FC~~HR~ 56 (86)
T 1wfe_A 25 SYSCSFKGCTDVE-----LVAVICPYCEKNFCLRHRH 56 (86)
T ss_dssp CEECCSTTCCCEE-----SSCEECTTTCCEECGGGCS
T ss_pred CCCCCCcCCCCCC-----ccceECCCCCcccccccCC
Confidence 44575 587762 2568999999999998876
No 236
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=25.76 E-value=41 Score=23.20 Aligned_cols=52 Identities=6% Similarity=0.023 Sum_probs=34.5
Q ss_pred CCCCcccCCCCCCceeecCCCCeeecccccccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
..+....||-|...+. ..|.= .||+.||..|-..|-.. +...||.|+.++..
T Consensus 102 ~ip~~f~CPI~~elm~-----DPV~~-~~Ghtfer~~I~~~l~~-------~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 102 EIPDYLCGKISFELMR-----EPCIT-PSGITYDRKDIEEHLQR-------VGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCCGGGBCTTTCSBCS-----SEEEC-TTSCEEEHHHHHHHHHH-------TCSBCTTTCCBCCG
T ss_pred CCcHhhcccCccccCC-----CCeEC-CCCCEECHHHHHHHHHh-------CCCCCCCCcCCCCh
Confidence 4466778888877764 22222 48999999998765422 11259999987753
No 237
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=25.69 E-value=66 Score=15.68 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.2
Q ss_pred ccccccccccCC
Q psy12853 76 FCWYCLASRDYG 87 (137)
Q Consensus 76 fC~~C~~~~h~~ 87 (137)
.|+.|+..-|..
T Consensus 2 ~C~~Cg~~GH~~ 13 (37)
T 2bl6_A 2 TCYNCGKPGHLS 13 (37)
T ss_dssp CBSSSCCSSCCT
T ss_pred cccccCCCCcch
Confidence 355665554443
No 238
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.58 E-value=24 Score=19.34 Aligned_cols=11 Identities=18% Similarity=0.404 Sum_probs=7.6
Q ss_pred CcccCCCCCCc
Q psy12853 47 LIKCCPMCSVP 57 (137)
Q Consensus 47 ~~~~CP~C~~~ 57 (137)
+...||.|+..
T Consensus 13 ~k~iCpkC~a~ 23 (51)
T 3j21_g 13 KKYVCLRCGAT 23 (51)
T ss_dssp SEEECTTTCCE
T ss_pred CCccCCCCCCc
Confidence 35668888776
No 239
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.94 E-value=26 Score=19.22 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=7.2
Q ss_pred CCeeeccccccccc
Q psy12853 64 CAQMLCKRCKHVFC 77 (137)
Q Consensus 64 ~~~~~C~~C~~~fC 77 (137)
...+.|+.|+..|=
T Consensus 40 ~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 40 EKPYKCLECGKAFS 53 (72)
T ss_dssp SCCEECSSSCCEES
T ss_pred CCCeECCCCCcccC
Confidence 34455655555543
No 240
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=24.90 E-value=29 Score=21.66 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=11.1
Q ss_pred CCCCCCCcceeecCCCCeEEeccCcc
Q psy12853 97 KCCPMCSVPIEKDEGCAQMLCKRCKH 122 (137)
Q Consensus 97 ~~CP~C~~~iek~~gC~hm~C~~C~~ 122 (137)
..||.|+...... +..+|..||+
T Consensus 17 ~lCrRCG~~sfH~---qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGSKAYHL---QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCSSCEET---TSCCBTTTCT
T ss_pred CcCCCCCCccCcC---ccccCcccCC
Confidence 3566665554422 2345555553
No 241
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.70 E-value=24 Score=16.15 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=11.2
Q ss_pred CCCeeeccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~ 79 (137)
+.....|+.|+..|=..
T Consensus 6 ~~k~~~C~~C~k~f~~~ 22 (37)
T 2elo_A 6 SGRSYSCPVCEKSFSED 22 (37)
T ss_dssp CCCCCEETTTTEECSSH
T ss_pred CCCCcCCCCCCCccCCH
Confidence 34567788888777543
No 242
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=24.63 E-value=28 Score=24.13 Aligned_cols=25 Identities=32% Similarity=0.528 Sum_probs=13.8
Q ss_pred cccCCCCCCceeecCCCCeeecccccc
Q psy12853 48 IKCCPMCSVPIEKDEGCAQMLCKRCKH 74 (137)
Q Consensus 48 ~~~CP~C~~~i~~~~~~~~~~C~~C~~ 74 (137)
...|+.|++.+..+ ..+-.||.|+.
T Consensus 155 ~~~C~~CG~~~~g~--~~p~~CP~C~~ 179 (191)
T 1lko_A 155 KWRCRNCGYVHEGT--GAPELCPACAH 179 (191)
T ss_dssp EEEETTTCCEEEEE--ECCSBCTTTCC
T ss_pred eEEECCCCCEeeCC--CCCCCCCCCcC
Confidence 44588888776532 11126666654
No 243
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.38 E-value=40 Score=16.41 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=9.4
Q ss_pred CCCeeecccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCW 78 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~ 78 (137)
+...+.|+.|+..|=.
T Consensus 9 ~~k~~~C~~C~k~f~~ 24 (46)
T 2em8_A 9 GEKPYKCVECGKGYKR 24 (46)
T ss_dssp SCCSEECSSSCCEESS
T ss_pred CCCCeECcccCchhCC
Confidence 3455666666666543
No 244
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.20 E-value=28 Score=14.49 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=5.9
Q ss_pred eeccccccccc
Q psy12853 67 MLCKRCKHVFC 77 (137)
Q Consensus 67 ~~C~~C~~~fC 77 (137)
..|+.|+..|-
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 45556655553
No 245
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=24.13 E-value=95 Score=18.77 Aligned_cols=50 Identities=10% Similarity=-0.033 Sum_probs=34.1
Q ss_pred CCCcccCCCCCCceeecCCCCeeeccccc-ccccccccccccCCCCcccccccCCCCCCCcceee
Q psy12853 45 SELIKCCPMCSVPIEKDEGCAQMLCKRCK-HVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108 (137)
Q Consensus 45 ~~~~~~CP~C~~~i~~~~~~~~~~C~~C~-~~fC~~C~~~~h~~~~~~~~~~~~~CP~C~~~iek 108 (137)
.+....||-|...+. ..|+= .|| +.||..|-..|-.. ...||.|+..+..
T Consensus 19 ~p~~~~CpI~~~~m~-----dPV~~-~cG~htf~r~cI~~~l~~--------~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMC-----DPVVL-PSSRVTVDRSTIARHLLS--------DQTDPFNRSPLTM 69 (98)
T ss_dssp CCTTTBCTTTCSBCS-----SEEEC-TTTCCEEEHHHHHHHTTT--------SCBCTTTCSBCCT
T ss_pred CcHhcCCcCcccccc-----CCeEC-CCCCeEECHHHHHHHHHh--------CCCCCCCCCCCCh
Confidence 355668888877663 22222 478 99999998876442 2479999988753
No 246
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=24.08 E-value=41 Score=20.75 Aligned_cols=29 Identities=21% Similarity=0.427 Sum_probs=18.8
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
-..||.|+..--|..+-..-.|..|+.-|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred CCcCCCCCCceeeecccceEEcCCCCCEE
Confidence 45799997665554444455777777665
No 247
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=23.94 E-value=38 Score=22.38 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=7.9
Q ss_pred cCCCCCCCcceee
Q psy12853 96 IKCCPMCSVPIEK 108 (137)
Q Consensus 96 ~~~CP~C~~~iek 108 (137)
...|+.|...|.-
T Consensus 133 ~v~C~sCSl~~~v 145 (155)
T 2l6l_A 133 LISCDTCSLIIEL 145 (155)
T ss_dssp EEECSSSSCEEEE
T ss_pred EEECCCCceEEEE
Confidence 4566666666644
No 248
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=23.76 E-value=21 Score=19.08 Aligned_cols=9 Identities=22% Similarity=0.807 Sum_probs=4.2
Q ss_pred cCCCCCCce
Q psy12853 50 CCPMCSVPI 58 (137)
Q Consensus 50 ~CP~C~~~i 58 (137)
.|+.|++.+
T Consensus 6 ~C~vCGyvy 14 (46)
T 6rxn_A 6 VCNVCGYEY 14 (46)
T ss_dssp EETTTCCEE
T ss_pred ECCCCCeEE
Confidence 345555444
No 249
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=23.61 E-value=31 Score=16.32 Aligned_cols=19 Identities=21% Similarity=0.351 Sum_probs=12.9
Q ss_pred CCCeeeccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCL 81 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~ 81 (137)
+...+.|+.|+..|=..-.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~ 25 (42)
T 2el5_A 7 GENPYECSECGKAFNRKDQ 25 (42)
T ss_dssp SCCSEECSSSCCEESSHHH
T ss_pred CCCCccCCCcChhhCCHHH
Confidence 4566888888887765443
No 250
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.37 E-value=24 Score=14.68 Aligned_cols=10 Identities=30% Similarity=0.850 Sum_probs=5.5
Q ss_pred eccccccccc
Q psy12853 68 LCKRCKHVFC 77 (137)
Q Consensus 68 ~C~~C~~~fC 77 (137)
.|+.|+..|-
T Consensus 4 ~C~~C~~~f~ 13 (29)
T 2m0e_A 4 KCPHCDKKFN 13 (29)
T ss_dssp CCSSCCCCCC
T ss_pred cCCCCCcccC
Confidence 4555655554
No 251
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.35 E-value=41 Score=16.31 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=12.0
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L 28 (46)
T 2em7_A 9 GEKPYKCEECGKGFICRRDL 28 (46)
T ss_dssp CCCSEECSSSCCEESCHHHH
T ss_pred CCcCccCCCccchhCCHHHH
Confidence 44567777777766554433
No 252
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.31 E-value=35 Score=16.09 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=12.8
Q ss_pred CCCeeeccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCL 81 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~ 81 (137)
+...+.|+.|+..|=..-.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~ 25 (41)
T 2ept_A 7 GQRVYECQECGKSFRQKGS 25 (41)
T ss_dssp CCCCEECSSSCCEESSHHH
T ss_pred CCCCeECCCCCCCcCCHHH
Confidence 4566788888887764433
No 253
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=23.26 E-value=42 Score=16.30 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=12.1
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L 28 (46)
T 2el6_A 9 GVNPYKCSQCEKSFSGKLRL 28 (46)
T ss_dssp CCCSEECSSSSCEESSHHHH
T ss_pred CCCCeECCCCCcccCCHHHH
Confidence 44567777777776654433
No 254
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=23.18 E-value=46 Score=20.97 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=19.7
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCccee
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~f 124 (137)
-..||.|+..--|..+-..-.|..|+.-|
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred CCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 45799997766555554556777777765
No 255
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=23.01 E-value=51 Score=22.82 Aligned_cols=57 Identities=19% Similarity=0.440 Sum_probs=34.3
Q ss_pred ccCCCCCCceeecC-CCCeeecccccccccccccccccCCCCccc---ccccCCCCCCCcc
Q psy12853 49 KCCPMCSVPIEKDE-GCAQMLCKRCKHVFCWYCLASRDYGGATFD---SELIKCCPMCSVP 105 (137)
Q Consensus 49 ~~CP~C~~~i~~~~-~~~~~~C~~C~~~fC~~C~~~~h~~~~~~~---~~~~~~CP~C~~~ 105 (137)
.+||-|+.++..++ +...++|-.|...|=..|-........... ....-.||.|...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 47999998876544 457899999987776666532110000000 1124579999754
No 256
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=22.97 E-value=35 Score=16.08 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=12.0
Q ss_pred CCCeeeccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~ 79 (137)
+.....|+.|+..|=..
T Consensus 8 ~~~~~~C~~C~k~f~~~ 24 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQR 24 (42)
T ss_dssp SSCCEECSSSCCEESSH
T ss_pred CCCCeECCCCCcccCCH
Confidence 45667888888877543
No 257
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=22.79 E-value=45 Score=18.94 Aligned_cols=37 Identities=22% Similarity=0.606 Sum_probs=26.0
Q ss_pred cCCCCCCCcceeecCCCCeEEeccCcceeeccccccccc
Q psy12853 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDV 134 (137)
Q Consensus 96 ~~~CP~C~~~iek~~gC~hm~C~~C~~~fC~~C~~~~~~ 134 (137)
.-.|+.|...= -.+|+-|.-- -|...||-.||..+.-
T Consensus 9 ~~~C~iC~KTK-FADG~Gh~C~-yCk~r~CaRCGg~v~l 45 (62)
T 2a20_A 9 APTCGICHKTK-FADGCGHNCS-YCQTKFCARCGGRVSL 45 (62)
T ss_dssp CCCCSSSSCSC-CCSSCCEEBT-TTCCEECTTSEEEEES
T ss_pred cchhhhhccce-eccCCCcccc-ccCCeeecccCCEeee
Confidence 44677776532 3678888644 4999999999987653
No 258
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.75 E-value=36 Score=20.39 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=10.5
Q ss_pred CCCCcccCCCCCCce
Q psy12853 44 DSELIKCCPMCSVPI 58 (137)
Q Consensus 44 ~~~~~~~CP~C~~~i 58 (137)
.+....+||.|+..-
T Consensus 26 ~~~~k~FCp~CGn~T 40 (79)
T 2con_A 26 SDMNRVFCGHCGNKT 40 (79)
T ss_dssp SCSSCCSCSSSCCSC
T ss_pred CCcccccccccCccc
Confidence 445677888888753
No 259
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.64 E-value=43 Score=16.20 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.0
Q ss_pred CCCeeeccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~ 79 (137)
+...+.|+.|+..|=..
T Consensus 9 ~~k~~~C~~C~k~f~~~ 25 (46)
T 2enc_A 9 GEKPFKCEECGKGFYTN 25 (46)
T ss_dssp CCCSEECSSSCCEESSH
T ss_pred CCCCcCCCCCCCcCCCh
Confidence 34556677666666543
No 260
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.57 E-value=29 Score=16.44 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=13.3
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+.....|+.|+..|=..-..
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L 27 (42)
T 2ytb_A 8 GEKPYRCDQCGKAFSQKGSL 27 (42)
T ss_dssp SCCSBCCTTTTCCBSSHHHH
T ss_pred CCCCeeCCCccchhCCHHHH
Confidence 45567788888877654443
No 261
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=22.52 E-value=73 Score=18.52 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=5.9
Q ss_pred ccccccccccCC
Q psy12853 76 FCWYCLASRDYG 87 (137)
Q Consensus 76 fC~~C~~~~h~~ 87 (137)
.|+.|+..-|..
T Consensus 26 ~C~~Cg~~GH~a 37 (74)
T 2li8_A 26 RCYNCGGLDHHA 37 (74)
T ss_dssp CCTTTCCSSSCT
T ss_pred cccccCCcCcCc
Confidence 455555544444
No 262
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=22.36 E-value=26 Score=14.92 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=5.9
Q ss_pred eeccccccccc
Q psy12853 67 MLCKRCKHVFC 77 (137)
Q Consensus 67 ~~C~~C~~~fC 77 (137)
..|+.|+..|=
T Consensus 3 ~~C~~C~k~f~ 13 (30)
T 1paa_A 3 YACGLCNRAFT 13 (30)
T ss_dssp SBCTTTCCBCS
T ss_pred cCCcccCcccC
Confidence 34555655554
No 263
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=22.27 E-value=57 Score=19.27 Aligned_cols=29 Identities=21% Similarity=0.660 Sum_probs=21.1
Q ss_pred ccCC--CCCCceeecCCCCeeecccccccccccccc
Q psy12853 49 KCCP--MCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 49 ~~CP--~C~~~i~~~~~~~~~~C~~C~~~fC~~C~~ 82 (137)
..|. +|+.. +-..+.|..|+..||..-+.
T Consensus 15 ~~Cs~~~C~~~-----dflpf~C~~C~~~FC~~HR~ 45 (75)
T 1wys_A 15 QHCQVQHCRQR-----DFLPFVCDGCSGIFCLEHRS 45 (75)
T ss_dssp CCCSCTTTCCC-----SCCCEECTTTCCEECSTTCS
T ss_pred CCcCcccCCCc-----cceeeECcccCcCcCcccCC
Confidence 4553 46655 34579999999999988775
No 264
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=21.93 E-value=28 Score=14.35 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=5.1
Q ss_pred eccccccccc
Q psy12853 68 LCKRCKHVFC 77 (137)
Q Consensus 68 ~C~~C~~~fC 77 (137)
.|+.|+..|=
T Consensus 3 ~C~~C~k~f~ 12 (27)
T 1znf_A 3 KCGLCERSFV 12 (27)
T ss_dssp BCSSSCCBCS
T ss_pred cCCCCCCcCC
Confidence 4555555543
No 265
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.92 E-value=35 Score=16.12 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=13.0
Q ss_pred CCCeeeccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCL 81 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~ 81 (137)
+.....|+.|+..|=..-.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~ 26 (42)
T 2en2_A 8 GEKPYKCETCGARFVQVAH 26 (42)
T ss_dssp SSCSEECTTTCCEESSHHH
T ss_pred CCCCEeCCCcChhhCCHHH
Confidence 4566888888887765443
No 266
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.82 E-value=32 Score=15.48 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=9.1
Q ss_pred CCeeecccccccccc
Q psy12853 64 CAQMLCKRCKHVFCW 78 (137)
Q Consensus 64 ~~~~~C~~C~~~fC~ 78 (137)
.....|+.|+..|=.
T Consensus 7 ~~~~~C~~C~k~f~~ 21 (36)
T 2elr_A 7 GKTHLCDMCGKKFKS 21 (36)
T ss_dssp CSSCBCTTTCCBCSS
T ss_pred CCCeecCcCCCCcCc
Confidence 345667777766643
No 267
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.78 E-value=37 Score=15.77 Aligned_cols=16 Identities=25% Similarity=0.336 Sum_probs=10.4
Q ss_pred CCeeeccccccccccc
Q psy12853 64 CAQMLCKRCKHVFCWY 79 (137)
Q Consensus 64 ~~~~~C~~C~~~fC~~ 79 (137)
.....|..|+..|=..
T Consensus 4 ~k~~~C~~C~k~f~~~ 19 (39)
T 1njq_A 4 PRSYTCSFCKREFRSA 19 (39)
T ss_dssp SSSEECTTTCCEESSH
T ss_pred CCceECCCCCcccCCH
Confidence 3456787787776543
No 268
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.62 E-value=37 Score=16.28 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=13.1
Q ss_pred CCCeeeccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCL 81 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~ 81 (137)
+...+.|+.|+..|=..-.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~ 27 (44)
T 2yu5_A 9 GENPFKCSKCDRVFTQRNY 27 (44)
T ss_dssp CCCSEECSSSSCEESSSHH
T ss_pred CCCCeECCCCCchhCCHHH
Confidence 4566888888887765443
No 269
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=21.59 E-value=80 Score=21.64 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=6.7
Q ss_pred eEEeccCccee
Q psy12853 114 QMLCKRCKHVF 124 (137)
Q Consensus 114 hm~C~~C~~~f 124 (137)
..+|..||+.|
T Consensus 165 f~~C~~C~~~w 175 (178)
T 3po3_S 165 FCTCEACGNRW 175 (178)
T ss_dssp CEEETTTCCEE
T ss_pred EEEcCCCCCee
Confidence 45666666665
No 270
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.56 E-value=38 Score=16.38 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=14.3
Q ss_pred CCCCeeecccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+...+.|+.|+..|=..-..
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L 28 (46)
T 2eow_A 8 TGEKPYKCNECGKAFRARSSL 28 (46)
T ss_dssp CCCCCEECTTSCCEESSHHHH
T ss_pred CCCCCeeccccCChhcCHHHH
Confidence 345678898888887655443
No 271
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.31 E-value=37 Score=16.17 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=13.1
Q ss_pred CCCeeeccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCL 81 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~ 81 (137)
+...+.|+.|+..|=..-.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~ 27 (44)
T 2eof_A 9 GEKPYECNECQKAFNTKSN 27 (44)
T ss_dssp CCCSEECTTTCCEESCHHH
T ss_pred CCCCeECCCCCcccCCHhH
Confidence 4566888888887765443
No 272
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.19 E-value=38 Score=16.37 Aligned_cols=20 Identities=30% Similarity=0.850 Sum_probs=14.1
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L 28 (46)
T 2epw_A 9 GEKPCKCTECGKAFCWKSQL 28 (46)
T ss_dssp CCCSEECSSSCCEESSSHHH
T ss_pred CCCCeeCCCCCCccCCHHHH
Confidence 45668898888887755443
No 273
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.13 E-value=38 Score=16.28 Aligned_cols=14 Identities=21% Similarity=0.617 Sum_probs=7.2
Q ss_pred CCeeeccccccccc
Q psy12853 64 CAQMLCKRCKHVFC 77 (137)
Q Consensus 64 ~~~~~C~~C~~~fC 77 (137)
...+.|+.|+..|=
T Consensus 10 ~~~~~C~~C~k~f~ 23 (44)
T 2eou_A 10 KTTSECQECGKIFR 23 (44)
T ss_dssp SCCCCCTTTCCCCS
T ss_pred CcCeECCCCCcccC
Confidence 34455555555554
No 274
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.11 E-value=39 Score=16.38 Aligned_cols=20 Identities=20% Similarity=0.385 Sum_probs=14.0
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L 28 (46)
T 2emi_A 9 GERHYECSECGKAFIQKSTL 28 (46)
T ss_dssp SCCCEECSSSCCEESSHHHH
T ss_pred CCCCCCCCCCCcccCCHHHH
Confidence 45678898888888654443
No 275
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=21.10 E-value=38 Score=17.39 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=8.7
Q ss_pred cCCCCCCCcceee
Q psy12853 96 IKCCPMCSVPIEK 108 (137)
Q Consensus 96 ~~~CP~C~~~iek 108 (137)
...||+|+..|..
T Consensus 9 ~~~C~~C~~~i~~ 21 (39)
T 2i5o_A 9 QVPCEKCGSLVPV 21 (39)
T ss_dssp EEECTTTCCEEEG
T ss_pred CcccccccCcCCc
Confidence 4468888877653
No 276
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.98 E-value=41 Score=16.36 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=14.4
Q ss_pred CCCCeeecccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+...+.|+.|+..|=..-..
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L 28 (46)
T 2eoo_A 8 SGERPYGCNECGKNFGRHSHL 28 (46)
T ss_dssp SCCCCEECSSSCCEESSHHHH
T ss_pred CCCCCEEccccCcccCCHHHH
Confidence 345678898888887655443
No 277
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.90 E-value=35 Score=16.16 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=14.8
Q ss_pred CCCeeeccccccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
+.....|+.|+..|=..-....|
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~~H 30 (42)
T 2eos_A 8 GEKPYPCEICGTRFRHLQTLKSH 30 (42)
T ss_dssp SSCCBCCSSSCCCBSSHHHHHHH
T ss_pred CCCCEECCCCCCccCCHHHHHHH
Confidence 45567888888887655444333
No 278
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=41 Score=16.24 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=15.2
Q ss_pred CCCeeeccccccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
+...+.|+.|+..|=..-....|
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yrj_A 9 GEKPYRCGECGKAFAQKANLTQH 31 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHH
T ss_pred CCCCeECCCCCCccCCHHHHHHH
Confidence 45678898888887655444333
No 279
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.74 E-value=39 Score=16.17 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=13.8
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L 28 (44)
T 2emb_A 9 TRKRYECSKCQATFNLRKHL 28 (44)
T ss_dssp CCSSEECTTTCCEESCHHHH
T ss_pred CCCCeECCCCCCccCCHHHH
Confidence 45668898888887654443
No 280
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.72 E-value=54 Score=15.71 Aligned_cols=17 Identities=29% Similarity=0.819 Sum_probs=10.5
Q ss_pred CCCeeeccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWY 79 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~ 79 (137)
+...+.|+.|+..|=..
T Consensus 9 ~~k~~~C~~C~k~F~~~ 25 (44)
T 2epv_A 9 GEKPYECNECGKAFIWK 25 (44)
T ss_dssp CCCSEECSSSCCEESSH
T ss_pred CCcCeECCCCCcccCch
Confidence 44556777777766543
No 281
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.71 E-value=41 Score=16.31 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=16.0
Q ss_pred CCCCeeeccccccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
.+...+.|+.|+..|=..-....|
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ene_A 8 TGEKPYKCNECGKVFRHNSYLSRH 31 (46)
T ss_dssp CCSSSEECSSSCCEESSHHHHHHH
T ss_pred CCCCCeECCCCCchhCChHHHHHH
Confidence 345678899998888765544333
No 282
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.67 E-value=76 Score=17.15 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=17.1
Q ss_pred cccCCCCCCceeec----------CCCCeeecccccccccc
Q psy12853 48 IKCCPMCSVPIEKD----------EGCAQMLCKRCKHVFCW 78 (137)
Q Consensus 48 ~~~CP~C~~~i~~~----------~~~~~~~C~~C~~~fC~ 78 (137)
...|+.|+..+... .+...+.|+.|+..|=.
T Consensus 17 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 17 PYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp SBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 34566666665431 23455667766666543
No 283
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.54 E-value=41 Score=16.33 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=15.4
Q ss_pred CCCeeeccccccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
+...+.|+.|+..|=..-....|
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H 31 (46)
T 2emf_A 9 GGKHFECTECGKAFTRKSTLSMH 31 (46)
T ss_dssp SSCCEECSSSCCEESCHHHHHHH
T ss_pred CCCCeECCCCCchhCCHHHHHHH
Confidence 45678899898888755444333
No 284
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.53 E-value=40 Score=16.33 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=15.6
Q ss_pred CCCeeeccccccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
+...+.|+.|+..|=..-....|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ep3_A 9 GEKPYRCAECGKAFTDRSNLFTH 31 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHH
T ss_pred CCCCeECCCCCchhCCHHHHHHH
Confidence 45678899898888765544333
No 285
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.52 E-value=39 Score=16.38 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=14.5
Q ss_pred CCCCeeecccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+...+.|+.|+..|=..-..
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L 28 (46)
T 2eml_A 8 TGEKPYECSVCGKAFSHRQSL 28 (46)
T ss_dssp SSCCSEECSSSCCEESSHHHH
T ss_pred CCCCCeeCCCcCCccCCHHHH
Confidence 345678898888887655443
No 286
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.43 E-value=40 Score=16.37 Aligned_cols=20 Identities=20% Similarity=0.401 Sum_probs=13.8
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L 28 (46)
T 2emj_A 9 GEKPFECAECGKSFSISSQL 28 (46)
T ss_dssp CCCSEECSSSSCEESSHHHH
T ss_pred CCCCEECCCCCcccCCHHHH
Confidence 45668898888887654433
No 287
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=20.39 E-value=30 Score=14.48 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=4.3
Q ss_pred ecccccccc
Q psy12853 68 LCKRCKHVF 76 (137)
Q Consensus 68 ~C~~C~~~f 76 (137)
.|+.|+..|
T Consensus 4 ~C~~C~k~f 12 (30)
T 1klr_A 4 QCQYCEFRS 12 (30)
T ss_dssp CCSSSSCCC
T ss_pred cCCCCCCcc
Confidence 444555444
No 288
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=34 Score=16.13 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=11.5
Q ss_pred CCCeeecccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYC 80 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C 80 (137)
+.....|+.|+..|=..-
T Consensus 7 ~~k~~~C~~C~k~f~~~~ 24 (42)
T 2yte_A 7 GEKPYSCAECKETFSDNN 24 (42)
T ss_dssp SCCSCBCTTTCCBCSSHH
T ss_pred CCCCeECCCCCCccCCHH
Confidence 345577888877775443
No 289
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.36 E-value=42 Score=16.08 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=13.4
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L 26 (44)
T 2emx_A 7 GEKPFGCSCCEKAFSSKSYL 26 (44)
T ss_dssp SCCCEECSSSSCEESSHHHH
T ss_pred CCcCccCCCCCcccCCHHHH
Confidence 45668888888877654433
No 290
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.35 E-value=42 Score=16.25 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=14.5
Q ss_pred CCCCeeecccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~ 82 (137)
.+...+.|+.|+..|=..-..
T Consensus 8 ~~~k~~~C~~C~k~F~~~~~L 28 (46)
T 2emy_A 8 TGENPYECHECGKAFSRKYQL 28 (46)
T ss_dssp CSSCCEECSSSCCEESSHHHH
T ss_pred CCCcCcCCCCCCcccCcHHHH
Confidence 345678898888887655443
No 291
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.26 E-value=40 Score=16.29 Aligned_cols=23 Identities=22% Similarity=0.470 Sum_probs=15.5
Q ss_pred CCCeeeccccccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
+...+.|+.|+..|=..-....|
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yts_A 9 GEKPYICNECGKSFIQKSHLNRH 31 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHH
T ss_pred CCcCEECCCCChhhCChHHHHHH
Confidence 45678898888888765544333
No 292
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=44 Score=16.23 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=14.0
Q ss_pred CCCeeecccccccccccccc
Q psy12853 63 GCAQMLCKRCKHVFCWYCLA 82 (137)
Q Consensus 63 ~~~~~~C~~C~~~fC~~C~~ 82 (137)
+...+.|+.|+..|=..-..
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L 28 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFSCSKYL 28 (46)
T ss_dssp CSCCEECSSSCCEESSSHHH
T ss_pred CCCCEECcCCCCcCCCHHHH
Confidence 45678898888887654443
No 293
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.14 E-value=42 Score=16.25 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=15.8
Q ss_pred CCCCeeeccccccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
.+...+.|+.|+..|=..-....|
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2yu8_A 8 TGEKPYKCNECGKVFTQNSHLARH 31 (46)
T ss_dssp CCCSSEECSSSCCEESSSHHHHHH
T ss_pred CCCCCeECCcCCchhCCHHHHHHH
Confidence 345678898888887755444333
No 294
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.13 E-value=53 Score=18.03 Aligned_cols=31 Identities=19% Similarity=0.449 Sum_probs=16.7
Q ss_pred cccCCCCCCceeec----------CCCCeeecccccccccc
Q psy12853 48 IKCCPMCSVPIEKD----------EGCAQMLCKRCKHVFCW 78 (137)
Q Consensus 48 ~~~CP~C~~~i~~~----------~~~~~~~C~~C~~~fC~ 78 (137)
...|+.|+..+... .+...+.|+.|+..|=.
T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 34566666655421 13445667666666543
No 295
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.12 E-value=43 Score=16.27 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=13.5
Q ss_pred CCCCeeeccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCL 81 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~ 81 (137)
.+...+.|+.|+..|=..-.
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~ 27 (46)
T 2em4_A 8 TGQRPYECIECGKAFKTKSS 27 (46)
T ss_dssp CCSSSEECSSSCCEESSHHH
T ss_pred CCCcCcCCCCCCCccCCHHH
Confidence 34566888888887765443
No 296
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=20.11 E-value=43 Score=16.19 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=16.0
Q ss_pred CCCCeeeccccccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
.+...+.|+.|+..|=..-....|
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2ema_A 8 TGEKRYKCNECGKVFSRNSQLSQH 31 (46)
T ss_dssp TTSCCEECSSSCCEESSHHHHHHH
T ss_pred CCCcCcCCCCCcchhCCHHHHHHH
Confidence 345678899998888765544333
No 297
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=20.02 E-value=42 Score=16.21 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=16.3
Q ss_pred CCCCeeeccccccccccccccccc
Q psy12853 62 EGCAQMLCKRCKHVFCWYCLASRD 85 (137)
Q Consensus 62 ~~~~~~~C~~C~~~fC~~C~~~~h 85 (137)
.+...+.|+.|+..|=..-....|
T Consensus 8 ~~~k~~~C~~C~k~f~~~~~L~~H 31 (46)
T 2el4_A 8 TGVKPYGCSQCAKTFSLKSQLIVH 31 (46)
T ss_dssp CCCCSEECSSSSCEESSHHHHHHH
T ss_pred CCCCceECCCCCchhCCHHHHHHH
Confidence 345678899998888765544444
Done!