RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12853
(137 letters)
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 45.5 bits (108), Expect = 8e-08
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 48 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLASRDYGGATF 91
K CP C V IEKD GC M+C+ CK FCW CL + G+ +
Sbjct: 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAW 51
Score = 45.1 bits (107), Expect = 8e-08
Identities = 20/38 (52%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 96 IKCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLAS 131
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 36.3 bits (83), Expect = 0.002
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 13/60 (21%)
Query: 51 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDE 110
C +C+ E + + C H+ C CL S + CP C I+ E
Sbjct: 335 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEG-------QGCPFCRCEIKGTE 381
Score = 30.9 bits (69), Expect = 0.11
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 6/39 (15%)
Query: 99 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASLDVSRS 137
C +C+ E + + C H+ C CL S S
Sbjct: 335 CKICA------ENDKDVKIEPCGHLMCTSCLTSWQESEG 367
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding
domain; 1.90A {Mus musculus}
Length = 101
Score = 33.3 bits (75), Expect = 0.007
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 12/76 (15%)
Query: 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIE 107
+ C C +PI+ CKHVFC+ C + G K CP CS P++
Sbjct: 1 VHFCDKCGLPIK-----VYGRMIPCKHVFCYDCAILHEKKGD-------KMCPGCSDPVQ 48
Query: 108 KDEGCAQMLCKRCKHV 123
+ E C + C V
Sbjct: 49 RIEQCTRGSLFMCSIV 64
Score = 25.2 bits (54), Expect = 5.2
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 128
+ C C +PI+ CKHVFC+ C
Sbjct: 1 VHFCDKCGLPIK-----VYGRMIPCKHVFCYDC 28
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 33.3 bits (75), Expect = 0.015
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 5/61 (8%)
Query: 51 CPMCSVPIEKDEGCAQMLC--KRCKHVFCWYCLAS---RDYGGATFDSELIKCCPMCSVP 105
C +C + C +C CL G TF CP C
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370
Query: 106 I 106
+
Sbjct: 371 L 371
Score = 26.4 bits (57), Expect = 4.1
Identities = 6/33 (18%), Positives = 9/33 (27%), Gaps = 2/33 (6%)
Query: 99 CPMCSVPIEKDEGCAQMLC--KRCKHVFCWYCL 129
C +C + C +C CL
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCL 343
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 29.7 bits (66), Expect = 0.23
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVP 105
+ +K C +C + + + C+ C C+A F S CP C+
Sbjct: 178 DAVKICNICHSLLIQGQ-----SCETCGIRMHLPCVA------KYFQSNAEPRCPHCNDY 226
Query: 106 IEKD 109
+
Sbjct: 227 WPHE 230
Score = 25.5 bits (55), Expect = 6.7
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 94 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 130
+ +K C +C + + + C+ C C+A
Sbjct: 178 DAVKICNICHSLLIQGQ-----SCETCGIRMHLPCVA 209
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 28.8 bits (64), Expect = 0.23
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 51 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 80
C CS + + C +C FC C
Sbjct: 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRC 57
Score = 28.8 bits (64), Expect = 0.23
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 99 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 128
C CS + + C +C FC C
Sbjct: 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRC 57
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 27.9 bits (62), Expect = 0.50
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Query: 67 MLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDE 110
LC C + C+ C+ + +E CP C P++ E
Sbjct: 36 RLCPHCSKLCCFSCI-------RRWLTEQRAQCPHCRAPLQLRE 72
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 27.8 bits (61), Expect = 0.78
Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 18/97 (18%)
Query: 51 CPMCSVPI-EKDEGCAQMLCKRCKHVFCWYCL-----------------ASRDYGGATFD 92
CP+C E + ++ C HVFC CL + Y
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69
Query: 93 SELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 129
S + C E + ++ C HVFC CL
Sbjct: 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 106
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 27.7 bits (61), Expect = 1.0
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 35 RTQVSGATFDSELIKCCPMCSVP---IEKDEGCAQMLCKRCKHV 75
R G + L CP C V I + ++C C V
Sbjct: 10 RAGRRGPNLNIVLT--CPECKVYPPKIVERFSEGDVVCALCGLV 51
Score = 27.7 bits (61), Expect = 1.1
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 92 DSELIKCCPMCSVP---IEKDEGCAQMLCKRCKHV 123
+ ++ CP C V I + ++C C V
Sbjct: 17 NLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLV 51
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 26.3 bits (58), Expect = 1.1
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 72 CKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDE 110
C H FC C+A+ S C C I KD+
Sbjct: 33 CGHRFCESCMAA-------LLSSSSPKCTACQESIVKDK 64
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.4 bits (58), Expect = 1.2
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 11/64 (17%)
Query: 46 ELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVP 105
+ +K C +C C+ C C+A F S CP C+
Sbjct: 13 DAVKICNIC-----HSLLIQGQSCETCGIRMHLPCVAK------YFQSNAEPRCPHCNDY 61
Query: 106 IEKD 109
+
Sbjct: 62 WPHE 65
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 26.3 bits (58), Expect = 1.4
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 87 GGATFDSELIKCCPMCSVPI-EKDEGCAQMLCKRCKHVFCWYCL 129
G CP+C E + ++ C HVFC CL
Sbjct: 1 GTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 44
Score = 25.2 bits (55), Expect = 3.2
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 51 CPMCSVPI-EKDEGCAQMLCKRCKHVFCWYCL 81
CP+C E + ++ C HVFC CL
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 44
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 26.0 bits (57), Expect = 1.6
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 36 TQVSGATFDSELIKCCPMC-SVPIEKDEGCAQMLCKRCKHVFCWYCL 81
+ SG CP+C E + ++ C HVFC CL
Sbjct: 3 SGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 49
Score = 25.6 bits (56), Expect = 2.5
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 83 SRDYGGATFDSELIKCCPMC-SVPIEKDEGCAQMLCKRCKHVFCWYCL 129
S G CP+C E + ++ C HVFC CL
Sbjct: 2 SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 49
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 27.6 bits (60), Expect = 1.8
Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 15/137 (10%)
Query: 1 MTSLVSLDDFLLRHYDKGPC---KNKLGHSRASVIWHRTQVSGATFDSELIK-----CCP 52
M L L + L + +G KN A++ W R S L K C
Sbjct: 98 MVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNHIVLNKDDNEECGD 157
Query: 53 MCSVPIEKDEGCAQMLCKRCKHVFCWYCLA-----SRDYGGATFDSELIKCCPMCSVPIE 107
+C + C + CW +E + C C
Sbjct: 158 ICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCS 217
Query: 108 KDEGCAQMLCKRCKHVF 124
+ + + C C++ +
Sbjct: 218 QPDDPTK--CVACRNFY 232
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all
beta, structural genomics, protein structure
initiative; NMR {Streptomyces coelicolor}
Length = 56
Score = 25.5 bits (57), Expect = 2.0
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 42 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76
++ L I CP C P+E+ + + C +
Sbjct: 2 PLEAGLLEILACPACHAPLEERDAELICTGQDCGLAY 38
Score = 25.5 bits (57), Expect = 2.0
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 90 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124
++ L I CP C P+E+ + + C +
Sbjct: 2 PLEAGLLEILACPACHAPLEERDAELICTGQDCGLAY 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 25.9 bits (57), Expect = 2.0
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 8/38 (21%)
Query: 72 CKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109
CKHVFC+ C+ S L K C +C I +D
Sbjct: 33 CKHVFCYLCVKGA--------SWLGKRCALCRQEIPED 62
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 25.5 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 51 CPMCSVPI-EKDEGCAQMLCKRCKHVFCWYCL 81
CP+C E + ++ C HVFC CL
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 37
Score = 25.5 bits (56), Expect = 2.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 99 CPMCSVPI-EKDEGCAQMLCKRCKHVFCWYCL 129
CP+C E + ++ C HVFC CL
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 37
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 26.2 bits (57), Expect = 2.7
Identities = 15/82 (18%), Positives = 24/82 (29%), Gaps = 3/82 (3%)
Query: 51 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKC--CPMCSVPIEK 108
C + + + C C + CL + +C C CS ++
Sbjct: 11 CLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQ 70
Query: 109 DEGCAQML-CKRCKHVFCWYCL 129
+ ML C C F C
Sbjct: 71 GKNADNMLFCDSCDRGFHMECC 92
>2pd0_A Hypothetical protein; structural genomics, structural genomics
consortium, SGC, UN function; HET: MES; 2.30A
{Cryptosporidium parvum}
Length = 223
Score = 26.3 bits (57), Expect = 3.1
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 2 TSLVSLDDFLLRHYDKGPCKN 22
+ L+ ++ F LR + +G +
Sbjct: 19 SKLLGVNSFALRQFVEGYRGS 39
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 26.5 bits (58), Expect = 3.2
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 69 CKRCKHVFCWYCLASRDYGGATFDSELIKCCPMC 102
C C + C C ++ Y + K C C
Sbjct: 394 CHACGKIVCRNCSRNK-YPLKYLKDRMAKVCDGC 426
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 26.2 bits (58), Expect = 3.5
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 11/52 (21%)
Query: 24 LGHSRASVIWHRTQVSGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHV 75
G ++R+ K C C + + MLC C+
Sbjct: 94 AGRGVQLAEFYRSH-----------KYCGYCGHEMYPSKTEWAMLCSHCRER 134
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 25.1 bits (55), Expect = 3.5
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 8/37 (21%)
Query: 72 CKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEK 108
C H FC+ C+ CP+C VP+E
Sbjct: 24 CLHAFCYVCITRW--------IRQNPTCPLCKVPVES 52
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 25.2 bits (55), Expect = 4.2
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 8/51 (15%)
Query: 71 RCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCK 121
+C+H FC C C +C P A+ L + +
Sbjct: 32 KCRHYFCESCALEH--------FRATPRCYICDQPTGGIFNPAKELMAKLQ 74
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein,
cysteine-rich secretory PROT domain, immune system;
2.20A {Necator americanus}
Length = 424
Score = 26.2 bits (57), Expect = 4.2
Identities = 8/66 (12%), Positives = 14/66 (21%)
Query: 63 GCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKH 122
GCA +C V C Y +++ + + K
Sbjct: 161 GCAYKVCGTKLAVSCIYNGVGYITNQPMWETGQACQTGADCSTYKNSGCEDGLCTKGPDV 220
Query: 123 VFCWYC 128
Sbjct: 221 PETNQQ 226
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics,
PSI-2, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: b.171.1.1
Length = 67
Score = 24.5 bits (54), Expect = 4.6
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 42 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76
+ D +L + CP P+ E ++ +R +
Sbjct: 2 SLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAY 38
Score = 24.5 bits (54), Expect = 4.6
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 90 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124
+ D +L + CP P+ E ++ +R +
Sbjct: 2 SLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAY 38
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 24.3 bits (53), Expect = 7.5
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 72 CKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDE 110
C H FC C+ + +++ CP+C VP
Sbjct: 37 CNHSFCRACI--TLNYESNRNTDGKGNCPVCRVPYPFGN 73
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 24.9 bits (53), Expect = 8.3
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 51 CPMCSVPIEKDEGCAQML-CKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109
CP+C + D+ ++M+ C +C C D + C E+
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64
Query: 110 EGCAQMLCKRCKHVFCWYCLASL 132
++ ++ + L +L
Sbjct: 65 PAEWRLALEKELQISLKQVLTAL 87
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 24.3 bits (52), Expect = 8.7
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 38 VSGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIK 97
+S + E CP+C P+E D+ C + C +C ++
Sbjct: 1 MSRSPDAKEDPVECPLCMEPLEIDDINFFPCT--CGYQICRFCWHR-------IRTDENG 51
Query: 98 CCPMCSVPIEKDE 110
CP C P +D
Sbjct: 52 LCPACRKPYPEDP 64
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 24.8 bits (54), Expect = 9.5
Identities = 11/70 (15%), Positives = 21/70 (30%)
Query: 54 CSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCA 113
C +DE + C RC++ + C+ D + C +
Sbjct: 11 CICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTPLT 70
Query: 114 QMLCKRCKHV 123
+ + K V
Sbjct: 71 EKDYEGLKRV 80
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 24.9 bits (53), Expect = 9.6
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 13/63 (20%)
Query: 50 CCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPM--CSVPIE 107
CP+ P E ++ ++C HVF + + + CP CS +
Sbjct: 183 TCPITCKPYEA-----PLISRKCNHVFDRDGIQN------YLQGYTTRDCPQAACSQVVS 231
Query: 108 KDE 110
+
Sbjct: 232 MRD 234
>2pk7_A Uncharacterized protein; NESG, PLR1, putative
tetraacyldisaccharide-1-P 4-kinase, Q4K structural
genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP:
b.171.1.1
Length = 69
Score = 23.8 bits (52), Expect = 9.8
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 50 CCPMCSVPIEKDEGCAQMLCKRCKHVF 76
CP+C P++ +++ K +
Sbjct: 10 ACPICKGPLKLSADKTELISKGAGLAY 36
Score = 23.8 bits (52), Expect = 9.8
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 98 CCPMCSVPIEKDEGCAQMLCKRCKHVF 124
CP+C P++ +++ K +
Sbjct: 10 ACPICKGPLKLSADKTELISKGAGLAY 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.138 0.495
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,002,361
Number of extensions: 104013
Number of successful extensions: 738
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 245
Length of query: 137
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 53
Effective length of database: 4,356,429
Effective search space: 230890737
Effective search space used: 230890737
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.2 bits)