RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12853
(137 letters)
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 41.9 bits (98), Expect = 8e-07
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 82
C CS + + C +C FC C
Sbjct: 18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 52
Score = 41.9 bits (98), Expect = 8e-07
Identities = 8/35 (22%), Positives = 11/35 (31%)
Query: 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLA 130
C CS + + C +C FC C
Sbjct: 18 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 52
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 40.2 bits (94), Expect = 3e-06
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 49 KCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 82
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 42
Score = 40.2 bits (94), Expect = 3e-06
Identities = 20/36 (55%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 97 KCCPMCSVPIEKDEGCAQMLCK--RCKHVFCWYCLA 130
K CP C V IEKD GC M+C+ CK FCW CL
Sbjct: 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 42
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 59
Score = 26.9 bits (60), Expect = 0.22
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 42 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76
+ D +L + CP P+ E ++ +R +
Sbjct: 2 SLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAY 38
Score = 26.9 bits (60), Expect = 0.22
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 90 TFDSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124
+ D +L + CP P+ E ++ +R +
Sbjct: 2 SLDPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAY 38
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain
{Archaeon Thermoplasma acidophilum, beta chain [TaxId:
2303]}
Length = 107
Score = 26.0 bits (57), Expect = 1.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 87 GGATFDSELIKCCPMCSVPIEKDEGCAQM 115
GGA D++LI V E + +M
Sbjct: 61 GGAIDDTQLINKAVSILVRGETEHVVDEM 89
Score = 24.4 bits (53), Expect = 3.7
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 36 TQVSGATFDSELIKCCPMCSVPIEKDEGCAQM 67
+ GA D++LI V E + +M
Sbjct: 58 KKQGGAIDDTQLINKAVSILVRGETEHVVDEM 89
>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779
{Pseudomonas fluorescens [TaxId: 294]}
Length = 59
Score = 25.0 bits (55), Expect = 1.2
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76
I CP+C P++ +++ K +
Sbjct: 6 ILACPICKGPLKLSADKTELISKGAGLAY 34
Score = 25.0 bits (55), Expect = 1.2
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124
I CP+C P++ +++ K +
Sbjct: 6 ILACPICKGPLKLSADKTELISKGAGLAY 34
>d1sixa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Mycobacterium
tuberculosis, rv2697c [TaxId: 1773]}
Length = 153
Score = 25.9 bits (56), Expect = 1.3
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Query: 50 CCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKD 109
+ + + + + + Y G LI P + + +
Sbjct: 59 AVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRG-EIKVALINLDPAAPIVVHRG 117
Query: 110 EGCAQMLCKRCKHV 123
+ AQ+L +R + V
Sbjct: 118 DRIAQLLVQRVELV 131
Score = 23.6 bits (50), Expect = 7.8
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 42 TFDSELIKCCPMCSVPIEKDEGCAQMLCKRCKHV 75
LI P + + + + AQ+L +R + V
Sbjct: 98 EIKVALINLDPAAPIVVHRGDRIAQLLVQRVELV 131
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345
{Chromobacterium violaceum [TaxId: 536]}
Length = 59
Score = 24.6 bits (54), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 44 DSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 76
D++ I CP+C P+ D+ +++CK + F
Sbjct: 1 DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAF 35
Score = 24.6 bits (54), Expect = 1.7
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 92 DSEL--IKCCPMCSVPIEKDEGCAQMLCKRCKHVF 124
D++ I CP+C P+ D+ +++CK + F
Sbjct: 1 DAKFLEILVCPLCKGPLVFDKSKDELICKGDRLAF 35
>d1euwa_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Escherichia coli [TaxId:
562]}
Length = 136
Score = 25.1 bits (54), Expect = 2.9
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 4/82 (4%)
Query: 46 ELIKCCPMCSVPIEKDEGCAQML-CKRCKHVFCWYCLASRDYGGATFDSELIKCC---PM 101
+ ++ I A ML H + + +L+
Sbjct: 47 DTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQ 106
Query: 102 CSVPIEKDEGCAQMLCKRCKHV 123
S I+ E AQM+
Sbjct: 107 DSFTIQPGERIAQMIFVPVVQA 128
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 23.3 bits (50), Expect = 4.0
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 51 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 81
C +C +E E + C H F C+
Sbjct: 8 CAVCLAELEDGEEARFLPR--CGHGFHAECV 36
Score = 23.3 bits (50), Expect = 4.0
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 99 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCL 129
C +C +E E + C H F C+
Sbjct: 8 CAVCLAELEDGEEARFLPR--CGHGFHAECV 36
>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Feline immunodeficiency
virus [TaxId: 11673]}
Length = 118
Score = 23.7 bits (51), Expect = 5.8
Identities = 12/80 (15%), Positives = 25/80 (31%), Gaps = 2/80 (2%)
Query: 44 DSELIKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCS 103
+ ++I +P K + + Y G +I S
Sbjct: 32 EVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGYRG-EIGVIMINVSR-KS 89
Query: 104 VPIEKDEGCAQMLCKRCKHV 123
+ + + + AQ++ CKH
Sbjct: 90 ITLMERQKIAQLIILPCKHE 109
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 22.8 bits (48), Expect = 7.1
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 8/60 (13%)
Query: 51 CPMCSVPIEKDEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDE 110
CP C ++ M+ C H C C+ CP C P+ K
Sbjct: 6 CPRCKTTKYRNPSLKLMVNV-CGHTLCESCV-------DLLFVRGAGNCPECGTPLRKSN 57
>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine
sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId:
485]}
Length = 144
Score = 23.4 bits (50), Expect = 8.4
Identities = 7/68 (10%), Positives = 15/68 (22%), Gaps = 5/68 (7%)
Query: 61 DEGCAQMLCKRCKHVFCWYCLASRDYGGATFDSELIKCCPMCSVPIEKDEGCAQMLCKRC 120
G + +F G +F + + ++ +
Sbjct: 39 KPGIYVDVVSGEP-LFSSADKYDSGCGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRAA 97
Query: 121 K----HVF 124
HVF
Sbjct: 98 DSHLGHVF 105
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 23.2 bits (49), Expect = 9.9
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 48 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 80
+ C +C + + + C+ CK C C
Sbjct: 48 VNRCILCGEQLGMLGSASVV-CEDCKKNVCTKC 79
Score = 23.2 bits (49), Expect = 9.9
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 96 IKCCPMCSVPIEKDEGCAQMLCKRCKHVFCWYC 128
+ C +C + + + C+ CK C C
Sbjct: 48 VNRCILCGEQLGMLGSASVV-CEDCKKNVCTKC 79
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.138 0.495
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 539,281
Number of extensions: 23902
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 130
Length of query: 137
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 61
Effective length of database: 1,364,116
Effective search space: 83211076
Effective search space used: 83211076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (22.8 bits)