BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12854
(265 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 31/244 (12%)
Query: 22 EPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEWDSVYIINYFLTHFL 81
+P P LL +VE F FG ++ + + ++ SG +VE D V + L +++
Sbjct: 439 KPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSG-THVERDFVEAPSQMLENWV 497
Query: 82 YEERVFAELNSHFATGEKL-KMTDEQLKALRAHNAGIDVCSELFKANLDLQLHN----GP 136
+E+ ++ H+ TG + + E+L R N G+ ++ A +D LH P
Sbjct: 498 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 557
Query: 137 KPHWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFLWSKLVSADIFYA-F 195
++ + +E+ G P +N+P F + G A YY +LWS++ S D+F+ F
Sbjct: 558 AEEYARLCQEI----LGVPATPGTNMPATFGHLAGG-YDAQYYGYLWSEVYSMDMFHTRF 612
Query: 196 KEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSEVFRRFRGRDPCF 255
K++G VG R L GGS +S + RRF GRDP
Sbjct: 613 KQEG-------------------VLNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQ 653
Query: 256 KPFL 259
FL
Sbjct: 654 DAFL 657
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/244 (26%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 22 EPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEWDSVYIINYFLTHFL 81
+P P LL +V F FG ++ + + ++ SG +VE D V + L +++
Sbjct: 439 KPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSG-THVETDFVEAPSQMLENWV 497
Query: 82 YEERVFAELNSHFATGEKL-KMTDEQLKALRAHNAGIDVCSELFKANLDLQLHN----GP 136
+E+ ++ H+ TG + + E+L R N G+ ++ A +D LH P
Sbjct: 498 WEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQALHTQTDADP 557
Query: 137 KPHWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFLWSKLVSADIFYA-F 195
++ + +E+ G P +N+P F + G A YY +LWS++ S D+F+ F
Sbjct: 558 AEEYARLCQEI----LGVPATPGTNMPATFGHLAGG-YDAQYYGYLWSEVYSMDMFHTRF 612
Query: 196 KEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSEVFRRFRGRDPCF 255
K++G VG R L GGS +S + RRF GRDP
Sbjct: 613 KQEG-------------------VLNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQ 653
Query: 256 KPFL 259
FL
Sbjct: 654 DAFL 657
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 112/247 (45%), Gaps = 37/247 (14%)
Query: 22 EPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEWDSVYIINYFLTHFL 81
+P G+P LL +VE F FG ++ + T ++ SG NVE D V + + L +++
Sbjct: 455 QPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDFARFSG-TNVERDFVEVPSQMLENWV 513
Query: 82 YEERVFAELNSHFATGEKLKMTDEQLKAL---RAHNAGIDVCSELFKANLDLQLH-NGPK 137
++ +L+ H+ G + TDE L+ L R N G+ ++ + +D LH N
Sbjct: 514 WDVDSLRKLSKHYKDGHPI--TDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATL 571
Query: 138 PHWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLA----AGYYSFLWSKLVSADIFY 193
SE ++ + G +N+P F G LA YY +LWS++ S D+F+
Sbjct: 572 DAASEYAKYCTEI-LGVAATPGTNMPATF-----GHLAGGYDGQYYGYLWSEVFSMDMFH 625
Query: 194 A-FKEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSEVFRRFRGRD 252
+ FK++G P VG + R+ L GGS ++ + F R+
Sbjct: 626 SCFKKEG-------------------IMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQRE 666
Query: 253 PCFKPFL 259
P K FL
Sbjct: 667 PNQKAFL 673
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 22 EPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEWDSVYIINYFLTHFL 81
+P G+P LL +V F FG ++ + T ++ SG NVE D V + + L +++
Sbjct: 455 QPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSG-TNVETDFVEVPSQMLENWV 513
Query: 82 YEERVFAELNSHFATGEKLKMTDEQLKAL---RAHNAGIDVCSELFKANLDLQLH-NGPK 137
++ +L+ H+ G + TDE L+ L R N G+ ++ + +D LH N
Sbjct: 514 WDVDSLRKLSKHYKDGHPI--TDELLEKLVASRLVNTGLLTLRQIVLSKVDQSLHTNATL 571
Query: 138 PHWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLA----AGYYSFLWSKLVSADIFY 193
SE ++ + G +N+P F G LA YY +LWS++ S D+F+
Sbjct: 572 DAASEYAKYCTEI-LGVAATPGTNMPATF-----GHLAGGYDGQYYGYLWSEVFSMDMFH 625
Query: 194 A-FKEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSEVFRRFRGRD 252
+ FK++G P VG + R+ L GGS ++ + F R+
Sbjct: 626 SCFKKEG-------------------IMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQRE 666
Query: 253 PCFKPFL 259
P K FL
Sbjct: 667 PNQKAFL 673
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 36/255 (14%)
Query: 22 EPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEWDSVYIINYFLTHFL 81
+P G+P LL + V LF FG L Y+ +SG N D V + H+
Sbjct: 450 KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPR-DFVEFPSQINEHWA 508
Query: 82 YEERVFAELNSHFATGEKLKMTDEQLKALRAH---NAGIDVCSELFKANLDLQLHNGPKP 138
+VFA H+ +G M DE + +R N G ++ L A LD++ H +
Sbjct: 509 THPQVFARYARHYQSGAA--MPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE- 565
Query: 139 HWSEISRELYPLHFGFPIDKYSNLPC--------RFVEVGSGDLAAGYYSFLWSKLVSAD 190
+E +++ + + +LP F + G AAGYY++LW+++++ D
Sbjct: 566 --NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD 623
Query: 191 IFYAFKEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSEVFRRFRG 250
+ F E G E+ G R R+ L+ G S ++R++RG
Sbjct: 624 GYQWFVEQGGLTREN-------------------GLRFREAILSRGNSEDLERLYRQWRG 664
Query: 251 RDPCFKPFLDMFRLN 265
+ P P L LN
Sbjct: 665 KAPKIMPMLQHRGLN 679
>pdb|2IBP|A Chain A, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
pdb|2IBP|B Chain B, Crystal Structure Of Citrate Synthase From Pyrobaculum
Aerophilum
Length = 409
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 51 LTATHYSDVSGVNNVEWDSVYIINYFLTHFLYEERVFAELNSHFATGEKLKMTDEQLKAL 110
+ +T SD+ G + W Y I YEE + L T +L+ ++K
Sbjct: 31 IKSTSISDIDGEKGILWYRGYRIEELARLSTYEEVSYLILYGRLPTKRELEDYINRMKKY 90
Query: 111 RA-HNAGIDVCSELFKAN 127
R H A ++V L KA+
Sbjct: 91 RELHPATVEVIRNLAKAH 108
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 31 LTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNV-EWD-SVYIINYFLTHFLYEERVFA 88
+T K N F G ++ R+ ++ +N++ + D Y++ Y TH ++ V
Sbjct: 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 89 ELNSHFATGEKLKMTDEQLKA-LRAHNAGIDVCSE 122
+ G+K+++T E+ A L+ G+DV +E
Sbjct: 61 KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 31 LTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNV-EWD-SVYIINYFLTHFLYEERVFA 88
+T K N F G ++ R+ ++ +N++ + D Y++ Y TH ++ V
Sbjct: 1 MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEV 60
Query: 89 ELNSHFATGEKLKMTDEQLKA-LRAHNAGIDVCSE 122
+ G+K+++T E+ A L+ G+DV +E
Sbjct: 61 KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAE 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,015,555
Number of Sequences: 62578
Number of extensions: 347380
Number of successful extensions: 653
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 11
length of query: 265
length of database: 14,973,337
effective HSP length: 97
effective length of query: 168
effective length of database: 8,903,271
effective search space: 1495749528
effective search space used: 1495749528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)