RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12854
(265 letters)
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 146 bits (372), Expect = 2e-40
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 27/256 (10%)
Query: 8 TVITPLNTLILNLTEPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEW 67
+ + ++ N T+P P LL +V F FG ++ + + ++ SG +VE
Sbjct: 425 SRQIAIAAMVANFTKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSGT-HVET 483
Query: 68 DSVYIINYFLTHFLYEERVFAELNSHFATGEKLKMTDE---QLKALRAHNAGIDVCSELF 124
D V + L ++++E+ ++ H+ TG + E +L R N G+ ++
Sbjct: 484 DFVEAPSQMLENWVWEQEPLLRMSRHYRTGS--AVPRELLEKLIESRQANTGLFNLRQIV 541
Query: 125 KANLDLQLHNGPKPHWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFLWS 184
A +D LH +E L G P +N+P F + G A YY +LWS
Sbjct: 542 LAKVDQALHTQTDADPAEEYARLCQEILGVPATPGTNMPATFGHLAGG-YDAQYYGYLWS 600
Query: 185 KLVSADIFYA-FKEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSE 243
++ S D+F+ FK++G + + VG R L GGS +S
Sbjct: 601 EVYSMDMFHTRFKQEG---VLN----------------SKVGMDYRSCILRPGGSEDASA 641
Query: 244 VFRRFRGRDPCFKPFL 259
+ RRF GRDP FL
Sbjct: 642 MLRRFLGRDPKQDAFL 657
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 145 bits (368), Expect = 6e-40
Identities = 65/256 (25%), Positives = 117/256 (45%), Gaps = 27/256 (10%)
Query: 8 TVITPLNTLILNLTEPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEW 67
+ + + L++N ++P G+P LL +VE F FG ++ + T ++ SG NVE
Sbjct: 441 SRMMSVAALVVNFSQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDFARFSGT-NVER 499
Query: 68 DSVYIINYFLTHFLYEERVFAELNSHFATGEKLKMTDE---QLKALRAHNAGIDVCSELF 124
D V + + L +++++ +L+ H+ G +TDE +L A R N G+ ++
Sbjct: 500 DFVEVPSQMLENWVWDVDSLRKLSKHYKDGH--PITDELLEKLVASRLVNTGLLTLRQIV 557
Query: 125 KANLDLQLHNGPKPHWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFLWS 184
+ +D LH + + G +N+P F + G YY +LWS
Sbjct: 558 LSKVDQSLHTNATLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGG-YDGQYYGYLWS 616
Query: 185 KLVSADIFYA-FKEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSE 243
++ S D+F++ FK++G + + P VG + R+ L GGS +
Sbjct: 617 EVFSMDMFHSCFKKEG---IMN----------------PEVGMKYRNLILKPGGSLDGMD 657
Query: 244 VFRRFRGRDPCFKPFL 259
+ + F R+P K FL
Sbjct: 658 MLQNFLQREPNQKAFL 673
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 136 bits (346), Expect = 6e-37
Identities = 64/257 (24%), Positives = 101/257 (39%), Gaps = 30/257 (11%)
Query: 11 TPLNTLILNLTEPQYGKPCLLTFKQVENLFFHFGSLLQRSLTATHYSDVSGVNNVEWDSV 70
P+ + N +P G+P LL + V LF FG L Y+ +SG N D V
Sbjct: 439 HPVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGT-NTPRDFV 497
Query: 71 YIINYFLTHFLYEERVFAELNSHFATGEKLKMTDEQLKALRA---HNAGIDVCSELFKAN 127
+ H+ +VFA H+ +G M DE + +R N G ++ L A
Sbjct: 498 EFPSQINEHWATHPQVFARYARHYQSGA--AMPDELQQKMRNASLFNKGYEMSELLSAAL 555
Query: 128 LDLQLHNGPKPHWSE-----ISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFL 182
LD++ H + + R L + P F + G AAGYY++L
Sbjct: 556 LDMRWHCLEENEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYL 615
Query: 183 WSKLVSADIFYAFKEDGEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSS 242
W+++++ D + F E G G R R+ L+ G S
Sbjct: 616 WTQMLADDGYQWFVEQG---GLT----------------RENGLRFREAILSRGNSEDLE 656
Query: 243 EVFRRFRGRDPCFKPFL 259
++R++RG+ P P L
Sbjct: 657 RLYRQWRGKAPKIMPML 673
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.29
Identities = 33/189 (17%), Positives = 52/189 (27%), Gaps = 54/189 (28%)
Query: 12 PLNTLILNLTEPQYGKPCLLTFKQVENLFFHFGSLLQRS---LTATHYSDVSGVNNVEWD 68
PL + + L Y L L + S +TA ++ W+
Sbjct: 239 PLIGV-IQLA--HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD-----SWE 290
Query: 69 SVYIINYFLTHFLYEERVFAELNSHFATGEKLKMTDEQLKALRAHNAGI----------- 117
S ++ L+ F + + A + L+ +N G+
Sbjct: 291 SFFVSVRKAITVLF----FIGVRCYEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLT 345
Query: 118 --DVCSELFKANLDLQ--------LHNGPKPHWSEISRELYPLHF---GFPIDKYS-NLP 163
V + K N L L NG K + G P Y NL
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEISLVNGAK-------------NLVVSGPPQSLYGLNLT 392
Query: 164 CRFVEVGSG 172
R + SG
Sbjct: 393 LRKAKAPSG 401
Score = 30.8 bits (69), Expect = 0.64
Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 74/203 (36%)
Query: 2 PIFGTKTVITPLNTL-----ILNLTEPQYGKPCLLT-----FKQVENLFFHFGSLLQRSL 51
IF + T +L+ T Q+ +P L F+ +++ G + +
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSAT--QFTQPALTLMEKAAFEDLKS----KGLIPADAT 1758
Query: 52 TATH----YS---DVSGVNNVEWDSVYIINYFLTHFLYEERVFAELNSHFATGEKLKMTD 104
A H Y+ ++ V ++E V ++ Y R ++L ++
Sbjct: 1759 FAGHSLGEYAALASLADVMSIE-SLVEVVFY---------R--GMTMQVAVPRDELGRSN 1806
Query: 105 EQLKALRAHNAGIDVCSELFKANLDLQLHNGPKPHWSEISRELYPLHFGFPIDKYSNLPC 164
+ A+ E + ++ + + G+
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVE------------RVGKRT-----GW---------- 1839
Query: 165 RFVE-----------VGSGDLAA 176
VE V +GDL A
Sbjct: 1840 -LVEIVNYNVENQQYVAAGDLRA 1861
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.61
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 35/137 (25%)
Query: 47 LQRSLTATHYSDVSGVNNVEWDSVYIINYFLTHFLYEERVFAELNSHFATGEKLKMTDE- 105
L RS+ HY+ ++ + Y+ YF +H + H E +
Sbjct: 445 LHRSIV-DHYNIPKTFDSDDLIPPYLDQYFYSHIGH----------HLKNIEHPERMTLF 493
Query: 106 ----------QLKALRAHNAGIDVCSELFKANLDLQLHNG----PKPHWSEISRELYPLH 151
+ K +R + + + L+ + P + + + L
Sbjct: 494 RMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LD 550
Query: 152 FGFPI------DKYSNL 162
F I KY++L
Sbjct: 551 FLPKIEENLICSKYTDL 567
Score = 29.4 bits (65), Expect = 1.3
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 18/96 (18%)
Query: 104 DEQLKALRAHNAGI-DVCSELFKANLDLQ-LHNGPKPHWS-----EISRE------LYPL 150
D + + I V + F N D + + + PK S I L
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 151 HFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFLWSKL 186
F + K + +FVE ++ Y FL S +
Sbjct: 68 -FWTLLSKQEEMVQKFVE----EVLRINYKFLMSPI 98
>1sat_A Serratia protease; parallel beta helix, parallel beta roll,
hydrolase (serine protease); 1.75A {Serratia marcescens}
SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A
Length = 471
Score = 27.6 bits (60), Expect = 5.3
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 156 IDKYSNLPCRFVEVGSGDLA----AGYYSFLWSKLVSADIFYAFKEDGEGRLEDESGRSD 211
+N+ F EV +G A Y YAF + + +D G++
Sbjct: 96 WADVANI--TFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFLPNTIWQGQDLGGQTW 153
Query: 212 SGVSGGERTEPNVGSRLRDTFL 233
V+ P R TF
Sbjct: 154 YNVNQSNVKHPATEDYGRQTFT 175
>1ka2_A M32 carboxypeptidase; hexxh motif, M32 family, metallopeptidase;
2.20A {Pyrococcus furiosus} SCOP: d.92.1.5 PDB: 1k9x_A
1ka4_A
Length = 499
Score = 27.1 bits (59), Expect = 6.1
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 15/122 (12%)
Query: 139 HWSEISRELYPLHFGFPIDKYSNLPCRFVEVGSGDLAAGYYSFLWSKLVSADIFYAFKED 198
W++ L G KYS + + G + + ++ L+SA ++Y K+D
Sbjct: 386 MWNDEMERL----LGIRPRKYSEGILQDIHWAHGSIG-YFPTYTIGTLLSAQLYYHIKKD 440
Query: 199 GEGRLEDESGRSDSGVSGGERTEPNVGSRLRDTFLTFGGSCHSSEVFRRFRGRDPCFKPF 258
+ V+ E + + LR+ +G E+ ++ G D + F
Sbjct: 441 I--------PDFEEKVAKAEFDP--IKAWLREKIHRWGSIYPPKELLKKAIGEDMDAEYF 490
Query: 259 LD 260
+
Sbjct: 491 VR 492
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.433
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,144,792
Number of extensions: 241167
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 12
Length of query: 265
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 173
Effective length of database: 4,133,061
Effective search space: 715019553
Effective search space used: 715019553
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.4 bits)