BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12855
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 55.8 bits (133), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 38/65 (58%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVT 66
DPYVKV L + +R++KKKTHVKK T N V+NE FVF++P R +
Sbjct: 52 DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 111
Query: 67 KNEKI 71
+NE I
Sbjct: 112 RNEVI 116
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK L+ +G+R+ K+KT +KK TLNP YNE+ VF+V
Sbjct: 174 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 212
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVK+YLL R K +T V ++TLNP++NE+F F VP
Sbjct: 42 DPYVKIYLL--PDRKKKFQTKVHRKTLNPIFNETFQFSVP 79
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK L+ +G+R+ K+KT +KK TLNP YNE+ VF+V
Sbjct: 175 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDV 213
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVK+YLL R K +T V ++TLNP++NE+F F VP
Sbjct: 43 DPYVKIYLLP--DRKKKFQTKVHRKTLNPIFNETFQFSVP 80
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYV++YLL +R ++KTHV K+TLNPV+++SF F V
Sbjct: 45 DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSV 83
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA 47
DPYVKV+L+YK +RV KKKT KKR LNP++NESF F++P
Sbjct: 38 DPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPT 78
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 8 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 44
PYVKVYLL G +AKKKT + ++TL+P+Y +S VF+
Sbjct: 54 PYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD 90
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human
Synaptotagmin- Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human
Synaptotagmin- Like Protein 4
Length = 148
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
+PYVK YLL R K+KT +K+ T+NP+Y+E+ +E+P
Sbjct: 46 NPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP 85
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein
Kinase C Gamma
Length = 144
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + + K+KT K TLNPV+NE+FVF +
Sbjct: 42 DPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNL 80
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP
Sbjct: 41 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 78
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP ++
Sbjct: 172 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231
Query: 67 KNEKI 71
KN+ I
Sbjct: 232 KNDAI 236
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP
Sbjct: 64 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 101
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP
Sbjct: 56 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 93
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP
Sbjct: 56 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 93
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain
Of Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In
The Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In
The Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure:
A C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP
Sbjct: 39 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVP 76
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP ++
Sbjct: 47 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 106
Query: 67 KNEKI 71
KN+ I
Sbjct: 107 KNDAI 111
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DP+VK++L + AK KT +KK+TLNP +NE F +++
Sbjct: 59 DPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDI 97
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP ++
Sbjct: 40 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 99
Query: 67 KNEKI 71
KN+ I
Sbjct: 100 KNDAI 104
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 39/65 (60%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAXXXXXXXXXXXXXXXXRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP ++
Sbjct: 39 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 98
Query: 67 KNEKI 71
KN+ I
Sbjct: 99 KNDAI 103
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DP+VK++L + AK KT +KK+TLNP +NE F +++
Sbjct: 59 DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 97
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DP+VK++L + AK KT +KK+TLNP +NE F +++
Sbjct: 37 DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDI 75
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + +K+KT + TLNP +NESF F++
Sbjct: 38 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 76
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + +K+KT + TLNP +NESF F++
Sbjct: 39 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 77
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + +K+KT + TLNP +NESF F++
Sbjct: 40 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKL 78
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 44
+PYVK YLL + +K+KT + ++T NP +NE V+
Sbjct: 41 NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYS 78
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of
Synaptotagmin Vii
Length = 141
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE 44
DP+VK+YLL + K +T VK++ LNP +NE+F+FE
Sbjct: 48 DPFVKIYLL--PDKKHKLETKVKRKNLNPHWNETFLFE 83
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + +K+KT K +LNP +NE+F F++
Sbjct: 194 DPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + +K+KT K +LNP +NE+F F++
Sbjct: 53 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 1 MKDNEL-DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
M N L DPYVK++LL + K +T + T NPV+NE+ +
Sbjct: 44 MDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 87
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 1 MKDNEL-DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
M N L DPYVK++LL + K +T + T NPV+NE+ +
Sbjct: 42 MDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY 85
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP 46
+PYVK+ LL + K+T VK++T PV+ E + FE+P
Sbjct: 55 NPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIP 92
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
+PYVK+Y L K++T K+TL P +N++F++
Sbjct: 43 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 79
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 33.9 bits (76), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
+PYVK+Y L K++T K+TL P +N++F++
Sbjct: 40 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY 76
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 33.1 bits (74), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 7 DPYVKV--YLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ Y+ + + +A +T K+TLNP +NE F F V
Sbjct: 43 DPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRV 83
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of
Synaptotagmin Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
DPY+K+ +L ++ K KT V ++TL+P ++E+F F
Sbjct: 45 DPYIKMTIL--PEKKHKVKTRVLRKTLDPAFDETFTF 79
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 32.3 bits (72), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
DPYVK+ L+ + R+ +KT +P ++E F F V
Sbjct: 45 GTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 9/46 (19%)
Query: 7 DPYVKVYLL-YKGQRVA--------KKKTHVKKRTLNPVYNESFVF 43
DP+VKVYLL +GQ + K++T +++LNP +N++ ++
Sbjct: 40 DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIY 85
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
DPYV++++ ++K+T +NPV+NE+F F
Sbjct: 28 DPYVELFISTTPD--SRKRTRHFNNDINPVWNETFEF 62
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
DPYV++++ ++K+T +NPV+NE+F F
Sbjct: 43 DPYVELFISTTPD--SRKRTRHFNNDINPVWNETFEF 77
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVF 43
DPYV++++ ++K+T +NPV+NE+F F
Sbjct: 43 DPYVELFISTTPD--SRKRTRHFNNDINPVWNETFEF 77
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
K DPYV V + G+ KK+T LNPV+ E+F FE
Sbjct: 34 KTGSSDPYVTVQV---GK--TKKRTKTIYGNLNPVWEENFHFEC 72
>pdb|2FK9|A Chain A, Human Protein Kinase C, Eta
Length = 157
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
LDPY+ V + +V +T K++T P YNE F V
Sbjct: 60 LDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANV 95
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 7 DPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEV 45
DPYV+V L V +T K++LNP +NE +F V
Sbjct: 42 DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 7 DPYVKVYLLYKGQRVAKK-KTHVKKRTLNPVYNESFVFEV 45
DPYV+V L + +T K++LNP +NE +F V
Sbjct: 30 DPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,555,061
Number of Sequences: 62578
Number of extensions: 41182
Number of successful extensions: 111
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 46
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)