Query psy12855
Match_columns 87
No_of_seqs 110 out of 1106
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 21:31:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08677 C2A_Synaptotagmin-13 C 99.9 1.2E-22 2.6E-27 107.2 7.9 77 3-80 29-105 (118)
2 cd08407 C2B_Synaptotagmin-13 C 99.9 2.7E-21 5.8E-26 105.0 7.9 79 4-82 36-114 (138)
3 cd08392 C2A_SLP-3 C2 domain fi 99.9 6.2E-21 1.3E-25 102.5 8.7 79 4-82 35-113 (128)
4 cd08381 C2B_PI3K_class_II C2 d 99.9 7.8E-21 1.7E-25 101.4 8.5 79 3-81 30-109 (122)
5 cd08680 C2_Kibra C2 domain fou 99.9 8E-21 1.7E-25 101.6 8.2 79 3-81 32-111 (124)
6 cd08406 C2B_Synaptotagmin-12 C 99.9 9.3E-21 2E-25 102.7 8.5 80 3-82 33-112 (136)
7 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.5E-20 3.3E-25 100.7 8.0 78 4-81 35-112 (125)
8 cd04029 C2A_SLP-4_5 C2 domain 99.8 2E-20 4.4E-25 100.2 8.4 79 3-81 34-112 (125)
9 cd04028 C2B_RIM1alpha C2 domai 99.8 4.7E-20 1E-24 100.8 9.1 76 3-81 48-124 (146)
10 cd08395 C2C_Munc13 C2 domain t 99.8 2.1E-19 4.5E-24 95.6 8.9 78 4-81 18-98 (120)
11 cd08408 C2B_Synaptotagmin-14_1 99.8 4.8E-19 1E-23 96.3 8.6 80 3-82 33-113 (138)
12 cd04010 C2B_RasA3 C2 domain se 99.8 1E-18 2.3E-23 95.8 9.0 80 3-82 16-108 (148)
13 cd08384 C2B_Rabphilin_Doc2 C2 99.8 8.6E-19 1.9E-23 94.6 8.0 80 3-82 31-110 (133)
14 cd08685 C2_RGS-like C2 domain 99.8 7.4E-19 1.6E-23 93.5 7.5 78 3-81 29-107 (119)
15 cd08402 C2B_Synaptotagmin-1 C2 99.8 1.7E-18 3.6E-23 93.9 8.7 80 3-82 33-112 (136)
16 cd08692 C2B_Tac2-N C2 domain s 99.8 3.1E-18 6.8E-23 92.3 9.5 76 4-80 33-109 (135)
17 cd08521 C2A_SLP C2 domain firs 99.8 2.1E-18 4.6E-23 91.9 8.3 79 3-81 33-111 (123)
18 cd08409 C2B_Synaptotagmin-15 C 99.8 3.1E-18 6.8E-23 93.0 8.8 76 4-79 33-108 (137)
19 KOG0696|consensus 99.8 2.1E-19 4.7E-24 111.1 4.5 79 2-81 197-275 (683)
20 cd08404 C2B_Synaptotagmin-4 C2 99.8 3.8E-18 8.3E-23 92.5 8.5 78 3-80 33-110 (136)
21 cd08385 C2A_Synaptotagmin-1-5- 99.8 4.5E-18 9.8E-23 90.8 8.3 77 3-81 34-110 (124)
22 cd08388 C2A_Synaptotagmin-4-11 99.8 4.6E-18 9.9E-23 91.4 8.3 77 4-82 36-113 (128)
23 cd08387 C2A_Synaptotagmin-8 C2 99.8 5.2E-18 1.1E-22 90.6 8.2 77 3-81 34-110 (124)
24 cd04030 C2C_KIAA1228 C2 domain 99.8 7.5E-18 1.6E-22 90.3 8.7 79 3-81 34-114 (127)
25 cd08405 C2B_Synaptotagmin-7 C2 99.8 5E-18 1.1E-22 92.0 8.0 79 3-81 33-111 (136)
26 cd04031 C2A_RIM1alpha C2 domai 99.8 6.9E-18 1.5E-22 90.1 8.0 78 3-80 34-112 (125)
27 cd08410 C2B_Synaptotagmin-17 C 99.8 8.7E-18 1.9E-22 91.0 8.5 78 3-80 32-109 (135)
28 KOG1030|consensus 99.8 4.3E-18 9.4E-23 93.6 7.2 69 4-80 25-93 (168)
29 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 8.5E-18 1.8E-22 93.5 8.3 79 3-81 45-124 (162)
30 cd08403 C2B_Synaptotagmin-3-5- 99.8 1.2E-17 2.6E-22 90.3 8.5 78 3-80 32-109 (134)
31 cd08682 C2_Rab11-FIP_classI C2 99.8 1E-17 2.2E-22 89.8 8.0 74 3-81 17-93 (126)
32 cd08690 C2_Freud-1 C2 domain f 99.8 2.6E-17 5.6E-22 90.8 9.3 79 3-81 22-107 (155)
33 cd04039 C2_PSD C2 domain prese 99.7 2.5E-17 5.3E-22 86.3 8.4 71 5-81 25-95 (108)
34 cd08389 C2A_Synaptotagmin-14_1 99.7 3.1E-17 6.8E-22 87.8 7.7 76 3-81 34-110 (124)
35 cd08390 C2A_Synaptotagmin-15-1 99.7 5E-17 1.1E-21 86.6 8.4 78 3-82 33-110 (123)
36 cd08686 C2_ABR C2 domain in th 99.7 6.7E-17 1.4E-21 85.3 8.6 75 4-82 13-94 (118)
37 cd08688 C2_KIAA0528-like C2 do 99.7 2.9E-17 6.3E-22 86.2 7.0 74 3-81 18-92 (110)
38 cd00276 C2B_Synaptotagmin C2 d 99.7 9.3E-17 2E-21 86.6 9.1 78 3-80 32-109 (134)
39 cd04041 C2A_fungal C2 domain f 99.7 3.8E-17 8.2E-22 85.9 7.0 75 4-80 21-96 (111)
40 cd04009 C2B_Munc13-like C2 dom 99.7 7.4E-17 1.6E-21 87.2 8.2 79 3-81 34-116 (133)
41 cd04048 C2A_Copine C2 domain f 99.7 7.9E-17 1.7E-21 85.7 7.9 77 3-81 18-100 (120)
42 cd04016 C2_Tollip C2 domain pr 99.7 2.2E-16 4.8E-21 84.1 9.5 69 4-80 20-89 (121)
43 cd08379 C2D_MCTP_PRT_plant C2 99.7 1.9E-16 4E-21 84.9 8.9 70 3-80 21-96 (126)
44 cd04037 C2E_Ferlin C2 domain f 99.7 3.3E-16 7.2E-21 83.8 9.5 76 3-83 18-93 (124)
45 cd08386 C2A_Synaptotagmin-7 C2 99.7 1.5E-16 3.3E-21 85.0 7.6 77 3-81 34-111 (125)
46 cd04032 C2_Perforin C2 domain 99.7 2.5E-16 5.3E-21 84.5 8.1 71 4-80 46-116 (127)
47 cd04018 C2C_Ferlin C2 domain t 99.7 4.5E-16 9.8E-21 85.7 8.6 71 4-80 33-103 (151)
48 cd08678 C2_C21orf25-like C2 do 99.7 4.1E-16 8.9E-21 83.6 8.2 72 3-80 15-86 (126)
49 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.9E-16 4.2E-21 84.9 6.8 74 3-81 18-93 (127)
50 cd08375 C2_Intersectin C2 doma 99.7 3.8E-16 8.3E-21 84.7 7.7 72 3-81 33-104 (136)
51 cd08376 C2B_MCTP_PRT C2 domain 99.7 1.1E-15 2.4E-20 80.7 9.0 71 3-80 18-88 (116)
52 cd08373 C2A_Ferlin C2 domain f 99.7 1.3E-15 2.9E-20 81.6 9.3 73 3-80 12-84 (127)
53 cd04035 C2A_Rabphilin_Doc2 C2 99.7 7.1E-16 1.5E-20 82.3 7.9 77 4-81 34-111 (123)
54 cd04036 C2_cPLA2 C2 domain pre 99.7 5.8E-16 1.3E-20 82.2 7.4 72 4-80 19-90 (119)
55 KOG1028|consensus 99.7 2.6E-16 5.6E-21 98.3 6.9 77 3-81 185-261 (421)
56 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 1.2E-15 2.6E-20 81.3 8.3 72 3-81 19-90 (121)
57 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.5E-15 3.3E-20 81.0 8.7 72 3-81 18-89 (123)
58 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.5E-15 3.3E-20 80.8 8.7 71 3-80 18-88 (121)
59 cd08675 C2B_RasGAP C2 domain s 99.7 1.8E-15 3.8E-20 82.2 8.8 78 3-81 16-106 (137)
60 cd04026 C2_PKC_alpha_gamma C2 99.7 1.1E-15 2.4E-20 82.3 8.0 78 3-81 31-108 (131)
61 cd04043 C2_Munc13_fungal C2 do 99.7 3.8E-15 8.1E-20 79.7 9.6 74 3-80 19-92 (126)
62 cd04011 C2B_Ferlin C2 domain s 99.6 7E-16 1.5E-20 81.0 6.2 74 3-81 18-93 (111)
63 cd04033 C2_NEDD4_NEDD4L C2 dom 99.6 2.8E-15 6.1E-20 80.9 8.4 76 3-81 18-95 (133)
64 cd04038 C2_ArfGAP C2 domain pr 99.6 4E-15 8.6E-20 81.5 8.4 69 4-80 20-88 (145)
65 cd08378 C2B_MCTP_PRT_plant C2 99.6 3E-15 6.4E-20 79.8 7.5 69 5-81 16-84 (121)
66 cd04019 C2C_MCTP_PRT_plant C2 99.6 6.4E-15 1.4E-19 81.1 8.5 72 3-81 18-90 (150)
67 cd04050 C2B_Synaptotagmin-like 99.6 7.1E-15 1.5E-19 76.5 8.1 68 3-80 18-85 (105)
68 cd08394 C2A_Munc13 C2 domain f 99.6 1.1E-14 2.3E-19 77.8 8.8 68 4-81 18-85 (127)
69 cd08681 C2_fungal_Inn1p-like C 99.6 6.2E-15 1.3E-19 78.1 7.8 69 4-80 20-89 (118)
70 cd04047 C2B_Copine C2 domain s 99.6 4.4E-15 9.6E-20 77.8 7.2 76 4-81 19-98 (110)
71 cd04024 C2A_Synaptotagmin-like 99.6 4E-15 8.7E-20 79.7 7.1 72 3-81 21-92 (128)
72 cd08691 C2_NEDL1-like C2 domai 99.6 1E-14 2.2E-19 79.2 8.6 74 4-81 19-104 (137)
73 cd04052 C2B_Tricalbin-like C2 99.6 1E-14 2.2E-19 76.7 8.1 72 2-80 9-80 (111)
74 cd04046 C2_Calpain C2 domain p 99.6 1.8E-14 4E-19 77.2 9.2 69 3-80 21-89 (126)
75 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.5E-14 3.3E-19 77.0 8.5 70 3-79 18-87 (121)
76 cd08374 C2F_Ferlin C2 domain s 99.6 8.9E-15 1.9E-19 78.9 7.5 75 5-81 24-121 (133)
77 cd08391 C2A_C2C_Synaptotagmin_ 99.6 1E-14 2.3E-19 77.4 7.6 69 4-80 26-94 (121)
78 cd08382 C2_Smurf-like C2 domai 99.6 1.8E-14 4E-19 76.9 8.4 70 4-81 19-90 (123)
79 KOG1028|consensus 99.6 8.9E-15 1.9E-19 91.5 8.2 78 3-80 316-393 (421)
80 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.2E-14 2.7E-19 77.0 7.4 70 3-80 19-88 (119)
81 cd04045 C2C_Tricalbin-like C2 99.6 2E-14 4.4E-19 76.5 8.2 71 3-80 19-89 (120)
82 cd04014 C2_PKC_epsilon C2 doma 99.6 3.9E-14 8.4E-19 76.4 8.9 69 4-80 33-101 (132)
83 cd04044 C2A_Tricalbin-like C2 99.6 2.7E-14 5.8E-19 76.1 8.2 71 4-80 22-92 (124)
84 cd08400 C2_Ras_p21A1 C2 domain 99.6 5.7E-14 1.2E-18 75.3 9.2 70 4-80 20-89 (126)
85 cd04021 C2_E3_ubiquitin_ligase 99.6 3E-14 6.6E-19 76.3 8.1 69 4-80 20-88 (125)
86 cd04015 C2_plant_PLD C2 domain 99.6 6.4E-14 1.4E-18 77.8 9.1 70 3-80 55-124 (158)
87 cd04040 C2D_Tricalbin-like C2 99.6 3.4E-14 7.5E-19 74.9 7.4 72 3-80 17-88 (115)
88 cd08676 C2A_Munc13-like C2 dom 99.6 3.9E-14 8.5E-19 78.1 7.7 73 3-81 46-142 (153)
89 cd00275 C2_PLC_like C2 domain 99.6 5.9E-14 1.3E-18 75.1 8.2 76 3-81 22-99 (128)
90 cd04027 C2B_Munc13 C2 domain s 99.5 1.1E-13 2.3E-18 74.3 8.0 69 4-80 20-99 (127)
91 cd04017 C2D_Ferlin C2 domain f 99.5 1.9E-13 4E-18 74.1 8.3 70 3-77 19-95 (135)
92 cd04051 C2_SRC2_like C2 domain 99.5 8.3E-14 1.8E-18 74.4 6.5 74 4-81 19-95 (125)
93 cd04049 C2_putative_Elicitor-r 99.5 2.1E-13 4.5E-18 72.8 8.0 73 4-81 20-94 (124)
94 PF00168 C2: C2 domain; Inter 99.5 3.4E-13 7.5E-18 67.1 7.9 69 3-75 17-85 (85)
95 PLN02223 phosphoinositide phos 99.5 4.7E-13 1E-17 85.2 8.3 75 5-81 434-508 (537)
96 cd08383 C2A_RasGAP C2 domain ( 99.5 1.9E-12 4.2E-17 68.3 9.1 71 4-79 16-86 (117)
97 PLN03008 Phospholipase D delta 99.4 2.4E-12 5.1E-17 85.3 7.8 69 4-80 75-143 (868)
98 PLN02952 phosphoinositide phos 99.4 3.9E-12 8.4E-17 82.2 8.0 74 6-81 497-570 (599)
99 PLN02230 phosphoinositide phos 99.4 4.3E-12 9.3E-17 82.0 7.9 74 6-81 496-569 (598)
100 PLN02222 phosphoinositide phos 99.4 6.4E-12 1.4E-16 81.0 8.3 75 5-81 478-552 (581)
101 smart00239 C2 Protein kinase C 99.3 1.9E-11 4.1E-16 62.1 8.1 73 4-80 19-91 (101)
102 KOG0169|consensus 99.3 3.1E-12 6.6E-17 83.4 5.6 76 4-81 639-715 (746)
103 PLN03200 cellulose synthase-in 99.3 9.9E-12 2.2E-16 88.2 6.2 71 4-80 1997-2067(2102)
104 KOG1328|consensus 99.3 2.9E-12 6.3E-17 83.7 2.9 79 2-80 964-1046(1103)
105 PLN02228 Phosphoinositide phos 99.2 6.3E-11 1.4E-15 76.4 7.9 74 6-81 458-532 (567)
106 cd00030 C2 C2 domain. The C2 d 99.2 6.2E-10 1.3E-14 56.2 7.9 72 4-81 18-89 (102)
107 KOG0905|consensus 99.2 2.6E-11 5.6E-16 82.4 3.3 77 4-80 1543-1620(1639)
108 cd04013 C2_SynGAP_like C2 doma 99.1 4.8E-10 1E-14 61.5 7.6 68 6-80 27-98 (146)
109 KOG1264|consensus 99.1 9E-10 2E-14 73.2 6.9 73 6-80 1085-1159(1267)
110 COG5038 Ca2+-dependent lipid-b 99.0 6E-10 1.3E-14 75.8 6.1 73 3-81 1058-1130(1227)
111 KOG1013|consensus 99.0 2.4E-10 5.2E-15 69.0 3.1 77 2-78 250-326 (362)
112 KOG1011|consensus 99.0 8.2E-10 1.8E-14 72.2 4.6 69 2-78 312-391 (1283)
113 COG5038 Ca2+-dependent lipid-b 98.7 1.1E-07 2.4E-12 65.2 6.9 71 3-80 456-526 (1227)
114 KOG1011|consensus 98.7 8.9E-08 1.9E-12 63.0 6.1 78 3-80 1142-1222(1283)
115 cd08689 C2_fungal_Pkc1p C2 dom 98.6 2.7E-07 6E-12 47.9 6.5 65 3-79 20-84 (109)
116 KOG2059|consensus 98.5 1.9E-07 4.2E-12 61.4 5.1 67 3-77 23-89 (800)
117 KOG2059|consensus 98.5 1.5E-07 3.3E-12 61.9 4.3 79 2-81 147-239 (800)
118 cd08684 C2A_Tac2-N C2 domain f 98.4 3.5E-07 7.5E-12 46.1 3.5 59 23-83 36-94 (103)
119 KOG1031|consensus 98.4 5.4E-07 1.2E-11 58.9 5.0 72 4-80 23-95 (1169)
120 PLN02270 phospholipase D alpha 98.4 1.7E-06 3.7E-11 58.1 7.3 69 4-80 45-114 (808)
121 KOG1328|consensus 98.3 2E-07 4.3E-12 61.9 1.6 39 24-64 179-217 (1103)
122 KOG1326|consensus 98.2 5.7E-07 1.2E-11 61.1 0.9 75 3-82 631-705 (1105)
123 KOG1013|consensus 98.2 2E-07 4.4E-12 56.7 -1.2 78 2-79 110-188 (362)
124 cd08397 C2_PI3K_class_III C2 d 98.0 0.00017 3.8E-09 40.3 8.6 76 5-80 29-106 (159)
125 cd08683 C2_C2cd3 C2 domain fou 98.0 5.8E-05 1.3E-09 40.7 6.0 74 6-80 33-129 (143)
126 KOG2060|consensus 97.9 3.6E-06 7.9E-11 52.1 0.6 73 5-80 290-363 (405)
127 PLN02964 phosphatidylserine de 97.8 4.8E-05 1E-09 50.6 4.6 55 23-79 81-135 (644)
128 KOG1327|consensus 97.8 8E-05 1.7E-09 48.3 5.0 75 4-81 155-234 (529)
129 PF00792 PI3K_C2: Phosphoinosi 97.6 0.0026 5.6E-08 34.8 8.8 73 8-80 4-84 (142)
130 PLN02352 phospholipase D epsil 97.4 0.0007 1.5E-08 45.9 6.0 60 7-80 37-96 (758)
131 cd08380 C2_PI3K_like C2 domain 97.4 0.0024 5.3E-08 35.4 7.3 75 6-80 28-106 (156)
132 PF14429 DOCK-C2: C2 domain in 97.2 0.0051 1.1E-07 35.1 7.4 62 22-83 59-123 (184)
133 KOG1326|consensus 97.1 0.00043 9.2E-09 47.9 2.7 70 2-76 223-299 (1105)
134 cd08695 C2_Dock-B C2 domains f 97.1 0.0045 9.7E-08 35.6 6.4 60 21-80 52-113 (189)
135 cd08693 C2_PI3K_class_I_beta_d 97.1 0.016 3.4E-07 32.9 8.3 75 6-80 27-119 (173)
136 cd08398 C2_PI3K_class_I_alpha 97.0 0.018 4E-07 32.2 7.9 74 6-80 26-105 (158)
137 KOG1265|consensus 96.9 0.0015 3.3E-08 45.1 3.6 72 3-80 717-793 (1189)
138 cd08694 C2_Dock-A C2 domains f 96.7 0.029 6.3E-07 32.5 7.5 59 21-79 52-114 (196)
139 cd08399 C2_PI3K_class_I_gamma 96.6 0.032 7E-07 31.9 7.3 55 8-62 32-87 (178)
140 cd08679 C2_DOCK180_related C2 96.3 0.07 1.5E-06 30.3 7.3 54 30-83 60-119 (178)
141 cd08696 C2_Dock-C C2 domains f 96.0 0.11 2.3E-06 29.8 7.2 62 22-83 54-121 (179)
142 cd04012 C2A_PI3K_class_II C2 d 96.0 0.11 2.4E-06 29.4 7.1 75 6-80 29-118 (171)
143 PF15625 CC2D2AN-C2: CC2D2A N- 96.0 0.13 2.8E-06 29.1 8.5 70 8-83 39-108 (168)
144 KOG3837|consensus 95.8 0.007 1.5E-07 38.7 2.1 73 7-79 389-471 (523)
145 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.18 3.8E-06 28.3 7.9 66 8-76 34-110 (156)
146 smart00142 PI3K_C2 Phosphoinos 95.5 0.14 3E-06 26.4 6.0 57 7-63 33-91 (100)
147 cd08697 C2_Dock-D C2 domains f 95.2 0.3 6.5E-06 28.2 8.3 60 21-80 55-123 (185)
148 KOG1327|consensus 94.3 0.07 1.5E-06 35.3 3.4 59 21-81 40-102 (529)
149 PF12416 DUF3668: Cep120 prote 91.2 1.6 3.4E-05 27.7 6.1 59 23-81 30-94 (340)
150 cd08687 C2_PKN-like C2 domain 91.0 1.3 2.8E-05 22.8 5.9 27 33-63 31-57 (98)
151 KOG0906|consensus 88.0 1.1 2.4E-05 30.9 3.8 46 36-81 78-124 (843)
152 PF07162 B9-C2: Ciliary basal 86.4 4.3 9.2E-05 22.9 8.8 72 6-77 17-100 (168)
153 PF11618 DUF3250: Protein of u 86.3 2.2 4.7E-05 22.4 3.7 56 23-80 12-72 (107)
154 PF10358 NT-C2: N-terminal C2 86.2 3.7 8.1E-05 22.1 5.9 49 32-80 49-103 (143)
155 PF01060 DUF290: Transthyretin 80.4 5.4 0.00012 19.6 4.5 29 54-82 13-41 (80)
156 KOG4028|consensus 74.1 6.2 0.00014 21.7 3.0 24 54-77 75-98 (175)
157 KOG1452|consensus 72.1 9.8 0.00021 24.3 3.8 53 7-67 75-127 (442)
158 KOG0694|consensus 63.4 3.8 8.1E-05 28.5 0.9 51 6-64 28-78 (694)
159 PF14924 DUF4497: Protein of u 45.3 21 0.00046 18.7 1.8 43 39-81 11-60 (112)
160 KOG0904|consensus 37.7 90 0.0019 23.2 4.2 38 24-61 382-420 (1076)
161 PF14909 SPATA6: Spermatogenes 36.5 80 0.0017 17.6 7.8 66 5-76 19-94 (140)
162 KOG1673|consensus 35.8 49 0.0011 19.1 2.3 28 52-81 66-93 (205)
163 PHA03351 tegument protein UL16 34.7 95 0.0021 18.0 4.9 54 30-83 36-90 (235)
164 KOG4269|consensus 29.3 19 0.00041 26.3 0.1 38 8-45 777-814 (1112)
165 PF04704 Zfx_Zfy_act: Zfx / Zf 25.0 49 0.0011 21.1 1.3 30 2-31 294-323 (330)
166 PF15084 DUF4550: Domain of un 24.3 83 0.0018 16.5 1.9 27 35-61 52-81 (99)
167 PF13103 TonB_2: TonB C termin 22.6 48 0.001 16.0 0.8 29 8-39 28-56 (85)
168 KOG4428|consensus 22.2 3.1E+02 0.0067 19.8 5.0 60 5-64 50-110 (813)
No 1
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.89 E-value=1.2e-22 Score=107.17 Aligned_cols=77 Identities=19% Similarity=0.253 Sum_probs=69.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.|.+||||++++.++.+ ..+++|++++++.||.|||+|.|.++.+++....|.++|||++.++++++||++.+++++
T Consensus 29 ~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~ 105 (118)
T cd08677 29 DAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLAD 105 (118)
T ss_pred CCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEcccc
Confidence 35689999999976543 347799999999999999999999999888888999999999999999999999999985
No 2
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.86 E-value=2.7e-21 Score=104.97 Aligned_cols=79 Identities=30% Similarity=0.360 Sum_probs=71.8
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
+.+||||++++.++.+...+++|++++++.||.|||+|.|.++.+++....|.++||+++..+++++||++.+++..++
T Consensus 36 ~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g 114 (138)
T cd08407 36 LGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSG 114 (138)
T ss_pred CCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCC
Confidence 4489999999998777777899999999999999999999999888877899999999999999999999999987654
No 3
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.86 E-value=6.2e-21 Score=102.54 Aligned_cols=79 Identities=32% Similarity=0.379 Sum_probs=70.8
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
|.+||||++++.|......++||++++++.+|.|||+|.|.++..++....|.++||+.+..+++++||++.++|++..
T Consensus 35 g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 35 KKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred CCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 6789999999998765566889999999999999999999998777777899999999999889999999999998764
No 4
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.85 E-value=7.8e-21 Score=101.44 Aligned_cols=79 Identities=32% Similarity=0.504 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEe-cCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~-~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+......+++|++++++.||.|||+|.|.+ +..++....|.++||+++..+++++||++.+++.+.
T Consensus 30 ~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 109 (122)
T cd08381 30 GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL 109 (122)
T ss_pred CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEecccc
Confidence 4678999999998776556689999999999999999999997 555566678999999999998899999999999774
No 5
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.85 E-value=8e-21 Score=101.57 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=70.5
Q ss_pred CCCCCCEEEEEEEeCCce-eeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQR-VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~-~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.|+... ..+++|++.+++.+|.|||+|.|.++..++....|.++||+++..+++++||++.++|++.
T Consensus 32 ~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 32 PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 467899999999987654 3588999999999999999999999988888889999999999988999999999998764
No 6
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.85 E-value=9.3e-21 Score=102.74 Aligned_cols=80 Identities=35% Similarity=0.577 Sum_probs=70.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
++.+||||++++.++++...+++|++++++.||.|||+|.|.++..++....|.|+||+++..+++++||++.++....+
T Consensus 33 ~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g 112 (136)
T cd08406 33 KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASG 112 (136)
T ss_pred CCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCC
Confidence 46789999999998776666789999999999999999999998877877899999999999999999999999876544
No 7
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.84 E-value=1.5e-20 Score=100.69 Aligned_cols=78 Identities=36% Similarity=0.484 Sum_probs=69.3
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
|.+||||++++.+......+++|++++++.||.|||+|.|.+...++....|.++||+++..+++++||++.++|.+.
T Consensus 35 g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 35 QRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred CCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 678999999998776555578999999999999999999998876676679999999999999999999999998874
No 8
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.84 E-value=2e-20 Score=100.19 Aligned_cols=79 Identities=33% Similarity=0.525 Sum_probs=69.1
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.++.....+++|++++++.+|.|||+|.|.++...+....|.++||+++..+++++||++.+++++.
T Consensus 34 ~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~ 112 (125)
T cd04029 34 KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSW 112 (125)
T ss_pred CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcc
Confidence 3678999999998776555678999999999999999999999876666678999999999999999999999998764
No 9
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.84 E-value=4.7e-20 Score=100.84 Aligned_cols=76 Identities=32% Similarity=0.499 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEE-EcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL-DWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~-~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.++.....++||++++++.||.|||+|.|.+. +....|.++|| +++...++++||++.++|++.
T Consensus 48 ~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l 124 (146)
T cd04028 48 KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL 124 (146)
T ss_pred CCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc
Confidence 46789999999988766667899999999999999999999987 34578999999 577788889999999999874
No 10
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=2.1e-19 Score=95.56 Aligned_cols=78 Identities=21% Similarity=0.303 Sum_probs=63.9
Q ss_pred CCCCCEEEEEEEe--CCceeeeEecccccCCCCCeeceEEEEEecCC-CCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLY--KGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~--~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~-~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
|.+||||++++.. .+....+++|+++.++.||.|||+|.|.+..+ .+....|.+.+||++..+++++||++.+++++
T Consensus 18 g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~ 97 (120)
T cd08395 18 GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRD 97 (120)
T ss_pred CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHH
Confidence 6789999999863 12334467899999999999999999998754 34456799999999988889999999998765
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 98 ~ 98 (120)
T cd08395 98 I 98 (120)
T ss_pred C
Confidence 4
No 11
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.81 E-value=4.8e-19 Score=96.29 Aligned_cols=80 Identities=30% Similarity=0.473 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEEEeCC-ceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~-~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.. +...+++|++++++.+|.|||+|.|.++..++....|.++||+++..+++++||++.+++...
T Consensus 33 ~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 33 NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 3568999999998753 334578999999999999999999999887777789999999999899999999999998865
Q ss_pred e
Q psy12855 82 F 82 (87)
Q Consensus 82 ~ 82 (87)
+
T Consensus 113 ~ 113 (138)
T cd08408 113 G 113 (138)
T ss_pred C
Confidence 4
No 12
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.80 E-value=1e-18 Score=95.85 Aligned_cols=80 Identities=25% Similarity=0.364 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEec-------------CCCCcccEEEEEEEEcCCCCCCe
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVP-------------ADNLDSVSLELLLLDWDRVTKNE 69 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~-------------~~~~~~~~l~v~v~~~~~~~~~~ 69 (87)
+|.+||||++++.+......+++|++++++.+|.|||+|.|.+. ..++....|.+.+|+++..+.++
T Consensus 16 ~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~dd 95 (148)
T cd04010 16 NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDV 95 (148)
T ss_pred CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCc
Confidence 57899999999976543445789999999999999999999984 22344467999999999888899
Q ss_pred eeEEEEEecCCce
Q psy12855 70 KIFFFFFSSSSSF 82 (87)
Q Consensus 70 ~lG~~~~~l~~~~ 82 (87)
+||++.+++.+..
T Consensus 96 fLG~v~i~l~~l~ 108 (148)
T cd04010 96 FLGEVRIPLRGLD 108 (148)
T ss_pred eeEEEEEeccccc
Confidence 9999999987643
No 13
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.79 E-value=8.6e-19 Score=94.65 Aligned_cols=80 Identities=33% Similarity=0.470 Sum_probs=68.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
.+.+||||++++.+......+++|++++++.+|.|||+|.|.+...++....|.++|||++..+++++||++.+++++.+
T Consensus 31 ~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~ 110 (133)
T cd08384 31 NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKG 110 (133)
T ss_pred CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCCCC
Confidence 35789999999987655556789999999999999999999987665555689999999998888999999999998754
No 14
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.79 E-value=7.4e-19 Score=93.45 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCC-CCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT-KNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~-~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.+......+++|++.+++.+|.|||+|.|.+...++. ..+.++||+++... ++++||++.+++.+.
T Consensus 29 ~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 29 SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC-CEEEEEEECCCCCcCCCEEEEEEEecHHHh
Confidence 4678999999999876556688999999999999999999998766554 46889999988765 468999999998654
No 15
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.79 E-value=1.7e-18 Score=93.89 Aligned_cols=80 Identities=46% Similarity=0.719 Sum_probs=68.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
++.+||||++++.+.+....+++|++++++.+|.|||+|.|.++..++....|.+++||++..+++++||++.+++...+
T Consensus 33 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~ 112 (136)
T cd08402 33 GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112 (136)
T ss_pred CCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCC
Confidence 46789999999976655556788999999999999999999987666555689999999999989999999999987654
No 16
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.79 E-value=3.1e-18 Score=92.32 Aligned_cols=76 Identities=24% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCC-CCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTL-NPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~-~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+..||||++++.+.+++..++||++++++. +|.|||+|.|.++.+.. ...+.+++||++..+++++||++.++.++
T Consensus 33 ~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 33 LTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 446899999999888888899999999996 58999999999987644 47899999999998999999999999876
No 17
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.78 E-value=2.1e-18 Score=91.89 Aligned_cols=79 Identities=34% Similarity=0.505 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.+......+++|++.+++.+|.|||+|.|.+...++....|.+.+|+++..+++++||++.+++++.
T Consensus 33 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l 111 (123)
T cd08521 33 KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW 111 (123)
T ss_pred CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence 4678999999997665444578999999999999999999998776665578999999999888899999999998775
No 18
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.78 E-value=3.1e-18 Score=93.00 Aligned_cols=76 Identities=32% Similarity=0.419 Sum_probs=67.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+.+||||++.+.+..+...+++|++++++.||.|||+|.|.++.+++....|.++||+++..+++++||++.++..
T Consensus 33 ~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~ 108 (137)
T cd08409 33 AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPF 108 (137)
T ss_pred CCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCc
Confidence 5589999999988765556789999999999999999999998877777799999999998889999999999853
No 19
>KOG0696|consensus
Probab=99.78 E-value=2.1e-19 Score=111.13 Aligned_cols=79 Identities=35% Similarity=0.563 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.||.+||||++.+.|+.+...+++|++++.++||.|||+|.|.+.+.+.+ +.|.++||||+..++++|+|...+.+++.
T Consensus 197 pNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~Dkd-rRlsiEvWDWDrTsRNDFMGslSFgisEl 275 (683)
T KOG0696|consen 197 PNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKD-RRLSIEVWDWDRTSRNDFMGSLSFGISEL 275 (683)
T ss_pred CCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEeccccccc-ceeEEEEecccccccccccceecccHHHH
Confidence 37899999999999988888899999999999999999999999988776 68999999999999999999999887653
No 20
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.77 E-value=3.8e-18 Score=92.48 Aligned_cols=78 Identities=55% Similarity=0.853 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++.+.+....+.+|++++++.+|.|+|+|.|.++...+....|.++|||++..+++++||++.+++..
T Consensus 33 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 33 SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 467899999999766555567899999999999999999999876655556899999999999899999999998876
No 21
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.77 E-value=4.5e-18 Score=90.84 Aligned_cols=77 Identities=39% Similarity=0.595 Sum_probs=65.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.+... .+++|++.+++.+|.|||+|.|.+...++....|.+.||+++..+++++||++.+++++.
T Consensus 34 ~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~ 110 (124)
T cd08385 34 GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTV 110 (124)
T ss_pred CCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcc
Confidence 35689999999976532 378999999999999999999998765555568999999999988899999999999874
No 22
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.77 E-value=4.6e-18 Score=91.42 Aligned_cols=77 Identities=35% Similarity=0.544 Sum_probs=64.4
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
+.+||||++.+.+.. ..+.+|++++++.+|.|||+|.|. +...++....|.+.||+++..+++++||++.+++++..
T Consensus 36 ~~~DpyV~v~l~~~~--~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~ 113 (128)
T cd08388 36 GTSDPYVKLQLLPEK--EHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113 (128)
T ss_pred CCcCCEEEEEEeCCc--CceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccC
Confidence 678999999987553 236799999999999999999994 65555555689999999999889999999999998763
No 23
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.77 E-value=5.2e-18 Score=90.63 Aligned_cols=77 Identities=39% Similarity=0.634 Sum_probs=66.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.+. ..++|++++++.+|.|+|+|.|.+...++....|.+.||+++..+++++||++.+++++.
T Consensus 34 ~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 110 (124)
T cd08387 34 SGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEV 110 (124)
T ss_pred CCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccc
Confidence 46789999999965533 368999999999999999999998776665568999999999988899999999998875
No 24
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.77 E-value=7.5e-18 Score=90.27 Aligned_cols=79 Identities=29% Similarity=0.500 Sum_probs=67.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC--CCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV--TKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~--~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++.+.+....+++|++++++.+|.|||+|.|.+...++....|.+.+|+.+.. +++++||++.+++++
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 34 SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred CCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 367899999999876545568899999999999999999999877666667899999998875 678999999999987
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 114 l 114 (127)
T cd04030 114 L 114 (127)
T ss_pred c
Confidence 4
No 25
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.77 E-value=5e-18 Score=92.00 Aligned_cols=79 Identities=47% Similarity=0.802 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++.+.+.+....+++|++.+++.+|.|||+|.|.++...+....|.|+||+++..+++++||++.+++.+.
T Consensus 33 ~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 33 NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 4578999999987654444578999999999999999999998765555568999999999988899999999998764
No 26
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.76 E-value=6.9e-18 Score=90.15 Aligned_cols=78 Identities=31% Similarity=0.491 Sum_probs=65.1
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecC-CCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-DNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~-~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++++.+......+++|++.+++.+|.|||+|.|.+.. .++....|.++||+++..+.+++||++.+++++
T Consensus 34 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 34 GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 356899999999765444457899999999999999999998533 444446899999999998889999999999987
No 27
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.76 E-value=8.7e-18 Score=91.04 Aligned_cols=78 Identities=32% Similarity=0.484 Sum_probs=65.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++.+......+++|++++++.+|.|||+|.|.++..++....|.++||+++..+++++||++.++...
T Consensus 32 ~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~ 109 (135)
T cd08410 32 SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYS 109 (135)
T ss_pred CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCcc
Confidence 357899999998655444457899999999999999999999877666656899999999998899999999876544
No 28
>KOG1030|consensus
Probab=99.76 E-value=4.3e-18 Score=93.61 Aligned_cols=69 Identities=28% Similarity=0.358 Sum_probs=61.0
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+. ++ +.+|++..++.||+|||.+.|.+... ...|.++|||++.+..++++|.+++++.+
T Consensus 25 ~sSDPyVVl~lg---~q--~lkT~~v~~n~NPeWNe~ltf~v~d~---~~~lkv~VyD~D~fs~dD~mG~A~I~l~p 93 (168)
T KOG1030|consen 25 GSSDPYVVLELG---NQ--KLKTRVVYKNLNPEWNEELTFTVKDP---NTPLKVTVYDKDTFSSDDFMGEATIPLKP 93 (168)
T ss_pred cCCCCeEEEEEC---Ce--eeeeeeecCCCCCcccceEEEEecCC---CceEEEEEEeCCCCCcccccceeeeccHH
Confidence 578999999993 22 88999999999999999999999655 25899999999999999999999998865
No 29
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.76 E-value=8.5e-18 Score=93.53 Aligned_cols=79 Identities=30% Similarity=0.511 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEe-cCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~-~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.+......+++|++++++.||.|||+|.|.. ...++....|.++||+++..+++++||++.+++++.
T Consensus 45 ~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~ 124 (162)
T cd04020 45 GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTG 124 (162)
T ss_pred CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcc
Confidence 3678999999997665555689999999999999999999984 344444568999999999988899999999998864
No 30
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.76 E-value=1.2e-17 Score=90.35 Aligned_cols=78 Identities=50% Similarity=0.757 Sum_probs=66.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++.+.+....+++|++.+++.+|.|+|+|.|.+....+....|.++|||++..+++++||++.+++..
T Consensus 32 ~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 32 TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 367899999998766555567899999999999999999999876655556799999999999999999999998764
No 31
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.75 E-value=1e-17 Score=89.77 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=61.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC---CCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD---NLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~---~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+|.+||||.+.+. . .+++|++++++.+|.|||.|.|.+... +.....|.+.+|+++..+++++||++.++++
T Consensus 17 ~g~~dpYv~v~l~--~---~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~ 91 (126)
T cd08682 17 SGTNDAYVIIQLG--K---EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLN 91 (126)
T ss_pred CcCCCceEEEEEC--C---eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHH
Confidence 4678999999982 2 277999999999999999999998652 2334689999999998888999999999887
Q ss_pred Cc
Q psy12855 80 SS 81 (87)
Q Consensus 80 ~~ 81 (87)
+.
T Consensus 92 ~l 93 (126)
T cd08682 92 DL 93 (126)
T ss_pred Hh
Confidence 64
No 32
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.75 E-value=2.6e-17 Score=90.76 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC------CCcccEEEEEEEEcCCC-CCCeeeEEEE
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD------NLDSVSLELLLLDWDRV-TKNEKIFFFF 75 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~------~~~~~~l~v~v~~~~~~-~~~~~lG~~~ 75 (87)
++..||||++++........+.+|++++++.||.|||+|.|.+... .+....|.+++|+++.+ ..+++||++.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 5678999999975333455689999999999999999999998654 24456799999999875 5789999999
Q ss_pred EecCCc
Q psy12855 76 FSSSSS 81 (87)
Q Consensus 76 ~~l~~~ 81 (87)
++|+..
T Consensus 102 i~L~~l 107 (155)
T cd08690 102 VKLEPL 107 (155)
T ss_pred EEcccc
Confidence 998764
No 33
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.75 E-value=2.5e-17 Score=86.30 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=60.2
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+||||++.+ .. .+++|++++++.+|.|||.|.|.+..... ...|.+.|||++..+.+++||++.++|++.
T Consensus 25 ~~DPYv~v~~--~~---~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l 95 (108)
T cd04039 25 DMDPFVIISF--GR---RVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQEL 95 (108)
T ss_pred ccCceEEEEE--CC---EeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHH
Confidence 4799999998 22 26799999999999999999999865443 257999999999999999999999998764
No 34
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.73 E-value=3.1e-17 Score=87.76 Aligned_cols=76 Identities=28% Similarity=0.360 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++..||||++.+.+... .+++|++.+. .||.|||+|.|. ++..++....|.++||+++..++++++|++.++|++.
T Consensus 34 ~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 34 GGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred CCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 46689999998876633 4788998877 999999999998 7777777789999999999998999999999998865
No 35
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.73 E-value=5e-17 Score=86.63 Aligned_cols=78 Identities=32% Similarity=0.473 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
.+.+||||++++.+... ...+|+.++++.+|.|||.|.|.+....+....|.+.+|+++..+.+++||++.+++++..
T Consensus 33 ~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~ 110 (123)
T cd08390 33 VAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLD 110 (123)
T ss_pred CCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEecccee
Confidence 46689999999876543 3678999999999999999999987665555689999999998888899999999998753
No 36
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.73 E-value=6.7e-17 Score=85.28 Aligned_cols=75 Identities=23% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEc-------CCCCCCeeeEEEEE
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW-------DRVTKNEKIFFFFF 76 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~-------~~~~~~~~lG~~~~ 76 (87)
+.+||||.+++.+.+....+++|++.+++.+|.|||+|.|.+.. +..|.+.+|++ +..+.++++|.+.+
T Consensus 13 ~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~----s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 13 QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG----SQTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC----CCEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 45899999998655443458999999999999999999999863 35899999997 35577899999999
Q ss_pred ecCCce
Q psy12855 77 SSSSSF 82 (87)
Q Consensus 77 ~l~~~~ 82 (87)
.|+.+.
T Consensus 89 ~Ld~~~ 94 (118)
T cd08686 89 QLDPQS 94 (118)
T ss_pred EECHHH
Confidence 987653
No 37
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.73 E-value=2.9e-17 Score=86.21 Aligned_cols=74 Identities=30% Similarity=0.444 Sum_probs=63.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCee-ceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~-~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.+ .+++|++.+++.+|.| ||+|.|.+....+....|.++||+++..+++++||++.+++++.
T Consensus 18 ~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l 92 (110)
T cd08688 18 SDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPL 92 (110)
T ss_pred CCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHh
Confidence 45689999999832 4889999999999999 99999998776554468999999999988899999999988754
No 38
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.73 E-value=9.3e-17 Score=86.59 Aligned_cols=78 Identities=50% Similarity=0.717 Sum_probs=67.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+..||||++++.+.+....+++|++..++.+|.||++|.|.+....+....|.++||+.+..+.+++||++.+++++
T Consensus 32 ~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 32 KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 456899999999876656668899999999999999999999877655456899999999888888999999999987
No 39
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.72 E-value=3.8e-17 Score=85.91 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=62.3
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++++.+.+ ...++|++++++.+|.|||.|.|.+...++ ....|.++|||++..+.+++||++.+++.+
T Consensus 21 ~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 21 GSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 678999999985443 336899999999999999999998765433 235899999999999889999999998765
No 40
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.72 E-value=7.4e-17 Score=87.20 Aligned_cols=79 Identities=34% Similarity=0.501 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEEEeCCc--eeeeEecccccCCCCCeeceEEEEEecCCC--CcccEEEEEEEEcCCCCCCeeeEEEEEec
Q psy12855 3 DNELDPYVKVYLLYKGQ--RVAKKKTHVKKRTLNPVYNESFVFEVPADN--LDSVSLELLLLDWDRVTKNEKIFFFFFSS 78 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~--~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~--~~~~~l~v~v~~~~~~~~~~~lG~~~~~l 78 (87)
.+.+||||++++.+... ...+++|++++++.+|.|||+|.|.+...+ .....|.++|||++..+++++||++.+++
T Consensus 34 ~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 34 NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 36789999999875432 245889999999999999999999986532 23458999999999998899999999998
Q ss_pred CCc
Q psy12855 79 SSS 81 (87)
Q Consensus 79 ~~~ 81 (87)
++.
T Consensus 114 ~~l 116 (133)
T cd04009 114 NDI 116 (133)
T ss_pred HHC
Confidence 765
No 41
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.72 E-value=7.9e-17 Score=85.68 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCCCCCEEEEEEEeCC--ceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCC----CCCCeeeEEEEE
Q psy12855 3 DNELDPYVKVYLLYKG--QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR----VTKNEKIFFFFF 76 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~--~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~----~~~~~~lG~~~~ 76 (87)
.+.+||||++++.+.. .....++|++++++.+|.|+++|.|.+..+.. ..+.++|||++. .+.+++||++.+
T Consensus 18 ~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~--~~l~~~V~d~d~~~~~~~~~d~iG~~~i 95 (120)
T cd04048 18 LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEV--QKLRFEVYDVDSKSKDLSDHDFLGEAEC 95 (120)
T ss_pred CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEee--eEEEEEEEEecCCcCCCCCCcEEEEEEE
Confidence 3668999999997653 45567999999999999999999998654332 379999999987 788899999999
Q ss_pred ecCCc
Q psy12855 77 SSSSS 81 (87)
Q Consensus 77 ~l~~~ 81 (87)
++++.
T Consensus 96 ~l~~l 100 (120)
T cd04048 96 TLGEI 100 (120)
T ss_pred EHHHH
Confidence 87653
No 42
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.72 E-value=2.2e-16 Score=84.09 Aligned_cols=69 Identities=19% Similarity=0.324 Sum_probs=58.3
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccC-CCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~-~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
|.+||||++.+ .+. +++|++..+ +.||.|||+|.|.+... ...|.++|||.+.++++++||.+.+++.+
T Consensus 20 g~sDPYv~i~l--g~~---~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~ 89 (121)
T cd04016 20 TRMDPYCRIRV--GHA---VYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAFTMDERIAWTHITIPE 89 (121)
T ss_pred CCCCceEEEEE--CCE---EEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCCcCCceEEEEEEECch
Confidence 67999999999 222 668998765 79999999999998653 24799999999999999999999999864
No 43
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=1.9e-16 Score=84.90 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=58.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCC------CCeeeEEEEE
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT------KNEKIFFFFF 76 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~------~~~~lG~~~~ 76 (87)
.|.+||||.+.+ .. . +.+|+++.++.||.|||+|.|.+.... ..|.++||+++..+ .+++||++.+
T Consensus 21 ~g~sDPYv~i~~--g~-~--~~rTk~~~~~~nP~WnE~f~f~v~~~~---~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i 92 (126)
T cd08379 21 RGSTDAYCVAKY--GP-K--WVRTRTVEDSSNPRWNEQYTWPVYDPC---TVLTVGVFDNSQSHWKEAVQPDVLIGKVRI 92 (126)
T ss_pred CCCCCeeEEEEE--CC-E--EeEcCcccCCCCCcceeEEEEEecCCC---CEEEEEEEECCCccccccCCCCceEEEEEE
Confidence 467899999998 22 2 779999999999999999999986432 48999999988763 7899999999
Q ss_pred ecCC
Q psy12855 77 SSSS 80 (87)
Q Consensus 77 ~l~~ 80 (87)
+++.
T Consensus 93 ~l~~ 96 (126)
T cd08379 93 RLST 96 (126)
T ss_pred EHHH
Confidence 8654
No 44
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=3.3e-16 Score=83.77 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=62.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
.+.+||||++++. ......+|...+++.+|.|||+|.|.+.... ...|.+++||++..+.+++||++.+++++.+
T Consensus 18 ~g~~DPYv~v~~~---~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~--~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 18 NGKSDPYLKIKLG---KKKINDRDNYIPNTLNPVFGKMFELEATLPG--NSILKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCCCcEEEEEEC---CeeccceeeEEECCCCCccceEEEEEecCCC--CCEEEEEEEECCCCCCCceeEEEEEeecccc
Confidence 3678999999983 2223567778888999999999999875433 3589999999999889999999999999876
Q ss_pred e
Q psy12855 83 F 83 (87)
Q Consensus 83 ~ 83 (87)
+
T Consensus 93 ~ 93 (124)
T cd04037 93 F 93 (124)
T ss_pred c
Confidence 4
No 45
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=1.5e-16 Score=84.99 Aligned_cols=77 Identities=38% Similarity=0.608 Sum_probs=62.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEe-cCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~-~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+..||||++++.+.+. .+.+|++++++.+|.|||+|.|.. +...+....|.+++|+++..+++++||++.+++++.
T Consensus 34 ~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l 111 (125)
T cd08386 34 SGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKV 111 (125)
T ss_pred CCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccc
Confidence 35689999999865432 368999999999999999999974 333344457999999999888899999999999864
No 46
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.70 E-value=2.5e-16 Score=84.53 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++++ .+. +++|++++++.+|.|||+|.|...... ....|.|+||+++..+.+++||++.++++.
T Consensus 46 g~~DPYVkV~~--~~~---~~kT~vi~~t~nPvWNE~F~f~~~~~~-~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~ 116 (127)
T cd04032 46 TSTDGYVKVFF--GGQ---EKRTEVIWNNNNPRWNATFDFGSVELS-PGGKLRFEVWDRDNGWDDDLLGTCSVVPEA 116 (127)
T ss_pred CCCCeEEEEEE--CCc---cccCceecCCCCCcCCCEEEEecccCC-CCCEEEEEEEeCCCCCCCCeeEEEEEEecC
Confidence 56799999998 332 889999999999999999999743221 235899999999999899999999998874
No 47
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.69 E-value=4.5e-16 Score=85.67 Aligned_cols=71 Identities=39% Similarity=0.582 Sum_probs=59.6
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++.+ .+. +.+|++++++.+|.|||+|.|.+..+... ..|.+++||++..++++++|.+.+++.+
T Consensus 33 ~~~DPYV~V~~--~g~---~~kT~v~~~t~nPvWNE~f~f~v~~p~~~-~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 33 ELVDPYVEVSF--AGQ---KVKTSVKKNSYNPEWNEQIVFPEMFPPLC-ERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CCcCcEEEEEE--CCE---eeecceEcCCCCCCcceEEEEEeeCCCcC-CEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 56899999998 332 56899999999999999999996544333 4899999999999899999999998764
No 48
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.69 E-value=4.1e-16 Score=83.56 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=60.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||.+++.. ...+++|++..++.+|.|||.|.|.+... ...|.+.|||++..+++++||++.+++++
T Consensus 15 ~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 15 AGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 46799999999831 12368999999999999999999998543 35799999999998889999999998765
No 49
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=1.9e-16 Score=84.91 Aligned_cols=74 Identities=31% Similarity=0.432 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC-CCcccEEEEEEEEcCCCC-CCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWDRVT-KNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~-~~~~~~l~v~v~~~~~~~-~~~~lG~~~~~l~~ 80 (87)
++.+||||++++. +. +++|+++.++.+|.|||.|.|.+... .+....|.++||+.+..+ .+++||++.+++++
T Consensus 18 ~g~~dpyv~v~~~--~~---~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~ 92 (127)
T cd04022 18 QGSSSAYVELDFD--GQ---KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTS 92 (127)
T ss_pred CCCcCcEEEEEEC--CE---EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHH
Confidence 3668999999983 22 67899999999999999999998643 233357999999988876 78899999998865
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 93 l 93 (127)
T cd04022 93 F 93 (127)
T ss_pred c
Confidence 4
No 50
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.68 E-value=3.8e-16 Score=84.74 Aligned_cols=72 Identities=25% Similarity=0.292 Sum_probs=60.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++.+ .. .+++|++++++.||.||++|.|.+.... ...|.++|||++..+.+++||++.+++.+.
T Consensus 33 ~g~~DPYv~v~~--~~---~~~kT~vi~~t~nP~Wne~f~f~v~~~~--~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l 104 (136)
T cd08375 33 NGKSDPYCEVSM--GS---QEHKTKVVSDTLNPKWNSSMQFFVKDLE--QDVLCITVFDRDFFSPDDFLGRTEIRVADI 104 (136)
T ss_pred CCCcCcEEEEEE--CC---EeeeccccCCCCCCccCceEEEEecCcc--CCEEEEEEEECCCCCCCCeeEEEEEEHHHh
Confidence 467899999998 22 2789999999999999999999985432 358999999999888899999999988653
No 51
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.67 E-value=1.1e-15 Score=80.74 Aligned_cols=71 Identities=35% Similarity=0.359 Sum_probs=59.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++++ .+ .+++|++..++.+|.|||+|.|.+.... ...|.+.+||++..+++++||++.+++++
T Consensus 18 ~~~~dPyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 18 NGLSDPYVKFRL--GN---EKYKSKVCSKTLNPQWLEQFDLHLFDDQ--SQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCCCCcEEEEEE--CC---EeEecccccCCCCCceeEEEEEEecCCC--CCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 367899999998 22 2688999999999999999999986542 35899999999988889999999998754
No 52
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=1.3e-15 Score=81.63 Aligned_cols=73 Identities=33% Similarity=0.433 Sum_probs=61.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++ .+. +++|++.+++.+|.|||+|.|.+.........|.+.+|+++..+.+++||++.+++++
T Consensus 12 ~g~~Dpyv~v~~--~~~---~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 84 (127)
T cd08373 12 KGKGDRIAKVTF--RGV---KKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQD 84 (127)
T ss_pred CCCCCCEEEEEE--CCE---eeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhH
Confidence 367899999998 222 6799999999999999999999865433346899999999988888999999999765
No 53
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=7.1e-16 Score=82.28 Aligned_cols=77 Identities=29% Similarity=0.410 Sum_probs=63.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+.+||||++.+.+.......++|++.+++.+|.|++.|.|. +...++....+.+++|+++.. .+++||++.+++++.
T Consensus 34 ~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l 111 (123)
T cd04035 34 GLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKL 111 (123)
T ss_pred CCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccC
Confidence 56899999998765545558899999999999999999996 443344445899999999887 788999999998763
No 54
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.67 E-value=5.8e-16 Score=82.22 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=59.3
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++.+.+.. ..+++|++++++.+|.|||+|.|.+.... ...|.+++||++.. .+++||++.+++++
T Consensus 19 ~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~i~~~~--~~~l~v~v~d~d~~-~~~~iG~~~~~l~~ 90 (119)
T cd04036 19 STPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFRIQSQV--KNVLELTVMDEDYV-MDDHLGTVLFDVSK 90 (119)
T ss_pred CCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEEeCccc--CCEEEEEEEECCCC-CCcccEEEEEEHHH
Confidence 578999999984321 23789999999999999999999986542 24799999999988 78899999998865
No 55
>KOG1028|consensus
Probab=99.67 E-value=2.6e-16 Score=98.34 Aligned_cols=77 Identities=42% Similarity=0.638 Sum_probs=69.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+|.+||||++++.|+. ..+.+|++.+++.+|.|||+|.|.+...++....|.++||+++.+++++++|++.++|...
T Consensus 185 ~g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~ 261 (421)
T KOG1028|consen 185 GGTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEV 261 (421)
T ss_pred CCCCCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccc
Confidence 4568999999998875 4589999999999999999999998888888889999999999999999999999997654
No 56
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.66 E-value=1.2e-15 Score=81.32 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+|.+||||.+.+ .+. ..++|++++++.+|.|||+|.|.+... ...|.+.+|+++..++++++|.+.+++++.
T Consensus 19 ~g~sDpYv~v~l--~~~--~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l 90 (121)
T cd08401 19 NKMRDCYCTVNL--DQE--EVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDL 90 (121)
T ss_pred CCCcCcEEEEEE--CCc--cEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHc
Confidence 357899999988 222 257899999999999999999998753 258999999999998999999999986543
No 57
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=1.5e-15 Score=80.99 Aligned_cols=72 Identities=33% Similarity=0.554 Sum_probs=60.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||.+++ .+. +.+|++.+++.+|.|+|+|.|.+.... ...|.|++|+++..+.+++||++.+++++.
T Consensus 18 ~~~~DPyv~v~~--~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l 89 (123)
T cd04025 18 NGTSDPFVRVFY--NGQ---TLETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLVSKNDFLGKVVFSIQTL 89 (123)
T ss_pred CCCcCceEEEEE--CCE---EEeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCCCCCcEeEEEEEEHHHc
Confidence 356899999998 222 678999999999999999999986643 358999999999888899999999997654
No 58
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.66 E-value=1.5e-15 Score=80.81 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=59.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++.+ .+ ...++|++..++.+|.|||.|.|.+... ...|.+++||++..+++++||++.+++++
T Consensus 18 ~g~~Dpyv~v~~--~~--~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~D~d~~~~~~~iG~~~~~l~~ 88 (121)
T cd04042 18 GGTSDPYVKFKY--GG--KTVYKSKTIYKNLNPVWDEKFTLPIEDV---TQPLYIKVFDYDRGLTDDFMGSAFVDLST 88 (121)
T ss_pred CCCCCCeEEEEE--CC--EEEEEeeeccCCCCCccceeEEEEecCC---CCeEEEEEEeCCCCCCCcceEEEEEEHHH
Confidence 467899999997 22 2378999999999999999999998543 25899999999999889999999998865
No 59
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.66 E-value=1.8e-15 Score=82.23 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=63.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC-------------CCcccEEEEEEEEcCCCCCCe
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-------------NLDSVSLELLLLDWDRVTKNE 69 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~-------------~~~~~~l~v~v~~~~~~~~~~ 69 (87)
.+.+||||++++... ....+++|+++.++.+|.|+++|.|.+... ++....+.+.+|+++..+.++
T Consensus 16 ~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~ 94 (137)
T cd08675 16 NGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDD 94 (137)
T ss_pred CCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCc
Confidence 467899999998632 223478999999999999999999997654 234568999999999888899
Q ss_pred eeEEEEEecCCc
Q psy12855 70 KIFFFFFSSSSS 81 (87)
Q Consensus 70 ~lG~~~~~l~~~ 81 (87)
+||++.+++++.
T Consensus 95 ~IG~~~i~l~~l 106 (137)
T cd08675 95 FLGEVRIPLQGL 106 (137)
T ss_pred EEEEEEEehhhc
Confidence 999999998763
No 60
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.66 E-value=1.1e-15 Score=82.33 Aligned_cols=78 Identities=36% Similarity=0.577 Sum_probs=64.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+..||||.+.+.+.+....+++|++.+++.+|.|+++|.|.+...+. ...|.+.+|+++..+.+++||++.+++++.
T Consensus 31 ~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l 108 (131)
T cd04026 31 NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADK-DRRLSIEVWDWDRTTRNDFMGSLSFGVSEL 108 (131)
T ss_pred CCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhc-CCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence 356899999998754444558899999999999999999999865433 258999999998888889999999997664
No 61
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.65 E-value=3.8e-15 Score=79.71 Aligned_cols=74 Identities=26% Similarity=0.268 Sum_probs=60.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||.+..... ....++|++.+++.+|.|||+|.|.+.... ...|.++||+++..++++++|++.+++++
T Consensus 19 ~~~~Dpyv~v~~~~~--~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~--~~~L~i~v~d~d~~~~~~~iG~~~i~l~~ 92 (126)
T cd04043 19 NGLSDPYVTLVDTNG--KRRIAKTRTIYDTLNPRWDEEFELEVPAGE--PLWISATVWDRSFVGKHDLCGRASLKLDP 92 (126)
T ss_pred CCCCCceEEEEECCC--CeeeecccEecCCCCCcccceEEEEcCCCC--CCEEEEEEEECCCCCCCceEEEEEEecCH
Confidence 467899999986322 234689999999999999999999986642 35899999999988888999999999875
No 62
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.65 E-value=7e-16 Score=81.04 Aligned_cols=74 Identities=32% Similarity=0.391 Sum_probs=61.1
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC--CCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD--NLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~--~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++.+. +. +++|++++++.+|.|+|+|.|.+... ++....|.++||+++..+++++||++.+++++
T Consensus 18 ~~~~dpyv~v~~~--~~---~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 18 GGNIDPVVKVEVG--GQ---KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCCCEEEEEEC--CE---eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 5678999999983 22 67899999999999999999986432 23345899999999988889999999999875
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 93 v 93 (111)
T cd04011 93 V 93 (111)
T ss_pred c
Confidence 4
No 63
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=2.8e-15 Score=80.85 Aligned_cols=76 Identities=28% Similarity=0.370 Sum_probs=61.7
Q ss_pred CCCCCCEEEEEEEeC--CceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYK--GQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~--~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++... +....+.+|++.+++.+|.||++|.|.+... ...|.+++||++..+++++||++.+++++
T Consensus 18 ~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 18 FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 357899999998643 2223367899999999999999999998653 24799999999998889999999998765
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 95 l 95 (133)
T cd04033 95 L 95 (133)
T ss_pred C
Confidence 3
No 64
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.63 E-value=4e-15 Score=81.51 Aligned_cols=69 Identities=33% Similarity=0.471 Sum_probs=59.5
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+ .+ . +++|++.+++.+|.|||.|.|.+... ...+.+++||++.++.+++||++.+++.+
T Consensus 20 ~~sDPYV~v~~--g~-~--~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~ 88 (145)
T cd04038 20 TSSDPYVVLTL--GN-Q--KVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEP 88 (145)
T ss_pred CCcCcEEEEEE--CC-E--EEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHH
Confidence 56899999998 22 2 78999999999999999999998654 35899999999999899999999998765
No 65
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.63 E-value=3e-15 Score=79.83 Aligned_cols=69 Identities=30% Similarity=0.336 Sum_probs=57.7
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+||||++.+. . .+.+|++++++.||.|||+|.|.+... ....|.++||+++.. .+++||++.+++++.
T Consensus 16 ~~Dpyv~v~l~--~---~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~l 84 (121)
T cd08378 16 SNDPVVEVKLG--N---YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDKA-KDDFLGGVCFDLSEV 84 (121)
T ss_pred cCCCEEEEEEC--C---ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCCC-cCceeeeEEEEhHhC
Confidence 57999999983 2 278999999999999999999997542 235899999999876 678999999998765
No 66
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.62 E-value=6.4e-15 Score=81.12 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=59.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccC-CCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~-~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+|.+||||++.+. + .+++|++..+ +.+|.|||.|.|.+.... ...+.+.+|+++..+.+++||++.+++++.
T Consensus 18 ~g~sDPYV~v~l~--~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l 90 (150)
T cd04019 18 NRVPEVFVKAQLG--N---QVLRTRPSQTRNGNPSWNEELMFVAAEPF--EDHLILSVEDRVGPNKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCCCeEEEEEEC--C---EEeeeEeccCCCCCCcccCcEEEEecCcc--CCeEEEEEEEecCCCCCCeEEEEEEEHHHC
Confidence 4678999999983 2 2778888765 699999999999985432 248999999998888889999999998864
No 67
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.62 E-value=7.1e-15 Score=76.55 Aligned_cols=68 Identities=29% Similarity=0.397 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++.+ .+ ..++|++.+++.+|.|||.|.|.+..+.. ..|.++||+.+. +++||++.+++.+
T Consensus 18 ~~~~dpyv~v~~--~~---~~~kT~v~~~t~nP~Wne~f~f~v~~~~~--~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 18 TKEPSPYVELTV--GK---TTQKSKVKERTNNPVWEEGFTFLVRNPEN--QELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCCCcEEEEEE--CC---EEEeCccccCCCCCcccceEEEEeCCCCC--CEEEEEEEECCC---CCccEEEEEEHHH
Confidence 467899999998 22 37889999999999999999999876433 479999999875 6799999998764
No 68
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.62 E-value=1.1e-14 Score=77.82 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=54.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+..+|||++.+ .+. +.+|+..+++ +|.|||.|.|.+... . ..|.+.||+++.+ .++++|++.++|++.
T Consensus 18 ~~~dPYV~Ik~--g~~---k~kT~v~~~~-nP~WnE~F~F~~~~~--~-~~L~v~V~dkd~~-~DD~lG~v~i~L~~v 85 (127)
T cd08394 18 DKFNTYVTLKV--QNV---KSTTIAVRGS-QPCWEQDFMFEINRL--D-LGLVIELWNKGLI-WDTLVGTVWIPLSTI 85 (127)
T ss_pred CCCCCeEEEEE--CCE---EeEeeECCCC-CCceeeEEEEEEcCC--C-CEEEEEEEeCCCc-CCCceEEEEEEhHHc
Confidence 44689999998 322 7788887774 999999999998543 2 4599999998866 788999999999864
No 69
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.61 E-value=6.2e-15 Score=78.08 Aligned_cols=69 Identities=23% Similarity=0.263 Sum_probs=56.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEeccccc-CCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~-~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++.+.. .+++|++.. .+.+|.|||.|.|.+.... ...|.++|||++..+ +++||++.+++++
T Consensus 20 ~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~v~~~~--~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 20 DKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFEITEDK--KPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCCCceEEEEECC-----CccccccccCCCCCCccCceEEEEecCCC--CCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 5689999999832 267888764 5789999999999987642 348999999988876 8899999998875
No 70
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.61 E-value=4.4e-15 Score=77.80 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=59.9
Q ss_pred CCCCCEEEEEEEeCC-ceeeeEecccccCCCCCeeceEEEEEecC---CCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 4 NELDPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPA---DNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~-~~~~~~~t~~~~~~~~P~~~~~~~f~~~~---~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+.+|||+++++.+.. .....++|++++++.+|.|+ .|.+.... .+. ...|.++|||++..+++++||++.++++
T Consensus 19 ~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~-~~~l~~~V~d~d~~~~d~~iG~~~~~l~ 96 (110)
T cd04047 19 GKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDY-DRPIKIEVYDYDSSGKHDLIGEFETTLD 96 (110)
T ss_pred CCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCc-CCEEEEEEEEeCCCCCCcEEEEEEEEHH
Confidence 568999999986543 34557999999999999999 56666321 111 3589999999999989999999999886
Q ss_pred Cc
Q psy12855 80 SS 81 (87)
Q Consensus 80 ~~ 81 (87)
+.
T Consensus 97 ~l 98 (110)
T cd04047 97 EL 98 (110)
T ss_pred HH
Confidence 54
No 71
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.61 E-value=4e-15 Score=79.69 Aligned_cols=72 Identities=25% Similarity=0.305 Sum_probs=60.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||.+.+ .. .+++|++++++.+|.|+++|.|.+... ....|.+++||++..+.+++||++.+++++.
T Consensus 21 ~~~~dPyv~v~~--~~---~~~kT~~~~~t~~P~Wne~f~~~~~~~--~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~ 92 (128)
T cd04024 21 KGKSDPYAILSV--GA---QRFKTQTIPNTLNPKWNYWCEFPIFSA--QNQLLKLILWDKDRFAGKDYLGEFDIALEEV 92 (128)
T ss_pred CCCcCCeEEEEE--CC---EEEecceecCCcCCccCCcEEEEecCC--CCCEEEEEEEECCCCCCCCcceEEEEEHHHh
Confidence 467899999987 22 267999999999999999999998652 2358999999999888889999999987653
No 72
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.61 E-value=1e-14 Score=79.22 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=59.3
Q ss_pred CCCCCEEEEEEEeCCce--------eeeEecccccCCCCCee-ceEEEEEecCCCCcccEEEEEEEEcCCCCC---Ceee
Q psy12855 4 NELDPYVKVYLLYKGQR--------VAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDRVTK---NEKI 71 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~--------~~~~~t~~~~~~~~P~~-~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~---~~~l 71 (87)
|.+|||+++++.+.... ..+++|++++++.||.| ||.|.|.+... ..|.++|||++..+. +++|
T Consensus 19 g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~~----~~L~v~V~D~~~~~~~~~~d~l 94 (137)
T cd08691 19 FNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLPT----DVLEIEVKDKFAKSRPIIRRFL 94 (137)
T ss_pred CCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCCC----CEEEEEEEecCCCCCccCCceE
Confidence 67899999999754432 23789999999999999 99999998543 479999999765433 6899
Q ss_pred EEEEEecCCc
Q psy12855 72 FFFFFSSSSS 81 (87)
Q Consensus 72 G~~~~~l~~~ 81 (87)
|++.+++.+.
T Consensus 95 G~~~i~l~~l 104 (137)
T cd08691 95 GKLSIPVQRL 104 (137)
T ss_pred EEEEEEHHHh
Confidence 9999987653
No 73
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.61 E-value=1e-14 Score=76.66 Aligned_cols=72 Identities=28% Similarity=0.344 Sum_probs=58.8
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+|.+||||.+.+ .+. ..++|++++++.+|.|||.|.|.+... ....|.|.+|+.+.. .+++||.+.++|++
T Consensus 9 ~~G~~dPYv~v~v--~~~--~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 9 KTGLLSPYAELYL--NGK--LVYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred cCCCCCceEEEEE--CCE--EEEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 3577999999998 222 257888888899999999999998643 235799999999988 88999999998764
No 74
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.61 E-value=1.8e-14 Score=77.20 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.|.+||||++.. .+. .++|++.+++.+|.|||.|.|.+... ...|.++|||++..+ +++||++.+++++
T Consensus 21 ~g~~dPyv~v~~--~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~~~~-d~~lG~~~~~l~~ 89 (126)
T cd04046 21 GGGADPYVIIKC--EGE---SVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSNLLC-DEFLGQATLSADP 89 (126)
T ss_pred CCCcCccEEEEE--CCE---EEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECCCCC-CCceEEEEEeccc
Confidence 367899999987 232 67999999999999999999987543 358999999988764 7899999999875
No 75
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.60 E-value=1.5e-14 Score=77.03 Aligned_cols=70 Identities=21% Similarity=0.376 Sum_probs=58.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+|.+||||.+.+ .+. ...+|++++++.+|.|||.|.|.+... ...|.+.+|+++..++++++|++.++++
T Consensus 18 ~g~~DPYv~v~~--~~~--~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 18 TGSSDPYCIVKV--DNE--VIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCCCCceEEEEE--CCE--eeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 467899999988 322 256899999999999999999998543 2489999999999989999999999864
No 76
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.60 E-value=8.9e-15 Score=78.87 Aligned_cols=75 Identities=27% Similarity=0.221 Sum_probs=64.0
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCC--CeeceEEEEEecC---------------------CCCcccEEEEEEEE
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLN--PVYNESFVFEVPA---------------------DNLDSVSLELLLLD 61 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~--P~~~~~~~f~~~~---------------------~~~~~~~l~v~v~~ 61 (87)
.+||||+..+.+. ...+++|.++.++.+ |.||+.|.|++.. +.+....|.+++||
T Consensus 24 ~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 24 MSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred ccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 4899999999765 345899999999988 9999999998766 34456789999999
Q ss_pred cCCCCCCeeeEEEEEecCCc
Q psy12855 62 WDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 62 ~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.++.++++|.++++++..
T Consensus 102 ~D~~s~dd~iG~~~l~l~~l 121 (133)
T cd08374 102 NDKFSPDDFLGSLELDLSIL 121 (133)
T ss_pred CcccCCCCcceEEEEEhhhc
Confidence 99999999999999988743
No 77
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.60 E-value=1e-14 Score=77.35 Aligned_cols=69 Identities=30% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+++. + ..++|++.+++.+|.|+|.|.|.+.... ...|.+++||++.. .+++||.+.+++++
T Consensus 26 g~~dPyv~v~~~--~---~~~kT~~~~~t~~P~W~e~f~~~v~~~~--~~~l~i~v~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 26 GKSDPYVIVRVG--A---QTFKSKVIKENLNPKWNEVYEAVVDEVP--GQELEIELFDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred CCcCCEEEEEEC--C---EeEEccccCCCCCCcccceEEEEeCCCC--CCEEEEEEEecCCC-CCCcEEEEEEEHHH
Confidence 578999999983 2 3789999999999999999999886432 35899999999887 78899999998754
No 78
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.59 E-value=1.8e-14 Score=76.92 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=58.6
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCC--CeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK--NEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~--~~~lG~~~~~l~~~ 81 (87)
+.+|||+++++. + ...++|++.+++.+|.|||.|.|.+.. ...|.++||+++..+. +++||++.+++++.
T Consensus 19 ~~~dpyv~v~~~--~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l 90 (123)
T cd08382 19 RLPDPFAVITVD--G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAV 90 (123)
T ss_pred CCCCcEEEEEEC--C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHc
Confidence 568999999983 2 237899999999999999999999865 2589999999888765 47999999988764
No 79
>KOG1028|consensus
Probab=99.59 E-value=8.9e-15 Score=91.52 Aligned_cols=78 Identities=51% Similarity=0.723 Sum_probs=71.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++..||||++++...++...+++|.+++++.||.|||+|.|.++.+.+....+.++||+++.++.+++||++.+....
T Consensus 316 ~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 316 GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred CCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC
Confidence 456789999999987778889999999999999999999999998888878899999999999999999999888764
No 80
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.59 E-value=1.2e-14 Score=76.97 Aligned_cols=70 Identities=27% Similarity=0.333 Sum_probs=58.1
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++. +. .++|++.+++.+|.|+++|.|.+... ...+.+++|+++..+.+++||++.+++.+
T Consensus 19 ~~~~dPyv~v~~~--~~---~~~T~~~~~t~nP~W~e~f~~~~~~~---~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 19 GGKSDPFCVLELV--NA---RLQTHTIYKTLNPEWNKIFTFPIKDI---HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred CCCCCcEEEEEEC--CE---eeecceecCCcCCccCcEEEEEecCc---CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 3568999999983 22 57999999999999999999998542 25899999999988888999999998755
No 81
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=2e-14 Score=76.50 Aligned_cols=71 Identities=28% Similarity=0.478 Sum_probs=59.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++ .+. ..++|++..++.+|.||+.|.|.+... ...|.+++|+++..+.+++||++.+++.+
T Consensus 19 ~g~~DPYv~v~~--~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~ 89 (120)
T cd04045 19 VGKIDPYVRVLV--NGI--VKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSD 89 (120)
T ss_pred CCCcCCEEEEEE--CCE--EeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHH
Confidence 367899999998 222 368888889999999999999987654 24899999999998889999999998764
No 82
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.58 E-value=3.9e-14 Score=76.42 Aligned_cols=69 Identities=29% Similarity=0.364 Sum_probs=57.6
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+..||||.+.+ .+. ...+|++..++.+|.|||+|.|.+.. ...+.+.+|+++..+.++++|++.+++++
T Consensus 33 g~~dpyv~v~~--~~~--~~~kT~~~~~t~~P~Wne~f~~~v~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 33 QLLDPYVSIDV--DDT--HIGKTSTKPKTNSPVWNEEFTTEVHN----GRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred cCcCcEEEEEE--CCE--EEeEEeEcCCCCCCCcceeEEEEcCC----CCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 57899999998 322 24688888889999999999999863 35899999998888888999999999864
No 83
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.58 E-value=2.7e-14 Score=76.07 Aligned_cols=71 Identities=32% Similarity=0.380 Sum_probs=59.4
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+... ...++|++..++.+|.|||.|.|.+... ...|.+++|+++..+.+++||.+.+++.+
T Consensus 22 ~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~v~~~---~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 22 GTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYILVNSL---TEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEEeCCC---CCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 45799999998431 2378999999999999999999998632 35899999999988888999999998765
No 84
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.58 E-value=5.7e-14 Score=75.33 Aligned_cols=70 Identities=24% Similarity=0.362 Sum_probs=55.5
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+ .+. ...+|++. ++.+|.|||+|.|.....+.. .+.+.+|+++..+++++||++.+++++
T Consensus 20 ~~~DPYv~v~l--~~~--~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~--~l~v~v~d~~~~~~d~~iG~v~i~l~~ 89 (126)
T cd08400 20 HVPHPYCVISL--NEV--KVARTKVR-EGPNPVWSEEFVFDDLPPDVN--SFTISLSNKAKRSKDSEIAEVTVQLSK 89 (126)
T ss_pred CCCCeeEEEEE--CCE--eEEEeecC-CCCCCccCCEEEEecCCCCcC--EEEEEEEECCCCCCCCeEEEEEEEHhH
Confidence 46899999998 222 24677764 579999999999986544333 688999999998899999999999764
No 85
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.57 E-value=3e-14 Score=76.29 Aligned_cols=69 Identities=32% Similarity=0.380 Sum_probs=58.3
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++++. +. ..++|++..++.+|.|++.|.|.+... ..|.+.||+++..+.++++|++.+++++
T Consensus 20 ~~~dPyv~v~~~--~~--~~~kT~v~~~t~~P~Wne~f~~~~~~~----~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 88 (125)
T cd04021 20 FKPDPYVEVTVD--GQ--PPKKTEVSKKTSNPKWNEHFTVLVTPQ----STLEFKVWSHHTLKADVLLGEASLDLSD 88 (125)
T ss_pred CCCCeEEEEEEC--Cc--ccEEeeeeCCCCCCccccEEEEEeCCC----CEEEEEEEeCCCCCCCcEEEEEEEEHHH
Confidence 568999999982 22 367899999999999999999998542 4899999999998889999999998754
No 86
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.56 E-value=6.4e-14 Score=77.76 Aligned_cols=70 Identities=29% Similarity=0.335 Sum_probs=56.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.|.+||||.+.+ .+. ...+|++..++.||.|||+|.|.+... ...|.+.+||.+..+ +++||.+.+++++
T Consensus 55 ~g~sDPYv~V~l--~~~--~~~rT~v~~~~~nP~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~ 124 (158)
T cd04015 55 KITSDPYATVDL--AGA--RVARTRVIENSENPVWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVED 124 (158)
T ss_pred CCCcCeEEEEEE--CCe--EeeEEEEeCCCCCCccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHH
Confidence 466899999998 222 256999999999999999999987543 247999999988875 5799999998765
No 87
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.56 E-value=3.4e-14 Score=74.87 Aligned_cols=72 Identities=39% Similarity=0.592 Sum_probs=59.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++.+. + ...++|+.+.++.+|.||++|.|.+.... ...+.+.+|+++..+++++||++.+++.+
T Consensus 17 ~~~~dpyv~v~~~--~--~~~~~T~v~~~~~~P~Wne~f~~~~~~~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 17 NGKSDPFVKFYLN--G--EKVFKTKTIKKTLNPVWNESFEVPVPSRV--RAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCCCCeEEEEEC--C--CcceeeceecCCCCCcccccEEEEeccCC--CCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 3568999999983 2 23578999999999999999999986542 35899999999988889999999998765
No 88
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.56 E-value=3.9e-14 Score=78.14 Aligned_cols=73 Identities=30% Similarity=0.377 Sum_probs=57.8
Q ss_pred CCCCCCEEEEEEEeCCce------------------------eeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEE
Q psy12855 3 DNELDPYVKVYLLYKGQR------------------------VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELL 58 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~------------------------~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~ 58 (87)
+|.+||||++.+.+..+. ...++|++..++.+|.||++|.|.+... ....|.++
T Consensus 46 ~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~ 123 (153)
T cd08676 46 NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLD 123 (153)
T ss_pred CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccccEEEEEeccC--CCCEEEEE
Confidence 467999999998543211 1247899999999999999999998543 23589999
Q ss_pred EEEcCCCCCCeeeEEEEEecCCc
Q psy12855 59 LLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 59 v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
|||++ +++||++.+++++.
T Consensus 124 V~D~d----d~~IG~v~i~l~~l 142 (153)
T cd08676 124 IWDHD----DDFLGCVNIPLKDL 142 (153)
T ss_pred EEecC----CCeEEEEEEEHHHh
Confidence 99987 78999999988664
No 89
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.56 E-value=5.9e-14 Score=75.10 Aligned_cols=76 Identities=32% Similarity=0.358 Sum_probs=61.0
Q ss_pred CCCCCCEEEEEEEeCCc-eeeeEecccccCCC-CCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQ-RVAKKKTHVKKRTL-NPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~-~~~~~~t~~~~~~~-~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+..||||.+++..... ...+++|+...++. +|.|+|+|.|.+...+. ..|.++||+.+.. +++++|++.+++++
T Consensus 22 ~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~--~~l~~~V~d~~~~-~~~~iG~~~~~l~~ 98 (128)
T cd00275 22 GSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPEL--AFLRFVVYDEDSG-DDDFLGQACLPLDS 98 (128)
T ss_pred CCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCe--EEEEEEEEeCCCC-CCcEeEEEEEEhHH
Confidence 46789999999975543 34578999877765 99999999999865442 3789999998887 88899999999875
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 99 l 99 (128)
T cd00275 99 L 99 (128)
T ss_pred h
Confidence 4
No 90
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.53 E-value=1.1e-13 Score=74.33 Aligned_cols=69 Identities=29% Similarity=0.386 Sum_probs=55.6
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC-----------CCCeeeE
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-----------TKNEKIF 72 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~-----------~~~~~lG 72 (87)
+.+||||.+++. . ..++|+...++.+|.|+|+|.|.+... ...|.+.+||++.. +.+++||
T Consensus 20 g~~DPyv~v~~~--~---~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 20 GTSDPYVTVQVG--K---TKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred CCcCcEEEEEEC--C---EeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 568999999982 2 267899999999999999999987533 24799999998752 4678999
Q ss_pred EEEEecCC
Q psy12855 73 FFFFSSSS 80 (87)
Q Consensus 73 ~~~~~l~~ 80 (87)
++.+++.+
T Consensus 92 ~~~i~l~~ 99 (127)
T cd04027 92 QTIIEVRT 99 (127)
T ss_pred EEEEEhHH
Confidence 99998764
No 91
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.52 E-value=1.9e-13 Score=74.08 Aligned_cols=70 Identities=26% Similarity=0.384 Sum_probs=55.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC-----CC--cccEEEEEEEEcCCCCCCeeeEEEE
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-----NL--DSVSLELLLLDWDRVTKNEKIFFFF 75 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~-----~~--~~~~l~v~v~~~~~~~~~~~lG~~~ 75 (87)
.+.+||||++.+. +. +++|++.+++.||.|||.|.|..... .. ....+.++|||++..+++++||++.
T Consensus 19 ~g~~dpyv~v~~~--~~---~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~ 93 (135)
T cd04017 19 SGLSDPFARVSFL--NQ---SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSV 93 (135)
T ss_pred CCCCCCEEEEEEC--Ce---eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEE
Confidence 4678999999983 22 77899999999999999999974221 11 1247899999999988899999998
Q ss_pred Ee
Q psy12855 76 FS 77 (87)
Q Consensus 76 ~~ 77 (87)
+.
T Consensus 94 i~ 95 (135)
T cd04017 94 AK 95 (135)
T ss_pred ee
Confidence 63
No 92
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.51 E-value=8.3e-14 Score=74.43 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCCCEEEEEEEeCCceeeeEeccccc-CCCCCeeceEEEEEecCCCC--cccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNL--DSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~-~~~~P~~~~~~~f~~~~~~~--~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+..||||.+++.. ..+++|++.. ++.+|.|||.|.|.+....+ ....|.+.+|+++..+.+++||++.+++.+
T Consensus 19 ~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 19 GKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKD 94 (125)
T ss_pred cCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHH
Confidence 5689999999843 1267888864 58999999999999866532 235899999999988888999999998876
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 95 l 95 (125)
T cd04051 95 L 95 (125)
T ss_pred h
Confidence 4
No 93
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.51 E-value=2.1e-13 Score=72.85 Aligned_cols=73 Identities=27% Similarity=0.374 Sum_probs=58.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEeccccc-CCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~-~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+..||||.+.+ .+. .++|++.. ++.+|.||+.|.|.+..... ....|.+.||+.+..+.+++||++.+++.+.
T Consensus 20 ~~~dpyv~v~~--~~~---~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l 94 (124)
T cd04049 20 GKIDPYVIIQC--RTQ---ERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94 (124)
T ss_pred CCcCceEEEEE--CCE---eeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHh
Confidence 56899999997 222 56777766 48999999999999876532 2357999999999888889999999998764
No 94
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.50 E-value=3.4e-13 Score=67.07 Aligned_cols=69 Identities=41% Similarity=0.489 Sum_probs=58.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEE
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFF 75 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~ 75 (87)
.+..+||+.+.+..... ..++|+...++.+|.|+++|.|.+...... .|.|.||+++..+++++||++.
T Consensus 17 ~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 17 NGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp TSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSSSEEEEEEEE
T ss_pred CCcccccceeecceeee--eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCCCCCEEEEEC
Confidence 34678999999865432 479999999999999999999997766655 5999999999998899999873
No 95
>PLN02223 phosphoinositide phospholipase C
Probab=99.47 E-value=4.7e-13 Score=85.19 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=62.2
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
..||||++.+.+-.....+++|.+..++.+|.|||+|.|.+..+++. .|.|.|+|++....++|+|+..+++.+.
T Consensus 434 ~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELA--lLrf~V~D~D~~~~ddfiGQ~~LPv~~L 508 (537)
T PLN02223 434 KPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLA--LISFEVYDYEVSTADAFCGQTCLPVSEL 508 (537)
T ss_pred CCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCce--EEEEEEEecCCCCCCcEEEEEecchHHh
Confidence 46899999997533344466787788899999999999998777765 8999999999888899999999988754
No 96
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.46 E-value=1.9e-12 Score=68.29 Aligned_cols=71 Identities=27% Similarity=0.375 Sum_probs=54.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+.+||||.+++ .+ ...++|++..+ .+|.|||+|.|.+...++....+.+.+|+.+....+..+|.+.+...
T Consensus 16 ~~~dpyv~v~~--~~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~ 86 (117)
T cd08383 16 GTRDPYCTVSL--DQ--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKL 86 (117)
T ss_pred CCCCceEEEEE--CC--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCc
Confidence 56899999998 22 22578888888 99999999999988765555678899998876666677787766543
No 97
>PLN03008 Phospholipase D delta
Probab=99.39 E-value=2.4e-12 Score=85.26 Aligned_cols=69 Identities=23% Similarity=0.259 Sum_probs=58.0
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+ .+ .++.+|++++++.||.|||+|.|.+... ...|.|+|||++.++ +++||++.+++++
T Consensus 75 ~tSDPYV~I~L--g~--~rv~RTrVi~n~~NPvWNE~F~f~vah~---~s~L~f~VkD~D~~g-aD~IG~a~IPL~~ 143 (868)
T PLN03008 75 ITSDPYVTVVV--PQ--ATLARTRVLKNSQEPLWDEKFNISIAHP---FAYLEFQVKDDDVFG-AQIIGTAKIPVRD 143 (868)
T ss_pred CCCCceEEEEE--CC--cceeeEEeCCCCCCCCcceeEEEEecCC---CceEEEEEEcCCccC-CceeEEEEEEHHH
Confidence 46799999998 22 2366999999999999999999998764 258999999999987 4799999998765
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=99.37 E-value=3.9e-12 Score=82.24 Aligned_cols=74 Identities=26% Similarity=0.310 Sum_probs=61.8
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.||||++.+.+-.....+.+|+++.++.+|.|+++|.|.+..+++. .+.|.|||++..+.++++|++.+++++.
T Consensus 497 ~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELA--llrf~V~D~D~~~~ddfiGq~~lPv~~L 570 (599)
T PLN02952 497 PDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELA--LLRIEVREYDMSEKDDFGGQTCLPVSEL 570 (599)
T ss_pred CCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCcc--EEEEEEEecCCCCCCCeEEEEEcchhHh
Confidence 4889999987433344577899999999999999999998777665 7899999999888899999999988754
No 99
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.37 E-value=4.3e-12 Score=81.97 Aligned_cols=74 Identities=20% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.||||++.+.+-.....+++|++..++.+|.|+++|.|.+..+++. .|+|.|++++....++|+|+..+++.+.
T Consensus 496 ~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELA--llRf~V~d~d~~~~ddfiGQ~~lPv~~L 569 (598)
T PLN02230 496 PDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELA--LLRVEVHEHDINEKDDFGGQTCLPVSEI 569 (598)
T ss_pred CCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCcee--EEEEEEEECCCCCCCCEEEEEEcchHHh
Confidence 6899999987533344467888888899999999999998777765 8999999999888899999999988754
No 100
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.36 E-value=6.4e-12 Score=81.03 Aligned_cols=75 Identities=20% Similarity=0.166 Sum_probs=62.2
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
..||||++.+.+-.....+.+|+++.++.+|.|+++|.|.+..+++. .++|.|++++....++++|+..+++.+.
T Consensus 478 ~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLA--llRf~V~d~D~~~~ddfigq~~lPv~~L 552 (581)
T PLN02222 478 PPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELA--LLRLEVHEYDMSEKDDFGGQTCLPVWEL 552 (581)
T ss_pred CCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCcee--EEEEEEEECCCCCCCcEEEEEEcchhhh
Confidence 35889999986433334567899999989999999999998777765 8999999998888889999999998764
No 101
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.34 E-value=1.9e-11 Score=62.09 Aligned_cols=73 Identities=44% Similarity=0.539 Sum_probs=59.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+..+|||.+.+.+.+ ....+|+....+.+|.|++.|.|.+.... ...|.+++|+....+.+.++|.+.+++.+
T Consensus 19 ~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~ 91 (101)
T smart00239 19 GKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSD 91 (101)
T ss_pred CCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHH
Confidence 357899999986442 33688888888889999999999986654 35899999998887778899999998654
No 102
>KOG0169|consensus
Probab=99.33 E-value=3.1e-12 Score=83.43 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=64.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEecc-cccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTH-VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~-~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
...+|||.+.+.+-.....+.+|+ +..++.+|.|+|+|.|.+..+++. -|+|.|+|++..++|+|+|+.++++++.
T Consensus 639 ~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L 715 (746)
T KOG0169|consen 639 EISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSEL 715 (746)
T ss_pred ccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecccee--EEEEEEEecCCCCcccccceeeccHHHh
Confidence 457898888875433455688999 577889999999999999888877 8999999999999999999999998764
No 103
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.28 E-value=9.9e-12 Score=88.20 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=57.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+.. + .+.||++++++.||.|||.|.|.+..+... ..+.++|||++.++++ .+|.+.+++.+
T Consensus 1997 ~~sdPyv~l~~g~--~--~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~-~~l~iev~d~d~f~kd-~~G~~~i~l~~ 2067 (2102)
T PLN03200 1997 GNTNAFCKLTLGN--G--PPRQTKVVSHSSSPEWKEGFTWAFDSPPKG-QKLHISCKSKNTFGKS-SLGKVTIQIDR 2067 (2102)
T ss_pred CCCCCeEEEEECC--C--CcccccccCCCCCCCcccceeeeecCCCCC-CceEEEEEecCccCCC-CCceEEEEHHH
Confidence 6689999999831 1 166999999999999999999887655332 4799999999998665 89999998754
No 104
>KOG1328|consensus
Probab=99.27 E-value=2.9e-12 Score=83.71 Aligned_cols=79 Identities=32% Similarity=0.461 Sum_probs=67.1
Q ss_pred CCCCCCCEEEEEEEeCCce--eeeEecccccCCCCCeeceEEEEEecCCCCc--ccEEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 2 KDNELDPYVKVYLLYKGQR--VAKKKTHVKKRTLNPVYNESFVFEVPADNLD--SVSLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~--~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~--~~~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
+||.+||||.+.+.|.... +..++|+++.+++||.|+|+|.|.++.+... ...+.++|-|++-...++|-|++.+.
T Consensus 964 ~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~ 1043 (1103)
T KOG1328|consen 964 SNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLE 1043 (1103)
T ss_pred CCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHh
Confidence 5899999999999765432 4579999999999999999999999876443 46788999999999999999999888
Q ss_pred cCC
Q psy12855 78 SSS 80 (87)
Q Consensus 78 l~~ 80 (87)
|++
T Consensus 1044 Lg~ 1046 (1103)
T KOG1328|consen 1044 LGD 1046 (1103)
T ss_pred hCC
Confidence 765
No 105
>PLN02228 Phosphoinositide phospholipase C
Probab=99.24 E-value=6.3e-11 Score=76.36 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=62.0
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCee-ceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~-~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.||||++.+.+......+++|++..++.+|.| +++|.|.+..+++. .|+|.|+|++..+.++++|++.+++++.
T Consensus 458 ~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA--~lRf~V~D~d~~~~d~figq~~lPv~~L 532 (567)
T PLN02228 458 PDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELA--LLWFKVQDYDNDTQNDFAGQTCLPLPEL 532 (567)
T ss_pred CCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCcee--EEEEEEEeCCCCCCCCEEEEEEcchhHh
Confidence 68899999875433445778998888899999 99999998777765 8999999998888889999999998754
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.16 E-value=6.2e-10 Score=56.18 Aligned_cols=72 Identities=40% Similarity=0.431 Sum_probs=58.6
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
...+||+.+.+.. ....+|.....+.+|.|++.|.|.+... ....+.+.+|+......+.++|.+.+++.+.
T Consensus 18 ~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l 89 (102)
T cd00030 18 GKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSEL 89 (102)
T ss_pred CCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHh
Confidence 4688999999843 2377888888889999999999998763 2358999999988877788999999987653
No 107
>KOG0905|consensus
Probab=99.15 E-value=2.6e-11 Score=82.40 Aligned_cols=77 Identities=30% Similarity=0.454 Sum_probs=69.1
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
..+||||++|+.|+.++..++||++++++.+|.|||.+.+. .+.+.+..+.|+++||..+....+.++|.+.++|.+
T Consensus 1543 ~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~ 1620 (1639)
T KOG0905|consen 1543 QDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLK 1620 (1639)
T ss_pred CCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhh
Confidence 34789999999999888889999999999999999999998 766777778999999999988889999999988764
No 108
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.15 E-value=4.8e-10 Score=61.52 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=51.9
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC-C---CCeeeEEEEEecCC
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-T---KNEKIFFFFFSSSS 80 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~-~---~~~~lG~~~~~l~~ 80 (87)
.++||.+.+ ++ ....||+++.++.+|.|+|.|.|..... -..+.|.+|..+.. + .+++||.+.+++++
T Consensus 27 ~~~Y~~i~L--d~--~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 27 KRYYCELCL--DK--TLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred CCceEEEEE--CC--EEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 478999998 33 2367999999999999999999975443 14799999864432 1 56899999998754
No 109
>KOG1264|consensus
Probab=99.05 E-value=9e-10 Score=73.19 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=60.5
Q ss_pred CCCEEEEEEEeCCceeeeEecc-cccCCCCCeec-eEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTH-VKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~-~~~~~~~P~~~-~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
..|||++.+.+......+++|. +..+++||+|| +.|+|.+..++.. .|++.|++.|.++...|||++++++..
T Consensus 1085 ~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A--~lRF~V~eeDmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1085 ACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFA--FLRFVVYEEDMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred cCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceE--EEEEEEecccccCCcceeeeeecchhh
Confidence 4599999997654444455555 57889999999 9999999888776 899999999999988999999998764
No 110
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.05 E-value=6e-10 Score=75.75 Aligned_cols=73 Identities=37% Similarity=0.466 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+|.+||||.+.+. + ...++|+++++++||.|||.+...+.+...+ -+.+.++|++...+++.||.+.++|+..
T Consensus 1058 ng~sDpfv~~~ln--~--k~vyktkv~KktlNPvwNEe~~i~v~~r~~D--~~~i~v~Dwd~~~knd~lg~~~idL~~l 1130 (1227)
T COG5038 1058 NGYSDPFVKLFLN--E--KSVYKTKVVKKTLNPVWNEEFTIEVLNRVKD--VLTINVNDWDSGEKNDLLGTAEIDLSKL 1130 (1227)
T ss_pred CCCCCceEEEEec--c--eecccccchhccCCCCccccceEeeeccccc--eEEEEEeecccCCCccccccccccHhhc
Confidence 5779999999983 2 2389999999999999999999998876655 7889999999999999999999987653
No 111
>KOG1013|consensus
Probab=99.02 E-value=2.4e-10 Score=69.00 Aligned_cols=77 Identities=30% Similarity=0.391 Sum_probs=67.9
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEec
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSS 78 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l 78 (87)
+++.+||||..++.++...+.+++|.+.+.+.+|.|++.|.+.+.+.++....+.+++|+++..+..+++|......
T Consensus 250 sng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 250 SNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG 326 (362)
T ss_pred cCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCCcCccCCCcccccc
Confidence 57889999999998777777799999999999999999999999999998889999999999887788887766543
No 112
>KOG1011|consensus
Probab=98.98 E-value=8.2e-10 Score=72.22 Aligned_cols=69 Identities=28% Similarity=0.446 Sum_probs=55.8
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC-----------CCCee
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-----------TKNEK 70 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~-----------~~~~~ 70 (87)
+.|.+||||...+ ++ .+.+|+.+..++||.|+|.|+|...+. ...+++.|||.+.. ..++|
T Consensus 312 ktg~sdpyvt~qv---~k--tkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwded~dlksklrqkl~resddf 383 (1283)
T KOG1011|consen 312 KTGKSDPYVTAQV---GK--TKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDNDLKSKLRQKLTRESDDF 383 (1283)
T ss_pred cCCCCCCcEEEee---cc--cchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecCcccHHHHHHHHhhhccccc
Confidence 4688999999987 22 278999999999999999999998765 35899999997652 35679
Q ss_pred eEEEEEec
Q psy12855 71 IFFFFFSS 78 (87)
Q Consensus 71 lG~~~~~l 78 (87)
+|+..+.+
T Consensus 384 lgqtviev 391 (1283)
T KOG1011|consen 384 LGQTVIEV 391 (1283)
T ss_pred ccceeEEE
Confidence 99987754
No 113
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.67 E-value=1.1e-07 Score=65.19 Aligned_cols=71 Identities=30% Similarity=0.432 Sum_probs=57.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++..|||+.+.. .+.. ..||++++++.||.|||++-..+..- ...|.+++||......+..+|.+.++|+.
T Consensus 456 ~~~vDpyit~~~--~~r~--~gkT~v~~nt~nPvwNEt~Yi~lns~---~d~L~LslyD~n~~~sd~vvG~~~l~L~~ 526 (1227)
T COG5038 456 NGTVDPYITVTF--SDRV--IGKTRVKKNTLNPVWNETFYILLNSF---TDPLNLSLYDFNSFKSDKVVGSTQLDLAL 526 (1227)
T ss_pred cCCCCceEEEEe--cccc--CCccceeeccCCccccceEEEEeccc---CCceeEEEEeccccCCcceeeeEEechHH
Confidence 577899999985 2222 45999999999999999887666432 25899999998888899999999998753
No 114
>KOG1011|consensus
Probab=98.67 E-value=8.9e-08 Score=63.04 Aligned_cols=78 Identities=19% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCCCCEEEEEEEeC--CceeeeEecccccCCCCCeeceEEEEEecCCC-CcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYK--GQRVAKKKTHVKKRTLNPVYNESFVFEVPADN-LDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~--~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~-~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+|...|||++.+.+. +.+++++.|+.+.++..|.|||+|+|-+.++. +....|.++|.|++....+..+|.+.++|.
T Consensus 1142 sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~ 1221 (1283)
T KOG1011|consen 1142 SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLR 1221 (1283)
T ss_pred ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehh
Confidence 466789999998732 34567899999999999999999999988764 334678999999999888899999998876
Q ss_pred C
Q psy12855 80 S 80 (87)
Q Consensus 80 ~ 80 (87)
+
T Consensus 1222 ~ 1222 (1283)
T KOG1011|consen 1222 S 1222 (1283)
T ss_pred h
Confidence 4
No 115
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.65 E-value=2.7e-07 Score=47.92 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=46.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
.+.++|||.+.+ .+. .+.||+. +.||.|||.|.|.+.. ...+.+.+||.... ..-.+|..-+.++
T Consensus 20 ~~~~etyV~IKv--ed~--~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk~~~-~~~Pi~llW~~~s 84 (109)
T cd08689 20 SKRPETYVSIKV--EDV--ERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDKGGD-QPVPVGLLWLRLS 84 (109)
T ss_pred ccCCCcEEEEEE--CCE--EEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeCCCC-eecceeeehhhHH
Confidence 456799999998 322 2667776 3789999999999943 35899999997543 3345676655543
No 116
>KOG2059|consensus
Probab=98.54 E-value=1.9e-07 Score=61.40 Aligned_cols=67 Identities=24% Similarity=0.319 Sum_probs=57.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
.|..||||.+.+.. ....+|.++.+++.|-|.|.+.|+++..- +.|.|-|||.+ +++|+.||.+.+.
T Consensus 23 ~g~~D~yC~v~lD~----E~v~RT~tv~ksL~PF~gEe~~~~iP~~F---~~l~fYv~D~d-~~~D~~IGKvai~ 89 (800)
T KOG2059|consen 23 SGMRDCYCTVNLDQ----EEVCRTATVEKSLCPFFGEEFYFEIPRTF---RYLSFYVWDRD-LKRDDIIGKVAIK 89 (800)
T ss_pred CCCcCcceEEeecc----hhhhhhhhhhhhcCCccccceEEecCcce---eeEEEEEeccc-cccccccceeeee
Confidence 47789999999842 33889999999999999999999997652 47899999999 8899999998775
No 117
>KOG2059|consensus
Probab=98.52 E-value=1.5e-07 Score=61.88 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=58.8
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC-------------CCcccEEEEEEEE-cCCCCC
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD-------------NLDSVSLELLLLD-WDRVTK 67 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~-------------~~~~~~l~v~v~~-~~~~~~ 67 (87)
-++.+|||+.+...... .....+|+..+.+.+|.|+|.+.|.+..+ +.+...|.+++|+ .+....
T Consensus 147 ~~~~~dp~~~v~~~g~~-~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~ 225 (800)
T KOG2059|consen 147 INGQCDPFARVTLCGPS-KLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIN 225 (800)
T ss_pred eCCCCCcceEEeecccc-hhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhh
Confidence 36679999999875332 22237899999999999999999986544 1123578899998 555555
Q ss_pred CeeeEEEEEecCCc
Q psy12855 68 NEKIFFFFFSSSSS 81 (87)
Q Consensus 68 ~~~lG~~~~~l~~~ 81 (87)
+.|+|++.++++..
T Consensus 226 ~~FlGevrv~v~~~ 239 (800)
T KOG2059|consen 226 DVFLGEVRVPVDVL 239 (800)
T ss_pred hhhceeEEeehhhh
Confidence 88999999987654
No 118
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.44 E-value=3.5e-07 Score=46.09 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=51.0
Q ss_pred eEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCcee
Q psy12855 23 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSFF 83 (87)
Q Consensus 23 ~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~~ 83 (87)
..||..++...+|+|+|+|.|.+....+....|.++++. ...+.+-+|.+.+.+++++.
T Consensus 36 ~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~ge 94 (103)
T cd08684 36 HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLST 94 (103)
T ss_pred cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccceeeEEEeecccCCH
Confidence 688999999999999999999988778877889999987 44566799999999998764
No 119
>KOG1031|consensus
Probab=98.43 E-value=5.4e-07 Score=58.90 Aligned_cols=72 Identities=29% Similarity=0.397 Sum_probs=61.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeec-eEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYN-ESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~-~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
...|.||++.+... .++|.+..+++||.|| +=|.|.+...+++..+|++.+.|++..+-++-||.+.+.++.
T Consensus 23 d~tdafveik~~n~-----t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysandaigkv~i~idp 95 (1169)
T KOG1031|consen 23 DLTDAFVEIKFANT-----TFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDP 95 (1169)
T ss_pred ccchheeEEEeccc-----ceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccccccccceeeeccCh
Confidence 34678999988322 7899999999999999 567899988888878999999999999999999999998775
No 120
>PLN02270 phospholipase D alpha
Probab=98.42 E-value=1.7e-06 Score=58.13 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=55.7
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCC-CCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~-~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.++|||.+.+ . ..+..+|+++.+. .||.|+|+|..++.... ..+.|+|.+.+.++. .+||.+.++..+
T Consensus 45 ~~~~~y~tv~~--~--~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~~---~~v~f~vkd~~~~g~-~~ig~~~~p~~~ 114 (808)
T PLN02270 45 GESQLYATIDL--E--KARVGRTRKIENEPKNPRWYESFHIYCAHMA---SNIIFTVKDDNPIGA-TLIGRAYIPVEE 114 (808)
T ss_pred CCCCceEEEEe--C--CcEEEEEeecCCCCCCCccccceEEeeccCc---ceEEEEEecCCccCc-eEEEEEEEEHHH
Confidence 56799999998 3 2348899998775 69999999999986653 579999999888865 599999998654
No 121
>KOG1328|consensus
Probab=98.34 E-value=2e-07 Score=61.88 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=31.6
Q ss_pred EecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCC
Q psy12855 24 KKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 64 (87)
Q Consensus 24 ~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~ 64 (87)
+-|.++..++||.|+|.|.|.+ ++.....+.+.+||++.
T Consensus 179 katsvk~~TLnPkW~EkF~F~I--eDv~tDqfHlDIWDHDD 217 (1103)
T KOG1328|consen 179 KATSVKKKTLNPKWSEKFQFTI--EDVQTDQFHLDIWDHDD 217 (1103)
T ss_pred hhcccccccCCcchhhheeeeh--hccccceeeeecccCCc
Confidence 4466778899999999999998 44545589999999874
No 122
>KOG1326|consensus
Probab=98.17 E-value=5.7e-07 Score=61.08 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=59.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
+|.+|||+.+.+ ++.....+...+.++++|.|.+.|.+....+. ...+.+.||+++..+.++.+|+..+.++.++
T Consensus 631 ng~adpYv~l~l---Gk~~~~d~~~yip~tlnPVfgkmfel~~~lp~--ek~l~v~vyd~D~~~~d~~iget~iDLEnR~ 705 (1105)
T KOG1326|consen 631 NGDADPYVKLLL---GKKRTLDRAHYIPNTLNPVFGKMFELECLLPF--EKDLIVEVYDHDLEAQDEKIGETTIDLENRW 705 (1105)
T ss_pred CCCcCceeeeee---ccchhhhhhhcCcCCCCcHHHHHHHhhcccch--hhcceeEEEEeecccccchhhceehhhhhcc
Confidence 577999999988 44333456777899999999998877643332 3578999999999999999999999887764
No 123
>KOG1013|consensus
Probab=98.16 E-value=2e-07 Score=56.66 Aligned_cols=78 Identities=31% Similarity=0.364 Sum_probs=62.1
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
.++..|||+...+++......+.+|++..++.||.|+++..+. +..++..-..+.+.+++.+.+.++++.|+..+++.
T Consensus 110 ~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lk 188 (362)
T KOG1013|consen 110 INGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLK 188 (362)
T ss_pred hhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhh
Confidence 4678899999999887666667999999999999999998887 43344333567788888888888899999886543
No 124
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=98.01 E-value=0.00017 Score=40.27 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCCCEEEEEEEeCCceee-eEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 5 ELDPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~-~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.++.||.+.+-.++.... ...|..+.-+..+.|||-..|++...++. ...|.+++|+....+....+|.+.+++-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 466788887755443221 33555555556789999999998777663 46799999997765566789999987643
No 125
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.97 E-value=5.8e-05 Score=40.75 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=52.6
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecC-------------CCCcccEEEEEEEEcCCC-------
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPA-------------DNLDSVSLELLLLDWDRV------- 65 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~-------------~~~~~~~l~v~v~~~~~~------- 65 (87)
-++|+.+.+..- .+....+|+++.++..|+|+..+.|.++- +-+....+.+++|+...-
T Consensus 33 VN~yv~i~lSFl-~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 33 VNSYVTIHLSFL-PEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred cceEEEEEeccC-CCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 578999886421 12337899999999999999999998651 123346789999985532
Q ss_pred ---CCCeeeEEEEEecCC
Q psy12855 66 ---TKNEKIFFFFFSSSS 80 (87)
Q Consensus 66 ---~~~~~lG~~~~~l~~ 80 (87)
..|-.||.+.+++.+
T Consensus 112 ~~~~~DilLG~v~IPl~~ 129 (143)
T cd08683 112 IETSGDILLGTVKIPLRD 129 (143)
T ss_pred cCcCCcEEEEEEEeeHHH
Confidence 234488999988753
No 126
>KOG2060|consensus
Probab=97.89 E-value=3.6e-06 Score=52.13 Aligned_cols=73 Identities=29% Similarity=0.426 Sum_probs=60.1
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEE-cCCCCCCeeeEEEEEecCC
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD-WDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~-~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.|||++|+++.+....+.+|+...++.+|.|.+...|.-.++ ...|.+++|. ++...+..|+|.+++-+++
T Consensus 290 ~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~---~k~Lq~tv~gdygRmd~k~fmg~aqi~l~e 363 (405)
T KOG2060|consen 290 LPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPP---GKYLQGTVWGDYGRMDHKSFMGVAQIMLDE 363 (405)
T ss_pred ccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCC---ccEEEEEEeccccccchHHHhhHHHHHhhh
Confidence 57899999999888888899999999999999998888876554 3689999995 7777777788877765544
No 127
>PLN02964 phosphatidylserine decarboxylase
Probab=97.80 E-value=4.8e-05 Score=50.58 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=48.4
Q ss_pred eEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 23 KKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 23 ~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
.+||...+++.+|.||+...|.+...+.. ...+.||+.+.++.++++|.+.+++.
T Consensus 81 ~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~n~lv~~~e~~~t 135 (644)
T PLN02964 81 TFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFETNRLSKNTLVGYCELDLF 135 (644)
T ss_pred eeeeccccccCCcccchhhceEeccCCcc--eEEEEEEecCCCCHHHhhhheeecHh
Confidence 89999999999999999999998777655 56999999999999999999888553
No 128
>KOG1327|consensus
Probab=97.76 E-value=8e-05 Score=48.32 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=56.8
Q ss_pred CCCCCEEEEEEE-eCCceeeeEecccccCCCCCeeceEEEEEecCCCCc----ccEEEEEEEEcCCCCCCeeeEEEEEec
Q psy12855 4 NELDPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD----SVSLELLLLDWDRVTKNEKIFFFFFSS 78 (87)
Q Consensus 4 ~~~~p~v~i~~~-~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~----~~~l~v~v~~~~~~~~~~~lG~~~~~l 78 (87)
+.+|||..++-. .++.....++|.+.+++.+|.|.+. .++...++ ..++.+.+|+++..++++++|++..++
T Consensus 155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~---~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~ 231 (529)
T KOG1327|consen 155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF---SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTL 231 (529)
T ss_pred ccCCcceEEEEecCCCceeeccccceeccCCCCccccc---ccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccH
Confidence 457888887765 4566777899999999999999943 33322221 367889999999998889999998766
Q ss_pred CCc
Q psy12855 79 SSS 81 (87)
Q Consensus 79 ~~~ 81 (87)
.+.
T Consensus 232 ~~~ 234 (529)
T KOG1327|consen 232 SEL 234 (529)
T ss_pred HHh
Confidence 544
No 129
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=97.59 E-value=0.0026 Score=34.80 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=49.1
Q ss_pred CEEEEEEEeCCceee--eEecccccCC-CCCeeceEEEEEecCCCCc-ccEEEEEEEEcCCCCCC----eeeEEEEEecC
Q psy12855 8 PYVKVYLLYKGQRVA--KKKTHVKKRT-LNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVTKN----EKIFFFFFSSS 79 (87)
Q Consensus 8 p~v~i~~~~~~~~~~--~~~t~~~~~~-~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~~~~~~~----~~lG~~~~~l~ 79 (87)
.||.+.+-.+++... ...|....-+ ..+.|+|.+.|.+...++. +..|.+++|+....... ..||.+.+++=
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lF 83 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLF 83 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeE
Confidence 466666655554433 3366666665 7899999999997665553 46799999986665444 68999998864
Q ss_pred C
Q psy12855 80 S 80 (87)
Q Consensus 80 ~ 80 (87)
+
T Consensus 84 d 84 (142)
T PF00792_consen 84 D 84 (142)
T ss_dssp -
T ss_pred C
Confidence 3
No 130
>PLN02352 phospholipase D epsilon
Probab=97.41 E-value=0.0007 Score=45.93 Aligned_cols=60 Identities=17% Similarity=0.233 Sum_probs=44.6
Q ss_pred CCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 7 ~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+||+.+.+ . ..+..+| .+..||.|+|+|..++.... ...+.|+|.+ ...+||.+.++..+
T Consensus 37 ~~y~tv~~--~--~~~v~rt---~~~~~p~w~e~f~i~~ah~~--~~~~~f~vk~-----~~~~ig~~~~p~~~ 96 (758)
T PLN02352 37 ATYVTIKI--G--NKKVAKT---SHEYDRVWNQTFQILCAHPL--DSTITITLKT-----KCSILGRFHIQAHQ 96 (758)
T ss_pred CceEEEEe--C--CcEEecC---CCCCCCccccceeEEeeeec--CCcEEEEEec-----CCeEEEEEEEEHHH
Confidence 89999998 3 2336677 55569999999999876552 1368899977 25799999997543
No 131
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.40 E-value=0.0024 Score=35.40 Aligned_cols=75 Identities=19% Similarity=0.202 Sum_probs=48.6
Q ss_pred CCCEEEEEEEeCCce-eeeEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEcCCCC--CCeeeEEEEEecCC
Q psy12855 6 LDPYVKVYLLYKGQR-VAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVT--KNEKIFFFFFSSSS 80 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~-~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~~~~~--~~~~lG~~~~~l~~ 80 (87)
.+.||.+.+-.+++. .....|.....+.++.|||...|.+...++. +..|.+++|+....+ .+..+|.+.+++=+
T Consensus 28 ~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 28 LKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred eeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 345666655444332 2233444444446799999999986655553 467999999866543 45789999987644
No 132
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=97.21 E-value=0.0051 Score=35.05 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=38.7
Q ss_pred eeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCC-CC--eeeEEEEEecCCcee
Q psy12855 22 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT-KN--EKIFFFFFSSSSSFF 83 (87)
Q Consensus 22 ~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~-~~--~~lG~~~~~l~~~~~ 83 (87)
..+.|.+...+.+|.|+|++.+.++..-.....|.+++++...-. .+ ..+|.+.++|-+.+.
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g~ 123 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNGT 123 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS-
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCCe
Confidence 456666777788999999999999887666778999999854422 21 689999999987665
No 133
>KOG1326|consensus
Probab=97.12 E-value=0.00043 Score=47.88 Aligned_cols=70 Identities=27% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE---ecCCC----CcccEEEEEEEEcCCCCCCeeeEEE
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE---VPADN----LDSVSLELLLLDWDRVTKNEKIFFF 74 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~---~~~~~----~~~~~l~v~v~~~~~~~~~~~lG~~ 74 (87)
+++.+|||..+..... .+.|.+..++++|.|+++..|. +..+. -....+.+++++.+..+.++++|..
T Consensus 223 k~~~sdp~a~v~f~~q-----s~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~ 297 (1105)
T KOG1326|consen 223 KDDESDPDAAVEFCGQ-----SKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRK 297 (1105)
T ss_pred cccCCCchhhhhcccc-----cceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhccc
Confidence 3566888888877433 7899999999999999999986 22110 0124678999999999999999986
Q ss_pred EE
Q psy12855 75 FF 76 (87)
Q Consensus 75 ~~ 76 (87)
..
T Consensus 298 ~~ 299 (1105)
T KOG1326|consen 298 KQ 299 (1105)
T ss_pred cc
Confidence 54
No 134
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=97.11 E-value=0.0045 Score=35.63 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=46.4
Q ss_pred eeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCC-C-CeeeEEEEEecCC
Q psy12855 21 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT-K-NEKIFFFFFSSSS 80 (87)
Q Consensus 21 ~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~-~-~~~lG~~~~~l~~ 80 (87)
...++|-+...+.+|.|+|++.+.++.+......|.+++++..... . ....|-+.++|=+
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 3467788888889999999999999988877788999888644321 2 2578998888754
No 135
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.06 E-value=0.016 Score=32.94 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=47.8
Q ss_pred CCCEEEEEEEeCCcee-eeEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEcCCCC----------------C
Q psy12855 6 LDPYVKVYLLYKGQRV-AKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVT----------------K 67 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~-~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~~~~~----------------~ 67 (87)
.+.||.+.+-.++... ....|+....+..+.|+|.+.|.+...++. +..|.+++|+..... .
T Consensus 27 ~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~ 106 (173)
T cd08693 27 MKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKD 106 (173)
T ss_pred ceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCc
Confidence 4456666554443332 234555555456799999999987766653 467999999854321 2
Q ss_pred CeeeEEEEEecCC
Q psy12855 68 NEKIFFFFFSSSS 80 (87)
Q Consensus 68 ~~~lG~~~~~l~~ 80 (87)
...+|.+.+.+-+
T Consensus 107 ~~~ig~~n~~LFd 119 (173)
T cd08693 107 DNPIAWVNTMVFD 119 (173)
T ss_pred ceEEEEEeEEEEc
Confidence 3588888876543
No 136
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.96 E-value=0.018 Score=32.22 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=46.4
Q ss_pred CCCEEEEEEEeCCceee-eEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEcCCCC----CCeeeEEEEEecC
Q psy12855 6 LDPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRVT----KNEKIFFFFFSSS 79 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~-~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~~~~~----~~~~lG~~~~~l~ 79 (87)
.+.||.+.+-.++.... ...|..+.. .++.|||-..|.+...++. +..|.+++|+..... ....+|.+.++|-
T Consensus 26 ~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 26 DKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 45677776654433221 223433333 5789999999987766653 467999999865321 2246899888764
Q ss_pred C
Q psy12855 80 S 80 (87)
Q Consensus 80 ~ 80 (87)
+
T Consensus 105 d 105 (158)
T cd08398 105 D 105 (158)
T ss_pred C
Confidence 3
No 137
>KOG1265|consensus
Probab=96.88 E-value=0.0015 Score=45.07 Aligned_cols=72 Identities=25% Similarity=0.352 Sum_probs=50.0
Q ss_pred CCCCCCEEEEEEE--eCCceeeeEecccc-cCCCCCeec-eEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 3 DNELDPYVKVYLL--YKGQRVAKKKTHVK-KRTLNPVYN-ESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 3 ~~~~~p~v~i~~~--~~~~~~~~~~t~~~-~~~~~P~~~-~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
+-....||++.+- |.....+.++|++. .++.||.|+ +.|.|. +--+++. .|+|.+++.+ ..++|+-.++
T Consensus 717 drkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA--~lRiavyeEg----gK~ig~RIlp 790 (1189)
T KOG1265|consen 717 DRKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELA--SLRIAVYEEG----GKFIGQRILP 790 (1189)
T ss_pred ccccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchh--heeeeeeccC----Cceeeeeccc
Confidence 3445678888764 44444567888885 557999998 567776 4445554 8999999743 3588888877
Q ss_pred cCC
Q psy12855 78 SSS 80 (87)
Q Consensus 78 l~~ 80 (87)
++.
T Consensus 791 vd~ 793 (1189)
T KOG1265|consen 791 VDG 793 (1189)
T ss_pred hhc
Confidence 654
No 138
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.70 E-value=0.029 Score=32.51 Aligned_cols=59 Identities=14% Similarity=0.243 Sum_probs=45.6
Q ss_pred eeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC----CCCeeeEEEEEecC
Q psy12855 21 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV----TKNEKIFFFFFSSS 79 (87)
Q Consensus 21 ~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~ 79 (87)
...++|-+...+.+|.|+|++.+.++.+...+..|.+++++.... ..+...|-+.++|=
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 346777777788899999999999998888778899999874421 12357898888875
No 139
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.63 E-value=0.032 Score=31.89 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred CEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEc
Q psy12855 8 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 62 (87)
Q Consensus 8 p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~ 62 (87)
.||.+.+-.++......+|.....+.++.|||-..|.+...++. ...|.+++|+.
T Consensus 32 l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~ 87 (178)
T cd08399 32 VFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG 87 (178)
T ss_pred EEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEE
Confidence 45666554433323334555555566799999999997777663 46799999985
No 140
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=96.26 E-value=0.07 Score=30.35 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=40.4
Q ss_pred cCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC-----CCCeeeEEEEEecCC-cee
Q psy12855 30 KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-----TKNEKIFFFFFSSSS-SFF 83 (87)
Q Consensus 30 ~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~-----~~~~~lG~~~~~l~~-~~~ 83 (87)
..+.+|.|++++...++........|.+++++...- .....+|-+.++|-+ .+.
T Consensus 60 ~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~ 119 (178)
T cd08679 60 YYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGA 119 (178)
T ss_pred EcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCc
Confidence 333789999999999976654567899999975422 335689999999887 443
No 141
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=96.01 E-value=0.11 Score=29.83 Aligned_cols=62 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred eeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCC------CCeeeEEEEEecCCcee
Q psy12855 22 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT------KNEKIFFFFFSSSSSFF 83 (87)
Q Consensus 22 ~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~------~~~~lG~~~~~l~~~~~ 83 (87)
....|.+...+.+|.|.+.+-..++..-.+...|.|++++...-. .+..+|-+.++|-+.+.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g~ 121 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNGR 121 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCCE
Confidence 456666777888999999999998877666678999998733221 23578999999877664
No 142
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.96 E-value=0.11 Score=29.38 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=46.0
Q ss_pred CCCEEEEEEEeCCceee-eEeccccc----CCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCCC---------CCee
Q psy12855 6 LDPYVKVYLLYKGQRVA-KKKTHVKK----RTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRVT---------KNEK 70 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~-~~~t~~~~----~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~~---------~~~~ 70 (87)
.+.|+.+.+-.+++... ...|+... -...+.|||-..|.+...++ .+..|.+++|+..... .+..
T Consensus 29 ~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~ 108 (171)
T cd04012 29 EDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEE 108 (171)
T ss_pred ccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceE
Confidence 45667776654433221 22333211 12357799999998765555 3467999999865543 3468
Q ss_pred eEEEEEecCC
Q psy12855 71 IFFFFFSSSS 80 (87)
Q Consensus 71 lG~~~~~l~~ 80 (87)
||.+.++|=+
T Consensus 109 lG~~~~~LFd 118 (171)
T cd04012 109 LGWVSLPLFD 118 (171)
T ss_pred EEEEeEeeEc
Confidence 9999887644
No 143
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=95.96 E-value=0.13 Score=29.09 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=46.5
Q ss_pred CEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCcee
Q psy12855 8 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSFF 83 (87)
Q Consensus 8 p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~~ 83 (87)
-|+++.+ +++.+...+.+.......-.|++.|.+.+..- ...|.+.+|.... ..+..|+.+.+++-....
T Consensus 39 ~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~---Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 39 YYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQITRW---PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred EEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEEEecC---CCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 4666666 54444333333343444467889998887442 2589999999776 567799999998766544
No 144
>KOG3837|consensus
Probab=95.82 E-value=0.007 Score=38.73 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=51.0
Q ss_pred CCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCC---------CcccEEEEEEEEcCC-CCCCeeeEEEEE
Q psy12855 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADN---------LDSVSLELLLLDWDR-VTKNEKIFFFFF 76 (87)
Q Consensus 7 ~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~---------~~~~~l~v~v~~~~~-~~~~~~lG~~~~ 76 (87)
|.|+.+...-......+.+|.+++.+.+|.|++.|.+.+.... ..+..+.|.+++.+. +..|.++|.+.+
T Consensus 389 d~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~ni 468 (523)
T KOG3837|consen 389 DQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNI 468 (523)
T ss_pred HhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeee
Confidence 3455555421112334788999999999999999998876521 123568999998665 466789999988
Q ss_pred ecC
Q psy12855 77 SSS 79 (87)
Q Consensus 77 ~l~ 79 (87)
.+.
T Consensus 469 kle 471 (523)
T KOG3837|consen 469 KLE 471 (523)
T ss_pred eeh
Confidence 764
No 145
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.64 E-value=0.18 Score=28.33 Aligned_cols=66 Identities=23% Similarity=0.427 Sum_probs=44.6
Q ss_pred CEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCc-----------ccEEEEEEEEcCCCCCCeeeEEEEE
Q psy12855 8 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-----------SVSLELLLLDWDRVTKNEKIFFFFF 76 (87)
Q Consensus 8 p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-----------~~~l~v~v~~~~~~~~~~~lG~~~~ 76 (87)
....+++.-.++ +++|+.+..+.+|.|++.|.|++...... ...+.+.+...+..+...++|.-.+
T Consensus 34 s~~~l~l~f~~Q---RF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~l 110 (156)
T PF15627_consen 34 STFTLHLHFRGQ---RFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFL 110 (156)
T ss_pred eEEEEEEEecCc---eEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeecee
Confidence 344444433333 89999999999999999999998766411 2456777766665555566666544
No 146
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.54 E-value=0.14 Score=26.40 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=37.4
Q ss_pred CCEEEEEEEeCCceee-eEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEcC
Q psy12855 7 DPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWD 63 (87)
Q Consensus 7 ~p~v~i~~~~~~~~~~-~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~~ 63 (87)
+.||.+.+-.++.... ...|..+.-+..+.|||-..|.+...++. +..|.+++|+..
T Consensus 33 ~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 33 DLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5677776654443222 33455554455689999999987766553 467999999854
No 147
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=95.20 E-value=0.3 Score=28.20 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=44.5
Q ss_pred eeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCC--CC-------CCeeeEEEEEecCC
Q psy12855 21 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR--VT-------KNEKIFFFFFSSSS 80 (87)
Q Consensus 21 ~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~--~~-------~~~~lG~~~~~l~~ 80 (87)
.....|.+...+.+|.|.+.+-..++..-.....|.|++++... .. .+..+|-+.++|-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 34566667778889999999999988776666789999997541 11 23578999998865
No 148
>KOG1327|consensus
Probab=94.32 E-value=0.07 Score=35.29 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.5
Q ss_pred eeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC----CCCeeeEEEEEecCCc
Q psy12855 21 VAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV----TKNEKIFFFFFSSSSS 81 (87)
Q Consensus 21 ~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~~~ 81 (87)
....+|..+++.++|.|.+.+......+..+ .+++.+++.+.. ...+|+|++...+.+.
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ--~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~i 102 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQ--LLRFEVYDIDSRTPDLSSADFLGTAECTLSQI 102 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeee--eEEEEEeecCCccCCcchhcccceeeeehhhh
Confidence 3456888999999999999998887777655 788999885543 4457999988877653
No 149
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=91.21 E-value=1.6 Score=27.71 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=47.2
Q ss_pred eEecccccCCCCCeeceEEEEEecCCC-----CcccEEEEEEEEcC-CCCCCeeeEEEEEecCCc
Q psy12855 23 KKKTHVKKRTLNPVYNESFVFEVPADN-----LDSVSLELLLLDWD-RVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 23 ~~~t~~~~~~~~P~~~~~~~f~~~~~~-----~~~~~l~v~v~~~~-~~~~~~~lG~~~~~l~~~ 81 (87)
...|.....+..|.|+..+.+.+.... .+..+|++++|..+ ..+..+.+|.+.++|...
T Consensus 30 ~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 30 SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccc
Confidence 677888888889999999998865443 34578999999877 556678999999998765
No 150
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.97 E-value=1.3 Score=22.83 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCCeeceEEEEEecCCCCcccEEEEEEEEcC
Q psy12855 33 LNPVYNESFVFEVPADNLDSVSLELLLLDWD 63 (87)
Q Consensus 33 ~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~ 63 (87)
.+..|++.|.+.+... +.|.|.|+-+|
T Consensus 31 s~q~WDQ~Fti~LdRs----RELEI~VywrD 57 (98)
T cd08687 31 SNQAWDQSFTLELERS----RELEIAVYWRD 57 (98)
T ss_pred ccccccceeEEEeecc----cEEEEEEEEec
Confidence 4689999999998654 68999998655
No 151
>KOG0906|consensus
Probab=87.95 E-value=1.1 Score=30.92 Aligned_cols=46 Identities=17% Similarity=0.083 Sum_probs=36.3
Q ss_pred eeceEEEEEecCCCCc-ccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 36 VYNESFVFEVPADNLD-SVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 36 ~~~~~~~f~~~~~~~~-~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.|||=..+.+...++. ...+.+++|+........++|+.++.+...
T Consensus 78 ~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k 124 (843)
T KOG0906|consen 78 NWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGK 124 (843)
T ss_pred chhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecc
Confidence 5999888887777663 467999999977777778999998876543
No 152
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=86.39 E-value=4.3 Score=22.95 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=45.2
Q ss_pred CCCEEEEEEEeCCcee-----e-eEecccccC-----CCCCeeceEEEEEecCCCCcc-cEEEEEEEEcCCCCCCeeeEE
Q psy12855 6 LDPYVKVYLLYKGQRV-----A-KKKTHVKKR-----TLNPVYNESFVFEVPADNLDS-VSLELLLLDWDRVTKNEKIFF 73 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~-----~-~~~t~~~~~-----~~~P~~~~~~~f~~~~~~~~~-~~l~v~v~~~~~~~~~~~lG~ 73 (87)
.+.||+..+.....++ . ...|+.... +..-.|+..+.+.+....... ..|.++||..|..+++.+.|-
T Consensus 17 ~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~GY 96 (168)
T PF07162_consen 17 DNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVEGY 96 (168)
T ss_pred CCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEeEE
Confidence 3568888776332221 1 234444322 334578888877765554432 479999999999999888876
Q ss_pred EEEe
Q psy12855 74 FFFS 77 (87)
Q Consensus 74 ~~~~ 77 (87)
..+.
T Consensus 97 G~~~ 100 (168)
T PF07162_consen 97 GFCH 100 (168)
T ss_pred eEEE
Confidence 5543
No 153
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=86.30 E-value=2.2 Score=22.45 Aligned_cols=56 Identities=27% Similarity=0.228 Sum_probs=29.2
Q ss_pred eEecccccCCCCCeeceEEEEEecCCCC-----cccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 23 KKKTHVKKRTLNPVYNESFVFEVPADNL-----DSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 23 ~~~t~~~~~~~~P~~~~~~~f~~~~~~~-----~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.|.+.. +.+|.++-+..|.+...++ +...+.++++..- ....+.+|.+.+++.+
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRP 72 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SH
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechh
Confidence 45566655 6799999998998776543 3568899998755 2335788999988754
No 154
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=86.23 E-value=3.7 Score=22.13 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=32.8
Q ss_pred CCCCeeceEEEEEec----CC--CCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 32 TLNPVYNESFVFEVP----AD--NLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 32 ~~~P~~~~~~~f~~~----~~--~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+..-.|++.+.+.+. .. ......+.+.|+.....++...+|.+.+.|.+
T Consensus 49 ~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 49 NGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred ccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHH
Confidence 445799998888722 11 24556788999876433333689999998753
No 155
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=80.40 E-value=5.4 Score=19.59 Aligned_cols=29 Identities=14% Similarity=0.092 Sum_probs=21.7
Q ss_pred EEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 54 SLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 54 ~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
...|.+|+.+....+++|+.....-+..|
T Consensus 13 ~~~V~L~e~d~~~~Ddll~~~~Td~~G~F 41 (80)
T PF01060_consen 13 NVKVKLWEDDYFDPDDLLDETKTDSDGNF 41 (80)
T ss_pred CCEEEEEECCCCCCCceeEEEEECCCceE
Confidence 45699999888778889998777554443
No 156
>KOG4028|consensus
Probab=74.13 E-value=6.2 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=19.5
Q ss_pred EEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 54 SLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 54 ~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
.|.+.+|..|++++.++.|..++-
T Consensus 75 rl~~qiw~~dnfgr~eiagyg~~~ 98 (175)
T KOG4028|consen 75 RLHFQIWHHDNFGRCEIAGYGFCH 98 (175)
T ss_pred eeeeeeeecCcccceeecccceEe
Confidence 688999999999998877765543
No 157
>KOG1452|consensus
Probab=72.12 E-value=9.8 Score=24.29 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=29.3
Q ss_pred CCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCC
Q psy12855 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK 67 (87)
Q Consensus 7 ~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~ 67 (87)
+.|+.+.. + +..+.+|.+......-.|.|+|...+-.. .-+.+-+|.|+...+
T Consensus 75 ~~ycVle~--d--rqh~aRt~vrs~~~~f~w~e~F~~Dvv~~----~vl~~lvySW~pq~R 127 (442)
T KOG1452|consen 75 CFYCVLEP--D--RQHPARTRVRSSGPGFAWAEDFKHDVVNI----EVLHYLVYSWPPQRR 127 (442)
T ss_pred eeeeeeee--c--ccCccccccccCCCCccchhhceeecccc----eeeeEEEeecCchhh
Confidence 34555544 2 22244555555555557778877765432 255667777766443
No 158
>KOG0694|consensus
Probab=63.39 E-value=3.8 Score=28.46 Aligned_cols=51 Identities=25% Similarity=0.262 Sum_probs=32.8
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCC
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 64 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~ 64 (87)
.++|+.+.+.. .....+...+.+..|.|+++|...+... ..+.+.++....
T Consensus 28 l~~y~~v~vk~----~~~~~~~~~~~~~~~~~~~~F~~~v~~~----~~~~i~v~~~~~ 78 (694)
T KOG0694|consen 28 LQPYLAVELKV----KQGAENMTKVELRIPELRETFHVEVVAG----GAKNIIVLLKSP 78 (694)
T ss_pred hhhhheeccce----eecccccCCCCCCCchhhhheeeeeecC----CceEEEEEecCC
Confidence 35676666521 1122334477788999999999986554 467777776543
No 159
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=45.25 E-value=21 Score=18.69 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=26.6
Q ss_pred eEEEEEecCCCCc----ccEEEEEEEEcCC---CCCCeeeEEEEEecCCc
Q psy12855 39 ESFVFEVPADNLD----SVSLELLLLDWDR---VTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 39 ~~~~f~~~~~~~~----~~~l~v~v~~~~~---~~~~~~lG~~~~~l~~~ 81 (87)
+++.|...+..+. ...|.+.+++... .....++|.+.+++.+.
T Consensus 11 KScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~ 60 (112)
T PF14924_consen 11 KSCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEA 60 (112)
T ss_pred cEEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHH
Confidence 4455655544332 4567777766433 34456899999988765
No 160
>KOG0904|consensus
Probab=37.74 E-value=90 Score=23.18 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=25.1
Q ss_pred EecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEE
Q psy12855 24 KKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLD 61 (87)
Q Consensus 24 ~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~ 61 (87)
.+|..+.....|.||+.+.|.+.-.++. ...|-+.|+.
T Consensus 382 ~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~~ 420 (1076)
T KOG0904|consen 382 RSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIYA 420 (1076)
T ss_pred cccCCCCCccchhccceeEeeeecCCCChhhhheeeeeE
Confidence 3444455577899999999987665553 3345566664
No 161
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=36.51 E-value=80 Score=17.64 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=40.0
Q ss_pred CCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCC----------CCcccEEEEEEEEcCCCCCCeeeEEE
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPAD----------NLDSVSLELLLLDWDRVTKNEKIFFF 74 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~----------~~~~~~l~v~v~~~~~~~~~~~lG~~ 74 (87)
..+.|..+++.+. .++|+....-.--.|++.|.|.--.. .+....+.+++++..... .+.|+..
T Consensus 19 ~~~vyL~v~~lg~-----~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~y 92 (140)
T PF14909_consen 19 KGDVYLSVCILGQ-----YKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYY 92 (140)
T ss_pred CCCEEEEEEEccc-----EeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEE
Confidence 3466777777543 56777766655557889999972211 123457888888855543 3455554
Q ss_pred EE
Q psy12855 75 FF 76 (87)
Q Consensus 75 ~~ 76 (87)
.-
T Consensus 93 e~ 94 (140)
T PF14909_consen 93 EE 94 (140)
T ss_pred ec
Confidence 43
No 162
>KOG1673|consensus
Probab=35.76 E-value=49 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=17.1
Q ss_pred ccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 52 SVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 52 ~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+..+.+++||.+. .++++.+.-+...++
T Consensus 66 ~t~IsfSIwdlgG--~~~~~n~lPiac~ds 93 (205)
T KOG1673|consen 66 GTDISFSIWDLGG--QREFINMLPIACKDS 93 (205)
T ss_pred ceEEEEEEEecCC--cHhhhccCceeecCc
Confidence 4578999998654 345555544444443
No 163
>PHA03351 tegument protein UL16; Provisional
Probab=34.74 E-value=95 Score=17.98 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=32.6
Q ss_pred cCCCCCeeceEEEEEecCC-CCcccEEEEEEEEcCCCCCCeeeEEEEEecCCcee
Q psy12855 30 KRTLNPVYNESFVFEVPAD-NLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSFF 83 (87)
Q Consensus 30 ~~~~~P~~~~~~~f~~~~~-~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~~ 83 (87)
..+.+...|.+-.-.+.+. .+...-+-++++-+.+...++.+|-+...-....+
T Consensus 36 ~~~s~c~~n~t~l~~~~~~etwt~~gicisicyy~nvsddeiigvaf~~q~nes~ 90 (235)
T PHA03351 36 EKNSNCRLNATELAEIHPGETWTLHGICISICYYENVSDDEIIGVAFTSQHNESV 90 (235)
T ss_pred cccCcceeeceeeecccCCCceEEeeeEEEEEEecccCccceEEEEEEeccCchh
Confidence 3445666666555444433 22223455667667788889999998876554443
No 164
>KOG4269|consensus
Probab=29.34 E-value=19 Score=26.31 Aligned_cols=38 Identities=26% Similarity=0.162 Sum_probs=28.1
Q ss_pred CEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEe
Q psy12855 8 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45 (87)
Q Consensus 8 p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~ 45 (87)
.||...+..-+....+.+|+...++..|.|++.++..+
T Consensus 777 lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~ 814 (1112)
T KOG4269|consen 777 LYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPV 814 (1112)
T ss_pred eeeehhhhhhccccccccceeeecccCCCCChhcccch
Confidence 45554444334556688999999999999999887764
No 165
>PF04704 Zfx_Zfy_act: Zfx / Zfy transcription activation region; InterPro: IPR006794 Zfx and Zfy are transcription factors implicated in mammalian sex determination. This region is found N-terminal to multiple copies of a C2H2 Zinc finger (IPR007087 from INTERPRO). This region has been shown to activate transcription when fused to a GAL4 DNA binding domain [].; GO: 0003677 DNA binding, 0046872 metal ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=24.98 E-value=49 Score=21.07 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=14.8
Q ss_pred CCCCCCCEEEEEEEeCCceeeeEecccccC
Q psy12855 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKR 31 (87)
Q Consensus 2 ~~~~~~p~v~i~~~~~~~~~~~~~t~~~~~ 31 (87)
+||.+.||.-|.-.-..++..|+|++.+++
T Consensus 294 RNGaASa~LqIdES~g~nRvlKQK~KKKRR 323 (330)
T PF04704_consen 294 RNGAASAYLQIDESLGANRVLKQKPKKKRR 323 (330)
T ss_pred cCcchhhheeeccccCcchhhccccccccC
Confidence 456666666664322223344555555444
No 166
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=24.30 E-value=83 Score=16.48 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=19.7
Q ss_pred CeeceEEEEEecCCCC---cccEEEEEEEE
Q psy12855 35 PVYNESFVFEVPADNL---DSVSLELLLLD 61 (87)
Q Consensus 35 P~~~~~~~f~~~~~~~---~~~~l~v~v~~ 61 (87)
..|.+++...+..+.+ -...|.+.+||
T Consensus 52 v~W~~~~~i~vt~e~l~kl~~h~i~~kiwD 81 (99)
T PF15084_consen 52 VSWTHTFNINVTKELLKKLYFHKITLKIWD 81 (99)
T ss_pred EEEEEEEEeccCHHHHHHHHcCeEEEEEEc
Confidence 6788888887665432 24679999998
No 167
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=22.59 E-value=48 Score=15.96 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=14.6
Q ss_pred CEEEEEEEeCCceeeeEecccccCCCCCeece
Q psy12855 8 PYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNE 39 (87)
Q Consensus 8 p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~ 39 (87)
..|.+.+.++|. ....+..+.+.++.+++
T Consensus 28 ~~V~i~i~~dG~---v~~~~i~~sSG~~~~D~ 56 (85)
T PF13103_consen 28 VTVRITIDPDGR---VISVRIVKSSGNPAFDA 56 (85)
T ss_dssp EEEEEEE-TTSB---EEEEEEEE--S-HHHHH
T ss_pred EEEEEEECCCCC---EEEEEEecCCCCHHHHH
Confidence 456666655654 33556666666777663
No 168
>KOG4428|consensus
Probab=22.22 E-value=3.1e+02 Score=19.81 Aligned_cols=60 Identities=17% Similarity=0.182 Sum_probs=36.2
Q ss_pred CCCCEEEEEEE-eCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCC
Q psy12855 5 ELDPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDR 64 (87)
Q Consensus 5 ~~~p~v~i~~~-~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~ 64 (87)
.++.|+.+.+. |..-+.+...|.+...+.+|+|=-...|.-....-....+...+||...
T Consensus 50 K~nt~va~sv~hp~~~~t~~s~tei~egt~~piFL~~~~f~~~~~in~~T~~kl~vydvkD 110 (813)
T KOG4428|consen 50 KPNTFVAVSVTHPQAFWTKHSQTEIIEGTNNPIFLSSIAFFQDSLINQMTQVKLSVYDVKD 110 (813)
T ss_pred CCCceEEEEeeccceeeeeccCceeeeccCCceeeeehhhhhhcchhhhhheeEEEEeecc
Confidence 45678877776 3333445566777888889988755454422222223457788887433
Done!