Query psy12855
Match_columns 87
No_of_seqs 110 out of 1106
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 21:31:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wfm_A Synaptotagmin XIII; C2 99.8 1.5E-19 5.1E-24 97.4 9.6 78 3-81 41-118 (138)
2 2b3r_A Phosphatidylinositol-4- 99.8 5.9E-20 2E-24 98.5 7.7 79 3-81 37-116 (134)
3 1w15_A Synaptotagmin IV; metal 99.8 3.6E-19 1.2E-23 97.1 10.9 78 3-80 48-125 (153)
4 3n5a_A Synaptotagmin-7; calciu 99.8 4.6E-19 1.6E-23 95.0 10.5 79 3-81 34-112 (138)
5 2z0u_A WW domain-containing pr 99.8 4.3E-20 1.5E-24 101.3 5.9 79 3-81 61-140 (155)
6 3fdw_A Synaptotagmin-like prot 99.8 3.8E-19 1.3E-23 96.6 8.5 78 3-80 42-119 (148)
7 1tjx_A Similar to synaptotagmi 99.8 1.6E-18 5.6E-23 95.1 10.9 78 3-80 43-120 (159)
8 2cm5_A Rabphilin-3A; protein t 99.8 1.3E-18 4.3E-23 96.2 9.9 79 3-81 55-133 (166)
9 1ugk_A Synaptotagmin IV, KIAA1 99.8 2.9E-18 1E-22 92.1 9.5 76 4-81 42-118 (138)
10 2bwq_A Regulating synaptic mem 99.8 1.6E-18 5.6E-23 92.1 7.8 79 3-81 36-117 (129)
11 2chd_A Rabphilin-3A, exophilin 99.8 9.7E-19 3.3E-23 94.4 6.6 79 3-81 47-126 (142)
12 3rdl_A Protein kinase C alpha 99.8 3.1E-18 1E-22 91.8 8.1 77 3-80 34-110 (137)
13 2dmg_A KIAA1228 protein; beta- 99.8 1.5E-18 5E-23 93.7 6.6 78 3-81 42-121 (142)
14 3f04_A Synaptotagmin-1; C2A, c 99.8 1.9E-18 6.6E-23 93.3 6.8 77 3-81 52-128 (143)
15 1a25_A CALB, protein kinase C 99.8 7.7E-18 2.6E-22 91.5 9.2 77 3-80 49-125 (149)
16 3fbk_A RGS3, RGP3, regulator o 99.8 5.9E-18 2E-22 92.4 8.1 77 3-80 44-121 (153)
17 2q3x_A Regulating synaptic mem 99.8 8.7E-18 3E-22 93.3 8.8 76 3-81 49-125 (171)
18 1rsy_A Synaptotagmin I; calciu 99.8 3.7E-18 1.2E-22 93.1 7.0 77 3-81 60-136 (152)
19 2r83_A Synaptotagmin-1; C2A-C2 99.7 3.2E-17 1.1E-21 96.8 11.3 79 3-81 168-246 (284)
20 2d8k_A Synaptotagmin VII; exoc 99.7 1E-17 3.5E-22 90.3 7.9 77 3-81 44-121 (141)
21 2enp_A B/K protein; C2 type 1, 99.7 1.9E-18 6.4E-23 93.7 5.0 76 4-81 52-127 (147)
22 1v27_A Regulating synaptic mem 99.7 2.6E-18 8.8E-23 92.5 3.9 79 3-81 39-120 (141)
23 3b7y_A E3 ubiquitin-protein li 99.7 1.4E-16 4.9E-21 86.8 10.5 76 3-81 38-114 (153)
24 2fk9_A Protein kinase C, ETA t 99.7 3.7E-17 1.3E-21 89.8 8.1 69 4-80 58-126 (157)
25 2dmh_A Myoferlin; beta-sandwic 99.7 5.6E-17 1.9E-21 87.2 8.1 72 4-80 25-97 (140)
26 1rh8_A Piccolo protein; beta-s 99.7 3.3E-18 1.1E-22 92.2 2.9 79 3-81 36-124 (142)
27 3m7f_B E3 ubiquitin-protein li 99.7 3.2E-16 1.1E-20 87.2 10.8 76 3-81 26-102 (176)
28 1rlw_A Phospholipase A2, CALB 99.7 1.2E-16 4.2E-21 84.5 8.5 72 4-80 25-96 (126)
29 3pyc_A E3 ubiquitin-protein li 99.7 2.1E-16 7.1E-21 84.3 7.4 71 3-80 23-96 (132)
30 3kwu_A MUNC13-1; calcium bindi 99.7 1E-15 3.6E-20 82.9 10.1 71 3-81 35-116 (148)
31 1gmi_A Protein kinase C, epsil 99.7 7.6E-16 2.6E-20 82.5 9.2 69 4-80 36-104 (136)
32 2r83_A Synaptotagmin-1; C2A-C2 99.7 3.9E-16 1.3E-20 92.1 8.7 77 3-81 37-113 (284)
33 2ep6_A MCTP2 protein; beta san 99.7 2E-16 6.9E-21 84.4 6.2 71 3-81 31-101 (133)
34 2nq3_A Itchy homolog E3 ubiqui 99.7 2.1E-15 7.2E-20 83.9 9.9 68 4-80 55-122 (173)
35 1wfj_A Putative elicitor-respo 99.7 5.5E-16 1.9E-20 82.9 7.0 71 3-81 28-99 (136)
36 1dqv_A Synaptotagmin III; beta 99.6 3E-17 1E-21 97.6 0.9 80 3-82 170-249 (296)
37 2cjt_A UNC-13 homolog A, MUNC1 99.6 2.3E-15 7.9E-20 80.4 7.5 68 3-81 20-88 (131)
38 1dqv_A Synaptotagmin III; beta 99.6 9.4E-16 3.2E-20 91.2 6.0 73 3-77 38-110 (296)
39 1djx_A PLC-D1, phosphoinositid 99.6 6.3E-15 2.1E-19 95.0 9.4 77 3-81 517-594 (624)
40 2cjs_A UNC-13 homolog A, MUNC1 99.6 6.5E-15 2.2E-19 81.6 7.6 68 3-81 29-97 (167)
41 3l9b_A Otoferlin; C2-domain, b 99.6 5.5E-14 1.9E-18 75.6 9.0 71 4-79 35-106 (144)
42 3nsj_A Perforin-1; pore formin 99.6 2.7E-14 9.3E-19 90.8 8.7 73 3-81 411-483 (540)
43 3jzy_A Intersectin 2; C2 domai 99.5 9.5E-14 3.2E-18 87.4 10.1 71 3-80 405-475 (510)
44 3pfq_A PKC-B, PKC-beta, protei 99.5 3.6E-14 1.2E-18 92.1 6.9 77 3-80 190-266 (674)
45 1cjy_A CPLA2, protein (cytosol 99.5 1.6E-13 5.5E-18 89.8 7.1 73 4-81 40-112 (749)
46 3qr0_A Phospholipase C-beta (P 99.3 1.2E-11 4.3E-16 81.7 8.9 73 3-81 664-741 (816)
47 3ohm_B 1-phosphatidylinositol- 99.3 1.9E-11 6.6E-16 81.3 8.4 72 4-81 740-815 (885)
48 2zkm_X 1-phosphatidylinositol- 99.3 2.7E-11 9.4E-16 80.0 8.2 73 3-81 692-769 (799)
49 3bxj_A RAS GTPase-activating p 99.0 4E-11 1.4E-15 75.6 -0.4 67 7-80 28-101 (483)
50 1yrk_A NPKC-delta, protein kin 98.6 3.3E-07 1.1E-11 48.2 7.1 66 5-79 26-92 (126)
51 2enj_A NPKC-theta, protein kin 98.4 8.3E-07 2.9E-11 47.3 5.3 67 5-80 31-98 (138)
52 3l4c_A Dedicator of cytokinesi 96.9 0.012 4.2E-07 33.8 8.1 60 22-81 77-140 (220)
53 1e7u_A Phosphatidylinositol 3- 95.7 0.083 2.8E-06 36.5 7.9 75 6-80 238-329 (961)
54 2wxf_A Phosphatidylinositol-4, 94.1 0.64 2.2E-05 32.3 8.7 75 6-80 235-323 (940)
55 3hhm_A Phosphatidylinositol-4, 92.9 0.71 2.4E-05 32.6 7.5 74 6-80 375-454 (1091)
56 2y3a_A Phosphatidylinositol-4, 86.7 1.1 3.6E-05 31.8 4.4 57 6-62 371-429 (1092)
57 2yrb_A Protein fantom; beta sa 52.2 27 0.00092 19.0 6.4 56 23-80 55-115 (156)
58 2wy3_B UL16, uncharacterized p 28.0 70 0.0024 16.7 4.0 28 57-84 35-62 (158)
59 3uaf_A TTR-52; beta barrel/san 22.5 84 0.0029 16.1 2.5 28 54-81 22-51 (117)
No 1
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.82 E-value=1.5e-19 Score=97.36 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=68.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.. ...+++|++++++.||.|||+|.|.+...++....|.++|||++.++++++||++.+++++.
T Consensus 41 ~g~sDPyv~v~l~~~~-~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l 118 (138)
T 1wfm_A 41 DGGCDCYVQGSVANRT-GSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118 (138)
T ss_dssp SSCCCEEEEEEEEETT-EEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSS
T ss_pred CCCcceEEEEEEEcCC-CcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence 4678999999997643 23478999999999999999999999877776679999999999999999999999998875
No 2
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.82 E-value=5.9e-20 Score=98.54 Aligned_cols=79 Identities=27% Similarity=0.429 Sum_probs=67.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+++....+++|++++++.||.|||+|.|. +...++....|.++|||++..+++++||++.+++++.
T Consensus 37 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 116 (134)
T 2b3r_A 37 GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116 (134)
T ss_dssp SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGS
T ss_pred CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhc
Confidence 467899999999876545568999999999999999999999 7765544569999999999998999999999998764
No 3
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.82 E-value=3.6e-19 Score=97.14 Aligned_cols=78 Identities=45% Similarity=0.695 Sum_probs=68.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++++.+++....+++|++++++.||.|||+|.|.+...++....|.|+|||++..+++++||++.+++++
T Consensus 48 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 48 SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp --CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 466899999999877666668899999999999999999999988777667899999999999899999999999987
No 4
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.81 E-value=4.6e-19 Score=95.05 Aligned_cols=79 Identities=43% Similarity=0.771 Sum_probs=69.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.+....+++|++++++.||.|||+|.|.+....+....|.++|||++..+++++||++.+++++.
T Consensus 34 ~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~ 112 (138)
T 3n5a_A 34 GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSG 112 (138)
T ss_dssp TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSC
T ss_pred CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccC
Confidence 4578999999998776666789999999999999999999998877666678999999999998999999999999863
No 5
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.81 E-value=4.3e-20 Score=101.31 Aligned_cols=79 Identities=16% Similarity=0.080 Sum_probs=67.5
Q ss_pred CCCCCCEEEEEEEeCC-ceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~-~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.. ....+++|++++++.||.|||+|.|.+...++....|.++|||++..+++++||++.+++++.
T Consensus 61 ~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l 140 (155)
T 2z0u_A 61 QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140 (155)
T ss_dssp SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTS
T ss_pred CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 5778999999997632 334479999999999999999999998766555578999999999999999999999999864
No 6
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.80 E-value=3.8e-19 Score=96.63 Aligned_cols=78 Identities=31% Similarity=0.497 Sum_probs=68.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++++.+......+++|++++++.+|.|||+|.|.+...++....|.++|||++..+++++||++.+++++
T Consensus 42 ~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~ 119 (148)
T 3fdw_A 42 KKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119 (148)
T ss_dssp TTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHH
T ss_pred CCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEccc
Confidence 467899999999866554568999999999999999999999988777667899999999999899999999998764
No 7
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.80 E-value=1.6e-18 Score=95.08 Aligned_cols=78 Identities=46% Similarity=0.740 Sum_probs=68.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++++.+.+....+++|++++++.||.|||+|.|.+...++....|.++|||++..+.+++||++.++++.
T Consensus 43 ~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 43 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNS 120 (159)
T ss_dssp TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTC
T ss_pred CCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCC
Confidence 367899999999876655668999999999999999999999877666556899999999999899999999999985
No 8
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.79 E-value=1.3e-18 Score=96.15 Aligned_cols=79 Identities=33% Similarity=0.491 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+......+++|++++++.||.|||+|.|.+...++....|.|+|||++..+++++||++.+++++.
T Consensus 55 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~ 133 (166)
T 2cm5_A 55 NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 133 (166)
T ss_dssp TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccC
Confidence 4678999999997654445689999999999999999999999776665679999999999998999999999999864
No 9
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.78 E-value=2.9e-18 Score=92.13 Aligned_cols=76 Identities=29% Similarity=0.555 Sum_probs=65.9
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+.+||||++++.+++. .+++|++++++.||.|||+|.|. +...++....|.++|||++..+++++||++.+++++.
T Consensus 42 ~~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l 118 (138)
T 1ugk_A 42 MTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118 (138)
T ss_dssp TBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTC
T ss_pred CCCCCEEEEEEecCCC--ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHc
Confidence 6789999999975432 48999999999999999999996 7766666679999999999998999999999998764
No 10
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.77 E-value=1.6e-18 Score=92.06 Aligned_cols=79 Identities=27% Similarity=0.454 Sum_probs=62.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEe-cCCCCcccEEEEEEEEcCCCCC--CeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNLDSVSLELLLLDWDRVTK--NEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~-~~~~~~~~~l~v~v~~~~~~~~--~~~lG~~~~~l~ 79 (87)
++.+||||++++.+++....+++|++++++.+|.|||+|.|.+ ...++....|.++|||++..+. +++||++.++++
T Consensus 36 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~ 115 (129)
T 2bwq_A 36 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115 (129)
T ss_dssp SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGG
T ss_pred CCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEcc
Confidence 3568999999998765456689999999999999999999994 4444455799999999999876 899999999987
Q ss_pred Cc
Q psy12855 80 SS 81 (87)
Q Consensus 80 ~~ 81 (87)
+.
T Consensus 116 ~l 117 (129)
T 2bwq_A 116 TA 117 (129)
T ss_dssp GC
T ss_pred cc
Confidence 64
No 11
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.77 E-value=9.7e-19 Score=94.37 Aligned_cols=79 Identities=29% Similarity=0.405 Sum_probs=66.2
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+......+++|++++++.+|.|||+|.|. +...++....|.|+|||++..+++++||++.+++++.
T Consensus 47 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l 126 (142)
T 2chd_A 47 NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126 (142)
T ss_dssp TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGC
T ss_pred CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 467899999999765444568999999999999999999998 6554443468999999999998899999999998753
No 12
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.77 E-value=3.1e-18 Score=91.77 Aligned_cols=77 Identities=36% Similarity=0.578 Sum_probs=65.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
++.+||||++++.+......+++|++++++.+|.|||+|.|.+...+.. ..|.++|||++..+++++||++.+++++
T Consensus 34 ~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~-~~l~i~v~d~d~~~~~~~iG~~~i~l~~ 110 (137)
T 3rdl_A 34 NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGVSE 110 (137)
T ss_dssp TSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCEEEEEEEEECCGGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred CCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCCcccEEEEEcCchhcC-CEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 4678999999997665556689999999999999999999998765443 5899999999999999999999998764
No 13
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=93.67 Aligned_cols=78 Identities=32% Similarity=0.533 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCC--CeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK--NEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~--~~~lG~~~~~l~~ 80 (87)
++ +||||++++.+++....+++|++++++.||.|||+|.|.+...++....|.|+|||++..+. +++||++.+++++
T Consensus 42 ~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~ 120 (142)
T 2dmg_A 42 DG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALAS 120 (142)
T ss_dssp TC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCC
T ss_pred CC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEeccc
Confidence 35 89999999986554456899999999999999999999987655555689999999998753 4799999999876
Q ss_pred c
Q psy12855 81 S 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 121 ~ 121 (142)
T 2dmg_A 121 E 121 (142)
T ss_dssp S
T ss_pred c
Confidence 4
No 14
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.76 E-value=1.9e-18 Score=93.29 Aligned_cols=77 Identities=39% Similarity=0.628 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.+. .+++|++++++.||.|||+|.|.+...++....|.++|||++..+++++||++.+++++.
T Consensus 52 ~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l 128 (143)
T 3f04_A 52 GGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128 (143)
T ss_dssp GBCCCEEEEEEEESCCS--CCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGC
T ss_pred CCCcCcEEEEEEECCCC--ccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHc
Confidence 35789999999975533 378999999999999999999998766555568999999999999999999999998653
No 15
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.76 E-value=7.7e-18 Score=91.55 Aligned_cols=77 Identities=32% Similarity=0.515 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.+||||++++.+......+++|++++++.+|.|||+|.|.+...+.. ..|.|+|||++..+++++||++.+++.+
T Consensus 49 ~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~L~i~V~d~d~~~~~~~iG~~~i~l~~ 125 (149)
T 1a25_A 49 NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISE 125 (149)
T ss_dssp TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGG-CEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred CCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCC-CEEEEEEEECCCCCCCCEEEEEEEEHHH
Confidence 3568999999997654445689999999999999999999998765443 5899999999999899999999998754
No 16
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.75 E-value=5.9e-18 Score=92.42 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=65.4
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCC-CeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK-NEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~-~~~lG~~~~~l~~ 80 (87)
++.+||||++++.+......+++|++++++.||.|||+|.|.+...++. ..|.|+|||++..++ +++||++.+++++
T Consensus 44 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~ 121 (153)
T 3fbk_A 44 PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKS 121 (153)
T ss_dssp SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHH
T ss_pred CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHH
Confidence 3678999999998765455689999999999999999999998766555 369999999998876 8999999998764
No 17
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.75 E-value=8.7e-18 Score=93.28 Aligned_cols=76 Identities=32% Similarity=0.531 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEE-EcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL-DWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~-~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.+....+++|++++++.||.|||+|.|.+... ...|.|+|| |++..+++++||++.+++++.
T Consensus 49 ~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l 125 (171)
T 2q3x_A 49 KSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ---GKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125 (171)
T ss_dssp -CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCT---TEEEEEEEEEECSTTCSSEEEEEEEECGGGS
T ss_pred CCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCC---CCEEEEEEEEcCCCCCCCCEEEEEEEEHHHc
Confidence 4778999999998776666789999999999999999999998543 368999999 999998999999999998764
No 18
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.75 E-value=3.7e-18 Score=93.13 Aligned_cols=77 Identities=39% Similarity=0.628 Sum_probs=65.1
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+.+. .+++|++++++.||.|||+|.|.+...++....|.++|||++..+++++||++.+++++.
T Consensus 60 ~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l 136 (152)
T 1rsy_A 60 GGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136 (152)
T ss_dssp TSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGC
T ss_pred CCCcCeEEEEEEEcCCC--ceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhc
Confidence 36689999999975432 478999999999999999999998765544568999999999998999999999998764
No 19
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.75 E-value=3.2e-17 Score=96.78 Aligned_cols=79 Identities=46% Similarity=0.737 Sum_probs=70.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+++....+++|++++++.||.|||+|.|.+..+++....|.|+|||++..+.+++||++.++++..
T Consensus 168 ~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 246 (284)
T 2r83_A 168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 246 (284)
T ss_dssp TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence 3668999999998766666689999999999999999999999887776678999999999999999999999999763
No 20
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=90.29 Aligned_cols=77 Identities=36% Similarity=0.575 Sum_probs=63.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEe-cCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEV-PADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~-~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.++.. .+++|++++++.||.|||+|.|.+ +..++....|.++|||++..+++++||++.+++++.
T Consensus 44 ~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l 121 (141)
T 2d8k_A 44 SGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121 (141)
T ss_dssp SSCCCEEEEEEEESCCS--SEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTS
T ss_pred CCCCCcEEEEEEECCCC--ccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhh
Confidence 46689999999975432 378999999999999999999984 333333468999999999998899999999998764
No 21
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=93.74 Aligned_cols=76 Identities=29% Similarity=0.461 Sum_probs=64.7
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+.+||||++++.++.. .+++|++++++.+|.|||+|.|.+...++....|.|+|||++.++++++||++.+++++.
T Consensus 52 ~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l 127 (147)
T 2enp_A 52 AHSNPYVKICLLPDQK--NSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127 (147)
T ss_dssp CCCCCEEEEEEETCCS--SCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTS
T ss_pred CCCCcEEEEEEEeCCC--cceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhc
Confidence 4689999999975432 378999999999999999999998765544568999999999998899999999998764
No 22
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.73 E-value=2.6e-18 Score=92.46 Aligned_cols=79 Identities=28% Similarity=0.476 Sum_probs=65.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCC--CeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTK--NEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~--~~~lG~~~~~l~ 79 (87)
++.+||||++++.++.....+++|++++++.+|.|||+|.|. +...++....|.|+|||++..+. +++||++.++++
T Consensus 39 ~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~ 118 (141)
T 1v27_A 39 GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118 (141)
T ss_dssp SCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGG
T ss_pred CCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEcc
Confidence 366899999998665444568899999999999999999999 55455555799999999999876 899999999987
Q ss_pred Cc
Q psy12855 80 SS 81 (87)
Q Consensus 80 ~~ 81 (87)
+.
T Consensus 119 ~l 120 (141)
T 1v27_A 119 TA 120 (141)
T ss_dssp GC
T ss_pred cc
Confidence 63
No 23
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.72 E-value=1.4e-16 Score=86.76 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=62.6
Q ss_pred CCCCCCEEEEEEEeCCc-eeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQ-RVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~-~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+... ...+++|++++++.||.|||+|.|.+... ...|.++|||++..+++++||++.+++++.
T Consensus 38 ~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l 114 (153)
T 3b7y_A 38 LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114 (153)
T ss_dssp ---CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEEEECCSSSCCEEEEEEEEECCSC
T ss_pred CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEEEECCCCcCCCeeEEEEEEHHHc
Confidence 35789999999975432 34588999999999999999999998754 358999999999998999999999998754
No 24
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=89.77 Aligned_cols=69 Identities=25% Similarity=0.308 Sum_probs=58.8
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++.+ ++. ...+|++++++.||.|||+|.|.+... ..|.++|||++.++.+++||.+.+++++
T Consensus 58 g~sDPYv~v~l--~~~--~~~kT~v~~ktlnP~WNE~F~f~v~~~----~~L~~~V~D~d~~~~dd~iG~~~i~l~~ 126 (157)
T 2fk9_A 58 QLLDPYLTVSV--DQV--RVGQTSTKQKTNKPTYNEEFCANVTDG----GHLELAVFHETPLGYDHFVANCTLQFQE 126 (157)
T ss_dssp CCCCEEEEEEE--TTE--EEEECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECCSSSSCEEEEEEEEEHHH
T ss_pred CCCCeEEEEEE--CCE--eeEEeeecCCCCCCccCcEEEEEcCCC----CEEEEEEEECCCCCCCCEEEEEEEEHHH
Confidence 56899999998 322 257899999999999999999998542 4899999999999999999999998754
No 25
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=87.21 Aligned_cols=72 Identities=31% Similarity=0.391 Sum_probs=61.5
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++++. +. +++|++++++.+|.|||+|.|.+..... ....|.+.|||++..+.+++||++.+++.+
T Consensus 25 g~~dpyv~v~~~--~~---~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~ 97 (140)
T 2dmh_A 25 GKPDPIVSVIFK--DE---KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKD 97 (140)
T ss_dssp SCCCEEEEEECS--SC---EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGG
T ss_pred CCCCeEEEEEEC--CE---eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 578999999983 22 7899999999999999999999876433 246899999999999889999999999865
No 26
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.71 E-value=3.3e-18 Score=92.22 Aligned_cols=79 Identities=29% Similarity=0.513 Sum_probs=64.0
Q ss_pred CCCCCCEEEEEEEeCCce---------eeeEecccccCCCCCeeceEEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeE
Q psy12855 3 DNELDPYVKVYLLYKGQR---------VAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIF 72 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~---------~~~~~t~~~~~~~~P~~~~~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG 72 (87)
+|.+||||++++.+.... ..+++|++++++.||.|||+|.|. +...++....|.++|||++..+++++||
T Consensus 36 ~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG 115 (142)
T 1rh8_A 36 NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLG 115 (142)
T ss_dssp SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEE
T ss_pred CCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEE
Confidence 467899999998543211 236899999999999999999997 6554444568999999999998999999
Q ss_pred EEEEecCCc
Q psy12855 73 FFFFSSSSS 81 (87)
Q Consensus 73 ~~~~~l~~~ 81 (87)
++.+++++.
T Consensus 116 ~~~i~l~~l 124 (142)
T 1rh8_A 116 EVLIDLSST 124 (142)
T ss_dssp EEEEETTSC
T ss_pred EEEEecccc
Confidence 999999864
No 27
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.71 E-value=3.2e-16 Score=87.21 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=60.8
Q ss_pred CCCCCCEEEEEEEeCC-ceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKG-QRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~-~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.... ....+++|++++++.+|.||++|.|.+... ...|.|.|||++.++.+++||++.++|.+.
T Consensus 26 ~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l 102 (176)
T 3m7f_B 26 LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVFDENRLTRDDFLGQVDVPLYPL 102 (176)
T ss_dssp CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEEEECC----CEEEEEEEEESCSC
T ss_pred CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 4678999999997533 233578999999999999999999998754 258999999999998999999999998864
No 28
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.71 E-value=1.2e-16 Score=84.48 Aligned_cols=72 Identities=31% Similarity=0.485 Sum_probs=60.0
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++++.+.. ..+++|++++++.||.|||+|.|.+.... ...|.+.|||++..+ +++||++.+++++
T Consensus 25 g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~~--~~~l~i~V~d~d~~~-~~~iG~~~i~l~~ 96 (126)
T 1rlw_A 25 DTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSS 96 (126)
T ss_dssp CCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEEECTTS--CCEEEEEEEECCSSC-CEEEEEEEEEGGG
T ss_pred CCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEEEecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHH
Confidence 678999999984321 24889999999999999999999985443 358999999999874 8899999999864
No 29
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.68 E-value=2.1e-16 Score=84.32 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=58.8
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCC---CeeeEEEEEecC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTK---NEKIFFFFFSSS 79 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~---~~~lG~~~~~l~ 79 (87)
.+.+||||++++.+. ..+++|++++++.||.|||+|.|.+... ..|.++|||++..++ +++||++.++++
T Consensus 23 ~g~sDpyv~v~~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~l~~~v~d~d~~~~~~~d~~lG~~~i~l~ 95 (132)
T 3pyc_A 23 FRLPDPFAKIVVDGS---GQCHSTDTVKNTLDPKWNQHYDLYVGKT----DSITISVWNHKKIHKKQGAGFLGCVRLLSN 95 (132)
T ss_dssp TCCCCEEEEEEETTT---CCEEECCCCSSCSSCEEEEEEEEEEETT----CCEEEEEEEGGGTTSSTTTTEEEEEEECHH
T ss_pred CCCcCeEEEEEECCC---CceEECCccCCCCCCCccCEEEEEeCCC----CEEEEEEEECCCCCCCCCCCceEEEEEeHH
Confidence 367899999998432 2488999999999999999999998654 259999999998876 789999999765
Q ss_pred C
Q psy12855 80 S 80 (87)
Q Consensus 80 ~ 80 (87)
+
T Consensus 96 ~ 96 (132)
T 3pyc_A 96 A 96 (132)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.68 E-value=1e-15 Score=82.93 Aligned_cols=71 Identities=27% Similarity=0.369 Sum_probs=60.6
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC-----------CCCeee
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV-----------TKNEKI 71 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~-----------~~~~~l 71 (87)
++.+||||.+++ .. .+++|++++++.||.|+|+|.|.+.... ..|.++|||++.. +.+++|
T Consensus 35 ~g~~dpyv~v~~--~~---~~~kT~~~~~t~nP~Wne~f~f~v~~~~---~~l~~~v~d~d~~~~~~~~~~~~~~~~~~l 106 (148)
T 3kwu_A 35 TGSSDPYVTVQV--GK---TKKRTKTIYGNLNPVWEENFHFECHNSS---DRIKVRVLDEDDDIKSRVKQRFKRESDDFL 106 (148)
T ss_dssp TSCCCEEEEEEE--TT---EEEECCCCCSCSSCEEEEEEEEEECSTT---CEEEEEEEECCCSHHHHHHTTTSSCSSEEE
T ss_pred CCCcCeEEEEEE--CC---EEEECCccCCCCCCCcccEEEEEecCCC---CEEEEEEEECCCCccccccccccCCCCccE
Confidence 467899999998 32 2789999999999999999999986542 5899999999885 788999
Q ss_pred EEEEEecCCc
Q psy12855 72 FFFFFSSSSS 81 (87)
Q Consensus 72 G~~~~~l~~~ 81 (87)
|++.+++++.
T Consensus 107 G~~~i~l~~l 116 (148)
T 3kwu_A 107 GQTIIEVRTL 116 (148)
T ss_dssp EEEEEEGGGC
T ss_pred EEEEEEHHHC
Confidence 9999998764
No 31
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.67 E-value=7.6e-16 Score=82.54 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=58.2
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||.+.+ ++. ...+|+++.++.||.|||+|.|.+... ..|.++|||++..+++++||.+.+++++
T Consensus 36 ~~~DPyv~v~l--~~~--~~~~T~~~~~t~nP~WnE~f~f~v~~~----~~L~~~V~d~d~~~~dd~iG~~~i~l~~ 104 (136)
T 1gmi_A 36 FLLDPYIALNV--DDS--RIGQTATKQKTNSPAWHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEE 104 (136)
T ss_dssp CCCCEEEEEEE--TTE--EEEECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECCSSSSCEEEEEEEEEHHH
T ss_pred cCcCcEEEEEE--CCe--EeeeeeEECCCcCCccCCEEEEEecCC----CEEEEEEEeCCCCCCCCEEEEEEEEHHH
Confidence 34899999998 322 356899999999999999999998643 5899999999999999999999998753
No 32
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.67 E-value=3.9e-16 Score=92.11 Aligned_cols=77 Identities=39% Similarity=0.627 Sum_probs=65.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++++.+... .+++|++++++.||.|||+|.|.+..+++....|.+.|||++.++.+++||++.+++.+.
T Consensus 37 ~~~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l 113 (284)
T 2r83_A 37 GGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113 (284)
T ss_dssp SSSCCEEEEEEEETCTT--SCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGC
T ss_pred CCCCCeEEEEEEEcCCC--ceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhc
Confidence 46789999999875432 377899999999999999999998776665579999999999998899999999988653
No 33
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.66 E-value=2e-16 Score=84.44 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=60.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++ .+. +++|++++++.+|.|||+|.|.+... ...|.++|||++..+++++||++.+++++.
T Consensus 31 ~g~~dpyv~v~~--~~~---~~kT~~~~~t~nP~wne~f~f~~~~~---~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l 101 (133)
T 2ep6_A 31 SGKSDPFCLLEL--GND---RLQTHTVYKNLNPEWNKVFTFPIKDI---HDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 101 (133)
T ss_dssp SSCCCEEEEEEE--TTE---EEECCCCSSCSSCCCCEEEEEEESCT---TCEEEEEEEEEETTEEEEECCBCEEEGGGC
T ss_pred CCCcCeEEEEEE--CCE---EEEeeeecCCCCCccccEEEEEecCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHc
Confidence 367899999998 332 67999999999999999999998643 258999999999988899999999988653
No 34
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.65 E-value=2.1e-15 Score=83.92 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=59.0
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+.+||||++++ .+ .+++|++++++.+|.|||+|.|.+.. ...|.|.|||++.++.+++||++.+++++
T Consensus 55 ~~sDPYv~v~~--~~---~~~kT~v~~~tlnP~Wne~f~f~v~~----~~~L~~~V~D~d~~~~dd~lG~~~i~l~~ 122 (173)
T 2nq3_A 55 FGPSPYVEVTV--DG---QSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQTLKSDVLLGTAALDIYE 122 (173)
T ss_dssp CCCCEEEEEEE--TT---EEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred CCCCeEEEEEE--CC---EEeEccccCCCCCCeECCEEEEEeCC----CCEEEEEEEECCCCCCCceEEEEEEEHHH
Confidence 34899999998 33 48899999999999999999999853 35899999999999899999999998764
No 35
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.65 E-value=5.5e-16 Score=82.94 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEeccccc-CCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~-~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.+.+||||++++.+. +++|++.+ ++.+|.|||+|.|.+.. ....|.++|||++..+++++||++.+++++.
T Consensus 28 ~g~~dpyv~v~~~~~-----~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l 99 (136)
T 1wfj_A 28 LNNMDPYVQLTCRTQ-----DQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDKDVGTEDDAVGEATIPLEPV 99 (136)
T ss_dssp SCSSCCCEEEESSSC-----EEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCSSSCTTTCCSEEEEEESHHH
T ss_pred CCCcCceEEEEECCc-----cceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEECCCCCCCceEEEEEEEHHHh
Confidence 367899999998322 67899987 89999999999999875 2358999999999998999999999998653
No 36
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.63 E-value=3e-17 Score=97.63 Aligned_cols=80 Identities=38% Similarity=0.624 Sum_probs=68.0
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCce
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSF 82 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~~ 82 (87)
+|.+||||++++.++++...+++|++++++.||.|||+|.|.+....+....|.++|||++..+++++||.+.+++++.+
T Consensus 170 ~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 170 TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred CCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCC
Confidence 35679999999865444456889999999999999999999987766655689999999999999999999999988653
No 37
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.62 E-value=2.3e-15 Score=80.42 Aligned_cols=68 Identities=13% Similarity=0.271 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEeccc-ccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHV-KKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~-~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++. .. ..+|.. ..++.||.|||+|.|.+... ...|.++|||++ .+.+++||++.+++++.
T Consensus 20 ~g~~DPYv~v~--~~-----~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l 88 (131)
T 2cjt_A 20 QEKFNTYVTLK--VQ-----NVKSTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTI 88 (131)
T ss_dssp GGGCEEEEEEE--ET-----TEEEECCCEESSSCEEEEEEEEEECCC---SSEEEEEEEECC-SSCEEEEEEEEEEGGGS
T ss_pred CCCcCeEEEEE--ec-----CEEEeEecCCCCCceECCEEEEEEeCC---CCeEEEEEEECC-CCCCCeEEEEEEEHHHh
Confidence 46689999998 22 234444 45689999999999998743 247999999999 88899999999998763
No 38
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.61 E-value=9.4e-16 Score=91.20 Aligned_cols=73 Identities=37% Similarity=0.651 Sum_probs=62.5
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
++.+||||++++.+++. .+++|++++++.||.|+|+|.|.+...++....|.+.|||++.++++++||++.++
T Consensus 38 ~g~~dPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~ 110 (296)
T 1dqv_A 38 NGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 110 (296)
T ss_dssp TSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECC
T ss_pred CCCcCeEEEEEEEcCCC--eeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEec
Confidence 46789999999865433 47899999999999999999999877666556899999999999999999999985
No 39
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.60 E-value=6.3e-15 Score=95.03 Aligned_cols=77 Identities=26% Similarity=0.352 Sum_probs=64.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCC-CCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRT-LNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~-~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++.+.+......+++|++++++ .||.|||+|.|.+..+++. .|.|.|||++..+.+++||++.+++++.
T Consensus 517 ~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~--~L~~~V~D~D~~~~dd~iG~~~ipl~~L 594 (624)
T 1djx_A 517 NSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSL 594 (624)
T ss_dssp SSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGC--EEEEEEEECCSSSCCEEEEEEEEEGGGB
T ss_pred cCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCC--EEEEEEEEcCCCCCCceeEEEEEEHHHc
Confidence 467899999998654334457899998887 9999999999998766543 8999999999998999999999998763
No 40
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.59 E-value=6.5e-15 Score=81.56 Aligned_cols=68 Identities=12% Similarity=0.253 Sum_probs=54.1
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccc-cCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVK-KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~-~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
++.+||||++. .. ..+|++. .++.||.|||+|.|.+... ...|.++|||++ ...+++||++.++|++.
T Consensus 29 ~g~~DPYV~v~--~~-----~~kt~~~~~~t~nP~WnE~f~f~v~~~---~~~L~~~V~D~d-~~~dd~iG~~~i~L~~l 97 (167)
T 2cjs_A 29 QEKFNTYVTLK--VQ-----NVESTTIAVRGSQPSWEQDFMFEINRL---DLGLTVEVWNKG-LIWDTMVGTVWIPLRTI 97 (167)
T ss_dssp GGGCEEEEEEE--ET-----TEEEECCCEESSSCEEEEEEEEECCCT---TSEEEEEEEECC-SSCCEEEEEEEEEGGGS
T ss_pred CCCCCeEEEEE--ec-----ceEEEEecCCCCCCCCCCEEEEEeeCC---CCEEEEEEEECC-CCCCceEEEEEEEHHHh
Confidence 35689999998 22 3345554 4689999999999998743 247999999999 78899999999998764
No 41
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.56 E-value=5.5e-14 Score=75.56 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=62.1
Q ss_pred CCCCCEEEEEEEeCCceeeeEeccccc-CCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKK-RTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~-~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
+.+||++++.+ .+ .+++|+.++ ++.+|.|||.|.|.+..+...+..|.+.|++++.++++.+||.+.++|.
T Consensus 35 g~~Dp~akv~F--Rg---~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq 106 (144)
T 3l9b_A 35 GRADRIAKVTF--RG---QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQ 106 (144)
T ss_dssp SCEEEEEEEEE--TT---EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESH
T ss_pred CCCCCeEEEEE--ec---cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhH
Confidence 46789999988 33 389999997 6999999999999988765567799999999999999999999999874
No 42
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.55 E-value=2.7e-14 Score=90.78 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=60.3
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
.|.+||||++.+ .+ . +++|++++++.||.|||+|.|.+..... ...|.|.|||++..+.+++||++.++|...
T Consensus 411 ~g~sDPYV~v~l--~~-~--~~kTkvik~tlNP~Wne~f~f~~~~~~~-~~~L~~~V~D~D~~~~dD~LG~~~~~L~~g 483 (540)
T 3nsj_A 411 TTATDAYLKVFF--GG-Q--EFRTGVVWNNNNPRWTDKMDFENVLLST-GGPLRVQVWDADYGWDDDLLGSCDRSPHSG 483 (540)
T ss_dssp CSCCCEEEEEEE--TT-E--EEECCCBCSCSSCBCCCCEEEEEEETTT-CCCEEEEEEECCSSSCCEEEEEEEECCCSE
T ss_pred CCCcCeEEEEEE--CC-E--eeeeeeecCCCCCCCCeEEEEEEecCCC-CCEEEEEEEECCCCCCCCEEEEEEEEeeCC
Confidence 467899999998 33 2 6999999999999999999998532111 357999999999998999999999998853
No 43
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.54 E-value=9.5e-14 Score=87.42 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=60.7
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+|.+||||++++ .+ .+++|++++++.||.|+++|.|.+.... ...|.++|||++..+++++||++.+++++
T Consensus 405 ~~~sdpyv~v~~--~~---~~~~T~~~~~t~nP~w~e~f~f~~~~~~--~~~l~~~v~d~d~~~~~d~lG~~~~~l~~ 475 (510)
T 3jzy_A 405 NGKSNPYCEISM--GS---QSYTTRTIQDTLNPKWNFNCQFFIKDLY--QDVLCLTLFDRDQFSPDDFLGRTEIPVAK 475 (510)
T ss_dssp TSCCCEEEEEEE--TT---EEEECCCCSSCSSCEEEEEEEEEESCTT--TCEEEEEEEECCSSSSCCEEEEEEEEHHH
T ss_pred CCCCCeEEEEEE--CC---eeccCCccCCCCCCccCceEEEEecCCC--CCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 467899999998 32 2789999999999999999999986443 35899999999999999999999998754
No 44
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.51 E-value=3.6e-14 Score=92.08 Aligned_cols=77 Identities=32% Similarity=0.524 Sum_probs=66.9
Q ss_pred CCCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
+|.+||||++.+.+......+++|++++++.||.|||+|.|.+...+.. ..|.++|||++..++++++|.+.+++++
T Consensus 190 ~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~-~~L~v~v~d~d~~~~dd~iG~~~i~l~~ 266 (674)
T 3pfq_A 190 NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISE 266 (674)
T ss_dssp TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTT-CEEEEEEEECCSSSCCEECCBCCCBTTH
T ss_pred ccccCcccccccccCccccccccccccccccCCCccceeeeecccCCcc-ceeeeEEeecccccccccccccccchhh
Confidence 4678999999998776666689999999999999999999998766544 5799999999999999999999988764
No 45
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.46 E-value=1.6e-13 Score=89.81 Aligned_cols=73 Identities=30% Similarity=0.475 Sum_probs=61.4
Q ss_pred CCCCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCCc
Q psy12855 4 NELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~~ 81 (87)
+.+||||++++.+. ...+++|++++++.+|.|||+|.|.+.... ...|.++|||++..+ +++||++.+++++.
T Consensus 40 g~sDPYV~V~l~~~--~~~k~kTkvik~tlNPvWNEtF~F~v~~~~--~~~L~~~V~D~D~~~-ddfIG~v~I~L~~L 112 (749)
T 1cjy_A 40 DTPDPYVELFISTT--PDSRKRTRHFNNDINPVWNETFEFILDPNQ--ENVLEITLMDANYVM-DETLGTATFTVSSM 112 (749)
T ss_dssp CCCCEEEEEECTTS--TTCCEECCCCTTCSSCEEEEEEEEEECTTS--CCBCEEEEEECCSSS-CEEEEEECCBSTTS
T ss_pred CCcCeEEEEEEecC--CCCeEecceEcCCCCCeeeeEEEEEecCCC--CCEEEEEEEECCCCC-CceeEEEEEEHHHc
Confidence 67899999998432 224889999999999999999999987643 347999999999998 99999999998753
No 46
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.32 E-value=1.2e-11 Score=81.70 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=57.5
Q ss_pred CCCCCCEEEEEEEeCCce--eeeEecccccC-CCCCeeceE-EEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 3 DNELDPYVKVYLLYKGQR--VAKKKTHVKKR-TLNPVYNES-FVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~~~--~~~~~t~~~~~-~~~P~~~~~-~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
+...||||++.+.+.... ..+++|+++.+ +.||.|||+ |.|. +..+++. .|.+.|||++ ++++|++.++
T Consensus 664 ~~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela--~Lrf~V~D~d----ddfiG~~~ip 737 (816)
T 3qr0_A 664 DKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRIIVSEEN----GKFIGHRVMP 737 (816)
T ss_dssp SSCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGC--EEEEEEEETT----SCEEEEEEEE
T ss_pred CCCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCcc--EEEEEEEecC----CCeeeEEEEE
Confidence 345799999998743222 25789999876 599999997 9998 7666554 8999999974 6899999999
Q ss_pred cCCc
Q psy12855 78 SSSS 81 (87)
Q Consensus 78 l~~~ 81 (87)
+++.
T Consensus 738 L~~L 741 (816)
T 3qr0_A 738 LDGI 741 (816)
T ss_dssp STTC
T ss_pred HHHc
Confidence 8864
No 47
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.28 E-value=1.9e-11 Score=81.30 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=56.4
Q ss_pred CCCCCEEEEEEEeCC-ceeeeEecccccC-CCCCeece-EEEEE-ecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 4 NELDPYVKVYLLYKG-QRVAKKKTHVKKR-TLNPVYNE-SFVFE-VPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 4 ~~~~p~v~i~~~~~~-~~~~~~~t~~~~~-~~~P~~~~-~~~f~-~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
...||||++.+.+.. ....+++|+++.+ +.||.||| +|.|. +..+++. .|.|.|||++ ++++|++.++++
T Consensus 740 ~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela--~Lrf~V~D~d----ddfiG~~~lpL~ 813 (885)
T 3ohm_B 740 RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLA--SLRIAAFEEG----GKFVGHRILPVS 813 (885)
T ss_dssp SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGC--EEEEEEEETT----TEEEEEEEEETT
T ss_pred cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcC--EEEEEEEcCC----ccEEeeEEEEHH
Confidence 457999999997422 2223579999876 59999999 69998 6555544 8999999986 789999999988
Q ss_pred Cc
Q psy12855 80 SS 81 (87)
Q Consensus 80 ~~ 81 (87)
+.
T Consensus 814 ~L 815 (885)
T 3ohm_B 814 AI 815 (885)
T ss_dssp TC
T ss_pred Hc
Confidence 64
No 48
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.26 E-value=2.7e-11 Score=80.05 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEEEeCC-ceeeeEecc-cccC-CCCCeece-EEEE-EecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEe
Q psy12855 3 DNELDPYVKVYLLYKG-QRVAKKKTH-VKKR-TLNPVYNE-SFVF-EVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFS 77 (87)
Q Consensus 3 ~~~~~p~v~i~~~~~~-~~~~~~~t~-~~~~-~~~P~~~~-~~~f-~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~ 77 (87)
++..||||++.+.+.. ....+++|+ ++.+ +.||.||| +|.| .+..+++. .|.+.|||++ ++++|++.++
T Consensus 692 ~~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~--~Lr~~V~D~d----~d~iG~~~ip 765 (799)
T 2zkm_X 692 ERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRVAVMEEG----NKFLGHRIIP 765 (799)
T ss_dssp SSCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEEEEEETT----TEEEEEEEEE
T ss_pred ccCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCcc--EEEEEEEEeC----CCccceEeee
Confidence 3468999999997432 222367899 7654 69999999 7999 78666655 8999999986 6899999999
Q ss_pred cCCc
Q psy12855 78 SSSS 81 (87)
Q Consensus 78 l~~~ 81 (87)
+++.
T Consensus 766 l~~L 769 (799)
T 2zkm_X 766 INAL 769 (799)
T ss_dssp GGGB
T ss_pred hhhc
Confidence 8654
No 49
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=98.98 E-value=4e-11 Score=75.60 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=5.8
Q ss_pred CCEEEEEEEeCCceeeeEecccccCC---CCCeeceEEEEEecCCCCcccEEEEEEEEc-C---CCCCCeeeEEEEEecC
Q psy12855 7 DPYVKVYLLYKGQRVAKKKTHVKKRT---LNPVYNESFVFEVPADNLDSVSLELLLLDW-D---RVTKNEKIFFFFFSSS 79 (87)
Q Consensus 7 ~p~v~i~~~~~~~~~~~~~t~~~~~~---~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~-~---~~~~~~~lG~~~~~l~ 79 (87)
||||++++.. . ...||++++++ .||.|||+|.|.+... . ..|.++|||. + ..+++++||.+.++++
T Consensus 28 dpYv~v~l~~--~--~~~kT~v~~kt~~glnP~WnE~F~f~~~~~-~--~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~ 100 (483)
T 3bxj_A 28 RYYCELCLDD--M--LYARTTSKPRSASGDTVFWGEHFEFNNLPA-V--RALRLHLYRDSDKKRKKDKAGYVGLVTVPVA 100 (483)
T ss_dssp -----------------------------------CCEECC---------------------------------------
T ss_pred CCeEEEEECC--e--EEeeeeEEeCCCCCCCCccccEEEEecCCC-c--cEEEEEEEecCCccccCCCCceEEEEEEEHH
Confidence 8999998832 1 25689998888 9999999999986433 2 4799999994 4 2567899999999887
Q ss_pred C
Q psy12855 80 S 80 (87)
Q Consensus 80 ~ 80 (87)
+
T Consensus 101 ~ 101 (483)
T 3bxj_A 101 T 101 (483)
T ss_dssp -
T ss_pred H
Confidence 5
No 50
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=98.61 E-value=3.3e-07 Score=48.18 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=48.0
Q ss_pred CCCCEEEEEEEeCCceeeeEec-ccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecC
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKT-HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSS 79 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t-~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~ 79 (87)
..||||.+.+.... .....+| ..++++..|.|+++|...+... +.|.+.|++... ++++.+++++.
T Consensus 26 ~lDPy~aV~vdE~~-~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G----r~l~i~Vfh~a~----~fvAn~tV~~e 92 (126)
T 1yrk_A 26 ANQPFCAVKMKEAL-STERGKTLVQKKPTMYPEWKSTFDAHIYEG----RVIQIVLMRAAE----EPVSEVTVGVS 92 (126)
T ss_dssp SCCCEEEEEEEEEE-EETTEEEEECCSCCBCCCTTCEEEEECCTT----CEEEEEEEEETT----EEEEEEEEEHH
T ss_pred cCCceEEEEeeeeE-EcccceeecccCCCCCcCccceEEeeeeCC----EEEEEEEEcCCC----CeeeEEEEEHH
Confidence 47899999884321 1112344 6677899999999999998664 589999986443 78998888764
No 51
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=98.40 E-value=8.3e-07 Score=47.28 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=47.7
Q ss_pred CCCCEEEEEEEeCCceeeeEec-ccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 5 ELDPYVKVYLLYKGQRVAKKKT-HVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 5 ~~~p~v~i~~~~~~~~~~~~~t-~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
..||||.+.+.... .....+| ..++++..|.|+++|...+... +.|.+.|++... +|++.+++++.+
T Consensus 31 ~lDPY~aV~VdE~~-~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G----r~l~i~Vfh~a~----~fVAn~tV~~ed 98 (138)
T 2enj_A 31 AVNPYCAVLVKEYV-ESENGQMYIQKKPTMYPPWDSTFDAHINKG----RVMQIIVKGKNV----DLISETTVELYS 98 (138)
T ss_dssp CCCCEEEEEEEEEE-EETTEEEEEEEEEEECCCSSSEEEECCCSS----CEEEEEEECSSC----SCCEEEEEESHH
T ss_pred cCCceEEEEeeeee-eccCceeecccCCCCCccccceEeeeEECC----eEEEEEEEcCCC----CeeeEEEEEHHH
Confidence 47899988884221 1123556 5567789999999999888654 589999985333 688888887653
No 52
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=96.94 E-value=0.012 Score=33.83 Aligned_cols=60 Identities=10% Similarity=0.181 Sum_probs=46.9
Q ss_pred eeEecccccCCCCCeeceEEEEEecCCCCcccEEEEEEEEcCCC----CCCeeeEEEEEecCCc
Q psy12855 22 AKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV----TKNEKIFFFFFSSSSS 81 (87)
Q Consensus 22 ~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~~~ 81 (87)
..++|-+...+.+|.|+|++.+.++.+......|.|+++....- ..+..+|-+.++|-..
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~ 140 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY 140 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence 35677777778899999999999998888778899999874432 2235789999997654
No 53
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=95.72 E-value=0.083 Score=36.52 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCCEEEEEEEeCCceeeeEecccccCCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCCC----------------CC
Q psy12855 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRVT----------------KN 68 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~~~~t~~~~~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~~----------------~~ 68 (87)
.+.||.+.+-.++.......|..+.-+.+|.|||-+.|.+...++ .+..|.+++|+....+ ..
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKA 317 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC--------------------
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecccCccccccccccccccccccc
Confidence 355777766555555445556555556679999999998665544 3468999999743211 23
Q ss_pred eeeEEEEEecCC
Q psy12855 69 EKIFFFFFSSSS 80 (87)
Q Consensus 69 ~~lG~~~~~l~~ 80 (87)
..+|.+.+++-+
T Consensus 318 ~~lg~~n~~lfd 329 (961)
T 1e7u_A 318 QLLYYVNLLLID 329 (961)
T ss_dssp CEEEEEEEESBC
T ss_pred eeEEEEeeeeec
Confidence 478888776543
No 54
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=94.07 E-value=0.64 Score=32.27 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=47.0
Q ss_pred CCCEEEEEEEeCCceee-eEecccccCCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCC--C----------CCeee
Q psy12855 6 LDPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRV--T----------KNEKI 71 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~-~~~t~~~~~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~--~----------~~~~l 71 (87)
.+.||.+.+-.++.... ...|..+.-..+|.|||-..|.+...++ .+..|.+++|+.... + ....+
T Consensus 235 ~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~l 314 (940)
T 2wxf_A 235 MKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPI 314 (940)
T ss_dssp CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEE
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceE
Confidence 34566666654544322 3445554446689999999998766554 246899999985321 1 23488
Q ss_pred EEEEEecCC
Q psy12855 72 FFFFFSSSS 80 (87)
Q Consensus 72 G~~~~~l~~ 80 (87)
|.+.+++-+
T Consensus 315 g~~~~~lFd 323 (940)
T 2wxf_A 315 AWANLMLFD 323 (940)
T ss_dssp EEEEEESBC
T ss_pred EEEeeeEEC
Confidence 988887644
No 55
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=92.91 E-value=0.71 Score=32.58 Aligned_cols=74 Identities=15% Similarity=0.146 Sum_probs=45.1
Q ss_pred CCCEEEEEEEeCCceee-eEecccccCCCCCeeceEEEEEecCCCC-cccEEEEEEEEcCCC----CCCeeeEEEEEecC
Q psy12855 6 LDPYVKVYLLYKGQRVA-KKKTHVKKRTLNPVYNESFVFEVPADNL-DSVSLELLLLDWDRV----TKNEKIFFFFFSSS 79 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~~-~~~t~~~~~~~~P~~~~~~~f~~~~~~~-~~~~l~v~v~~~~~~----~~~~~lG~~~~~l~ 79 (87)
.+.||.+.+-.++.... ...|+.+. ..+|.|||-..|.+.-.++ .+..|.+++|+.... .....+|.+.+++-
T Consensus 375 ~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 375 DKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred ceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 45688877764443322 33444333 3467799999999765544 346899999975432 12347888887754
Q ss_pred C
Q psy12855 80 S 80 (87)
Q Consensus 80 ~ 80 (87)
+
T Consensus 454 d 454 (1091)
T 3hhm_A 454 D 454 (1091)
T ss_dssp C
T ss_pred c
Confidence 3
No 56
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=86.69 E-value=1.1 Score=31.75 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCCEEEEEEEeCCcee-eeEecccccCCCCCeeceEEEEEecCCCCc-ccEEEEEEEEc
Q psy12855 6 LDPYVKVYLLYKGQRV-AKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDW 62 (87)
Q Consensus 6 ~~p~v~i~~~~~~~~~-~~~~t~~~~~~~~P~~~~~~~f~~~~~~~~-~~~l~v~v~~~ 62 (87)
.+.||.+.+-.+++.. ....|..+.-..+|.|||-+.|.+...++. +..|.+++|+.
T Consensus 371 ~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~~ 429 (1092)
T 2y3a_A 371 VKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYAV 429 (1092)
T ss_dssp CCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCCC
T ss_pred ceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEEe
Confidence 3456665554444332 133344444466799999999997766553 56799999975
No 57
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=52.25 E-value=27 Score=19.01 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=39.6
Q ss_pred eEecccccCCCCCeeceEEEEEecCCCC-----cccEEEEEEEEcCCCCCCeeeEEEEEecCC
Q psy12855 23 KKKTHVKKRTLNPVYNESFVFEVPADNL-----DSVSLELLLLDWDRVTKNEKIFFFFFSSSS 80 (87)
Q Consensus 23 ~~~t~~~~~~~~P~~~~~~~f~~~~~~~-----~~~~l~v~v~~~~~~~~~~~lG~~~~~l~~ 80 (87)
.+.|.+.. +.+|.+|-+..|.+...++ ....+.+.+..... ..-+.+|.+.+++.+
T Consensus 55 tq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g-~~~~tla~~~I~l~~ 115 (156)
T 2yrb_A 55 LQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYS-TEYETIAACQLKFHE 115 (156)
T ss_dssp CEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECS-SCEEEEEEEEECCSH
T ss_pred eeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeC-CCceEEEEEEEEhHH
Confidence 55666655 6799999999998755432 34578888887533 345789999998764
No 58
>2wy3_B UL16, uncharacterized protein UL16; immune system-viral protein complex, immune response, innate immunity, structural mimicry; HET: NAG PEU; 1.80A {Human herpesvirus 5 strain AD169}
Probab=28.05 E-value=70 Score=16.65 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCCeeeEEEEEecCCceee
Q psy12855 57 LLLLDWDRVTKNEKIFFFFFSSSSSFFF 84 (87)
Q Consensus 57 v~v~~~~~~~~~~~lG~~~~~l~~~~~~ 84 (87)
++++-+.+...|+.+|-+.+.-....+.
T Consensus 35 ~sicyy~nvt~dei~gvaf~~q~nes~~ 62 (158)
T 2wy3_B 35 ISICYYENVTEDEIIGVAFTWQHNESVV 62 (158)
T ss_dssp EEEEEEESCCTTCBEEEEEEETTCTTCE
T ss_pred EEEEEecccCccceEEEEEEeecCchhh
Confidence 3444445667788999988765554443
No 59
>3uaf_A TTR-52; beta barrel/sandwich, cell engulfment, secreted, protein BIN; 2.01A {Caenorhabditis elegans}
Probab=22.53 E-value=84 Score=16.08 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=16.5
Q ss_pred EEEEEEEEcCC--CCCCeeeEEEEEecCCc
Q psy12855 54 SLELLLLDWDR--VTKNEKIFFFFFSSSSS 81 (87)
Q Consensus 54 ~l~v~v~~~~~--~~~~~~lG~~~~~l~~~ 81 (87)
.+.|.+|+.+. ...+++++...-.-+..
T Consensus 22 ~V~V~L~d~~~~~~d~Ddll~~~~Td~~G~ 51 (117)
T 3uaf_A 22 KVHIDLWDAAAAAAESDDLMGRTWSDRNGN 51 (117)
T ss_dssp SCEEEEEEHHHHHTTSCCEEEEEECCTTSE
T ss_pred CEEEEEEecccccCCchHhheeeEECCCCE
Confidence 46788887333 33567888765543333
Done!