RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12855
(87 letters)
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 106 bits (267), Expect = 1e-31
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV L + +R++KKKTHVKK T N V+NE FVF++P ++L+ +S+E L+LD +R +
Sbjct: 52 DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 111
Query: 67 KNEKI 71
+NE I
Sbjct: 112 RNEVI 116
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 105 bits (264), Expect = 3e-31
Identities = 34/75 (45%), Positives = 53/75 (70%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV+L+YK +RV KKKT KKR LNP++NESF F++P + L ++ + ++D D+++
Sbjct: 38 DPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLS 97
Query: 67 KNEKIFFFFFSSSSS 81
+N+ I + S S
Sbjct: 98 RNDVIGKIYLSWKSG 112
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 104 bits (262), Expect = 1e-30
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 1 MKDNEL-DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 59
M N DP+VK++L + AK KT +KK+TLNP +NE F +++ +L SL++ +
Sbjct: 52 MDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV 111
Query: 60 LDWDRVTKNEKI 71
D+D N+ I
Sbjct: 112 WDYDIGKSNDYI 123
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 102 bits (257), Expect = 5e-30
Identities = 34/65 (52%), Positives = 49/65 (75%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP + + V + + +LD+D++
Sbjct: 47 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 106
Query: 67 KNEKI 71
KN+ I
Sbjct: 107 KNDAI 111
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 100 bits (250), Expect = 1e-27
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK L+ +G+R+ K+KT +KK TLNP YNE+ VF+V +++++V L + ++D+D +
Sbjct: 174 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 233
Query: 67 KNEKIFFFFFSSSSS 81
NE I ++
Sbjct: 234 HNEVIGVCRVGPEAA 248
Score = 80.3 bits (198), Expect = 5e-20
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK+YLL ++ K +T V ++TLNP++NE+F F VP L L + D+DR +
Sbjct: 42 DPYVKIYLLPDRKK--KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 99
Query: 67 KNEKI 71
+++ I
Sbjct: 100 RHDLI 104
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 98.0 bits (244), Expect = 8e-27
Identities = 34/65 (52%), Positives = 49/65 (75%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP + + V + + +LD+D++
Sbjct: 172 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231
Query: 67 KNEKI 71
KN+ I
Sbjct: 232 KNDAI 236
Score = 81.4 bits (201), Expect = 2e-20
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR +
Sbjct: 41 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS 98
Query: 67 KNEKI 71
K++ I
Sbjct: 99 KHDII 103
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 93.6 bits (233), Expect = 2e-26
Identities = 24/66 (36%), Positives = 40/66 (60%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYV++YLL +R ++KTHV K+TLNPV+++SF F V + +L++ + +
Sbjct: 45 DPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFL 104
Query: 67 KNEKIF 72
+K
Sbjct: 105 SKDKGL 110
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 92.0 bits (229), Expect = 9e-26
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
+PYVK YLL R K+KT +K+ T+NP+Y+E+ +E+P L +L+ + R
Sbjct: 46 NPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG 105
Query: 67 KNEKI 71
+N +
Sbjct: 106 RNTFL 110
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 88.2 bits (219), Expect = 2e-24
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK+ L+ + +K+KT + TLNP +NESF F++ + D L + + DWDR T
Sbjct: 38 DPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTT 96
Query: 67 KNEKI 71
+N+ +
Sbjct: 97 RNDFM 101
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 88.2 bits (219), Expect = 3e-24
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK+ L+ + +K+KT K +LNP +NE+F F++ + D L + + DWD +
Sbjct: 53 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTS 111
Query: 67 KNEKI 71
+N+ +
Sbjct: 112 RNDFM 116
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 86.6 bits (215), Expect = 8e-24
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
+PYVK+Y L K++T K+TL P +N++F++ V LE+ L D RV
Sbjct: 43 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 102
Query: 66 TKNEKIF 72
+ E F
Sbjct: 103 REEESEF 109
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 85.5 bits (212), Expect = 2e-23
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR +
Sbjct: 56 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 67 KNEKI 71
K++ I
Sbjct: 114 KHDII 118
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 85.5 bits (212), Expect = 4e-23
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK+ L+ + R+ +KT +P ++E F F V ++ L + + + +
Sbjct: 48 DPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQS 106
Query: 67 KN 68
+
Sbjct: 107 RQ 108
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 84.7 bits (210), Expect = 4e-23
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
D YV+ + + V + +T +KKR L+ + E V + + L + +L L L DR +
Sbjct: 45 DCYVQGSVANRTGSV-EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103
Query: 67 KNEKI 71
++
Sbjct: 104 RHSVA 108
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 84.6 bits (210), Expect = 4e-23
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
+PYVK+Y L K++T K+TL P +N++F++ V LE+ L D RV
Sbjct: 40 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 99
Query: 66 TKNEKIF 72
+ E F
Sbjct: 100 REEESEF 106
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 84.4 bits (209), Expect = 8e-23
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR +
Sbjct: 64 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 121
Query: 67 KNEKI 71
K++ I
Sbjct: 122 KHDII 126
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 83.5 bits (207), Expect = 1e-22
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
+PYVK YLL + +K+KT + ++T NP +NE V+ + L L+L +L + +
Sbjct: 41 NPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESL 100
Query: 66 TKNEKI 71
+N +
Sbjct: 101 RENFFL 106
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 84.5 bits (209), Expect = 1e-22
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLL-LDWDRV 65
PYVKVYLL G +AKKKT + ++TL+P+Y +S VF+ L++++ D+ R+
Sbjct: 53 APYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES---PQGKVLQVIVWGDYGRM 109
Query: 66 TKNEKI 71
+
Sbjct: 110 DHKCFM 115
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 82.8 bits (205), Expect = 2e-22
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
DPYVK++LL + K +T + T NPV+NE+ + + +++ +L + + D D+
Sbjct: 51 DPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF 110
Query: 66 TKNEKI 71
NE I
Sbjct: 111 GHNEFI 116
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 82.1 bits (203), Expect = 7e-22
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
+PYVK+ LL + K+T VK++T PV+ E + FE+P +L L ++D+D+ +
Sbjct: 55 NPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS 112
Query: 67 KNEKI 71
++ I
Sbjct: 113 RHCVI 117
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 79.7 bits (197), Expect = 5e-21
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 3/66 (4%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
DP+VK+YLL + K +T VK++ LNP +NE+F+FE P + + L L +LD+DR
Sbjct: 48 DPFVKIYLL--PDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF 105
Query: 66 TKNEKI 71
++N+ I
Sbjct: 106 SRNDPI 111
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 77.5 bits (191), Expect = 5e-20
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 7 DPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
++V +L +T + V+NE F + L +L + + DR
Sbjct: 65 KVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRS 124
Query: 66 TKNE 69
E
Sbjct: 125 HLEE 128
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 76.7 bits (189), Expect = 7e-20
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 10/73 (13%)
Query: 7 DPYVKVYLL---------YKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLE 56
DP+VKVYLL K++T +++LNP +N++ +++ + + L +LE
Sbjct: 40 DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLE 99
Query: 57 LLLLDWDRVTKNE 69
+ + D+DR + N+
Sbjct: 100 VTVWDYDRFSSND 112
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 76.2 bits (188), Expect = 9e-20
Identities = 21/66 (31%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
DPY+K+ +L + + K KT V ++TL+P ++E+F F +P + ++L +L +DR
Sbjct: 45 DPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRF 102
Query: 66 TKNEKI 71
++++ I
Sbjct: 103 SRDDII 108
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular
dystrophy, cardiomyopathy, membrane fusion, dystrophin,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 74.4 bits (183), Expect = 6e-19
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLD-SVSLELLLLDWDRV 65
DP V V + KKKT LNPV+NE F++ LD S SL +++ D++ +
Sbjct: 28 DPIVSVIF-----KDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETI 82
Query: 66 TKNEKI 71
+N+ I
Sbjct: 83 GQNKLI 88
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 72.9 bits (179), Expect = 3e-18
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 7 DPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
DPYV+V L + +T K++LNP +NE +F V L + D +R+
Sbjct: 42 DPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQH---RLLFEVFDENRL 98
Query: 66 TKNEKI 71
T+++ +
Sbjct: 99 TRDDFL 104
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 71.5 bits (175), Expect = 2e-17
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 7 DPYVKVYLL-YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
DPYV+V L + +T K++LNP +NE +F V + + D +R+
Sbjct: 30 DPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRH---RILFEVFDENRL 86
Query: 66 TKNEKI 71
T+++ +
Sbjct: 87 TRDDFL 92
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding,
membrane associate, lipid binding PROT; 1.96A {Homo
sapiens} PDB: 2jqz_A
Length = 132
Score = 70.1 bits (172), Expect = 2e-17
Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DP+ K+ + GQ T K TL+P +N+ + V + S+ + + + ++
Sbjct: 27 DPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHYDLYVG----KTDSITISVWNHKKIH 79
Query: 67 KNEKIFF 73
K + F
Sbjct: 80 KKQGAGF 86
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 63.5 bits (155), Expect = 8e-15
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DP+ + L + +TH + LNP +N+ F F + ++ V LE+ + D D
Sbjct: 35 DPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIK--DIHDV-LEVTVFDEDGDK 86
Query: 67 KNEKI 71
+ +
Sbjct: 87 PPDFL 91
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 63.1 bits (153), Expect = 2e-14
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
LDPY+ V + RV + T K++T P YNE F V D LEL + +
Sbjct: 60 LDPYLTVSV--DQVRVGQ--TSTKQKTNKPTYNEEFCANVT----DGGHLELAVFHETPL 111
Query: 66 TKNEKI 71
+ +
Sbjct: 112 GYDHFV 117
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 61.2 bits (149), Expect = 7e-14
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYV++ Q +K + P +NE+F+F V + L+ + D D T
Sbjct: 32 DPYVQLTCR--TQD--QKSNVAEGMGTTPEWNETFIFTVSEGTTE---LKAKIFDKDVGT 84
Query: 67 KNEKI 71
+++ +
Sbjct: 85 EDDAV 89
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 60.8 bits (148), Expect = 8e-14
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYV++++ ++K+T +NPV+NE+F F + LE+ L+D + V
Sbjct: 28 DPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMDANYV- 82
Query: 67 KNEKIFFFFFS 77
+E + F+
Sbjct: 83 MDETLGTATFT 93
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 61.0 bits (148), Expect = 1e-13
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
PYV+V + GQ KKT T +P + + V L + +
Sbjct: 58 SPYVEVTV--DGQ---SKKTEKCNNTNSPKWKQPLTVIVT----PVSKLHFRVWSHQTLK 108
Query: 67 KNEKI 71
+ +
Sbjct: 109 SDVLL 113
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 59.5 bits (144), Expect = 3e-13
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 61
+ LDPY+ + + R+ +T K++T +P +++ FV +V + +EL +
Sbjct: 34 QTFLLDPYIALNV--DDSRI--GQTATKQKTNSPAWHDEFVTDVC----NGRKIELAVFH 85
Query: 62 WDRVTKNEKI 71
+ ++ +
Sbjct: 86 DAPIGYDDFV 95
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 57.5 bits (139), Expect = 2e-12
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYV V + KK+T LNPV+ E+F FE S +++ +LD D
Sbjct: 39 DPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECH---NSSDRIKVRVLDEDDDI 90
Query: 67 KNEKIFFFFFSS 78
K+ F S
Sbjct: 91 KSRVKQRFKRES 102
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 56.9 bits (136), Expect = 2e-11
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYV++++ ++K+T +NPV+NE+F F + + LE+ L+D + V
Sbjct: 43 DPYVELFI--STTPDSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLMDANYVM 98
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 44.9 bits (105), Expect = 4e-07
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
D Y+KV+ + + +T V NP + + FE + L + + D D
Sbjct: 415 DAYLKVFFGGQ-----EFRTGVVWNNNNPRWTDKMDFENVLLSTGGP-LRVQVWDADYGW 468
Query: 67 KNEKI 71
++ +
Sbjct: 469 DDDLL 473
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 39.2 bits (91), Expect = 2e-05
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 6/66 (9%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVY-NESFVFEVPADNLDSVSLELLLLDWDRV 65
D KV R + V + + +E+F + V + + LE+ + ++ +V
Sbjct: 38 DRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV 92
Query: 66 TKNEKI 71
N+ I
Sbjct: 93 FSNKLI 98
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding,
neurotransmitter release, RIM, MUNC13 domains,
exocytosis, metal-binding; 1.44A {Rattus norvegicus}
SCOP: b.7.1.1
Length = 131
Score = 37.3 bits (86), Expect = 9e-05
Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 62
+ + YV + + K T + R P + + F+FE+ + + L L + W
Sbjct: 20 QEKFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMFEI-----NRLDLGLTVEVW 68
Query: 63 DR 64
++
Sbjct: 69 NK 70
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 36.8 bits (84), Expect = 3e-04
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 1 MKDNELDPYVKVYLLYKGQRVAKKKTHVKKR-TLNPVYNESFVFEVPADNLDSVSLELLL 59
K++ +DP V V + G+ ++T V NP ++ F FEV +L + ++
Sbjct: 515 NKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMV 572
Query: 60 LDWDRVTKNEKIFFFFF 76
D+D +KN+ I
Sbjct: 573 EDYDSSSKNDFIGQSTI 589
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 34.7 bits (79), Expect = 8e-04
Identities = 8/61 (13%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 1 MKDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLL 60
+ ++PY V + + + KK T+ P ++ +F + +++++
Sbjct: 27 CQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHI----NKGRVMQIIVK 82
Query: 61 D 61
Sbjct: 83 G 83
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 34.6 bits (79), Expect = 0.001
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDW 62
+ + YV + K Q V + T + R P + + F+FE+ + + L L + W
Sbjct: 29 QEKFNTYVTL----KVQNV--ESTTIAVRGSQPSWEQDFMFEI-----NRLDLGLTVEVW 77
Query: 63 DR 64
++
Sbjct: 78 NK 79
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 32.4 bits (73), Expect = 0.006
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 61
+D P+ V + K KK T+ P + +F + ++++L+
Sbjct: 23 EDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEGR----VIQIVLMR 78
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation,
membrane, phosphoprotein, SH3-binding, signaling
protein; 3.00A {Rattus norvegicus}
Length = 483
Score = 29.6 bits (65), Expect = 0.088
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 5/69 (7%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVK-KRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
Y ++ L A+ + + + E F F L D D+
Sbjct: 28 RYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDKK 83
Query: 66 TKNEKIFFF 74
K +K +
Sbjct: 84 RKKDKAGYV 92
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 27.6 bits (60), Expect = 0.51
Identities = 10/64 (15%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 3 DNELDPYVKVYLLYKGQRVAKKK---THVKKRTLNPVYNESFVFEVPADNLDSVSLELLL 59
D ++ YV+V + +KK ++ ++P Y+E D + +++
Sbjct: 664 DKQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV 723
Query: 60 LDWD 63
+ +
Sbjct: 724 SEEN 727
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 26.4 bits (59), Expect = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 54 SLELL-LLDWDRVTKNEKIFF 73
S LL LD+D + +N K F
Sbjct: 91 SNGLLKYLDYDLIRENPKFFC 111
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 26.9 bits (58), Expect = 1.1
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 7 DPYVKVYLLYKGQRVAKKKTH---VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 61
YV+V L ++ ++NPV+ E + SL + +++
Sbjct: 696 RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME 753
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 1.1
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 18/57 (31%)
Query: 39 ESFVFEVPADNLDSVSLELLLLD-------------WDRVTKNEKIFF--FFFSSSS 80
E+ E+P + + + + WD ++ K+++ FFF +
Sbjct: 172 ENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAIS---KLYYVQFFFKQAE 225
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 26.0 bits (57), Expect = 1.8
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 54 SLELL-LLDWDRVTKNEKIFF 73
S LL LD+D + N KI
Sbjct: 122 SNSLLPFLDYDAIIANPKIII 142
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 25.7 bits (57), Expect = 1.8
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 54 SLELL-LLDWDRVTKNEKIFFFF 75
S LL +D+D N KI +
Sbjct: 92 SNSLLPYIDYDAFQNNPKIMIGY 114
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio
regulation; 1.58A {Porphyromonas gingivalis}
Length = 232
Score = 24.9 bits (55), Expect = 3.6
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 10/37 (27%)
Query: 35 PVYNESFVFEVPAD----NLDSVSLE------LLLLD 61
+Y E F+ V D + L LLD
Sbjct: 79 LLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLD 115
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 24.5 bits (54), Expect = 5.4
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 11 KVYL-LYKGQRVAKKKTHVKKRTLNPVYNESFVFEV 45
KVY + G VA K E+ E
Sbjct: 22 KVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEA 57
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory
domain, oxidized form, transcription; 2.30A {Escherichia
coli} SCOP: c.94.1.1 PDB: 1i69_A
Length = 219
Score = 24.5 bits (54), Expect = 5.8
Identities = 8/37 (21%), Positives = 18/37 (48%), Gaps = 10/37 (27%)
Query: 35 PVYNESFVFEVPAD----NLDSVSLE------LLLLD 61
P+++E + + D N ++V + LL+L+
Sbjct: 73 PLFDEPMLLAIYEDHPWANREAVPMADLAGEKLLMLE 109
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding
protein, homodimer, transport protein; 1.80A
{Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A
1zsz_C
Length = 129
Score = 24.0 bits (52), Expect = 6.4
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLN 34
DN PY+ V Y G V + + LN
Sbjct: 22 DNSFTPYLVVDATYLGVNVPVEYVKDGQIVLN 53
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket,
protein-peptide complex, homodimer, transport protein;
1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB:
1zsz_A 1twb_A 1zsz_B
Length = 111
Score = 23.9 bits (52), Expect = 6.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLN 34
DN PY+ V Y G V + + LN
Sbjct: 22 DNSFTPYLVVDATYLGVNVPVEYVKDGQIVLN 53
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB,
RSEA, protein binding; 1.80A {Escherichia coli} SCOP:
b.136.1.1 PDB: 1ox9_A 1ox8_A
Length = 118
Score = 24.0 bits (52), Expect = 7.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 3 DNELDPYVKVYLLYKGQRVAKKKTHVKKRTLN 34
DN+L P++ V + G +V + + LN
Sbjct: 23 DNQLTPHLVVDVTLPGVQVPMEYARDGQIVLN 54
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 24.2 bits (51), Expect = 9.0
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 7 DPYVKVYLLYKGQRVAKKKT--HVKKRTLNPVYNES-FVFE 44
YV+V + +K + + NPV++E F F
Sbjct: 743 GIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFP 783
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.140 0.406
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,255,739
Number of extensions: 59294
Number of successful extensions: 278
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 67
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.3 bits)