RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12855
(87 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 67.8 bits (165), Expect = 8e-17
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV L + +R++KKKTHVKK T N V+NE FVF++P ++L+ +S+E L+LD +R +
Sbjct: 37 DPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGS 96
Query: 67 KNEKI 71
+NE I
Sbjct: 97 RNEVI 101
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 63.3 bits (153), Expect = 3e-15
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DP+VK++L + AK KT +KK+TLNP +NE F +++ +L SL++ + D+D
Sbjct: 37 DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGK 96
Query: 67 KNEKIFFFFFSSSSS 81
N+ I S+
Sbjct: 97 SNDYIGGCQLGISAK 111
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 61.8 bits (149), Expect = 2e-14
Identities = 36/75 (48%), Positives = 53/75 (70%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK++L+ G+R+ KKKT +KK TLNP YNESF FEVP + + V + + +LD+D++
Sbjct: 47 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 106
Query: 67 KNEKIFFFFFSSSSS 81
KN+ I F +S+
Sbjct: 107 KNDAIGKVFVGYNST 121
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 57.1 bits (137), Expect = 1e-12
Identities = 30/65 (46%), Positives = 48/65 (73%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK L+ +G+R+ K+KT +KK TLNP YNE+ VF+V +++++V L + ++D+D +
Sbjct: 42 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 101
Query: 67 KNEKI 71
NE I
Sbjct: 102 HNEVI 106
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 56.3 bits (135), Expect = 1e-12
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLELLLLDWDRV 65
+PYVK+Y L K++T K+TL P +N++F++ V LE+ L D RV
Sbjct: 36 NPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARV 95
Query: 66 TKNEKIF 72
+ E F
Sbjct: 96 REEESEF 102
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 51.2 bits (122), Expect = 1e-10
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK+ L+ + +K+KT K +LNP +NE+F F++ + D L + + DWD +
Sbjct: 37 DPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTS 95
Query: 67 KNEKI 71
+N+ +
Sbjct: 96 RNDFM 100
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 50.9 bits (121), Expect = 3e-10
Identities = 29/65 (44%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVKV+LL ++ K +T V ++TLNPV+NE F F+VP L +L + + D+DR +
Sbjct: 56 DPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS 113
Query: 67 KNEKI 71
K++ I
Sbjct: 114 KHDII 118
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 49.4 bits (117), Expect = 7e-10
Identities = 11/73 (15%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 61
+D+ P+ V + K KK T+ P + +F + ++++L+
Sbjct: 20 EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGR----VIQIVLMR 75
Query: 62 WDRVTKNEKIFFF 74
+E
Sbjct: 76 AAEDPMSEVTVGV 88
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 46.9 bits (110), Expect = 8e-09
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYVK+YLL ++ K +T V ++TLNP++NE+F F VP L L + D+DR +
Sbjct: 40 DPYVKIYLLPDRKK--KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS 97
Query: 67 KNEKIFFFFFSSSSSFF 83
+++ I +
Sbjct: 98 RHDLIGQVVLDNLLELA 114
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme
D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 44.8 bits (105), Expect = 5e-08
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Query: 7 DPYVKVYLLYKGQRVAKKKTH-VKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
DP V V + G+ ++T + NP ++ F FEV +L V + D+D
Sbjct: 28 DPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFM--VEDYDSS 85
Query: 66 TKNEKIFFFFFS 77
+KN+ I
Sbjct: 86 SKNDFIGQSTIP 97
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 43.9 bits (103), Expect = 1e-07
Identities = 20/66 (30%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFV-FEVPADNLDSVSLELLLLDWDRV 65
DPY+K+ +L + + K KT V ++TL+P ++E+F + +P + ++L +L +DR
Sbjct: 45 DPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRF 102
Query: 66 TKNEKI 71
++++ I
Sbjct: 103 SRDDII 108
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 40.3 bits (93), Expect = 3e-06
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
D YV+ + + +T +KKR L+ + E V + + L + +L L L DR +
Sbjct: 45 DCYVQGSVA-NRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS 103
Query: 67 KNEKIFFFFFS 77
++
Sbjct: 104 RHSVAGELRLG 114
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 39.7 bits (92), Expect = 4e-06
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRVT 66
DPYV++ + +K + P +NE+F+F V + + D D T
Sbjct: 32 DPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELK---AKIFDKDVGT 84
Query: 67 KNEKI 71
+++ +
Sbjct: 85 EDDAV 89
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 38.8 bits (90), Expect = 9e-06
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 7 DPYVKVYLL---YKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWD 63
YV+V L +R + K ++NPV+ E + SL + +++
Sbjct: 19 RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG 78
Query: 64 R 64
Sbjct: 79 N 79
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 39.1 bits (90), Expect = 9e-06
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 7 DPYVKVYLLYKGQRVA---------KKKTHVKKRTLNPVYNESFVFE-VPADNLDSVSLE 56
DP+VKVYLL +V K++T +++LNP +N++ +++ + + L +LE
Sbjct: 40 DPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLE 99
Query: 57 LLLLDWDRVTKNEKI 71
+ + D+DR + N+ +
Sbjct: 100 VTVWDYDRFSSNDFL 114
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 36.0 bits (82), Expect = 1e-04
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 2 KDNELDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLD 61
+ LDPY+ +T K++T +P +++ FV +V EL +
Sbjct: 34 QTFLLDPYIA----LNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNGRKI----ELAVFH 85
Query: 62 WDRVTKNEKIFFFFFS 77
+ ++ +
Sbjct: 86 DAPIGYDDFVANCTIQ 101
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 32.8 bits (74), Expect = 0.002
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 7 DPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSVSLELLLLDWDRV 65
DPYV++++ ++K+T +NPV+NE+F F + + + + + L+D + V
Sbjct: 28 DPYVELFIS--TTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEIT--LMDANYV 82
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 128
Score = 27.8 bits (61), Expect = 0.11
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 6 LDPYVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNLDSV 53
+ YV + + K T + R P + + F+FE+ +L
Sbjct: 20 FNTYVTL------KVQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLT 61
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase,
HppD {Pseudomonas fluorescens [TaxId: 294]}
Length = 203
Score = 24.5 bits (53), Expect = 1.8
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 58 LLLDWDRVTKNEKIFFFFFSSS--SSFFFLII 87
+LLD V ++++ FS + FF I
Sbjct: 140 ILLDGSSVEGDKRLLLQIFSETLMGPVFFEFI 171
>d1wlfa1 d.31.1.1 (A:100-179) Peroxisome biogenesis factor 1
(PEX-1), domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 22.4 bits (48), Expect = 5.9
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 50 LDSVSLELLLLDWDRVTKNEKIFFFFFSSSSSFFFLI 86
L ++SLE LLD R+ + + + + F I
Sbjct: 22 LHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQI 58
>d1e7ua2 b.7.1.1 (A:351-524) Phoshoinositide 3-kinase (PI3K) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 174
Score = 22.6 bits (48), Expect = 7.3
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 9 YVKVYLLYKGQRVAKKKTHVKKRTLNPVYNESFVFEVPADNL 50
+V+ + Y Q + +++T K T ++N F + +L
Sbjct: 32 FVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDL 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.140 0.406
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 314,809
Number of extensions: 11880
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 28
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)