Query psy12858
Match_columns 131
No_of_seqs 143 out of 1167
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 21:35:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gir_A Aminomethyltransferase; 99.9 5.6E-25 1.9E-29 179.2 12.6 102 5-119 289-391 (393)
2 3tfi_A GCVT-like aminomethyltr 99.9 2.6E-24 8.8E-29 173.8 11.5 99 5-114 270-369 (369)
3 1yx2_A Aminomethyltransferase; 99.9 2.6E-23 8.8E-28 167.1 13.4 99 5-116 266-365 (365)
4 1pj5_A N,N-dimethylglycine oxi 99.9 1.6E-23 5.6E-28 182.2 12.8 104 5-122 725-829 (830)
5 1v5v_A Aminomethyltransferase; 99.9 1.1E-22 3.7E-27 165.7 15.2 103 6-121 295-397 (401)
6 1wos_A Aminomethyltransferase; 99.9 5E-22 1.7E-26 159.5 14.6 100 6-120 262-362 (364)
7 1vlo_A Aminomethyltransferase; 99.9 3.9E-22 1.3E-26 161.6 12.4 94 7-117 275-372 (381)
8 1wsr_A Aminomethyltransferase; 99.9 8.4E-22 2.9E-26 158.9 12.6 98 5-116 271-369 (375)
9 2gag_A Heterotetrameric sarcos 99.9 1.2E-21 4.1E-26 173.6 11.4 104 6-122 851-964 (965)
10 3ttg_A Putative aminomethyltra 99.9 2E-21 6.9E-26 156.1 10.8 95 4-114 256-355 (355)
11 1vly_A SPOT PR51, unknown prot 99.7 5.3E-18 1.8E-22 135.3 10.1 96 5-117 238-338 (338)
12 2jys_A Protease/reverse transc 47.7 15 0.0005 24.0 2.8 19 94-113 62-80 (107)
13 3ghd_A A cystathionine beta-sy 31.4 32 0.0011 20.1 2.3 18 46-63 26-43 (70)
14 3laz_A D-galactarate dehydrata 28.7 46 0.0016 21.6 2.8 20 42-61 63-82 (99)
15 3k3s_A Altronate hydrolase; st 27.4 49 0.0017 21.7 2.8 20 42-61 70-89 (105)
16 3fio_A A cystathionine beta-sy 27.3 42 0.0014 18.5 2.3 17 47-63 27-43 (70)
17 1agj_A Epidermolytic toxin A; 26.0 82 0.0028 22.3 4.2 32 44-75 195-227 (242)
18 4esy_A CBS domain containing m 23.0 49 0.0017 22.0 2.3 17 46-62 139-155 (170)
19 3pe9_A Fibronectin(III)-like m 21.1 59 0.002 20.6 2.3 23 47-69 36-58 (98)
No 1
>3gir_A Aminomethyltransferase; glycine cleavage system, aminotransferase, structural genomics; 1.60A {Bartonella henselae}
Probab=99.92 E-value=5.6e-25 Score=179.19 Aligned_cols=102 Identities=19% Similarity=0.334 Sum_probs=91.5
Q ss_pred CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCcee-eCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858 5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIY-RNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83 (131)
Q Consensus 5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~-~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~ 83 (131)
|.||||||+|++++..|++||||+|.+++..+ ++.|++|+ .+|+.||+|||++|||+++++||||||+.+
T Consensus 289 Kg~fiGqeal~r~~~~G~~rrlvgl~~~~~~~-----~~~G~~v~~~~g~~vG~VTS~~~sp~l~~~iaLa~v~~~---- 359 (393)
T 3gir_A 289 KAQFYGAKAFLESLQKGPSRCRVGLKPQTRQP-----IRAGAVLFDNEGNRIGVVTSGGFGPSFDGPVAMGYVPVA---- 359 (393)
T ss_dssp HCCSTTHHHHHHHHHHCCSSEEEEEEESSSSC-----CCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGG----
T ss_pred CCCCcCHHHHHHHHhcCCCeEEEEEEECCCcC-----CCCCCEEEccCCeEEEEEEEEEECCCCCcEEEEEEEcHH----
Confidence 46999999999998889999999999987655 89999999 789999999999999999999999999983
Q ss_pred cccccccCcEEEEEECCeEEEEEEEeCCCccCCCCC
Q psy12858 84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVA 119 (131)
Q Consensus 84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~ 119 (131)
....|+.++|+++|++++|+|+ ++|||++...
T Consensus 360 ---~~~~G~~l~v~i~g~~~~a~v~-~~PF~~~~~~ 391 (393)
T 3gir_A 360 ---WKVEGTEVFTELRGKKIALSVH-SLPFVEQRYF 391 (393)
T ss_dssp ---GCSTTCEEEEEETTEEEEEEEE-CSCSSCCCCC
T ss_pred ---HcCCCCEEEEEECCEEEEEEEe-cCCCCCCCCC
Confidence 2236889999999999999999 8999988543
No 2
>3tfi_A GCVT-like aminomethyltransferase protein; demethylase, THF; 1.60A {Candidatus pelagibacter ubique} PDB: 3tfh_A 3tfj_A*
Probab=99.91 E-value=2.6e-24 Score=173.77 Aligned_cols=99 Identities=21% Similarity=0.338 Sum_probs=87.8
Q ss_pred CC-CCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858 5 KD-YFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83 (131)
Q Consensus 5 k~-dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~ 83 (131)
|. ||||||+|++++.+|++||||+|.++++.+. .++.|++|+.+|+.||+|||++|||+++++||||||+.+
T Consensus 270 Kg~~fiGqeal~r~~~~G~~rrlvgl~~~~~~~~---~~~~g~~v~~~g~~vG~VTS~~~sp~lg~~iala~v~~~---- 342 (369)
T 3tfi_A 270 SDINFLGKEKLKEIKLKGPQKKLRGVKIDIKEIS---LTGSKNIYDENNNVIGELRSACYSPHFQKVIGIAMIKKS---- 342 (369)
T ss_dssp SSCCCTTHHHHHHHHHHCCSEEEEEEEESSSCCC---CCSCEEEECTTCCEEEEEEEEEEETTTTEEEEEEEEEGG----
T ss_pred CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCCCC---CcCCCCEEEeCCeEEEEEEeeeECCCCCceEEEEEECHH----
Confidence 44 8999999999998899999999999987541 136789999999999999999999999999999999983
Q ss_pred cccccccCcEEEEEECCeEEEEEEEeCCCcc
Q psy12858 84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114 (131)
Q Consensus 84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~ 114 (131)
....|+.++|+++|++++|+|+ ++|||
T Consensus 343 ---~~~~G~~l~v~i~g~~~~a~v~-~~Pf~ 369 (369)
T 3tfi_A 343 ---HWEASQGFKIQINDNTINGNVC-DLPFI 369 (369)
T ss_dssp ---GCSTTCEEEEEETTEEEEEEEE-CSSCC
T ss_pred ---HcCCCCEEEEEECCEEEEEEEE-CCCCC
Confidence 2236899999999999999999 89997
No 3
>1yx2_A Aminomethyltransferase; glycine cleavage system T protein, alpha-beta, beta-barrel, structural genomics, PSI, protein structure initiative; 2.08A {Bacillus subtilis}
Probab=99.90 E-value=2.6e-23 Score=167.12 Aligned_cols=99 Identities=21% Similarity=0.300 Sum_probs=87.2
Q ss_pred CC-CCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858 5 KD-YFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83 (131)
Q Consensus 5 k~-dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~ 83 (131)
|. ||||||++++++..|++||||+|.++++.+ ++.|++|+.+|+.||+|||++|||+++++||||||+.+
T Consensus 266 Kgc~yiGqe~lar~~~~g~~rrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~vtS~~~sp~~~~~iala~v~~~---- 336 (365)
T 1yx2_A 266 KESDFFGKSVLSEQKENGAKRKLVGLEMIEKGI-----PRHGYEVFQNGKSVGKVTTGTQSPTLGKNVGLALIDSE---- 336 (365)
T ss_dssp CSSCCTTHHHHHHHHHHCCSEEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEEGG----
T ss_pred CCCCCcCHHHHHHHHhcCCCeEEEEEEECCCcC-----CCCCCEEEECCeeEEEEEeccccCCCCceEEEEEEChH----
Confidence 45 599999999998889999999999987655 89999999999999999999999999999999999873
Q ss_pred cccccccCcEEEEEECCeEEEEEEEeCCCccCC
Q psy12858 84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNV 116 (131)
Q Consensus 84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp 116 (131)
....|+.++|+++|++++|+|+ .+||||+
T Consensus 337 ---~~~~g~~~~v~~~g~~~~a~v~-~~Pf~~~ 365 (365)
T 1yx2_A 337 ---TSEIGTVVDVEIRKKLVKAKVV-KTPFYKR 365 (365)
T ss_dssp ---GCSTTCEEEEEETTEEEEEEEE-CCCC---
T ss_pred ---HcCCCCEEEEEECCEEEEEEEE-cCCCCCC
Confidence 2246889999999999999999 8999985
No 4
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.90 E-value=1.6e-23 Score=182.22 Aligned_cols=104 Identities=30% Similarity=0.527 Sum_probs=94.3
Q ss_pred CCCCccHHHHHHhHhcCCCeEEEEEEEec-CCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858 5 KDYFIGKAALQRQKDQGVQKRLVMFVAED-LDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83 (131)
Q Consensus 5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~-~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~ 83 (131)
|.||||||+|++++..|+.||||+|.+++ ..+ +++|++|+.+|+.||+|||++|||+++++||||||+.+
T Consensus 725 kg~f~G~e~~~r~~~~g~~rrlv~l~~~~~~~~-----~~~g~~v~~~g~~vG~vts~~~sp~~~~~iala~v~~~---- 795 (830)
T 1pj5_A 725 KESFIGKGALEGRTEEASARRLRCLTIDDGRSI-----VLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSYLPGT---- 795 (830)
T ss_dssp SSCCTTHHHHTTCCSTTCSEEEEEEEETTSCCC-----CCSCCEEEETTEEEEECCSEEEETTTTEEEEEEEEETT----
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEEeCCCCC-----CCCCCEEeeCCeEEEEEecceeccccCceEEEEEechh----
Confidence 45999999999998889999999999987 344 78999999999999999999999999999999999973
Q ss_pred cccccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcC
Q psy12858 84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPY 122 (131)
Q Consensus 84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~ 122 (131)
+..|+.++|+++|+.++|+|+ .+|||||+++|++
T Consensus 796 ----~~~g~~~~v~~~~~~~~a~v~-~~pf~~~~~~r~~ 829 (830)
T 1pj5_A 796 ----VSVGDSVDIEYFGRRITATVT-EDPLYDPKMTRLR 829 (830)
T ss_dssp ----CCTTCEEEEEETTEEEEEEEE-CSCSSCTTCTTTC
T ss_pred ----hcCCCEEEEEECCEEEEEEEE-cCCCcCCcccccC
Confidence 223888999999999999999 8999999999886
No 5
>1v5v_A Aminomethyltransferase; glycine-cleavage sytem, structural riken structural genomics/proteomics initiative, RSGI; 1.50A {Pyrococcus horikoshii} SCOP: b.44.2.1 d.250.1.1
Probab=99.89 E-value=1.1e-22 Score=165.65 Aligned_cols=103 Identities=25% Similarity=0.373 Sum_probs=91.9
Q ss_pred CCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcc
Q psy12858 6 DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVT 85 (131)
Q Consensus 6 ~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~ 85 (131)
++|||||++++++..|..||||+|.++++.+ ++.|++|+.+|+.||+|||++|||+++++||||||+.+
T Consensus 295 KgyiGqE~lar~~~~G~~rrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~VtS~~~sp~~~~~iala~v~~~------ 363 (401)
T 1v5v_A 295 KDFIGKDALLKQKERGVGRKLVHFKMIDKGI-----PREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVKEE------ 363 (401)
T ss_dssp SCCTTHHHHHHHHHHCCCEEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEECTTTCSEEEEEEEEGG------
T ss_pred CCccCHHHHHHHHhhCCCeEEEEEEECCCCC-----CCCCCEEEECCEEEEEEEeeeEcCCCCceEEEEEEchH------
Confidence 4699999999999889889999999987655 88999999999999999999999999999999999973
Q ss_pred cccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCc
Q psy12858 86 NDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARP 121 (131)
Q Consensus 86 ~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~ 121 (131)
....|+.++|+++|+.++|+|+ .+|||||...+.
T Consensus 364 -~~~~g~~l~v~~~g~~~~a~v~-~~Pf~~~~~~~~ 397 (401)
T 1v5v_A 364 -YAKPGIEIEVEIRGQRKKAVTV-TPPFYDPKKYGL 397 (401)
T ss_dssp -GCSTTCEEEEEETTEEEEEEEE-CSCSSCTTTSST
T ss_pred -HcCCCCEEEEEECCEEEEEEEE-ccCCccccccCc
Confidence 1236788999999999999999 899999977643
No 6
>1wos_A Aminomethyltransferase; T-protein; 1.84A {Thermotoga maritima} SCOP: b.44.2.1 d.250.1.1 PDB: 1woo_A* 1wop_A* 1wor_A
Probab=99.88 E-value=5e-22 Score=159.55 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=89.0
Q ss_pred CCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeCCeEeEEEecceeccccCCeEEEEEecCCCCCCcc
Q psy12858 6 DYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQNVT 85 (131)
Q Consensus 6 ~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~v~ 85 (131)
++|||||++++++.. ++||||+|.++++.+ ++.|++|+.+|+.||+|||++|||+++++||||||+.
T Consensus 262 KgyiGqe~lar~~~~-~~rrlv~l~~~~~~~-----~~~g~~v~~~g~~vG~vtS~~~sp~~g~~iala~v~~------- 328 (364)
T 1wos_A 262 KDFVGKEALLKAKEK-VERKLVALELSGKRI-----ARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSK------- 328 (364)
T ss_dssp SCCTTHHHHHHHHHT-CCEEEEEEEESSSCC-----CCTTCEEEETTEEEEEEEEEEEETTTTEEEEEEEEET-------
T ss_pred CCCcCHHHHHHHHhc-cCeEEEEEEECCCcC-----CCCCCEEEECCeEEEEEEeceecCcCCceEEEEEEcc-------
Confidence 369999999999888 999999999987655 8899999999999999999999999999999999997
Q ss_pred cccccCcEEEEEECC-eEEEEEEEeCCCccCCCCCC
Q psy12858 86 NDFVTEGTYTLDVAG-NRFQASAHIYPPLSNVQVAR 120 (131)
Q Consensus 86 ~~~~~g~~~~V~i~g-~~~~A~v~~~~Pf~dp~~~r 120 (131)
+...|+.++|++++ +.++|+|+ .+|||+|...|
T Consensus 329 -~~~~g~~l~v~~~~~~~~~a~v~-~~Pf~~~~~~~ 362 (364)
T 1wos_A 329 -SVKIGDQLGVVFPGGKLVEALVV-KKPFYRGSVRR 362 (364)
T ss_dssp -TCCTTCEEEEEETTTEEEEEEEE-CSCSCCCSCC-
T ss_pred -ccCCCCEEEEEeCCCEEEEEEEE-ccCCCCccccc
Confidence 22357889999999 99999999 89999986543
No 7
>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolat dependent) of glycine cleavage system, structural genomics, protein structure initiative; HET: MSE; 1.70A {Escherichia coli K12} SCOP: b.44.2.1 d.250.1.1 PDB: 3a8j_A* 3a8i_A* 3a8k_A*
Probab=99.88 E-value=3.9e-22 Score=161.61 Aligned_cols=94 Identities=22% Similarity=0.318 Sum_probs=86.8
Q ss_pred CCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCceeeC---Ce-EeEEEecceeccccCCeEEEEEecCCCCC
Q psy12858 7 YFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRN---DQ-FVGTITSAGYGFTMKKLIGLGYIRHPSEQ 82 (131)
Q Consensus 7 dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~~~---g~-~VG~vTSg~ySp~l~~~Iala~v~~~~~~ 82 (131)
||||||++++++..|.. |||+|.++++.+ ++.|++|+.+ |+ .||+|||++|||+++++||||||+.
T Consensus 275 cfiGqE~lar~~~~G~~-rlv~l~~~~~~~-----~~~g~~v~~~~~~g~~~vG~VtS~~~sp~lg~~iala~v~~---- 344 (381)
T 1vlo_A 275 DFIGREALEVQREHGTE-KLVGLVMTEKGV-----LRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPE---- 344 (381)
T ss_dssp CCTTHHHHHHHHHHCCC-EEEEEEECSSSC-----CCTTCEEEEECTTCCEEEEEEEEEEEETTTTEEEEEEEECT----
T ss_pred CCcCHHHHHHHHhcCCC-EEEEEEECCCcC-----CCCCCEEEECCCCCCeeEEEEEEeeeCCCCCceEEEEEEEc----
Confidence 99999999999988988 999999988655 8999999987 88 9999999999999999999999987
Q ss_pred CcccccccCcEEEEEECCeEEEEEEEeCCCccCCC
Q psy12858 83 NVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQ 117 (131)
Q Consensus 83 ~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~ 117 (131)
+ .|+.++|+++|+.++|+|+ .+|||||.
T Consensus 345 ----~--~g~~l~v~~~g~~~~a~v~-~~Pf~~~~ 372 (381)
T 1vlo_A 345 ----G--IGETAIVQIRNREMPVKVT-KPVFVRNG 372 (381)
T ss_dssp ----T--CCSEEEEEETTEEEEEEEE-CSCCEETT
T ss_pred ----C--CCCEEEEEECCEEEEEEEe-cCCCCCCC
Confidence 3 5788999999999999999 89999985
No 8
>1wsr_A Aminomethyltransferase; glycine-cleavage sytem; 2.00A {Homo sapiens} PDB: 1wsv_A*
Probab=99.87 E-value=8.4e-22 Score=158.89 Aligned_cols=98 Identities=22% Similarity=0.253 Sum_probs=86.1
Q ss_pred CCCCccHHHHHHhHhcCCCeEEEEEEEecCCCCCCcccCCCCcee-eCCeEeEEEecceeccccCCeEEEEEecCCCCCC
Q psy12858 5 KDYFIGKAALQRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIY-RNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83 (131)
Q Consensus 5 k~dFIGk~AL~~~~~~g~~r~lvgl~~~~~~~~~~~~~~~g~~V~-~~g~~VG~vTSg~ySp~l~~~Iala~v~~~~~~~ 83 (131)
|.||||||++++++..|++||||+|..+ ..+ ++.|++|+ .+|+.||+|||++|||+++++||||||+.+
T Consensus 271 Kg~fiGqe~lar~~~~g~~rrlv~l~~~-~~~-----~~~g~~v~~~~g~~vG~vtS~~~sp~lg~~iala~v~~~---- 340 (375)
T 1wsr_A 271 AMDFPGAKVIVPQLKGRVQRRRVGLMCE-GAP-----MRAHSPILNMEGTKIGTVTSGCPSPSLKKNVAMGYVPCE---- 340 (375)
T ss_dssp HTCSTTHHHHHHHHTTCCSCEEEEEEES-SSC-----CCTTCEEECTTSCEEEEEEEEEEETTTTEEEEEEEECGG----
T ss_pred CCCCcCHHHHHHHHhcCCCEEEEEEEcC-Ccc-----CCCCCEEEcCCCcEEEEEecceecCcCCceEEEEEEChH----
Confidence 5699999999998888999999999653 333 78999999 589999999999999999999999999873
Q ss_pred cccccccCcEEEEEECCeEEEEEEEeCCCccCC
Q psy12858 84 VTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNV 116 (131)
Q Consensus 84 v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp 116 (131)
....|+.++|+++|+.++|+|+ .+|||+.
T Consensus 341 ---~~~~g~~~~v~~~g~~~~a~v~-~~Pf~~~ 369 (375)
T 1wsr_A 341 ---YSRPGTMLLVEVRRKQQMAVVS-KMPFVPT 369 (375)
T ss_dssp ---GCSTTCEEEEEETTEEEEEEEE-CSCSSCC
T ss_pred ---HcCCCCEEEEEECCEEEEEEEE-ccCCcCc
Confidence 1236788999999999999999 8999876
No 9
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.86 E-value=1.2e-21 Score=173.57 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=91.7
Q ss_pred CCCccHHHHHHhHhcC-CCeEEEEEEEecC-CCCCCcccCCCCceeeCCe--------EeEEEecceeccccCCeEEEEE
Q psy12858 6 DYFIGKAALQRQKDQG-VQKRLVMFVAEDL-DPDTDVWLWGSEPIYRNDQ--------FVGTITSAGYGFTMKKLIGLGY 75 (131)
Q Consensus 6 ~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~-~~~~~~~~~~g~~V~~~g~--------~VG~vTSg~ySp~l~~~Iala~ 75 (131)
++||||++|++++..| .+|+||+|.++++ .+ ++.|++|+.+|+ .||+|||++|||++|++|||||
T Consensus 851 K~fiGqe~l~r~~~~g~~rrrlv~l~~~~~~~~-----~~~g~~i~~~g~~~~~~~~~~vG~vtS~~~sp~lg~~iala~ 925 (965)
T 2gag_A 851 KDFIGNRSYSRADNAREDRKQLVSVLPVDKSLR-----LPEGAALVASDALASEGITPMEGWVTSSYDSPNLGRTFGLAL 925 (965)
T ss_dssp SCCTTGGGGGSHHHHCSSCEEEEEEEESSTTCC-----CCTTCEEEETTCCCBTTBCCCCEEEEEEEEETTTTEEEEEEE
T ss_pred CCcCCHHHHHHHHhcCCCceEEEEEEEeCCCCC-----CCCCCEEEECCccccccCCcceEEEEeeeEcCCCCceEEEEE
Confidence 4899999999988765 6778999999873 34 789999998875 8999999999999999999999
Q ss_pred ecCCCCCCcccccccCcEEEEEECCeEEEEEEEeCCCccCCCCCCcC
Q psy12858 76 IRHPSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQVARPY 122 (131)
Q Consensus 76 v~~~~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~~~r~~ 122 (131)
|+.+ ....|+.++|+++++.++|+|+ .+|||||+++|++
T Consensus 926 v~~~-------~~~~g~~~~v~~~~~~~~a~v~-~~pf~~~~~~r~~ 964 (965)
T 2gag_A 926 IKNG-------RNRIGEVLKTPVGDQLVDVVVS-ETVLYDPEGSRRD 964 (965)
T ss_dssp EETG-------GGCTTCEEEEEETTEEEEEEEE-CSCCSSTTCTTTT
T ss_pred EChh-------hcCCCCEEEEEECCEEEEEEEE-ccCCcCCCCcccC
Confidence 9873 2236788999999999999999 8999999999986
No 10
>3ttg_A Putative aminomethyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.00A {Leptospirillum rubarum}
Probab=99.85 E-value=2e-21 Score=156.12 Aligned_cols=95 Identities=22% Similarity=0.225 Sum_probs=81.6
Q ss_pred CCCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCceee----CCeEeEEEecceeccccCCeEEEEEecC
Q psy12858 4 VKDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIYR----NDQFVGTITSAGYGFTMKKLIGLGYIRH 78 (131)
Q Consensus 4 ~k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~~----~g~~VG~vTSg~ySp~l~~~Iala~v~~ 78 (131)
.|.||||||++++++..| ++||||+|.++++.+ ++.|++|+. +|+.||+|||++|||+++++||||||+.
T Consensus 256 ~KgcfiGqE~lar~~~~G~~~rrlv~l~~~~~~~-----~~~g~~v~~~~~~~g~~vG~VtS~~~sp~lg~~iaLa~v~~ 330 (355)
T 3ttg_A 256 NKGCYVGQEPVTRLKFQGHLNRSLAGFRLEGGPF-----PKMEFPVTLFNPKDGNEAGILTRTSSSDILGSGIGLGYIKR 330 (355)
T ss_dssp SSCCCTTHHHHHHHHHTSCCCEEEEEEEECC--------CCSCSSEEEECTTTCCEEEEEEEEEEETTTTEEEEEEEEEG
T ss_pred CCCCccCHHHHHHHHhcCCCceEEEEEEECCCCC-----CCCCCEEEeccCCCCceEEEEEEeeECCCCCCEEEEEEEeh
Confidence 356999999999998888 999999999988655 899999998 8999999999999999999999999998
Q ss_pred CCCCCcccccccCcEEEEEECCeEEEEEEEeCCCcc
Q psy12858 79 PSEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLS 114 (131)
Q Consensus 79 ~~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~ 114 (131)
+ ....|+.+++ |+.++|+|+ ++|||
T Consensus 331 ~-------~~~~g~~l~v---g~~~~a~v~-~~Pf~ 355 (355)
T 3ttg_A 331 N-------FSENGTELLL---PDAQLVRVH-SLPFV 355 (355)
T ss_dssp G-------GCSTTCEEEC---TTCCEEEEE-CSCCC
T ss_pred h-------hcCCCCEEEe---CCeeeEEEe-CCCCC
Confidence 3 1235677765 778999999 89996
No 11
>1vly_A SPOT PR51, unknown protein from 2D-PAGE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.30A {Escherichia coli} SCOP: b.44.2.1 d.250.1.1 PDB: 1nrk_A
Probab=99.75 E-value=5.3e-18 Score=135.27 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=79.1
Q ss_pred CCCCccHHHHHHhHhcC-CCeEEEEEEEecCCCCCCcccCCCCceee--CC--eEeEEEecceeccccCCeEEEEEecCC
Q psy12858 5 KDYFIGKAALQRQKDQG-VQKRLVMFVAEDLDPDTDVWLWGSEPIYR--ND--QFVGTITSAGYGFTMKKLIGLGYIRHP 79 (131)
Q Consensus 5 k~dFIGk~AL~~~~~~g-~~r~lvgl~~~~~~~~~~~~~~~g~~V~~--~g--~~VG~vTSg~ySp~l~~~Iala~v~~~ 79 (131)
|.||||||++++++..| .+|+++.+..+++.+ ++.|++|+. ++ +.||+|||++||| ++++||||||+.+
T Consensus 238 KgcyiGqE~lar~~~~G~~rr~l~~l~~~~~~~-----~~~g~~v~~~~~~~g~~vG~VtS~~~~~-~g~~iala~v~~~ 311 (338)
T 1vly_A 238 KGCYTGQEMVARAKFRGANKRALWLLAGSASRL-----PEAGEDLELKMGENWRRTGTVLAAVKLE-DGQVVVQVVMNND 311 (338)
T ss_dssp SCCCTTHHHHHHTTSTTSCCEEEEEEEECCSSC-----CCTTCCEEEEETTEEEEECEEEEEEECT-TSCEEEEEEEETT
T ss_pred CcccCCHHHHHHHHhcCCCceEEEEEecCCCCC-----CCCCCEeEeccCCCCccceEEEEEEECC-CCCEEEEEEEecc
Confidence 45799999999998888 577888887765544 899999982 34 8999999999998 9999999999873
Q ss_pred CCCCcccccccCcEEEEEECCeEEEEEEEeCCCccCCC
Q psy12858 80 SEQNVTNDFVTEGTYTLDVAGNRFQASAHIYPPLSNVQ 117 (131)
Q Consensus 80 ~~~~v~~~~~~g~~~~V~i~g~~~~A~v~~~~Pf~dp~ 117 (131)
+..|+.++| +|+.++|+|+ .+||+.|+
T Consensus 312 --------~~~g~~l~v--~g~~~~a~v~-~~Pf~~~~ 338 (338)
T 1vly_A 312 --------MEPDSIFRV--RDDANTLHIE-PLPYSLEE 338 (338)
T ss_dssp --------CCTTCCEES--TTCSSCEEEE-CCSSCCC-
T ss_pred --------cCCCCeEEE--CCCCceeEEe-CCCCCCCC
Confidence 345777777 8888999999 89997663
No 12
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=47.74 E-value=15 Score=24.03 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.8
Q ss_pred EEEEECCeEEEEEEEeCCCc
Q psy12858 94 YTLDVAGNRFQASAHIYPPL 113 (131)
Q Consensus 94 ~~V~i~g~~~~A~v~~~~Pf 113 (131)
++..+.|+++.|+|. ..||
T Consensus 62 l~fKv~GRKveaEVi-~sp~ 80 (107)
T 2jys_A 62 LTFKVQGRKVEAEVL-ASPY 80 (107)
T ss_dssp EEEEESSCEEEEEEE-EESS
T ss_pred EEEEEcCeEEEEEEe-cCcc
Confidence 356789999999999 6777
No 13
>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}
Probab=31.44 E-value=32 Score=20.11 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=13.9
Q ss_pred CceeeCCeEeEEEeccee
Q psy12858 46 EPIYRNDQFVGTITSAGY 63 (131)
Q Consensus 46 ~~V~~~g~~VG~vTSg~y 63 (131)
-+|..+|+.+|.+|....
T Consensus 26 ~~V~d~~~lvGIvT~~Di 43 (70)
T 3ghd_A 26 AVVMEGDEILGVVTERDI 43 (70)
T ss_dssp EEEEETTEEEEEEEHHHH
T ss_pred EEEEECCEEEEEEEHHHH
Confidence 355667899999998764
No 14
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli}
Probab=28.67 E-value=46 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=16.7
Q ss_pred cCCCCceeeCCeEeEEEecc
Q psy12858 42 LWGSEPIYRNDQFVGTITSA 61 (131)
Q Consensus 42 ~~~g~~V~~~g~~VG~vTSg 61 (131)
...|++|+..|.+||+.|..
T Consensus 63 I~~Ge~ViKYG~~IG~A~~d 82 (99)
T 3laz_A 63 IPANGEIIRYGEVIGYAVRA 82 (99)
T ss_dssp BCTTCEEEETTEEEEEESSC
T ss_pred cCCCCeEEECCcChhhcccc
Confidence 45689999999999998864
No 15
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=27.37 E-value=49 Score=21.66 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=16.2
Q ss_pred cCCCCceeeCCeEeEEEecc
Q psy12858 42 LWGSEPIYRNDQFVGTITSA 61 (131)
Q Consensus 42 ~~~g~~V~~~g~~VG~vTSg 61 (131)
...|++|...|.+||+.|..
T Consensus 70 I~~Ge~ViKYG~~IG~At~d 89 (105)
T 3k3s_A 70 IAKGANVIKYGLPIGYALAD 89 (105)
T ss_dssp BCTTCEEEETTEEEEEESSC
T ss_pred cCCCCeEEECCceeEEEccc
Confidence 35688999999999998764
No 16
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=27.35 E-value=42 Score=18.53 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=12.7
Q ss_pred ceeeCCeEeEEEeccee
Q psy12858 47 PIYRNDQFVGTITSAGY 63 (131)
Q Consensus 47 ~V~~~g~~VG~vTSg~y 63 (131)
+|..+|+.+|.||....
T Consensus 27 pV~d~~~l~Givt~~dl 43 (70)
T 3fio_A 27 VVMEGDEILGVVTERDI 43 (70)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEEEEHHHH
Confidence 55666889999997653
No 17
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A
Probab=26.02 E-value=82 Score=22.32 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=20.3
Q ss_pred CCCceee-CCeEeEEEecceeccccCCeEEEEE
Q psy12858 44 GSEPIYR-NDQFVGTITSAGYGFTMKKLIGLGY 75 (131)
Q Consensus 44 ~g~~V~~-~g~~VG~vTSg~ySp~l~~~Iala~ 75 (131)
.|-|++. +|+.||.++.+.-+..-+..+++|+
T Consensus 195 SGGPl~~~~g~lvGI~s~g~~c~~~~~~~~~~~ 227 (242)
T 1agj_A 195 SGSGIFNSNGELVGIHSSKVSHLDREHQINYGV 227 (242)
T ss_dssp TTCEEECTTSEEEEEEEEEEECSSTTCEEEEEE
T ss_pred CchHhcccCCEEEEEEeccccccCcCCCceeeE
Confidence 4678885 7899999887642222234556554
No 18
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=22.96 E-value=49 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.388 Sum_probs=13.4
Q ss_pred CceeeCCeEeEEEecce
Q psy12858 46 EPIYRNDQFVGTITSAG 62 (131)
Q Consensus 46 ~~V~~~g~~VG~vTSg~ 62 (131)
-+|..+|+.+|.||...
T Consensus 139 lpVvd~g~lvGivt~~D 155 (170)
T 4esy_A 139 IPVVQDGVPVGIVTRRD 155 (170)
T ss_dssp EEEEETTEEEEEEEHHH
T ss_pred EEEEECCEEEEEEEHHH
Confidence 36778899999999653
No 19
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=21.13 E-value=59 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.355 Sum_probs=18.5
Q ss_pred ceeeCCeEeEEEecceeccccCC
Q psy12858 47 PIYRNDQFVGTITSAGYGFTMKK 69 (131)
Q Consensus 47 ~V~~~g~~VG~vTSg~ySp~l~~ 69 (131)
.++.||..+|..|+.-|+.+...
T Consensus 36 ef~vdg~~vg~dt~apy~~~w~~ 58 (98)
T 3pe9_A 36 DFLVDGEVIGSDREAPYEYEWKA 58 (98)
T ss_dssp EEEETTEEEEEECSSSEEEEEEC
T ss_pred EEEECCEEecccccCCEEEEEEc
Confidence 45789999999999888877653
Done!