RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12858
         (131 letters)



>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase,
           C-terminal domain {Arthrobacter globiformis [TaxId:
           1665]}
          Length = 88

 Score = 64.5 bits (157), Expect = 2e-15
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 24  KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83
           +RL     +D        + G EP++  +Q VG +TSA YG+T+ K I   Y        
Sbjct: 2   RRLRCLTIDDGRSI----VLGKEPVFYKEQAVGYVTSAAYGYTVAKPIAYSY-------- 49

Query: 84  VTNDFVTEGTYTLDVAGNRFQASAHIYPP 112
           +        +  ++  G R  A+    P 
Sbjct: 50  LPGTVSVGDSVDIEYFGRRITATVTEDPL 78


>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein,
           GcvT {Thermotoga maritima [TaxId: 2336]}
          Length = 83

 Score = 42.9 bits (101), Expect = 3e-07
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 24  KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83
           ++LV                    + +N + VG ITS  +  T+ K I L  +    +  
Sbjct: 1   RKLVALELSGKRI-----ARKGYEVLKNGERVGEITSGNFSPTLGKSIALALVSKSVKIG 55

Query: 84  VTNDFVTEGTYTLDVAGNRFQA 105
                V          G   +A
Sbjct: 56  DQLGVV-------FPGGKLVEA 70


>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein,
           GcvT {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 89

 Score = 42.1 bits (99), Expect = 7e-07
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 24  KRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPSEQN 83
           ++LV F   D              +Y N + +G +TS      +   IG+ +++      
Sbjct: 1   RKLVHFKMIDKGI-----PREGYKVYANGEMIGEVTSGTLSPLLNVGIGIAFVK------ 49

Query: 84  VTNDFVTEGT-YTLDVAGNRFQA 105
              ++   G    +++ G R +A
Sbjct: 50  --EEYAKPGIEIEVEIRGQRKKA 70


>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
           GcvT {Escherichia coli [TaxId: 562]}
          Length = 90

 Score = 35.6 bits (82), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 17/85 (20%)

Query: 24  KRLVMFVAED---LDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLGYIRHPS 80
           ++LV  V  +   L  +  V         + +Q  G ITS  +  T+   I L  +    
Sbjct: 2   EKLVGLVMTEKGVLRNELPVRF----TDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI 57

Query: 81  EQNVTNDFVTEGTYTLDVAGNRFQA 105
            +             + +       
Sbjct: 58  GETA----------IVQIRNREMPV 72


>d1pj5a4 d.250.1.1 (A:428-742) N,N-dimethylglycine oxidase domain 3
           {Arthrobacter globiformis [TaxId: 1665]}
          Length = 315

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 5   KDYFIGKAALQRQKDQG 21
           K+ FIGK AL+ + ++ 
Sbjct: 298 KESFIGKGALEGRTEEA 314


>d1v5va2 d.250.1.1 (A:3-312) Glycine cleavage system T protein, GcvT
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 310

 Score = 33.0 bits (74), Expect = 0.006
 Identities = 12/18 (66%), Positives = 15/18 (83%), Gaps = 1/18 (5%)

Query: 5   KDYFIGKAALQRQKDQGV 22
           KD FIGK AL +QK++GV
Sbjct: 293 KD-FIGKDALLKQKERGV 309


>d1vloa2 d.250.1.1 (A:4-277) Glycine cleavage system T protein, GcvT
           {Escherichia coli [TaxId: 562]}
          Length = 274

 Score = 31.4 bits (70), Expect = 0.024
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 5   KDYFIGKAALQRQKDQG 21
              FIG+ AL+ Q++ G
Sbjct: 258 DRDFIGREALEVQREHG 274


>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT
           {Thermotoga maritima [TaxId: 2336]}
          Length = 278

 Score = 29.2 bits (64), Expect = 0.14
 Identities = 8/16 (50%), Positives = 12/16 (75%), Gaps = 1/16 (6%)

Query: 5   KDYFIGKAALQRQKDQ 20
           KD F+GK AL + K++
Sbjct: 262 KD-FVGKEALLKAKEK 276


>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
           [TaxId: 1423]}
          Length = 363

 Score = 26.2 bits (57), Expect = 1.4
 Identities = 12/62 (19%), Positives = 27/62 (43%)

Query: 15  QRQKDQGVQKRLVMFVAEDLDPDTDVWLWGSEPIYRNDQFVGTITSAGYGFTMKKLIGLG 74
            R   +   + ++  +    D +T +W    +   R+D ++ +  S  Y + + K I  G
Sbjct: 225 NRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 284

Query: 75  YI 76
           Y+
Sbjct: 285 YL 286


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,580
Number of extensions: 20792
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 13
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)