BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12860
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H ++ + K G+V +DFG
Sbjct: 475 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKE----GIVWEFIDFG 516
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H I+ E+ G+ +DFG
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 513
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H I+ E+ G+ +DFG
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 513
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H I+ E+ G+ +DFG
Sbjct: 468 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 509
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H I+ E+ G+ +DFG
Sbjct: 467 FEQLCINYTNERLQQFFNHHMFIL----EQEEYKKEGIAWEFIDFG 508
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H I+ + K G+ +DFG
Sbjct: 472 FEQLCINYTNERLQQFFNHHMFILEQEEYKKE----GIAWEFIDFG 513
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGK---ISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H V + + EKIN +DFG
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTF-------IDFG 507
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCIN+ NE LQ +FN H ++ E+ G+ +DFG
Sbjct: 475 FEQLCINFTNEXLQQFFNHHMFVL----EQEEYXXEGIEWEFIDFG 516
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCIN+ NE LQ +FN H ++ E+ G+ +DFG
Sbjct: 472 FEQLCINFTNEXLQQFFNHHMFVL----EQEEYXXEGIEWEFIDFG 513
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGK---ISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H V + + EKIN +DFG
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTF-------IDFG 507
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGK---ISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H V + + EKIN +DFG
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTF-------IDFG 507
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGK---ISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H V + + EKIN +DFG
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEKYLKEKINWTF-------IDFG 507
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGK---ISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H V + + EKIN +DFG
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTF-------IDFG 507
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 10/49 (20%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGK---ISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H V + + EKIN +DFG
Sbjct: 466 FEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTF-------IDFG 507
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H ++ + K G+ +DFG
Sbjct: 474 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKE----GIQWEFIDFG 515
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ +FN H ++ + K G+ +DFG
Sbjct: 473 FEQLCINYTNERLQQFFNHHMFVLEQEEYKKE----GIQWEFIDFG 514
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 477 FEQLCINYTNEKLQQFFNHH 496
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 477 FEQLCINYTNEKLQQFFNHH 496
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 465 FEQLCINYTNEKLQQFFNHH 484
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 477 FEQLCINYTNEKLQQFFNHH 496
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 465 FEQLCINYTNEKLQQFFNHH 484
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 465 FEQLCINYTNEKLQQFFNHH 484
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 465 FEQLCINYTNEKLQQFFNHH 484
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 465 FEQLCINYTNEKLQQFFNHH 484
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 477 FEQLCINYTNEKLQQFFNHH 496
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 465 FEQLCINYTNEKLQQFFNHH 484
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCIN+ NE LQ +FN H ++ E+ G+ + +DFG
Sbjct: 473 FEQLCINFTNEKLQQFFNHHMFVL----EQEEYKKEGIEWTFIDFG 514
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCIN+ NE LQ +FN H ++ E+ G+ +DFG
Sbjct: 472 FEQLCINFTNEKLQQFFNHHMFVL----EQEEYKKEGIEWEFIDFG 513
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINYANE LQ FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINYANE LQ FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINYANE LQ FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN I+ E+ G+ + +DFG
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFIL----EQEEYQREGIEWNFIDFG 517
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN I+ E+ G+ + +DFG
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFIL----EQEEYQREGIEWNFIDFG 517
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN I+ E+ G+ + +DFG
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFIL----EQEEYQREGIEWNFIDFG 517
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN I+ E+ G+ + +DFG
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFIL----EQEEYQREGIEWNFIDFG 517
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN ++ E+ G+ + +DFG
Sbjct: 445 FEQLCINYTNEKLQQLFNHTMFVL----EQEEYQREGIPWTFLDFG 486
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN I+ E+ G+ + +DFG
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFIL----EQEEYQREGIEWNFIDFG 517
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG 84
FEQLCINY NE LQ FN I+ E+ G+ + +DFG
Sbjct: 476 FEQLCINYTNEKLQQLFNHTMFIL----EQEEYQREGIEWNFIDFG 517
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 468 FEQFCINYCNEKLQQFFNE 486
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 442 FEQFCINYCNEKLQQFFNE 460
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 441 FEQFCINYCNEKLQQFFNE 459
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 467 FEQFCINYCNEKLQQFFNE 485
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 467 FEQFCINYCNEKLQQFFNE 485
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 441 FEQFCINYCNEKLQQFFNE 459
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 477 FEQFCINYCNEKLQQFFNE 495
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 477 FEQFCINYCNEKLQQFFNE 495
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 465 FEQFCINYCNEKLQQFFNE 483
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 467 FEQFCINYCNEKLQQFFNE 485
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 464 FEQFCINYCNEKLQQFFNE 482
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 468 FEQFCINYCNEKLQQFFNE 486
>pdb|3MQT|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|E Chain E, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|F Chain F, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|G Chain G, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|H Chain H, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|I Chain I, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|J Chain J, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|K Chain K, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|L Chain L, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|M Chain M, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|N Chain N, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|O Chain O, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|P Chain P, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|Q Chain Q, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|R Chain R, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|S Chain S, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|T Chain T, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|U Chain U, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|V Chain V, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|W Chain W, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|X Chain X, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
Length = 394
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 34 KQKLVFEQLCINYANEHLQYYFN----QHRAIVG--KISEKINTNLCGVVVSTVDFGSGG 87
K + F QL E + YF QH ++G K++ INT LCG +ST F +
Sbjct: 216 KARWTFRQL------EDIDLYFIEACLQHDDLIGHQKLAAAINTRLCGAEMSTTRFEAQE 269
Query: 88 W 88
W
Sbjct: 270 W 270
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 55 FNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEF-KSTIVGKISEKINLKEWVRFT 113
F + R ++G + + +++N VVV ++ + +R E +S ++ ++S ++ + W+
Sbjct: 88 FKEQRRVIGSLKKTVDSNFALVVVDSI---TAHYRAEENRSGLIAELSRQLQVLLWIARK 144
Query: 114 MNI 116
NI
Sbjct: 145 HNI 147
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 117 QSMYKRAPDSKLKK--GAVYLWIHNKDLQCKCPKIK 150
Q+ K PD + Y+W+H+ C CP I+
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 225
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 117 QSMYKRAPDSKLKK--GAVYLWIHNKDLQCKCPKIK 150
Q+ K PD + Y+W+H+ C CP I+
Sbjct: 133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 168
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 114 MNIQS-MYKRAPDSKLKK--GAVYLWIHNKDLQCKCPKIK 150
+N+ S K PD + Y+W+H+ C CP I+
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
>pdb|3ZMD|A Chain A, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|B Chain B, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|C Chain C, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|D Chain D, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
Length = 178
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 166 QPSGLTMNAKSIVVEWKDELHDRMR 190
QP GLTMN I+V + DRMR
Sbjct: 57 QPFGLTMNDYEILVNLSESEGDRMR 81
>pdb|4B56|A Chain A, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
pdb|4B56|B Chain B, Structure Of Ectonucleotide
Pyrophosphatase-Phosphodiesterase-1 (Npp1)
Length = 820
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 43 CINYANEHLQYYFNQHRAIVGKISEKINTNLCGV---VVSTVDFGSGGWRFEFKSTIVGK 99
CINY++ ++ V + E I+T C T+ F G+R E+ T G
Sbjct: 73 CINYSS-----VCQDKKSWVEETCESIDTPECPAEFESPPTLLFSLDGFRAEYLHTWGGL 127
Query: 100 ISEKINLKEWVRFTMNIQSMY 120
+ LK +T N++ MY
Sbjct: 128 LPVISKLKNCGTYTKNMRPMY 148
>pdb|4GTX|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTX|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Tmp
pdb|4GTY|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTY|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Gmp
pdb|4GTZ|A Chain A, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
pdb|4GTZ|B Chain B, Crystal Structure Of Mouse Enpp1 In Complex With Cmp
Length = 823
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 43 CINYANEHLQYYFNQHRAIVGKISEKINTNLCGV---VVSTVDFGSGGWRFEFKSTIVGK 99
CINY++ ++ V + E I+T C T+ F G+R E+ T G
Sbjct: 77 CINYSS-----VCQDKKSWVEETCESIDTPECPAEFESPPTLLFSLDGFRAEYLHTWGGL 131
Query: 100 ISEKINLKEWVRFTMNIQSMY 120
+ LK +T N++ MY
Sbjct: 132 LPVISKLKNCGTYTKNMRPMY 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,230,121
Number of Sequences: 62578
Number of extensions: 193293
Number of successful extensions: 490
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 83
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)