Query psy12860
Match_columns 198
No_of_seqs 167 out of 949
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 21:38:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 2.7E-35 6E-40 287.7 4.7 160 31-194 438-624 (1463)
2 PTZ00014 myosin-A; Provisional 100.0 4.7E-33 1E-37 267.6 3.7 161 31-195 472-658 (821)
3 KOG0164|consensus 100.0 1E-32 2.2E-37 255.1 3.8 162 31-196 385-580 (1001)
4 cd01384 MYSc_type_XI Myosin mo 100.0 1.6E-32 3.4E-37 260.0 4.0 161 31-195 377-562 (674)
5 cd01383 MYSc_type_VIII Myosin 100.0 5.1E-32 1.1E-36 256.7 4.2 161 31-195 375-568 (677)
6 cd01380 MYSc_type_V Myosin mot 100.0 9.6E-32 2.1E-36 255.5 5.3 161 31-195 378-581 (691)
7 cd01387 MYSc_type_XV Myosin mo 100.0 7.3E-32 1.6E-36 255.7 4.1 160 31-194 371-566 (677)
8 cd01378 MYSc_type_I Myosin mot 100.0 6.4E-32 1.4E-36 256.1 3.5 161 31-195 376-562 (674)
9 cd01381 MYSc_type_VII Myosin m 100.0 1.6E-31 3.5E-36 253.2 5.0 162 31-196 372-560 (671)
10 cd01379 MYSc_type_III Myosin m 100.0 1E-31 2.2E-36 253.8 2.9 153 31-194 383-544 (653)
11 cd01382 MYSc_type_VI Myosin mo 100.0 3.9E-31 8.5E-36 252.1 4.9 162 31-196 407-608 (717)
12 cd01385 MYSc_type_IX Myosin mo 100.0 4.1E-31 8.8E-36 251.2 4.5 161 31-195 386-581 (692)
13 cd01377 MYSc_type_II Myosin mo 100.0 9.5E-31 2.1E-35 248.8 4.7 162 31-196 384-583 (693)
14 smart00242 MYSc Myosin. Large 100.0 2.4E-30 5.2E-35 245.7 3.2 162 31-196 379-566 (677)
15 cd00124 MYSc Myosin motor doma 100.0 6.2E-30 1.3E-34 243.1 4.6 162 31-196 372-570 (679)
16 KOG0163|consensus 99.9 1.4E-28 3.1E-33 228.6 3.3 162 31-196 461-661 (1259)
17 KOG0162|consensus 99.9 6.7E-28 1.5E-32 223.6 5.4 160 31-194 393-578 (1106)
18 cd01386 MYSc_type_XVIII Myosin 99.9 1.6E-27 3.5E-32 228.4 5.8 122 31-156 383-543 (767)
19 KOG0160|consensus 99.9 4E-27 8.6E-32 224.8 3.6 159 31-193 378-560 (862)
20 PF00063 Myosin_head: Myosin h 99.9 1.1E-26 2.5E-31 221.1 0.1 161 31-195 374-586 (689)
21 KOG0161|consensus 99.9 3E-26 6.6E-31 232.2 -0.6 160 31-194 458-656 (1930)
22 cd03578 NTR_netrin-4_like NTR 99.9 6.2E-24 1.4E-28 158.8 1.1 102 91-195 8-110 (111)
23 cd03579 NTR_netrin-1_like NTR 99.8 3.4E-20 7.4E-25 140.3 1.4 108 87-196 3-110 (115)
24 KOG4229|consensus 99.7 6.3E-19 1.4E-23 172.3 4.2 122 31-156 437-569 (1062)
25 cd03581 NTR_Sfrp3_like NTR dom 99.7 9.8E-19 2.1E-23 131.7 1.1 98 92-195 8-105 (111)
26 cd03576 NTR_PCOLCE NTR domain, 99.7 1.7E-18 3.6E-23 132.5 1.6 105 88-197 20-124 (124)
27 KOG3512|consensus 99.7 1.2E-17 2.6E-22 149.7 5.7 102 93-196 486-588 (592)
28 smart00643 C345C Netrin C-term 99.4 5.6E-15 1.2E-19 111.0 -1.6 106 88-194 4-114 (114)
29 PF01759 NTR: UNC-6/NTR/C345C 99.4 2.4E-15 5.1E-20 112.3 -6.8 105 89-194 4-111 (111)
30 cd03523 NTR_like NTR_like doma 99.0 2.8E-11 6E-16 89.5 -0.0 94 93-189 7-103 (105)
31 cd03582 NTR_complement_C5 NTR/ 99.0 5.9E-11 1.3E-15 93.8 0.5 95 87-184 25-125 (150)
32 cd03574 NTR_complement_C345C N 99.0 1.3E-10 2.9E-15 91.3 0.6 95 87-184 18-120 (147)
33 cd03584 NTR_complement_C4 NTR/ 98.9 3.2E-10 6.9E-15 89.9 -0.1 97 87-186 27-128 (153)
34 cd03577 NTR_TIMP_like NTR doma 98.3 6.2E-08 1.3E-12 72.8 -1.8 84 92-183 15-100 (116)
35 cd03580 NTR_Sfrp1_like NTR dom 98.3 3E-07 6.6E-12 70.6 1.3 95 93-197 25-126 (126)
36 cd03583 NTR_complement_C3 NTR/ 98.2 2.1E-07 4.5E-12 73.6 -0.0 97 86-185 22-123 (149)
37 cd03575 NTR_WFIKKN NTR domain, 96.8 0.00068 1.5E-08 50.7 1.7 86 93-185 8-99 (109)
38 PF00965 TIMP: Tissue inhibito 91.8 0.016 3.5E-07 47.0 -2.8 79 109-196 43-121 (181)
39 cd03585 NTR_TIMP NTR domain, T 48.1 3.6 7.9E-05 33.6 -1.3 82 93-182 16-108 (183)
40 KOG3794|consensus 47.0 12 0.00026 34.2 1.7 8 3-10 225-232 (453)
41 smart00206 NTR Tissue inhibito 46.2 3.6 7.7E-05 33.3 -1.6 84 91-182 14-103 (172)
42 PF09322 DUF1979: Domain of un 26.0 49 0.0011 21.7 1.6 21 132-152 6-26 (58)
43 PF09887 DUF2114: Uncharacteri 22.1 36 0.00079 31.1 0.5 22 72-95 183-204 (448)
44 KOG2422|consensus 20.7 22 0.00048 34.2 -1.1 13 185-197 345-357 (665)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=2.7e-35 Score=287.70 Aligned_cols=160 Identities=21% Similarity=0.263 Sum_probs=129.8
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee-----cccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS-----TIVGKISE--K 103 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde-----gi~~~V~~--~ 103 (198)
.|+|+.||||||||||+||+|||.|++|+|++|| +||.+|||+|++|+|.|||+||||+| ||++.+++ +
T Consensus 438 FEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQ----EeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~ 513 (1463)
T COG5022 438 FEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQ----EEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECV 513 (1463)
T ss_pred hhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhc
Confidence 5999999999999999999999999999999965 99999999999999999999999987 68888877 3
Q ss_pred ccchhHHHHHHHHHHhhcc--CC---CCCCCCCceEEEEecCccccCCCCcc-cCccee------eecccCCC------C
Q psy12860 104 INLKEWVRFTMNIQSMYKR--AP---DSKLKKGAVYLWIHNKDLQCKCPKIK-LNKPYL------ILGKEKEG------N 165 (198)
Q Consensus 104 ~~~g~~~~f~~kv~~v~K~--~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~-~~r~yL------Ilg~~~~~------~ 165 (198)
-+.+++.+|+.++...+.. +| .+|++.+.|.|.||||||+|++.|+. .|+|-| +++.+... +
T Consensus 514 ~p~atd~s~~sKL~~~l~~~~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~ 593 (1463)
T COG5022 514 MPHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFD 593 (1463)
T ss_pred CCCCCchHHHHHHHHHhccccCccccccccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhh
Confidence 4556678999999888872 12 35677779999999999999999964 478776 23322110 0
Q ss_pred --CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860 166 --QPSGLTMNAKSIVVEWKDELHDRMRQFQR 194 (198)
Q Consensus 166 --~~~~l~~~~~Svv~~wk~sl~~lm~~l~r 194 (198)
....--..++|++..|+.|+.+||..|.+
T Consensus 594 ~~~~~~~K~~~pT~gs~~K~sl~~Lm~tl~s 624 (1463)
T COG5022 594 DEENIESKGRFPTLGSRFKESLNSLMSTLNS 624 (1463)
T ss_pred hhhhccccCCCCcHHHHHHHHHHHHHHHHHh
Confidence 00011245689999999999999999875
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.97 E-value=4.7e-33 Score=267.58 Aligned_cols=161 Identities=16% Similarity=0.136 Sum_probs=129.2
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----cccccccc--cc
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISE--KI 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~--~~ 104 (198)
.|+|+.|||||||||||||+|||+|++++|..|| +||.+|||+|++|+|.||++||||++ ||+++|++ .-
T Consensus 472 FE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~Eq----eeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~ 547 (821)
T PTZ00014 472 FEVFKNNSLEQLFINITNEMLQKNFVDIVFERES----KLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLA 547 (821)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCC
Confidence 4899999999999999999999999999999865 99999999999999999999999976 78888877 33
Q ss_pred cchhHHHHHHHHHHhhccCC---CCCC-CCCceEEEEecCccccCCCCccc-Cccee------eecccCCC-------C-
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP---DSKL-KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG-------N- 165 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p---~~ri-~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~-------~- 165 (198)
+.+++.+|+.++++.++.+| .++. ....|+|.||||+|+|++.++.. |+|.| +|..+... .
T Consensus 548 p~~tD~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~ 627 (821)
T PTZ00014 548 PGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGV 627 (821)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhccc
Confidence 45677899999999888764 2332 24689999999999999999755 78776 22222210 0
Q ss_pred -CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860 166 -QPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 166 -~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
...+-.....||+.+|+.||..||..|.+-
T Consensus 628 ~~~~~~~~k~~tv~s~Fk~qL~~Lm~~L~~t 658 (821)
T PTZ00014 628 EVEKGKLAKGQLIGSQFLNQLDSLMSLINST 658 (821)
T ss_pred ccccccccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 011122345799999999999999999764
No 3
>KOG0164|consensus
Probab=99.97 E-value=1e-32 Score=255.08 Aligned_cols=162 Identities=17% Similarity=0.180 Sum_probs=130.8
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc---
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--- 103 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--- 103 (198)
+|.|+.|||||||||||||+|||.|+..+++. ||+||++|||.|.+|+|++|++|+||.| ||++++++.
T Consensus 385 feif~~NSFEQfcINYCNEKLQQlFIel~LKq----EQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~ 460 (1001)
T KOG0164|consen 385 FEIFQDNSFEQFCINYCNEKLQQLFIELVLKQ----EQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLR 460 (1001)
T ss_pred EEeecCCcHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcC
Confidence 69999999999999999999999999999987 4599999999999999999999999987 899999873
Q ss_pred ccchhHHHHHHHHHHhhccCC----------CCCCCCCceEEEEecCccccCCCCccc-Ccceee------ecc-cCC--
Q psy12860 104 INLKEWVRFTMNIQSMYKRAP----------DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGK-EKE-- 163 (198)
Q Consensus 104 ~~~g~~~~f~~kv~~v~K~~p----------~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~-~~~-- 163 (198)
+..-++..|+..+...++.+| ...+..++|.|.||||||+|++.||.. |+|.|. |-. .++
T Consensus 461 ~G~vtD~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l 540 (1001)
T KOG0164|consen 461 PGTVTDETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLL 540 (1001)
T ss_pred CCccchHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchH
Confidence 444456789998888887764 122345689999999999999999866 555441 222 222
Q ss_pred ---CC----CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 164 ---GN----QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 164 ---~~----~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
.| ....+.-.|.|.+++|+.|+..||..|+.++
T Consensus 541 ~~~fpeG~~~~~~~tkRP~Tagt~Fk~Sm~~Lv~nL~sKe 580 (1001)
T KOG0164|consen 541 KSLFPEGNPDIAEVTKRPPTAGTLFKNSMAALVKNLASKE 580 (1001)
T ss_pred HHhCCCCChhHHhhhcCCCcHHHHHHHHHHHHHHHHhhcC
Confidence 11 1113456889999999999999999999876
No 4
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.97 E-value=1.6e-32 Score=260.05 Aligned_cols=161 Identities=20% Similarity=0.252 Sum_probs=130.2
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||||||||||+||++|++++|..|| ++|.+|||+|+.|+|.||++|+||++ ||+++|++. -
T Consensus 377 FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq----~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~ 452 (674)
T cd01384 377 FESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQ----EEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMF 452 (674)
T ss_pred ccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcC
Confidence 4899999999999999999999999999999865 99999999999999999999999976 688888762 3
Q ss_pred cchhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC---------C
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG---------N 165 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~---------~ 165 (198)
+.+++..|+.+++..++.+| .++..+..|+|.||||+|+|++.|+.. |+|.| +|..++.. +
T Consensus 453 p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~ 532 (674)
T cd01384 453 PKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLP 532 (674)
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccc
Confidence 45667899999999888764 355667799999999999999999755 77776 22222210 0
Q ss_pred CCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860 166 QPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 166 ~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
....-.....||+.+|+.||..||..|.+-
T Consensus 533 ~~~~~~~k~~tv~~~fk~~L~~L~~~L~~t 562 (674)
T cd01384 533 EETSKSSKFSSIGSRFKQQLQSLMETLSTT 562 (674)
T ss_pred cccccccccccHHHHHHHHHHHHHHHHhcc
Confidence 011122345799999999999999999763
No 5
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.97 E-value=5.1e-32 Score=256.67 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=128.3
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|||||||||||||+||++|+++||..|| ++|..|||+|..|+|.||++||||++ ||+++|++. -
T Consensus 375 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~Eq----eeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~ 450 (677)
T cd01383 375 FESFDKNSFEQFCINYANERLQQHFNRHLFKLEQ----EEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTF 450 (677)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcC
Confidence 5899999999999999999999999999999865 99999999999999999999999975 788888773 3
Q ss_pred cchhHHHHHHHHHHhhccCCC-CCCCCCceEEEEecCccccCCCCccc-Ccceee------ecccCC-------------
Q psy12860 105 NLKEWVRFTMNIQSMYKRAPD-SKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGKEKE------------- 163 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p~-~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~~~~------------- 163 (198)
+.+++.+|+.+++..++.+|. ...+...|.|.||||+|+|++.|+.. |+|.|- |..+..
T Consensus 451 p~~tD~~f~~kl~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~~f~~~~~~~ 530 (677)
T cd01383 451 PNATDLTFANKLKQHLKTNSCFRGERGGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQLFASSMLIQ 530 (677)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHHHHHhhhhcc
Confidence 456679999999988887642 22235689999999999999999755 777651 211110
Q ss_pred CC--C----CCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860 164 GN--Q----PSGLTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 164 ~~--~----~~~l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
++ + .........||+.+|+.||..||..|.+-
T Consensus 531 s~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t 568 (677)
T cd01383 531 SPVVGPLYVASAADSQKLSVGTKFKGQLFKLMQQLENT 568 (677)
T ss_pred ccccccccccccccccCcchHHHHHHHHHHHHHHHhCC
Confidence 00 0 01122356899999999999999999753
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.97 E-value=9.6e-32 Score=255.50 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=128.4
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---ccccccccc--cc
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISEK--IN 105 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~~--~~ 105 (198)
.|+|+.|+|||||||||||+||++|++++|..|| ++|.+|||+|+.|+|.||++||||++ ||+++|++. -+
T Consensus 378 FE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq----~~Y~~EgI~~~~i~f~DN~~~ldLie~~~Gil~lLdee~~~p 453 (691)
T cd01380 378 FETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQ----EEYLKEGIEWTFIDFYDNQPCIDLIESKLGILSLLDEECRLP 453 (691)
T ss_pred ccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHHhcCCCCccccCCCCHHHHHHHhCCCchHHHhHHhhcCC
Confidence 4899999999999999999999999999999855 99999999999999999999999986 677788763 34
Q ss_pred chhHHHHHHHHHHhhc--cCC---CCCCCCCceEEEEecCccccCCCCccc-Ccceee------ecccCC----------
Q psy12860 106 LKEWVRFTMNIQSMYK--RAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGKEKE---------- 163 (198)
Q Consensus 106 ~g~~~~f~~kv~~v~K--~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~~~~---------- 163 (198)
.|++..|+.+++..+. .+| .++.....|+|.||||+|+|++.|+.. |+|.|- |..+..
T Consensus 454 ~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~ 533 (691)
T cd01380 454 KGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAA 533 (691)
T ss_pred CCChHHHHHHHHHHhcccCCCCccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhh
Confidence 5667899999998887 444 355556789999999999999999755 777651 111110
Q ss_pred --CC---C-----------CCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860 164 --GN---Q-----------PSGLTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 164 --~~---~-----------~~~l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
.. . ..+......||+.+|+.||..||..|.+-
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~fk~qL~~L~~~L~~t 581 (691)
T cd01380 534 ELASSSSSSAKSKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNST 581 (691)
T ss_pred cccccccccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhcc
Confidence 00 0 01122456799999999999999999753
No 7
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.97 E-value=7.3e-32 Score=255.70 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=126.8
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|||||||||||||+||++|+++||..|| ++|.+|||+|+.|+|.||++|+||++ ||+++|++. -
T Consensus 371 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq----~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~ 446 (677)
T cd01387 371 FEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQ----EEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCF 446 (677)
T ss_pred cccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcC
Confidence 4899999999999999999999999999999855 99999999999999999999999976 688888773 3
Q ss_pred cchhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC-----------
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE----------- 163 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~----------- 163 (198)
+.+++.+|+.+++..+..+| .++.....|+|.||||+|+|++.++.. |+|.| +|..+..
T Consensus 447 p~~td~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~ 526 (677)
T cd01387 447 PQATDHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHA 526 (677)
T ss_pred CCCchHHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhh
Confidence 45667899999988776654 344556689999999999999999755 77765 2221110
Q ss_pred ---CC------CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860 164 ---GN------QPSGLTMNAKSIVVEWKDELHDRMRQFQR 194 (198)
Q Consensus 164 ---~~------~~~~l~~~~~Svv~~wk~sl~~lm~~l~r 194 (198)
.+ ..++......||+.+|+.||..||..|.+
T Consensus 527 ~~~~~~~~~~~s~~~~~~~~~tv~~~f~~sL~~L~~~l~~ 566 (677)
T cd01387 527 AQRAPKRLGKSSSGTRLYKAHTVAAKFQQSLLDLVEKMER 566 (677)
T ss_pred cccccccccCCCccccccCCCcHHHHHHHHHHHHHHHHhc
Confidence 00 00111223579999999999999999975
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.97 E-value=6.4e-32 Score=256.12 Aligned_cols=161 Identities=14% Similarity=0.133 Sum_probs=129.1
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee-----ccccccccc--
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS-----TIVGKISEK-- 103 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde-----gi~~~V~~~-- 103 (198)
.|+|+.|+|||||||||||+||++|++++|..|| ++|.+|||+|+.|+|.||++|+||++ ||+++|++.
T Consensus 376 FE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq----~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~ 451 (674)
T cd01378 376 FEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQ----EEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCA 451 (674)
T ss_pred ccccccccHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHc
Confidence 4899999999999999999999999999999855 99999999999999999999999976 577788763
Q ss_pred cc-chhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC--------
Q psy12860 104 IN-LKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG-------- 164 (198)
Q Consensus 104 ~~-~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~-------- 164 (198)
-+ .+++.+|+.+++..++.+| .++.....|+|.||||+|+|++.++.. |+|.| +|..+...
T Consensus 452 ~p~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~ 531 (674)
T cd01378 452 TPHEGTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPE 531 (674)
T ss_pred CCCCCChHHHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcc
Confidence 33 5678899999999888764 234456689999999999999999755 77765 12222110
Q ss_pred CCCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860 165 NQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 165 ~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
.........+.||+.+|+.||..||..|.+-
T Consensus 532 ~~~~~~~~~~~tv~~~fk~qL~~Lm~~L~~t 562 (674)
T cd01378 532 KSDADSKKRPTTAGFKIKTSANALVETLMKC 562 (674)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHHHcc
Confidence 0011112345799999999999999999864
No 9
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.97 E-value=1.6e-31 Score=253.18 Aligned_cols=162 Identities=18% Similarity=0.188 Sum_probs=128.9
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||||||||||+||++|++++|..|| ++|..|||+|.+|+|.||++||||++ ||+++|++. -
T Consensus 372 FE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq----~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~ 447 (671)
T cd01381 372 FENFDVNSFEQLCINFANENLQQFFVQHIFKLEQ----EEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKF 447 (671)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcC
Confidence 5899999999999999999999999999999855 99999999999999999999999976 788888873 3
Q ss_pred cchhHHHHHHHHHHhhccCC---CCCC-CCCceEEEEecCccccCCCCccc-Cccee------eecccCC--------CC
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP---DSKL-KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE--------GN 165 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p---~~ri-~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~--------~~ 165 (198)
+.|++..|+.+++..++.++ .++. ....|+|.||||+|+|++.|+.. |+|.| +|..+.. ..
T Consensus 448 p~~td~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~ 527 (671)
T cd01381 448 PKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQAD 527 (671)
T ss_pred CCCCHHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhccc
Confidence 45667899999998887764 1222 34589999999999999999755 77766 1221111 00
Q ss_pred --CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 166 --QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 166 --~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
..........||+.+|+.||..||..|.+-.
T Consensus 528 ~~~~~~~~~k~~tv~~~fk~qL~~L~~~L~~t~ 560 (671)
T cd01381 528 VEMGAETRKKKPTLSSQFRRSLDLLMRTLSSCQ 560 (671)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHHHHhcCC
Confidence 0111233467999999999999999998643
No 10
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.97 E-value=1e-31 Score=253.75 Aligned_cols=153 Identities=20% Similarity=0.194 Sum_probs=125.3
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||||||||||+||++|+++||..|| ++|.+|||+|+.|+|.||++||||++ ||+++|++. -
T Consensus 383 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq----~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~ 458 (653)
T cd01379 383 FENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQ----QEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRF 458 (653)
T ss_pred cccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcC
Confidence 4899999999999999999999999999999855 99999999999999999999999964 888888873 3
Q ss_pred cchhHHHHHHHHHHhhccCC--CCCCCCCceEEEEecCccccCCCCccc-CcceeeecccCCCCCCCCcccCcceeEEec
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP--DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLILGKEKEGNQPSGLTMNAKSIVVEW 181 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p--~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLIlg~~~~~~~~~~l~~~~~Svv~~w 181 (198)
+.|++..|+.+++..++... .++..+..|+|.||||+|+|++.|+.. |+|.|--.-. .++.+..||+.+|
T Consensus 459 ~~~td~~~~~kl~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~-------~ll~~S~tv~~~f 531 (653)
T cd01379 459 PQATDQTLVEKFEDNLKSKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIV-------LLLRSSQTVASYF 531 (653)
T ss_pred CCCCHHHHHHHHHHhcCCCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHH-------HHHHhCcHHHHHH
Confidence 45667899999988776432 244446689999999999999999766 7776621100 1111227999999
Q ss_pred hHHHHHHHHHHHH
Q psy12860 182 KDELHDRMRQFQR 194 (198)
Q Consensus 182 k~sl~~lm~~l~r 194 (198)
+.+|..||..|.+
T Consensus 532 r~~l~~L~~~l~~ 544 (653)
T cd01379 532 RYSLMDLLSKMVV 544 (653)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999986
No 11
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=3.9e-31 Score=252.06 Aligned_cols=162 Identities=19% Similarity=0.235 Sum_probs=127.0
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||||||||||+||++|+++||..|| ++|.+|||+|+.|+|.||++|+||++ ||+++|++. -
T Consensus 407 FE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq----~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~ 482 (717)
T cd01382 407 FEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQ----ELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRL 482 (717)
T ss_pred cccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcC
Confidence 4899999999999999999999999999999865 99999999999999999999999976 788888873 3
Q ss_pred cchhHHHHHHHHHHhhccCCC---CC---C-------CCCceEEEEecCccccCCCCccc-Cccee------eecccCC-
Q psy12860 105 NLKEWVRFTMNIQSMYKRAPD---SK---L-------KKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE- 163 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p~---~r---i-------~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~- 163 (198)
+.+++..|+.+++..++.++. ++ + ....|+|.||||+|+|++.++.. |+|.| +|..+..
T Consensus 483 p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~S~n~ 562 (717)
T cd01382 483 PQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESKDK 562 (717)
T ss_pred CCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHhCchH
Confidence 456678999999988876531 11 1 12479999999999999999755 67665 2222111
Q ss_pred -----------CC--CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 164 -----------GN--QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 164 -----------~~--~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
.+ .+........||+.+|+.||+.||..|.+-.
T Consensus 563 ~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~ 608 (717)
T cd01382 563 FLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTG 608 (717)
T ss_pred HHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccC
Confidence 00 0111223457999999999999999998643
No 12
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.96 E-value=4.1e-31 Score=251.15 Aligned_cols=161 Identities=20% Similarity=0.282 Sum_probs=127.2
Q ss_pred cccccc-cchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--
Q psy12860 31 IRNKQK-LVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK-- 103 (198)
Q Consensus 31 ~e~F~~-Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~-- 103 (198)
.|+|+. |+|||||||||||+||++|++++|..|| ++|..|||+|..|+|.||++||||++ ||+++|++.
T Consensus 386 FE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq----~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~ 461 (692)
T cd01385 386 FEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQ----EEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESN 461 (692)
T ss_pred cccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhc
Confidence 489999 9999999999999999999999999855 99999999999999999999999976 788888773
Q ss_pred ccchhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC---------C
Q psy12860 104 INLKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE---------G 164 (198)
Q Consensus 104 ~~~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~---------~ 164 (198)
-+.+++..|+.+++..++.++ .++.....|+|.||||+|+|++.++.. |+|.| +|..+.. .
T Consensus 462 ~p~~td~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~ 541 (692)
T cd01385 462 FPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMD 541 (692)
T ss_pred CCCCCHHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccC
Confidence 345667899999999887764 234446689999999999999999755 67665 1211111 0
Q ss_pred C---C-----CCC-cccCcceeEEechHHHHHHHHHHHHh
Q psy12860 165 N---Q-----PSG-LTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 165 ~---~-----~~~-l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
+ . +.. -.....||+.+|+.+|..||..|.+-
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~tV~~~f~~~L~~L~~~L~~t 581 (692)
T cd01385 542 PVAVFRWAVLRAAFRAMAAPSVSAQFQTSLNKLMETLGKA 581 (692)
T ss_pred cccccccccccccccCccCCcHHHHHHHHHHHHHHHHhcc
Confidence 0 0 000 01224699999999999999999863
No 13
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.96 E-value=9.5e-31 Score=248.77 Aligned_cols=162 Identities=20% Similarity=0.203 Sum_probs=126.5
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee----ccccccccc--
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS----TIVGKISEK-- 103 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde----gi~~~V~~~-- 103 (198)
.|+|+.|||||||||||||+||++|+++||..|| ++|.+|||+|+.|+|. ||++||||++ ||+++|++.
T Consensus 384 FE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq----~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~ 459 (693)
T cd01377 384 FEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQ----EEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECV 459 (693)
T ss_pred ccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhc
Confidence 4899999999999999999999999999999865 9999999999999995 9999999976 688888873
Q ss_pred ccchhHHHHHHHHHHhhccCCC-----CCCCCCceEEEEecCccccCCCCccc-Ccceee------ecccCC--------
Q psy12860 104 INLKEWVRFTMNIQSMYKRAPD-----SKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLI------LGKEKE-------- 163 (198)
Q Consensus 104 ~~~g~~~~f~~kv~~v~K~~p~-----~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLI------lg~~~~-------- 163 (198)
-+.|++..|+.+++..+..++. ++.....|+|.||||+|+|++.+|.. |+|.|. |..+..
T Consensus 460 ~~~~tD~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~ 539 (693)
T cd01377 460 FPKATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFK 539 (693)
T ss_pred CCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhh
Confidence 3456678999999988876531 22335589999999999999999755 777662 221111
Q ss_pred CC-----------CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 164 GN-----------QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 164 ~~-----------~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
.. ..........||+.+|+.||..||..|.+-.
T Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~F~~qL~~L~~~L~~t~ 583 (693)
T cd01377 540 DYAEASGDGGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTN 583 (693)
T ss_pred hhcccccccccccCCCCcCCccccHHHHHHHHHHHHHHHHhccC
Confidence 00 0001112347899999999999999998643
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.96 E-value=2.4e-30 Score=245.74 Aligned_cols=162 Identities=22% Similarity=0.277 Sum_probs=130.0
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||||||||||+||++|++++|..|| ++|.+|||+|+.|+|.||++||||++ ||+++|++. -
T Consensus 379 FE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq----~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~ 454 (677)
T smart00242 379 FEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQ----EEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRF 454 (677)
T ss_pred ccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHH----HHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcC
Confidence 4899999999999999999999999999999855 99999999999999999999999976 788888773 3
Q ss_pred cchhHHHHHHHHHHhhccCC---CC-CCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC--------CC
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP---DS-KLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE--------GN 165 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p---~~-ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~--------~~ 165 (198)
+.+++..|+.++++.+..++ .+ +.....|+|.||||+|.|++.++.. |+|.| +|..+.. ..
T Consensus 455 ~~~td~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~ 534 (677)
T smart00242 455 PKATDQTFLEKLNQTHEKHPHFSKPRKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSG 534 (677)
T ss_pred CCCCHHHHHHHHHHHhcCCCCccCCCCCCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccc
Confidence 45678999999999887764 22 2345689999999999999999765 77766 2222211 00
Q ss_pred -CCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 166 -QPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 166 -~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
..........||+.+|+.+|..||..|.+-.
T Consensus 535 ~~~~~~~~~~~tv~~~fk~~L~~L~~~l~~t~ 566 (677)
T smart00242 535 ESNAGSKKRFRTVGSQFKESLNKLMDTLNSTN 566 (677)
T ss_pred cccccccCCCCcHHHHHHHHHHHHHHHHhccC
Confidence 0112334678999999999999999998644
No 15
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.96 E-value=6.2e-30 Score=243.10 Aligned_cols=162 Identities=20% Similarity=0.256 Sum_probs=129.1
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||||||||||+||++|++++|..|| ++|..|||+|+.|+|.||++||||++ ||+++|++. -
T Consensus 372 FE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq----~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~ 447 (679)
T cd00124 372 FEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQ----EEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLF 447 (679)
T ss_pred cccCCCCCHHHHhcccchHHHHHHHHHHHHHHHH----HHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCC
Confidence 4899999999999999999999999999999855 99999999999999999999999976 677788763 3
Q ss_pred cchhHHHHHHHHHHhhccCCC----CCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCC--------C-
Q psy12860 105 NLKEWVRFTMNIQSMYKRAPD----SKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKE--------G- 164 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p~----~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~--------~- 164 (198)
+.+++..|+.+++..++.++. ++.....|+|.||||+|+|++.++.. |+|.| +|..+.. .
T Consensus 448 ~~~~d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~ 527 (679)
T cd00124 448 PKGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESE 527 (679)
T ss_pred CCCCHHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccc
Confidence 456678999999998887641 23345689999999999999999755 77765 1221111 0
Q ss_pred -----------CCCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 165 -----------NQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 165 -----------~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
.........+.|++.+|+.+|..||..|.+-.
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~tv~~~f~~qL~~L~~~L~~t~ 570 (679)
T cd00124 528 LSKTGNSSTGSTSSKGKKKKGQTVGSQFRTSLDALMATLNSTE 570 (679)
T ss_pred cccccccccccccccccccCCCcHHHHHHHHHHHHHHHHhcCC
Confidence 00112234678999999999999999998643
No 16
>KOG0163|consensus
Probab=99.94 E-value=1.4e-28 Score=228.57 Aligned_cols=162 Identities=19% Similarity=0.280 Sum_probs=126.5
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|.+|||||||||||||+||++||..|++.|| +.|++||+++..|+|.||++||+|++ ||+.+|++. -
T Consensus 461 FEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQ----ElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEakl 536 (1259)
T KOG0163|consen 461 FEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQ----ELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKL 536 (1259)
T ss_pred ceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccC
Confidence 5999999999999999999999999999999754 99999999999999999999999987 677777763 3
Q ss_pred cchhHHHHHHHHHHhhccC-----C-CCC------CC-CCceEEEEecCccccCCCCcccC-ccee--------------
Q psy12860 105 NLKEWVRFTMNIQSMYKRA-----P-DSK------LK-KGAVYLWIHNKDLQCKCPKIKLN-KPYL-------------- 156 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~-----p-~~r------i~-rg~F~I~H~AgdV~Y~cp~L~~~-r~yL-------------- 156 (198)
+..++.+|+..+|+.++.+ | +++ ++ ...|.|+||||.|+|.+..|.+. .|.|
T Consensus 537 P~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~es~~~ 616 (1259)
T KOG0163|consen 537 PKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIEESDNP 616 (1259)
T ss_pred CCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHHhccch
Confidence 4455789999999998876 2 122 22 23699999999999999987664 4444
Q ss_pred ----eecccCCC-CCCCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 157 ----ILGKEKEG-NQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 157 ----Ilg~~~~~-~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
+++++.+. .-+.+..+..-||+..|+.+|..||.+|..-+
T Consensus 617 ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stG 661 (1259)
T KOG0163|consen 617 LLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTG 661 (1259)
T ss_pred HHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcC
Confidence 12221111 11123345567999999999999999997643
No 17
>KOG0162|consensus
Probab=99.94 E-value=6.7e-28 Score=223.58 Aligned_cols=160 Identities=12% Similarity=0.128 Sum_probs=130.2
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee-----ccccccccc--
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS-----TIVGKISEK-- 103 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde-----gi~~~V~~~-- 103 (198)
.|+|++|+||||||||.||+|||.|++.+++.|| +||.+|||.|..|+|+||..++||+| ||++.+++.
T Consensus 393 FEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQ----EeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~A 468 (1106)
T KOG0162|consen 393 FEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQ----EEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCA 468 (1106)
T ss_pred eeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhH----HHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHH
Confidence 5899999999999999999999999999999855 99999999999999999999999998 788888772
Q ss_pred ----ccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCccc-Cccee------eecccCCC------C-
Q psy12860 104 ----INLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGKEKEG------N- 165 (198)
Q Consensus 104 ----~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~~~~~------~- 165 (198)
...|.+..|+.+++..+..+|--..+...|.|.||||||+|+++||-. |+|.| +|+.+... |
T Consensus 469 t~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe 548 (1106)
T KOG0162|consen 469 TAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPE 548 (1106)
T ss_pred HhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCch
Confidence 345557789999988888875333445689999999999999999855 77776 45543320 1
Q ss_pred -CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860 166 -QPSGLTMNAKSIVVEWKDELHDRMRQFQR 194 (198)
Q Consensus 166 -~~~~l~~~~~Svv~~wk~sl~~lm~~l~r 194 (198)
-.....-.|+|.+...+.|-+.|++.|.+
T Consensus 549 ~v~~dskrRP~Tag~kIkkqANdLVeTLmK 578 (1106)
T KOG0162|consen 549 NVDADSKRRPPTAGDKIKKQANDLVETLMK 578 (1106)
T ss_pred hhcccccCCCCCchhhHHhhHHHHHHHHHh
Confidence 01123446789999999999999998875
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.94 E-value=1.6e-27 Score=228.38 Aligned_cols=122 Identities=20% Similarity=0.145 Sum_probs=98.6
Q ss_pred cccccc------cchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeee-ccCccccceee---------
Q psy12860 31 IRNKQK------LVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDF-GSGGWRFEFKS--------- 94 (198)
Q Consensus 31 ~e~F~~------Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f-~dN~~cidLde--------- 94 (198)
.|+|++ |||||||||||||+|||+|+++||..|| +||.+|||+|+++.+ .||++||||++
T Consensus 383 FE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq----~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~ 458 (767)
T cd01386 383 FQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPL----ERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVP 458 (767)
T ss_pred ccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHhhcCCccccccCCCchhhHHHhhccccccccc
Confidence 488874 8999999999999999999999999865 999999999987655 68999999854
Q ss_pred ---------cccccccc--cccchhHHHHHHHHHHhhccCCC-----CCC----CCCceEEEEecC--ccccCCCCccc-
Q psy12860 95 ---------TIVGKISE--KINLKEWVRFTMNIQSMYKRAPD-----SKL----KKGAVYLWIHNK--DLQCKCPKIKL- 151 (198)
Q Consensus 95 ---------gi~~~V~~--~~~~g~~~~f~~kv~~v~K~~p~-----~ri----~rg~F~I~H~Ag--dV~Y~cp~L~~- 151 (198)
||+++|++ +-+.+++.+|+.++++.++.++. ++. ....|+|.|||| +|+|++.|+..
T Consensus 459 ~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleK 538 (767)
T cd01386 459 AGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRR 538 (767)
T ss_pred chhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHh
Confidence 77778877 34556789999999988875421 111 245799999999 59999999755
Q ss_pred Cccee
Q psy12860 152 NKPYL 156 (198)
Q Consensus 152 ~r~yL 156 (198)
|+|.+
T Consensus 539 NkD~~ 543 (767)
T cd01386 539 AKPNP 543 (767)
T ss_pred cCCCC
Confidence 67644
No 19
>KOG0160|consensus
Probab=99.93 E-value=4e-27 Score=224.82 Aligned_cols=159 Identities=19% Similarity=0.218 Sum_probs=126.8
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee---ccccccccc--cc
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS---TIVGKISEK--IN 105 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde---gi~~~V~~~--~~ 105 (198)
.|.|++|+||||||||+||+|||+|++|||++|| ++|..|||+|+.|+|.||++|+++++ |+.++++++ -+
T Consensus 378 FEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eq----eey~~e~i~Ws~ief~dNq~~~~lie~~~Gi~~Llde~c~lp 453 (862)
T KOG0160|consen 378 FESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQ----EEYTKEEIDWSGIEFRDNQECLDLIEKPLGILALLDEECMLP 453 (862)
T ss_pred ccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHH----HHHHhhccccccccCcCccchhhhhccccchhhccchhccCC
Confidence 4889999999999999999999999999999965 99999999999999999999999987 477777663 45
Q ss_pred chhHHHHHHHHHHhhccCC---CCCCCCCceEEEEecCccccCCCCc-ccCcceeeecc------cCCCC--C--C---C
Q psy12860 106 LKEWVRFTMNIQSMYKRAP---DSKLKKGAVYLWIHNKDLQCKCPKI-KLNKPYLILGK------EKEGN--Q--P---S 168 (198)
Q Consensus 106 ~g~~~~f~~kv~~v~K~~p---~~ri~rg~F~I~H~AgdV~Y~cp~L-~~~r~yLIlg~------~~~~~--~--~---~ 168 (198)
.+++.++..++...+..++ .++..+..|.|.||||||+|++.+| .+++||+.... ++... . + .
T Consensus 454 ~~t~~~~a~KL~~~~~~~~~f~kpr~~~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~ 533 (862)
T KOG0160|consen 454 KGTDETLAQKLYQTLKRNKRFTKPRLSRTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRA 533 (862)
T ss_pred CCCcchHHHHHHHHhccCCccCCCCCCcCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhc
Confidence 5566777777777776553 5778888999999999999999985 55899984332 11110 0 0 0
Q ss_pred --CcccCcceeEEechHHHHHHHHHHH
Q psy12860 169 --GLTMNAKSIVVEWKDELHDRMRQFQ 193 (198)
Q Consensus 169 --~l~~~~~Svv~~wk~sl~~lm~~l~ 193 (198)
.......|++.+|+.++..||..+.
T Consensus 534 ~~~~~~~~~tv~s~fk~~l~~Lm~~l~ 560 (862)
T KOG0160|consen 534 DSSAKSKRSTVGSQFKLQLISLMETLN 560 (862)
T ss_pred chhhhhhcccHHHHHHHHHHHHHHHhc
Confidence 0122346999999999999999875
No 20
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.92 E-value=1.1e-26 Score=221.08 Aligned_cols=161 Identities=21% Similarity=0.285 Sum_probs=118.7
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeee-ccCccccceee----ccccccccc--
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDF-GSGGWRFEFKS----TIVGKISEK-- 103 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f-~dN~~cidLde----gi~~~V~~~-- 103 (198)
.|+|..|+|||||||||||+||++|++++|..|+ ++|.+|||+|..|+| .||++|+||++ ||+++|++.
T Consensus 374 FE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~----~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~ 449 (689)
T PF00063_consen 374 FENFSVNSFEQLCINYANERLQQFFNQHIFKSEQ----EEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECL 449 (689)
T ss_dssp B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCT
T ss_pred cccccccccccceeeeccccccceeeeecccccc----cccccccccccccccccCchhhhhhhccccCCHHHHhhhhhh
Confidence 4899999999999999999999999999999855 999999999999999 99999999976 588888763
Q ss_pred ccchhHHHHHHHHHHhh-ccCC---CCC----CCCCceEEEEecCccccCCCCccc-Cccee------eecc-cCC----
Q psy12860 104 INLKEWVRFTMNIQSMY-KRAP---DSK----LKKGAVYLWIHNKDLQCKCPKIKL-NKPYL------ILGK-EKE---- 163 (198)
Q Consensus 104 ~~~g~~~~f~~kv~~v~-K~~p---~~r----i~rg~F~I~H~AgdV~Y~cp~L~~-~r~yL------Ilg~-~~~---- 163 (198)
-+.+++..|+.++...+ ..++ .++ .....|+|.||||+|.|++.++.. |+|.| +|.. .+.
T Consensus 450 ~~~~sd~~fl~kl~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~ 529 (689)
T PF00063_consen 450 LPRGSDESFLEKLLKRHSGKHPSFVKPRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSS 529 (689)
T ss_dssp STTS-HHHHHHHHHHHHTTTSTTEECTSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHH
T ss_pred cccchhhHHHHHHHhhcccCCCcccccccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCccccc
Confidence 34556789999999888 5543 232 346689999999999999999655 55554 1111 000
Q ss_pred -----------------------C--CCCCCcccCcceeEEechHHHHHHHHHHHHh
Q psy12860 164 -----------------------G--NQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 164 -----------------------~--~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
+ ...........|++.+|+.+|..||..|.+-
T Consensus 530 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t 586 (689)
T PF00063_consen 530 LFSSEATATSSSSSSLSRRSSSSSTQSRSSGSKKKKSTVSSQFRSSLDELMDTLRST 586 (689)
T ss_dssp HTHSHHH---S-S-S-BTTTTCCCTTSSCCCGGTCSSBHHHHHHHHHHHHHHHHCTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccHHHHHhhhhhc
Confidence 0 0011223345899999999999999999753
No 21
>KOG0161|consensus
Probab=99.91 E-value=3e-26 Score=232.16 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=121.6
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeec-cCccccceee---cccccccc--cc
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFG-SGGWRFEFKS---TIVGKISE--KI 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~-dN~~cidLde---gi~~~V~~--~~ 104 (198)
.|+|+.||||||||||+||+|||+||+|+|.+|| ++|.+|||.|++|+|+ |=+|||||++ ||+++|++ .-
T Consensus 458 FEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEq----eeY~~EgIew~fidfG~Dlq~~idLIEkp~Gi~slLdEEc~~ 533 (1930)
T KOG0161|consen 458 FEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQ----EEYQREGIEWDFIDFGLDLQPTIDLIEKPMGILSLLDEECVV 533 (1930)
T ss_pred ccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhH----HHHHHhCCceeeeccccchhhhHHHHhchhhHHHHHHHHHhc
Confidence 5899999999999999999999999999999965 9999999999999997 5599999987 67777776 34
Q ss_pred cchhHHHHHHHHHHhh-ccCCC---CC--CCCCceEEEEecCccccCCCC-cccCccee-------eecccCC-------
Q psy12860 105 NLKEWVRFTMNIQSMY-KRAPD---SK--LKKGAVYLWIHNKDLQCKCPK-IKLNKPYL-------ILGKEKE------- 163 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~-K~~p~---~r--i~rg~F~I~H~AgdV~Y~cp~-L~~~r~yL-------Ilg~~~~------- 163 (198)
+.+++.+|+.++...| +.+|. |+ -....|.|.||||+|.|++++ |..|++-| +..+.+.
T Consensus 534 PkAtd~tf~~kL~~~~~gk~~~f~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~ 613 (1930)
T KOG0161|consen 534 PKATDKTFLEKLCDQHLGKHPKFQKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQ 613 (1930)
T ss_pred CCCccchHHHHHHHHhhccCccccCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhh
Confidence 5555799999988888 44442 22 123479999999999999999 44566655 1112111
Q ss_pred ---C-C-----CC---CCcccCcceeEEechHHHHHHHHHHHH
Q psy12860 164 ---G-N-----QP---SGLTMNAKSIVVEWKDELHDRMRQFQR 194 (198)
Q Consensus 164 ---~-~-----~~---~~l~~~~~Svv~~wk~sl~~lm~~l~r 194 (198)
+ + +. .+-.....||+..++.+|..||..|.+
T Consensus 614 ~~~~~~~~~~~~~~~~~~K~g~F~Tvs~~~keql~~Lm~~l~~ 656 (1930)
T KOG0161|consen 614 DYAGAAAAAKGGEALKKTKKGSFRTVSQLYKEQLNKLMTTLRS 656 (1930)
T ss_pred hhhccchhhhhhhhhcccCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 0 0 00 011123368999999999999998864
No 22
>cd03578 NTR_netrin-4_like NTR domain, Netrin-4-like subfamily; composed of the C-terminal NTR domains of netrin-4 (beta netrin) and similar proteins. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. Netrin-4 is a basement membrane component that is important in neural, kidney and vascular development. It may also be involved in regulating the outgrowth and shape of epithelial cells during lung branching morphogenesis.
Probab=99.88 E-value=6.2e-24 Score=158.78 Aligned_cols=102 Identities=24% Similarity=0.411 Sum_probs=95.2
Q ss_pred ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEe-cCccccCCCCcccCcceeeecccCCCCCCCC
Q psy12860 91 EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIH-NKDLQCKCPKIKLNKPYLILGKEKEGNQPSG 169 (198)
Q Consensus 91 dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~-AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~ 169 (198)
|++||+++.|.+++..|+|+.|+++|.++||++ ..++++|+.++|+. ..++.|.||.|.+|++|||||.+++ .+++
T Consensus 8 dy~Yav~a~V~~~~~~g~~~~~~V~V~~V~K~~-~~~i~RG~~~L~v~~~~~~~C~CPkL~~g~~YLIlG~ed~--~~~r 84 (111)
T cd03578 8 KYAYVIKIKVLSAHDKGTHAEVNVKIKKVLKST-KLKLSRGKRTLYPESWTSRGCTCPILNPGLEYLVAGHEDV--RTGR 84 (111)
T ss_pred CCCEEEEEEEEEEEecCCeEEEEEEEEEEEecC-CCccccCceEEEeeccccccCcCCcccCCCEEEEEccCCC--CCCc
Confidence 456999999999999999999999999999998 77899999999999 6999999999999999999999666 5789
Q ss_pred cccCcceeEEechHHHHHHHHHHHHh
Q psy12860 170 LTMNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 170 l~~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
+++++.|+|++|+++|.++|++|-++
T Consensus 85 L~i~~~S~V~~Wrd~~~rr~~~~~~~ 110 (111)
T cd03578 85 LIVNMKSFVQHWKPSLGRKVMEILKR 110 (111)
T ss_pred EEECCccEEEEhhHHHHHHHHHHHcc
Confidence 99999999999999999999999876
No 23
>cd03579 NTR_netrin-1_like NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration during neural development. These proteins may be chemoattractive to some neurons and chemorepellant for others. In the case of netrin-1, attraction and repulsion responses are mediated by the DCC and UNC-5 receptor families. The biological activities of C. elegans UNC-6, which may either attract or repel migrating cells or axons, are mediated by its different domains. The C-terminal NTR domain of UNC-6 has been shown to inhibit axon branching activity.
Probab=99.78 E-value=3.4e-20 Score=140.25 Aligned_cols=108 Identities=40% Similarity=0.870 Sum_probs=96.2
Q ss_pred ccccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCC
Q psy12860 87 GWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQ 166 (198)
Q Consensus 87 ~~cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~ 166 (198)
..|-. |||+.+.|.+....++|..|+++|.++||.+ ...+++|+..+|..+.+..|.||.|.+|++|||||.+++.+.
T Consensus 3 ~~C~~-dyvik~~V~s~~~~~~~~~~~v~V~~V~K~g-~~~i~~~~~~l~v~~~~~~C~Cp~l~~g~~YLImG~~~~~~~ 80 (115)
T cd03579 3 KYCKK-DYAVQAQVLSRETAGEWAKFTVNVQTVYKRG-TSRLRRGDQPLWVPRKDLACKCPKLKVGKSYLLLGKDEDSPE 80 (115)
T ss_pred ccccc-CeEEEEEEEEEEecCCEEEEEEEEEEEEecC-CccccccceEEEEecCCCcCCCCCccCCCEEEEEeccCCCCC
Confidence 45665 9999999999877788999999999999988 446778888888888899999999999999999999776545
Q ss_pred CCCcccCcceeEEechHHHHHHHHHHHHhc
Q psy12860 167 PSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 167 ~~~l~~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
+++++++++|+|.+|++.|+++|++|+|+|
T Consensus 81 ~~~l~ld~~s~V~~W~~~w~rrl~~~~~~~ 110 (115)
T cd03579 81 RGGLILDKRSLVIEWRDEWARRLRRFQRRE 110 (115)
T ss_pred CCeEEECCCeEEEECCHHHHHHHHHHHhHH
Confidence 789999999999999999999999999987
No 24
>KOG4229|consensus
Probab=99.74 E-value=6.3e-19 Score=172.32 Aligned_cols=122 Identities=23% Similarity=0.273 Sum_probs=101.4
Q ss_pred cccccccchhhhcccccccccchhhhhhhhhhhhhhhhhhhhhcCceeeeeeeccCccccceee----ccccccccc--c
Q psy12860 31 IRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVDFGSGGWRFEFKS----TIVGKISEK--I 104 (198)
Q Consensus 31 ~e~F~~Ns~eqlcin~~ne~lq~~f~~~vf~~e~~~e~~~y~~Egi~w~~i~f~dN~~cidLde----gi~~~V~~~--~ 104 (198)
.|+|+.|+|||+|||||||.||.+|++|||.+|| +||..|||+|..|.|.||+.|+|++. +++.+|++. -
T Consensus 437 fE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq----~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~f 512 (1062)
T KOG4229|consen 437 FENFERNSFEQLCINLANEQLQYYFNQHIFALEQ----EEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRF 512 (1062)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcC
Confidence 3899999999999999999999999999999965 99999999999999999999999864 788888763 3
Q ss_pred cchhHHHHHHHHHHhhccCC---CCC-CCCCceEEEEecCccccCCCCc-ccCccee
Q psy12860 105 NLKEWVRFTMNIQSMYKRAP---DSK-LKKGAVYLWIHNKDLQCKCPKI-KLNKPYL 156 (198)
Q Consensus 105 ~~g~~~~f~~kv~~v~K~~p---~~r-i~rg~F~I~H~AgdV~Y~cp~L-~~~r~yL 156 (198)
+.+++.+++.+++..+..+. .++ ...+.|+|.||||-|.|+.-++ ..|+|++
T Consensus 513 P~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~ 569 (1062)
T KOG4229|consen 513 PKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTV 569 (1062)
T ss_pred CchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhh
Confidence 55666788888887777541 222 2355899999999999998875 4477765
No 25
>cd03581 NTR_Sfrp3_like NTR domain, Secreted frizzled-related protein (Sfrp) 3-like subfamily; composed of proteins similar to human Sfrp3 and Sfrp4. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp3 may suppress the growth and invasiveness of androgen-independent prostate cancer cells.
Probab=99.72 E-value=9.8e-19 Score=131.68 Aligned_cols=98 Identities=23% Similarity=0.474 Sum_probs=87.0
Q ss_pred eeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcc
Q psy12860 92 FKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLT 171 (198)
Q Consensus 92 Ldegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~ 171 (198)
+|||+.+.|.+.+..++|..|+++|.++|+.+ ...+.+++..+|.. .+|.||.+.+|++|||||.+++ ..++++
T Consensus 8 ~dYa~kv~V~~~~~~~~~~~y~v~V~~V~K~g-~~~i~~~~~~l~~~---~~C~cp~l~~gk~YLImG~~~~--~~~~~~ 81 (111)
T cd03581 8 YNYVIRAKVKEVKRGCHEVTAVVEVKEILKSS-LVNIPRDTVTLYTN---SGCLCPPLTPNEEYIIMGYEDE--ERSRLL 81 (111)
T ss_pred CCEEEEEEEEEEEecCCEEEEEEEEEEEEecC-CCccCCceEEEEEc---CCCCCccccCCCEEEEEecCCC--CcceEE
Confidence 57999999999888899999999999999988 44677777667755 5999999999999999999754 357899
Q ss_pred cCcceeEEechHHHHHHHHHHHHh
Q psy12860 172 MNAKSIVVEWKDELHDRMRQFQRR 195 (198)
Q Consensus 172 ~~~~Svv~~wk~sl~~lm~~l~r~ 195 (198)
++++|+|.+|++.|.++|++|+|+
T Consensus 82 ld~~S~Ve~W~~~~~rr~~~~~~~ 105 (111)
T cd03581 82 LVEGSLAEKWKDRLGKKVKRWDQK 105 (111)
T ss_pred eCCceEEEEhhHHHHHHHHHHHHH
Confidence 999999999999999999999997
No 26
>cd03576 NTR_PCOLCE NTR domain, PCOLCE subfamily; Procollagen C-endopeptidase enhancers (PCOLCEs) are extracellular matrix proteins that enhance the activity of procollagen C-proteases, by binding to the procollagen I C-peptide. They contain a C-terminal NTR domain, which have been suggested to possess inhibitory functions towards specific serine proteases but not towards metzincins, which are inhibited by the related TIMPs.
Probab=99.71 E-value=1.7e-18 Score=132.53 Aligned_cols=105 Identities=14% Similarity=0.271 Sum_probs=93.6
Q ss_pred cccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCC
Q psy12860 88 WRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQP 167 (198)
Q Consensus 88 ~cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~ 167 (198)
.|-. ||||.+.|.+++..++|+.|+++|.++||.+ ...++++++.+|+...++.|.||.|..|+.|||||..++. +
T Consensus 20 yC~s-dfaI~g~V~~~~~~~~~~~~tv~i~~vyK~g-~l~l~~~~~~l~V~~~~~~~~CP~lr~g~~YliMG~v~~~-g- 95 (124)
T cd03576 20 YCSS-EFVITGTVISMTRGPGSLHATVSIIKLYKEG-RLAITQAGKTMSVKITVVCKQCPLLRRGLNYILMGQVDEE-G- 95 (124)
T ss_pred cccC-CceEEEEEEEEEEcCCeEEEEEEeeeeeecC-CcccCcCCceEEEEecccccCCCCcccCCEEEEEeecCCC-C-
Confidence 4444 8999999999887778999999999999987 6778889889999999999999999999999999996543 2
Q ss_pred CCcccCcceeEEechHHHHHHHHHHHHhcC
Q psy12860 168 SGLTMNAKSIVVEWKDELHDRMRQFQRRGC 197 (198)
Q Consensus 168 ~~l~~~~~Svv~~wk~sl~~lm~~l~r~~~ 197 (198)
+-++++.|+|.+|++.|+++|++++++.|
T Consensus 96 -r~~i~p~SfV~~~k~~~~r~l~~~~~~~C 124 (124)
T cd03576 96 -RGVIPPESFVMLYKTKHQKLLAALSNKKC 124 (124)
T ss_pred -CcccCCccEEEEecchhHHHHHHhhcCCC
Confidence 23899999999999999999999999887
No 27
>KOG3512|consensus
Probab=99.70 E-value=1.2e-17 Score=149.68 Aligned_cols=102 Identities=30% Similarity=0.724 Sum_probs=92.6
Q ss_pred eecccccc-cccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcc
Q psy12860 93 KSTIVGKI-SEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLT 171 (198)
Q Consensus 93 degi~~~V-~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~ 171 (198)
||++...| ..++..+.|..|.++|.++|+++ ..+++||+..+|+.++++.|.||.|++++.|||||...+.+ .++|+
T Consensus 486 Dyav~~~v~~~~e~~~~~~k~~i~v~avfkrg-t~~~~rg~~~lwv~~~~i~c~cpkl~~~r~ylllg~~~~~~-~~gl~ 563 (592)
T KOG3512|consen 486 DYAVQLDVDASREATGLWCKYLINVAAVFKRG-TERARRGSSSLWVPAGDIACKCPKLKPGRRYLLLGGGPGAA-AGGLI 563 (592)
T ss_pred ccceeeEeeccccccCceeeeeehHHHHHhcc-chhhccCcceeeecCCCceecCCccccCceEEEecCCCCCC-CCcee
Confidence 77777766 45788888999999999999998 78899999999999999999999999999999999866543 44899
Q ss_pred cCcceeEEechHHHHHHHHHHHHhc
Q psy12860 172 MNAKSIVVEWKDELHDRMRQFQRRG 196 (198)
Q Consensus 172 ~~~~Svv~~wk~sl~~lm~~l~r~~ 196 (198)
+++.|||++|+|.|.++|++|||||
T Consensus 564 ~~~~s~v~~w~d~w~~r~~rfq~r~ 588 (592)
T KOG3512|consen 564 AAPSSVVLEWRDAWTRRLRRFQRRE 588 (592)
T ss_pred EcCccEEEEchHHHHHHHHHHHHhh
Confidence 9999999999999999999999998
No 28
>smart00643 C345C Netrin C-terminal Domain.
Probab=99.45 E-value=5.6e-15 Score=111.00 Aligned_cols=106 Identities=24% Similarity=0.369 Sum_probs=86.2
Q ss_pred ccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCC-cccCcceeeecccCCC-
Q psy12860 88 WRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPK-IKLNKPYLILGKEKEG- 164 (198)
Q Consensus 88 ~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~-L~~~r~yLIlg~~~~~- 164 (198)
.|. |+|||+.+.|.+....+++..|+++|.++||.+ ...+.++.-.+|.+.++..|.||. +.+|++|||||.....
T Consensus 4 ~C~~~~dyv~k~~V~s~~~~~~~~~~~~~v~~v~K~g-~~~~~~~~~~~~~~~~~~~C~cp~~l~~g~~YLImG~~~~~~ 82 (114)
T smart00643 4 ACKSDVDYVYKVKVLSVEEEGGFDKYTVKILEVIKSG-TDELVRGKGKLRLFISRASCRCPLLLKKGKSYLIMGKSGDLW 82 (114)
T ss_pred cccCCCCEEEEEEEEEEEecCCeEEEEEEEEEEEEec-CccccccCCcEEEEeeccccCCccccCCCCEEEEecCCCCcc
Confidence 455 457999999998776677889999999999987 444555445688898888999998 5699999999975431
Q ss_pred --CCCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860 165 --NQPSGLTMNAKSIVVEWKDELHDRMRQFQR 194 (198)
Q Consensus 165 --~~~~~l~~~~~Svv~~wk~sl~~lm~~l~r 194 (198)
.+.++++++++|+|.+|++.+.+.+++|++
T Consensus 83 ~~~~~~~~~l~~~s~v~~W~~~~~~~~~~~~~ 114 (114)
T smart00643 83 DVKGRGQYVLGKNSWVEEWPTEEECRLRRLQK 114 (114)
T ss_pred ccCCccEEEeCCCeEEEECCChhhcchhhcCC
Confidence 124689999999999999999999998864
No 29
>PF01759 NTR: UNC-6/NTR/C345C module; InterPro: IPR018933 The netrin (NTR) module is an about 130-residue domain found in the C-terminal parts of netrins, complement proteins C3, C4, and C5, secreted frizzled-related proteins, and type I procollagen C-proteinase enhancer proteins (PCOLCEs), as well as in the N-terminal parts of tissue inhibitors of metalloproteinases (TIMPs). The proteins harboring the NTR domain fulfill diverse biological roles ranging from axon guidance, regulation of Wnt signalling, to the control of the activity of metalloproteinases. The NTR domain can be found associated to other domains such as CUB, WAP, Kazal, Kunitz, Ig-like, laminin N-terminal, laminin-type EGF or frizzled. The NTR domain is implicated in inhibition of zinc metalloproteinases of the metzincin family [, ]. The NTR module is a basic domain containing six conserved cysteines, which are likely to form internal disulphide bonds, and several conserved blocks of hydrophobic residues (including an YLLLG-like motif). The NTR module consists of a beta-barrel with two terminal alpha-helices packed side by side against the face of the beta-barrel (see P16035 from SWISSPROT) []. This entry includes most netrin modules, but excludes those found in TIMPs.; PDB: 2B39_B 3HS0_C 3PRX_B 3PVM_D 3HRZ_C 3FRP_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D ....
Probab=99.39 E-value=2.4e-15 Score=112.26 Aligned_cols=105 Identities=25% Similarity=0.596 Sum_probs=85.3
Q ss_pred ccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCccc-CcceeeecccCC--CC
Q psy12860 89 RFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKL-NKPYLILGKEKE--GN 165 (198)
Q Consensus 89 cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~-~r~yLIlg~~~~--~~ 165 (198)
|-. |||+.+.|.+....+++..|++.|..+||.+...++.++...+|...++..|.||.|.+ |.+|||||.... +.
T Consensus 4 C~~-dyv~k~~V~~~~~~~~~~~~~v~v~~v~K~g~~~~~~~~~~~~~~~~~~~~C~Cp~l~~~g~~YLImG~~~~~~~~ 82 (111)
T PF01759_consen 4 CRS-DYVIKVRVLSVEEEGGFTRYTVRVKEVYKQGNDDRIRRGRRRLFVKRNDCRCPCPDLKVIGKEYLIMGKDGDTDGK 82 (111)
T ss_dssp SST-CEEEEEEEEEEEEESTEEEEEEEEEEEEEETTSSSTTSTSEEEEEEEGS-S-GGHHHHTTTCEEEEEEEGGGECST
T ss_pred chh-CEEEEEEEEEEEecCCeEEEEEEEEEEEEcCCcccccCCceEEEEEcccccccCcccccCCCEEEEEEeecccCCC
Confidence 445 89999999998777788999999999999884346677887788888889999999999 999999997532 33
Q ss_pred CCCCcccCcceeEEechHHHHHHHHHHHH
Q psy12860 166 QPSGLTMNAKSIVVEWKDELHDRMRQFQR 194 (198)
Q Consensus 166 ~~~~l~~~~~Svv~~wk~sl~~lm~~l~r 194 (198)
..+++++++.|+|.+|++.+.+.+++|+|
T Consensus 83 ~~~~~~l~~~s~v~~W~~~~~~~~~~~~~ 111 (111)
T PF01759_consen 83 DRGRYVLDSDSFVEPWPPKWNRRLRRLRR 111 (111)
T ss_dssp TSEEEE-STTSEEEEE-CTGGGGSTCTHH
T ss_pred CccEEEECCCcEEEECCchhhhhhHHhcC
Confidence 46689999999999999999999988875
No 30
>cd03523 NTR_like NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the domain plays a role in controlling axon branching in neural development, while the common function of these modules in TIMPs appears to be binding to metzincins. A subset of this family is also known as the C345C domain because it occurs as a C-terminal domain in complement C3, C4 and C5. In C5, the domain interacts with various partners during the formation of the membrane attack complex.
Probab=99.05 E-value=2.8e-11 Score=89.49 Aligned_cols=94 Identities=23% Similarity=0.416 Sum_probs=70.5
Q ss_pred eecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCccc
Q psy12860 93 KSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTM 172 (198)
Q Consensus 93 degi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~~ 172 (198)
|||+.+.|.+....+++..|+++|..+||.+ ...+..++...+...+...|.||.|.+|++|||||...+. ++++.+
T Consensus 7 dyvi~~~V~~~~~~~~~~~~~v~v~~v~K~g-~~~~~~~~~~~~~~~~~~~~c~~~l~~g~~YLImG~~~~~--~~~~~l 83 (105)
T cd03523 7 DYVVRAKIKEIKEENDDVKYEVKIIKIYKTG-KAKADKADLRFYYTAPACCPCHPILNPGREYLIMGKEEDS--QGGLVL 83 (105)
T ss_pred cEEEEEEEEEEEecCCcEEEEEEEEEEecCC-CcccccccEEEEEeCCcccccCcccCCCceEEEEEeeecc--cCcEEE
Confidence 7999999988766667888999999999987 3333344434444445444446999999999999986542 468999
Q ss_pred CcceeEEechH---HHHHHH
Q psy12860 173 NAKSIVVEWKD---ELHDRM 189 (198)
Q Consensus 173 ~~~Svv~~wk~---sl~~lm 189 (198)
++.|+|.+|++ .|.++|
T Consensus 84 ~~~s~v~~W~~~~~~~~~~l 103 (105)
T cd03523 84 DPLSFVEPWSPLSLRQDRRL 103 (105)
T ss_pred cCccEEEECCcccHHHHHhh
Confidence 99999999999 455444
No 31
>cd03582 NTR_complement_C5 NTR/C345C domain, complement C5 subfamily; The NTR domain found in complement C5 is also known as C345C because it occurs at the C-terminus of complement C3, C4 and C5. Complement C5 is activated by C5 convertase, which itself is a complex between C3b and C3 convertase. The small cleavage fragment, C5a, is the most important small peptide mediator of inflammation, and the larger active fragment, C5b, initiates late events of complement activation. The NTR/C345C domain is important in the function of C5 as it interacts with enzymes that convert C5 to the active form, C5b. The domain has also been found to bind to complement components C6 and C7, and may specifically interact with their factor I modules.
Probab=99.01 E-value=5.9e-11 Score=93.82 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=77.7
Q ss_pred cccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCC
Q psy12860 87 GWRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGN 165 (198)
Q Consensus 87 ~~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~ 165 (198)
..|. .+|||+.+.|.+....++|..|+++|.+|+|.+ ...+.+|+ .+.|..+..|.||.|.+|+.|||||.+..-.
T Consensus 25 ~AC~~~vDYaykv~V~~~~~~~~~~~y~~~I~~V~K~g-~d~~~~g~--~r~f~~~~~Cr~~~l~~gk~YLImG~~~~~~ 101 (150)
T cd03582 25 ETCKEQIAYAYKVMIKSSAAEGDFVTYKATVLDVLKNG-QAELEKDS--EVTLVKKATCTSVELQEGQQYLIMGKEALKI 101 (150)
T ss_pred hccCCCCCEEEEEEEEEEEecCCeEEEEEEEEEeEecC-CccccCCC--eEEEeecCCCCCCcccCCCEEEEeeCCCCcc
Confidence 4555 468999999999888888999999999999998 44677776 4456888999999999999999999864411
Q ss_pred -----CCCCcccCcceeEEechHH
Q psy12860 166 -----QPSGLTMNAKSIVVEWKDE 184 (198)
Q Consensus 166 -----~~~~l~~~~~Svv~~wk~s 184 (198)
...+++++.+|++..|...
T Consensus 102 ~~~~~~~~~Y~L~~~TWvE~WP~~ 125 (150)
T cd03582 102 RLNRSFRYRYPLDSEAWIEWWPTD 125 (150)
T ss_pred ccCCCceeEEEcCCceeEEECCCh
Confidence 1246899999999999874
No 32
>cd03574 NTR_complement_C345C NTR/C345C domain; The NTR domains that are found in the C-termini of complement C3, C4 and C5, are also called C345C domains. In C5, the domain interacts with various partners during the formation of the membrane attack complex, a fundamental process in the mammalian defense against infection. It's role in component C3 and C4 is not well understood.
Probab=98.96 E-value=1.3e-10 Score=91.32 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=72.5
Q ss_pred ccccceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCC-ceEEEEecCccccCC-CCcccCcceeeecccCCC
Q psy12860 87 GWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKG-AVYLWIHNKDLQCKC-PKIKLNKPYLILGKEKEG 164 (198)
Q Consensus 87 ~~cidLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg-~F~I~H~AgdV~Y~c-p~L~~~r~yLIlg~~~~~ 164 (198)
..|-.+|||+.+.|.+....++|..|+++|.+|+|.+ ...+.++ . +.++.....|.| +.|.+|++|||||.+...
T Consensus 18 kaC~~~DYa~kv~V~~~~~~~~~~~~~~~v~~V~K~g-~~~~~~~~~--~~~~~~~~~C~c~~~l~~g~~YLImG~~~~~ 94 (147)
T cd03574 18 KACTSVDYVYKVKVTSVEEEAGFRIYKARVTEVIKSG-SDDVQNGNA--RRTFIIRESCDCPLRLKEGRHYLIMGSDGAF 94 (147)
T ss_pred ccccccceEEEEEEEEEEecCCeEEEEEEEEEEEecc-cccccCCCc--eEEEEccCCccchhcCCCCCEEEEeccCcCc
Confidence 4555468999999999888888999999999999988 3344444 3 233333349999 888999999999985442
Q ss_pred C------CCCCcccCcceeEEechHH
Q psy12860 165 N------QPSGLTMNAKSIVVEWKDE 184 (198)
Q Consensus 165 ~------~~~~l~~~~~Svv~~wk~s 184 (198)
. .+.+++++.+|+|.+|++.
T Consensus 95 ~~~~~~~~~~~yvl~~~t~Ve~Wp~~ 120 (147)
T cd03574 95 YDDRNGEDRYQYVLDSNTWVEEWPTD 120 (147)
T ss_pred ccccCCCcceEEEeCCCcEEEECCCh
Confidence 1 2347999999999999874
No 33
>cd03584 NTR_complement_C4 NTR/C345C domain, complement C4 subfamily; The NTR domain found in complement C4 is also known as the C345C domain because it occurs at the C-terminus of complement C3, C4 and C5. Complement C4 is a key player in the activation of the component classical pathway. C4 is cleaved by activated C1 to yield C4a anaphylatoxin, and the larger fragment C4b, an essential component of the C3- and C5-convertase enzymes. C4b binds covalently to the surface of pathogens through a reactive thioester. The role of the NTR/C345C domain in C4 (C4b) is unclear.
Probab=98.87 E-value=3.2e-10 Score=89.95 Aligned_cols=97 Identities=20% Similarity=0.257 Sum_probs=78.0
Q ss_pred cccc--ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCC
Q psy12860 87 GWRF--EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG 164 (198)
Q Consensus 87 ~~ci--dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~ 164 (198)
..|. ..|||+.+.|++....++|..|+++|.+|+|.+....+++|. .++|..+..|.| .|.+|+.|||||.+...
T Consensus 27 ~AC~~~~~DYaykv~V~~~~~~~~~~~y~~~I~~ViK~g~d~~~~~g~--~r~f~~~~~Cr~-~l~~gk~YLImG~~~~~ 103 (153)
T cd03584 27 FACYSPRVDYAYVVKVLNISEKSNFELYETSITDVLQTTGDVSVKPEE--TRVFLKRLSCKL-ELKKGKEYLIMGKDGAT 103 (153)
T ss_pred HhhCCCCCCEEEEEEEEEEEecCCEEEEEEEEEEEEEcCCcCcccCCC--eEEEEecCCccC-cccCCCEEEEEcCCCCC
Confidence 4565 578999999999888888999999999999998333666776 455688899999 88899999999986542
Q ss_pred C---CCCCcccCcceeEEechHHHH
Q psy12860 165 N---QPSGLTMNAKSIVVEWKDELH 186 (198)
Q Consensus 165 ~---~~~~l~~~~~Svv~~wk~sl~ 186 (198)
. +..+++++.+|+|..|...-.
T Consensus 104 ~~~~~~~~Y~L~~~tWvE~wP~~~~ 128 (153)
T cd03584 104 SDSNGHMQYLLDSKTWVEKIPSEKR 128 (153)
T ss_pred cCcCCcEEEEeCCCceEEECCChHH
Confidence 1 234789999999999987433
No 34
>cd03577 NTR_TIMP_like NTR domain, TIMP-like subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling. They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by non-covalently binding their active zinc-binding sites. This group contains domains similar to the TIMP NTR domain, which binds MMPs. Members of this group may or may not function as MMP inhibitors.
Probab=98.30 E-value=6.2e-08 Score=72.85 Aligned_cols=84 Identities=25% Similarity=0.367 Sum_probs=67.7
Q ss_pred eeecccccccccccch--hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCC
Q psy12860 92 FKSTIVGKISEKINLK--EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSG 169 (198)
Q Consensus 92 Ldegi~~~V~~~~~~g--~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~ 169 (198)
-|+|+.+.|.+....+ ++.+|++++.++||.++ ..++...|+..+.+..|.||.+. |++|||+|+... ++
T Consensus 15 sD~Vi~~kV~~~~~~~~~~~~~~~~~v~~v~K~~~---~~~~~~~v~t~~~~~~Cg~~~~~-~~~YLI~G~~~~----~~ 86 (116)
T cd03577 15 ADFVIKVKVLKKKLDGAGLNIRYTIEIKKVYKGSE---KSLLPITIYTPSDDSACGIPLLE-GKEYLIAGKVED----GA 86 (116)
T ss_pred CCEEEEEEEeceeeecCCCeEEEEEEEEEEecCCc---cCCCceEEEecCcccCcCcCcCC-CCEEEEEEEcCC----Cc
Confidence 3789999998764433 57788889999999762 34556778888888899999988 999999998543 58
Q ss_pred cccCcceeEEechH
Q psy12860 170 LTMNAKSIVVEWKD 183 (198)
Q Consensus 170 l~~~~~Svv~~wk~ 183 (198)
+.++.-|.+.+|++
T Consensus 87 l~~~~Cs~v~~W~~ 100 (116)
T cd03577 87 LHTTLCDGVAPWDD 100 (116)
T ss_pred EEEEeCCCEEEhHH
Confidence 89999999999987
No 35
>cd03580 NTR_Sfrp1_like NTR domain, Secreted frizzled-related protein (Sfrp) 1-like subfamily; composed of proteins similar to human Sfrp1, Sfrp2 and Sfrp5. Sfrps are soluble proteins containing an NTR domain C-terminal to a cysteine-rich Frizzled domain. They show diverse functions and are thought to work in Wnt signaling indirectly, as modulators or antagonists by binding Wnt ligands, and directly, via the Wnt receptor, Frizzled. They participate in regulating the patterning along the anteroposterior axis in vertebrates. Human Sfrp1 has been found frequently to be downregulated in breast cancer and is associated with disease progression and poor prognosis.
Probab=98.26 E-value=3e-07 Score=70.64 Aligned_cols=95 Identities=25% Similarity=0.575 Sum_probs=70.4
Q ss_pred eecccccccccccchhHHHHHHHH-HHhhccCCC--CCCCCCceEEEEecCccccCCCCcc-cCcceeeecccCCCCCCC
Q psy12860 93 KSTIVGKISEKINLKEWVRFTMNI-QSMYKRAPD--SKLKKGAVYLWIHNKDLQCKCPKIK-LNKPYLILGKEKEGNQPS 168 (198)
Q Consensus 93 degi~~~V~~~~~~g~~~~f~~kv-~~v~K~~p~--~ri~rg~F~I~H~AgdV~Y~cp~L~-~~r~yLIlg~~~~~~~~~ 168 (198)
|||+.+.|.+....++|..|+... ..+||.++- ..+++ ..+|... ++.|.||.+. .+..|||||...+ +
T Consensus 25 DFvik~kV~~~~~~~g~~~~~~~~~~~v~K~g~l~~~~~~~--~~l~l~~-~~~C~C~~l~~~~~~YLImG~~~~----g 97 (126)
T cd03580 25 DFALKVKIKEISYENGDRKVIGEKKKEILKQGPLKKKDLKK--LVLWLKN-GANCPCPQLDNLNGVYLVMGRKVD----G 97 (126)
T ss_pred cEEEEEEEEEEeecCCcEEEEEeeeEEEEecCCccccCcce--EEEEecC-CCCCCCccccCCCceEEEEEEEeC----C
Confidence 899999998875555667777655 788998731 12333 4566665 8899999997 8999999997633 3
Q ss_pred CcccCcceeEEech---HHHHHHHHHHHHhcC
Q psy12860 169 GLTMNAKSIVVEWK---DELHDRMRQFQRRGC 197 (198)
Q Consensus 169 ~l~~~~~Svv~~wk---~sl~~lm~~l~r~~~ 197 (198)
.+++ |.+.+|. ..+.+-|+.+..-.|
T Consensus 98 ~~~v---~~i~~W~k~~~~~k~a~r~~k~~~C 126 (126)
T cd03580 98 KLLL---TSIYKWQKKNKEFKRAVRKWKKHKC 126 (126)
T ss_pred EEEE---EEEeehhcCCHHHHHHHHHhhcCCC
Confidence 5666 9999995 348888888876555
No 36
>cd03583 NTR_complement_C3 NTR/C345C domain, complement C3 subfamily; The NTR domain found in complement C3 is also known as the C345C domain because it occurs at the C-terminus of complement C3, C4 and C5. Complement C3 plays a pivotal role in the activation of the complement systems, as all pathways (classical, alternative, and lectin) result in the processing of C3 by C3 convertase. The larger fragment, activated C3b, contains the NTR/C345C domain and binds covalently, via a reactive thioester, to cell surface carbohydrates including components of bacterial cell walls and immune aggregates. The smaller cleavage product, C3a, acts independently as a diffusible signal to mediate local inflammatory processes. The structure of C3 shows that the NTR/C345C domain is located in an exposed position relative to the rest of the molecule. The function of the domain in complement C3 is poorly understood.
Probab=98.24 E-value=2.1e-07 Score=73.55 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=73.1
Q ss_pred Ccccc-ceeecccccccccccchhHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCC-cccCcceeeecccCC
Q psy12860 86 GGWRF-EFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPK-IKLNKPYLILGKEKE 163 (198)
Q Consensus 86 N~~ci-dLdegi~~~V~~~~~~g~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~-L~~~r~yLIlg~~~~ 163 (198)
+..|. .+|||..+.|++....+++..|++.|.+|+|.+....+ .|. +++|.....|+++- |.+|+.|||||.+..
T Consensus 22 ~~AC~~~vdYvykv~v~~~~~~~~f~~Y~~~I~~ViK~G~D~~~-~~~--~r~F~~r~sCr~~l~l~~gk~YLIMG~~~~ 98 (149)
T cd03583 22 DKACEPGVDYVYKVKLVNVELSDSYDIYTMEILQVIKEGTDEGP-EGK--TRTFISHPKCREALNLKEGKDYLIMGLSSD 98 (149)
T ss_pred HhhCCCCCcEEEEEEEEEEeccCCeEEEEEEEEEEEecccccCc-CCC--eEEEEecCCCcchhccCCCCEEEEEeCCCC
Confidence 34565 46899999998877777788899999999998732233 443 66677778899985 459999999998755
Q ss_pred C---CCCCCcccCcceeEEechHHH
Q psy12860 164 G---NQPSGLTMNAKSIVVEWKDEL 185 (198)
Q Consensus 164 ~---~~~~~l~~~~~Svv~~wk~sl 185 (198)
- .+..+++++.+|+|..|...-
T Consensus 99 ~~~~~~~~~YvL~~~TWvE~wP~~~ 123 (149)
T cd03583 99 LWRIKDKYSYVIGKDTWIEYWPTED 123 (149)
T ss_pred ccccCCcEEEEeCCCeEEEECCChh
Confidence 1 123478999999999998743
No 37
>cd03575 NTR_WFIKKN NTR domain, WFIKKN subfamily; WFIKKN proteins contain a C-terminal NTR domain and are putative secreted proteins which may be multivalent protease inhibitors that act on serine proteases as well as metalloproteases. Human WFIKKN and a related protein sharing the same domain architecture were observed to have distinct tissue expression patterns. WFIKKN is also referred to as growth and differentiation factor-associated serum protein-1 (GASP-1). It inhibits the activity of mature myostatin, a specific regulator of skeletal muscle mass and a member of the TGFbeta superfamily.
Probab=96.77 E-value=0.00068 Score=50.71 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=52.4
Q ss_pred eeccccccccc-c-cchhHHHHHHHHHHhhccCCCCCCC-CC--ceEEEEecCccccCCCCcccCc-ceeeecccCCCCC
Q psy12860 93 KSTIVGKISEK-I-NLKEWVRFTMNIQSMYKRAPDSKLK-KG--AVYLWIHNKDLQCKCPKIKLNK-PYLILGKEKEGNQ 166 (198)
Q Consensus 93 degi~~~V~~~-~-~~g~~~~f~~kv~~v~K~~p~~ri~-rg--~F~I~H~AgdV~Y~cp~L~~~r-~yLIlg~~~~~~~ 166 (198)
|++|.+.|.+. + .++.++ ++.+..+||.. .--++ .| ...+.-.--++.|.||.|..+. .|||||..++
T Consensus 8 dFVI~gkVtel~~~~~sg~a--~Vsl~k~~K~~-klgl~~~g~~~le~~l~k~~~~CpCP~l~~g~~~yiIMG~v~d--- 81 (109)
T cd03575 8 DFAIVGRLTELTEELDSGHA--RVTLEEVLKDE-KMGLKFFGTEPLEVTLLNMDWSCPCPNITAGEGPLIIMGDVHD--- 81 (109)
T ss_pred ceEEEEEEEEEEecCCCceE--EEEEeeeeccc-ccCccccCcccceEEeeccCccCCCCccccccccEEEEEEecC---
Confidence 67888888763 2 223333 34556667753 11111 22 1112222346689999999987 9999997553
Q ss_pred CCCcccCcceeEEechHHH
Q psy12860 167 PSGLTMNAKSIVVEWKDEL 185 (198)
Q Consensus 167 ~~~l~~~~~Svv~~wk~sl 185 (198)
++.++.|.|+|..=.+.=
T Consensus 82 -G~~~l~p~sfv~~~~~~r 99 (109)
T cd03575 82 -GMAVLQPDSYVRASSERR 99 (109)
T ss_pred -CeEeeCchheeeeccHHH
Confidence 356788899998755443
No 38
>PF00965 TIMP: Tissue inhibitor of metalloproteinase; InterPro: IPR001820 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Tissue inhibitors of metalloproteinases (TIMPs, [, , ]) and their target matrix metalloproteinases (MMPs, MEROPS peptidase family M10A) are important in connective tissue re-modelling in diseases of the cardiovascular system and in the physiological degradation of connective tissue, as well as in pathological states such as tumour invasion and arthritis. TIMPs belong to MEROPS proteinase inhibitor family I35, clan IT. TIMPs complex with extracellular matrix metalloproteinases (such as collagenases) and irreversibly inactivate them. Members of this family are common in extracellular regions of vertebrate species []. TIMPs are proteins of about 200 amino acid residues, 12 of which are cysteines involved in disulphide bonds []. The basic structure of such a type of inhibitor is shown in the following schematic representation: +-----------------------------+ +--------------+ | | | | CxCxCxxxxxxxxxxxxxxxxxCxxxxxxxxxCxxxxxxxCxCxCxCxCxxxxxCxxCxxx | | | | | | | | | +-----------------|-----------------+ +-+ +-----+ +---------------------+ 'C': conserved cysteine involved in a disulphide bond. The crystal structure of the human proMMP-2/TIMP-2 complex reveals an interaction between the hemopexin domain of proMMP-2 and the C-terminal domain of TIMP-2, leaving the catalytic site of MMP-2 and the inhibitory site of TIMP-2 distant and spatially isolated. The interfacial contact of these two proteins is characterised by two distinct binding regions composed of alternating hydrophobic and hydrophilic interactions. This unique structure provides information for how specificity for non-inhibitory MMP/TIMP complex formation is achieved []. ; GO: 0008191 metalloendopeptidase inhibitor activity; PDB: 2E2D_C 1BUV_T 1BQQ_T 1BR9_A 1GXD_D 2TMP_A 2J0T_F 1D2B_A 3MA2_C 1UEA_B ....
Probab=91.85 E-value=0.016 Score=46.99 Aligned_cols=79 Identities=22% Similarity=0.444 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCcccCcceeeecccCCCCCCCCcccCcceeEEechHHHHHH
Q psy12860 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDR 188 (198)
Q Consensus 109 ~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~~r~yLIlg~~~~~~~~~~l~~~~~Svv~~wk~sl~~l 188 (198)
..+|.+++.++||..+..........|.-.+.+-.|... |.+|..|||.|+... .+.+.++-=+++.+|.+
T Consensus 43 ~~~Y~vkv~kvfKg~~~~~~~~~~~~i~T~~~~s~CGv~-l~~g~~YLIaG~~~~---~g~l~i~~C~~v~~w~~----- 113 (181)
T PF00965_consen 43 NIRYEVKVTKVFKGPSKLGKMTDIQFIYTPSSSSLCGVK-LELGKEYLIAGRVVS---DGKLHISLCSFVEPWDS----- 113 (181)
T ss_dssp EEEEEEEEEEEEESCSSSSTTTS-SEEEEESSGGGTS-----SSSEEEEEEEEES---TTEEE--TTSCEEEGGG-----
T ss_pred cEEEEEEEEEEEcCCcccccccccceeccCCcccccCcc-cCCCceEEEEEEecC---CCcEEEEECCcEeehhh-----
Confidence 457777888889875221111122235544556678887 999999999996432 23566677789999976
Q ss_pred HHHHHHhc
Q psy12860 189 MRQFQRRG 196 (198)
Q Consensus 189 m~~l~r~~ 196 (198)
|..-||++
T Consensus 114 lt~~Qr~g 121 (181)
T PF00965_consen 114 LTPSQRRG 121 (181)
T ss_dssp S-HHHHHC
T ss_pred CCHHHHhh
Confidence 44444443
No 39
>cd03585 NTR_TIMP NTR domain, TIMP subfamily; TIMPs, or tissue inibitors of metalloproteases, are essential regulators of extracellular matrix turnover and remodeling. They form complexes with matrix metalloproteases (MMPs) and inactivate them irreversibly by non-covalently binding their active zinc-binding sites. The levels of activated membrane-type MMPs, MMPs, and free TIMPs determine the balance between matrix degradation and matrix formation or stabilization. Consequently, TIMPs play roles in processes that require the remodeling and degradation of connective tissue, such as development, morphogenesis, wound healing, as well as in various diseases and pathological states such as tumor cell metastasis, arthritis, and artherosclerosis. Most TIMPs bind to a variety of MMPs. TIMP-1 and TIMP-2 appear to be multifunctional proteins with diverse biological action. They may exhibit growth factor-like activity and can inhibit angiogenesis. TIMP-3 has been implicated in apoptosis.
Probab=48.06 E-value=3.6 Score=33.62 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=46.3
Q ss_pred eecccccccccc--cch-------hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCccc--Ccceeeeccc
Q psy12860 93 KSTIVGKISEKI--NLK-------EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKL--NKPYLILGKE 161 (198)
Q Consensus 93 degi~~~V~~~~--~~g-------~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~--~r~yLIlg~~ 161 (198)
|+||++.|.+.. ..+ ...+|.+++.++||.. +.+..- -.|+-.+-+-.|... |.. +.+|||.|+.
T Consensus 16 D~VIrakvvg~~~~~~~nd~~~~~~~~~Y~Ik~~K~fKg~--~~~~di-~~iyTp~~~s~CGv~-l~~~~~~eYLIaG~~ 91 (183)
T cd03585 16 DIVIRAKIVGEKEVDSGNDYGNPIKRIQYEIKQIKMFKGF--DKDKDI-QYIYTPASSSLCGVK-LDVNGKKEYLISGKV 91 (183)
T ss_pred cEEEEEEEeccceeccCcccCCCccceEEEEEEEEEEeCC--CccCcc-eEEecCCCccccceE-EEcCCCEEEEEEEEc
Confidence 778888886531 111 1235566666677743 222111 123333334444443 444 5999999986
Q ss_pred CCCCCCCCcccCcceeEEech
Q psy12860 162 KEGNQPSGLTMNAKSIVVEWK 182 (198)
Q Consensus 162 ~~~~~~~~l~~~~~Svv~~wk 182 (198)
.. +.+.++-=+++.+|.
T Consensus 92 ~~----g~l~i~~C~fv~pW~ 108 (183)
T cd03585 92 EG----GKVHITLCDFVEPWD 108 (183)
T ss_pred cC----CcEEEEecCCEeehH
Confidence 43 356777778899984
No 40
>KOG3794|consensus
Probab=46.98 E-value=12 Score=34.19 Aligned_cols=8 Identities=63% Similarity=0.505 Sum_probs=3.3
Q ss_pred CchhHHHH
Q psy12860 3 KPKSLKKK 10 (198)
Q Consensus 3 ~~~~~~~~ 10 (198)
|-+.++|.
T Consensus 225 KeKl~kKl 232 (453)
T KOG3794|consen 225 KEKLLKKL 232 (453)
T ss_pred HHHHHHHH
Confidence 33444443
No 41
>smart00206 NTR Tissue inhibitor of metalloproteinase family. Form complexes with metalloproteinases, such as collagenases, and irreversibly inactivate them.
Probab=46.19 E-value=3.6 Score=33.34 Aligned_cols=84 Identities=21% Similarity=0.379 Sum_probs=48.3
Q ss_pred ceeecccccccccc--cch--hHHHHHHHHHHhhccCCCCCCCCCceEEEEecCccccCCCCccc--CcceeeecccCCC
Q psy12860 91 EFKSTIVGKISEKI--NLK--EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKL--NKPYLILGKEKEG 164 (198)
Q Consensus 91 dLdegi~~~V~~~~--~~g--~~~~f~~kv~~v~K~~p~~ri~rg~F~I~H~AgdV~Y~cp~L~~--~r~yLIlg~~~~~ 164 (198)
+-|+||++.|.+.. ..+ ...+|.+++.++||.. +.+..- -.|+-.+-+-.|... |.. +.+|||.|+...
T Consensus 14 ~aD~VIrakvv~~~~~~~~~~~~~~Y~Ik~~K~fKg~--~~~~di-~~iyTp~~~s~CGv~-l~~~~~~~YLIaG~~~d- 88 (172)
T smart00206 14 NSDLVIRAKFVGKKEVNEGNTLYQRYEIKQTKMFKGF--DKLGDI-RFIYTPASESLCGYK-LESQNKEEYLIAGRLED- 88 (172)
T ss_pred cCcEEEEEEEeccccccCCCcceEEEEEEEEEEEeCC--cccCCc-ceEecCCCccccceE-EEeCCCEEEEEEEEccC-
Confidence 34778888886532 112 2346666666677743 222111 124444444445543 444 499999998642
Q ss_pred CCCCCcccCcceeEEech
Q psy12860 165 NQPSGLTMNAKSIVVEWK 182 (198)
Q Consensus 165 ~~~~~l~~~~~Svv~~wk 182 (198)
+.+.++-=+++.+|.
T Consensus 89 ---G~l~i~lC~fv~pW~ 103 (172)
T smart00206 89 ---GKMHITLCSFVVPWD 103 (172)
T ss_pred ---CeEEEEecCcEeehH
Confidence 356677778888884
No 42
>PF09322 DUF1979: Domain of unknown function (DUF1979); InterPro: IPR015401 This N-terminal domain is functionally uncharacterised and found in various Oryza sativa (Rice) mutator-like transposases.
Probab=26.04 E-value=49 Score=21.68 Aligned_cols=21 Identities=5% Similarity=0.145 Sum_probs=18.3
Q ss_pred ceEEEEecCccccCCCCcccC
Q psy12860 132 AVYLWIHNKDLQCKCPKIKLN 152 (198)
Q Consensus 132 ~F~I~H~AgdV~Y~cp~L~~~ 152 (198)
-|.|||-+|.|.|.-+|+..+
T Consensus 6 ~F~~~hg~GNvR~Gp~GvdLs 26 (58)
T PF09322_consen 6 IFQIYHGEGNVRYGPTGVDLS 26 (58)
T ss_pred eEEEEEcCCceeECCCccchh
Confidence 589999999999999887664
No 43
>PF09887 DUF2114: Uncharacterized protein conserved in archaea (DUF2114); InterPro: IPR008303 There are currently no experimental data for members of this group or their homologues. The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=22.05 E-value=36 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=17.4
Q ss_pred hhcCceeeeeeeccCccccceeec
Q psy12860 72 NLCGVVVSTVDFGSGGWRFEFKST 95 (198)
Q Consensus 72 ~~Egi~w~~i~f~dN~~cidLdeg 95 (198)
.+||-.|..|||-+ ||+.+|+|
T Consensus 183 IK~gaKWt~VDfRN--PciSiDFG 204 (448)
T PF09887_consen 183 IKEGAKWTDVDFRN--PCISIDFG 204 (448)
T ss_pred hhhccccccccccC--ceeEeecc
Confidence 45666799999976 99888764
No 44
>KOG2422|consensus
Probab=20.72 E-value=22 Score=34.20 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhcC
Q psy12860 185 LHDRMRQFQRRGC 197 (198)
Q Consensus 185 l~~lm~~l~r~~~ 197 (198)
+.+-|..+++|+|
T Consensus 345 l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 345 LFRYMQSLAQRGC 357 (665)
T ss_pred HHHHHHHHHhcCC
Confidence 6777888888888
Done!