RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12860
(198 letters)
>gnl|CDD|239634 cd03579, NTR_netrin-1_like, NTR domain, Netrin-1-like subfamily;
The C-terminal NTR domain of netrins is also called
domain C in the context of C. elegans netrin UNC-6.
Netrins are secreted proteins that function as tropic
cues in the direction of axon growth and cell migration
during neural development. These proteins may be
chemoattractive to some neurons and chemorepellant for
others. In the case of netrin-1, attraction and
repulsion responses are mediated by the DCC and UNC-5
receptor families. The biological activities of C.
elegans UNC-6, which may either attract or repel
migrating cells or axons, are mediated by its different
domains. The C-terminal NTR domain of UNC-6 has been
shown to inhibit axon branching activity.
Length = 115
Score = 115 bits (289), Expect = 2e-33
Identities = 43/100 (43%), Positives = 71/100 (71%), Gaps = 1/100 (1%)
Query: 96 IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
+ ++ + EW +FT+N+Q++YKR S+L++G LW+ KDL CKCPK+K+ K Y
Sbjct: 11 VQAQVLSRETAGEWAKFTVNVQTVYKRGT-SRLRRGDQPLWVPRKDLACKCPKLKVGKSY 69
Query: 156 LILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
L+LGK+++ + GL ++ +S+V+EW+DE R+R+FQRR
Sbjct: 70 LLLGKDEDSPERGGLILDKRSLVIEWRDEWARRLRRFQRR 109
>gnl|CDD|214759 smart00643, C345C, Netrin C-terminal Domain.
Length = 114
Score = 63.2 bits (154), Expect = 3e-13
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKI-KLNKPYLILGKE---KE 163
+ ++T+ I + K D +L +G L + C+CP + KL K YLI+GK +
Sbjct: 25 GFDKYTVKILEVIKSGTD-ELVRGKNKLRVFISRASCRCPLLLKLGKSYLIMGKSGDLWD 83
Query: 164 GNQPSGLTMNAKSIVVEWKDELHDRMRQFQR 194
+ S V EW E R+R+ Q+
Sbjct: 84 AKGRGQYVLGKNSWVEEWPTEEECRLRRLQK 114
>gnl|CDD|216684 pfam01759, NTR, UNC-6/NTR/C345C module. Sequence similarity
between netrin UNC-6 and C345C complement protein family
members, and hence the existence of the UNC-6 module,
was first reported in. Subsequently, many additional
members of the family were identified on the basis of
sequence similarity between the C-terminal domains of
netrins, complement proteins C3, C4, C5, secreted
frizzled-related proteins, and type I pro-collagen
C-proteinase enhancer proteins (PCOLCEs), which are
homologous with the N-terminal domains of tissue
inhibitors of metalloproteinases (TIMPs). The TIMPs are
classified as a separate family in Pfam (pfam00965).
This expanded domain family has been named as the NTR
module.
Length = 108
Score = 62.4 bits (152), Expect = 5e-13
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 96 IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
K+ + +T+ ++ +YK D +++ G V L++ +DL CKCPK+ K Y
Sbjct: 10 YKVKVLSVEEEGSFDIYTVRVKEVYKEGTD-RVRGGKVRLFVSRRDL-CKCPKLLPGKEY 67
Query: 156 LILGKE--KEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQR 194
LI+GK + ++ + V +W D+ R+R+ Q+
Sbjct: 68 LIMGKSGDLDSKGRGRYVLDPNTWVEKWPDKWECRLRRLQK 108
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 53.0 bits (127), Expect = 2e-08
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINYANE LQYYFNQH
Sbjct: 395 FEQLCINYANEQLQYYFNQH 414
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 52.5 bits (127), Expect = 2e-08
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINYANE LQ +FNQH
Sbjct: 387 FEQLCINYANEKLQQFFNQH 406
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 50.3 bits (121), Expect = 1e-07
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINYANE LQ +FNQH
Sbjct: 380 FEQLCINYANEKLQQFFNQH 399
>gnl|CDD|239600 cd03523, NTR_like, NTR_like domain; a beta barrel with an
oligosaccharide/oligonucleotide-binding fold found in
netrins, complement proteins, tissue inhibitors of
metalloproteases (TIMP), and procollagen C-proteinase
enhancers (PCOLCE), amongst others. In netrins, the
domain plays a role in controlling axon branching in
neural development, while the common function of these
modules in TIMPs appears to be binding to metzincins. A
subset of this family is also known as the C345C domain
because it occurs as a C-terminal domain in complement
C3, C4 and C5. In C5, the domain interacts with various
partners during the formation of the membrane attack
complex.
Length = 105
Score = 47.5 bits (113), Expect = 1e-07
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 3/97 (3%)
Query: 96 IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
+ KI E + V++ + I +YK K + P + + Y
Sbjct: 10 VRAKIKEIKEENDDVKYEVKIIKIYKTGKAKADKADLR-FYYTAPACCPCHPILNPGREY 68
Query: 156 LILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQF 192
LI+GKE++ GL ++ S V W + R+
Sbjct: 69 LIMGKEED--SQGGLVLDPLSFVEPWSPLSLRQDRRL 103
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 49.4 bits (118), Expect = 3e-07
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 33 NKQKLVFEQLCINYANEHLQYYFNQH 58
N +K FEQLCIN ANE +QYYFNQH
Sbjct: 385 NFKKNSFEQLCINIANEQIQYYFNQH 410
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 49.2 bits (117), Expect = 4e-07
Identities = 16/20 (80%), Positives = 18/20 (90%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINYANE+LQY FN+
Sbjct: 379 FEQLCINYANENLQYLFNKI 398
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 47.0 bits (112), Expect = 2e-06
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CIN NE LQ +FNQH
Sbjct: 385 FEQFCINLTNEKLQQHFNQH 404
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 46.9 bits (112), Expect = 2e-06
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIV 62
FEQLCINYANE LQ +FN H +
Sbjct: 381 FEQLCINYANEKLQQFFNHHMFKL 404
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 46.7 bits (111), Expect = 3e-06
Identities = 15/20 (75%), Positives = 18/20 (90%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCIN+ANE+LQ +F QH
Sbjct: 380 FEQLCINFANENLQQFFVQH 399
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 46.2 bits (110), Expect = 4e-06
Identities = 16/20 (80%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINYANE LQ FNQH
Sbjct: 386 FEQFCINYANEKLQQQFNQH 405
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 44.5 bits (106), Expect = 1e-05
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 392 FEQLCINYTNEKLQQFFNHH 411
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 43.7 bits (103), Expect = 3e-05
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 35 QKLVFEQLCINYANEHLQYYFNQH 58
K FEQ CINYANE LQ +FN+H
Sbjct: 379 DKNSFEQFCINYANERLQQHFNRH 402
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 43.4 bits (103), Expect = 3e-05
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + + +KK+K+K K K KK+ + K I ++K
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 42.2 bits (100), Expect = 8e-05
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +KK+K+K+K K KK+ + K R K
Sbjct: 395 VLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 41.9 bits (99), Expect = 9e-05
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + K+ +KK+++K+K K KK+ + +N K
Sbjct: 391 PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGK 424
Score = 41.5 bits (98), Expect = 1e-04
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K KK K+ ++K+K+K+K K KK+ R+ + +
Sbjct: 388 TGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422
Score = 41.5 bits (98), Expect = 1e-04
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KK K+ +KK+K+K+K K K R++
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT 419
Score = 39.9 bits (94), Expect = 4e-04
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P K K KK K+ +KK+K+K+K + K++
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415
Score = 39.9 bits (94), Expect = 5e-04
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K KK ++ +KK+K+K+K K++ + +
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHR 417
Score = 39.5 bits (93), Expect = 6e-04
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KK K+ KK+K+K+K K KK K
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTK 420
Score = 37.6 bits (88), Expect = 0.002
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+K K +K K KK+ R K K++K
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPSG 430
Score = 33.0 bits (76), Expect = 0.088
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ + K K KK+ + K K++K
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 33.0 bits (76), Expect = 0.091
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
+PK+ +KK K KK K+ +KK+ ++ V
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKV 412
Score = 31.8 bits (73), Expect = 0.20
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
+K K K KK+ + K K++K
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 28.8 bits (65), Expect = 1.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
L+ K K ++K K KK K+ K+K
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEK 405
Score = 28.4 bits (64), Expect = 2.9
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKK 28
++ + K KK+ + + K++K
Sbjct: 404 EKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 43.5 bits (103), Expect = 3e-05
Identities = 16/20 (80%), Positives = 17/20 (85%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FNQH
Sbjct: 446 FEQLCINYTNEKLQQFFNQH 465
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 41.5 bits (98), Expect = 1e-04
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
PK KKK+++KK +K+KKKKK+KKK K R K+
Sbjct: 380 PKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKG 412
Score = 40.3 bits (95), Expect = 3e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KP K+++KK +KRKKKKK+KKK KK+ + +K
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 38.4 bits (90), Expect = 0.001
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
+ PK +++KK +K++KKKK+KKK KK+K + +
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
++ K +K+KKKKK++KK KK+KKK +K
Sbjct: 387 REEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 35.3 bits (82), Expect = 0.013
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K K KKK++++K +K+KKKKK+KK K+K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRK 409
Score = 33.4 bits (77), Expect = 0.057
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ + +K+K K K+K+++KK +K+KKK + K+K
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKK 404
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 38.3 bits (90), Expect = 0.002
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 39 FEQLCINYANEHLQYYF 55
FEQ CINY NE LQ F
Sbjct: 384 FEQFCINYVNEKLQQIF 400
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 37.8 bits (88), Expect = 0.002
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 39 FEQLCINYANEHLQYYFNQ 57
FEQ CINY NE LQ +FN+
Sbjct: 415 FEQFCINYCNEKLQQFFNE 433
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 36.4 bits (85), Expect = 0.003
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
K LK +K +KK +K K K +KKK K + +F
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100
Score = 33.3 bits (77), Expect = 0.038
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K +K +K+ +K K K +KKK + + K
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPK 96
Score = 31.3 bits (72), Expect = 0.16
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCI 44
+L KK+ K K +KK +K K K + K K + +
Sbjct: 61 ALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 31.3 bits (72), Expect = 0.17
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ K +KK +K + K +KKK KK++
Sbjct: 67 ELKAWEKAEKKAEKAKAKAEKKKAKKEEP 95
>gnl|CDD|239636 cd03581, NTR_Sfrp3_like, NTR domain, Secreted frizzled-related
protein (Sfrp) 3-like subfamily; composed of proteins
similar to human Sfrp3 and Sfrp4. Sfrps are soluble
proteins containing an NTR domain C-terminal to a
cysteine-rich Frizzled domain. They show diverse
functions and are thought to work in Wnt signaling
indirectly, as modulators or antagonists by binding Wnt
ligands, and directly, via the Wnt receptor, Frizzled.
They participate in regulating the patterning along the
anteroposterior axis in vertebrates. Human Sfrp3 may
suppress the growth and invasiveness of
androgen-independent prostate cancer cells.
Length = 111
Score = 35.1 bits (81), Expect = 0.005
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 130 KGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRM 189
+ V L+ ++ C CP + N+ Y+I+G E E S L + S+ +WKD L ++
Sbjct: 45 RDTVTLYTNS---GCLCPPLTPNEEYIIMGYEDEER--SRLLLVEGSLAEKWKDRLGKKV 99
Query: 190 RQFQRR 195
+++ ++
Sbjct: 100 KRWDQK 105
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 34.8 bits (80), Expect = 0.013
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K KKK + K+RKKKKK+KKKKKK+
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 33.6 bits (77), Expect = 0.030
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNK 34
K KKKK + K++KKKKK+KKKK +
Sbjct: 143 KHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 33.6 bits (77), Expect = 0.030
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K KKKK + K +KKKKK+KKKKKK
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKKKKKK 167
Score = 33.3 bits (76), Expect = 0.043
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
KK KKKK + K++KKKKK+KKK + +
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 32.5 bits (74), Expect = 0.069
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KK KKKK + K++KKKKK+K + K++
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKR 168
Score = 32.5 bits (74), Expect = 0.071
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +KK KKKK K++KKKKK+KK + K+
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 30.2 bits (68), Expect = 0.52
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ LK +KK KK+K + K++KKKKK + K+K
Sbjct: 135 EGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Score = 27.5 bits (61), Expect = 4.3
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKK 26
+K K K++KKKK++KKKKKK+
Sbjct: 145 KKKKHEDDKERKKKKKEKKKKKKRH 169
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
Provisional.
Length = 330
Score = 34.8 bits (81), Expect = 0.016
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
KK+ K K +KKK+K++ K K ++K +L
Sbjct: 63 KKELKAWHKAQKKKEKQEAKAAKAKSKPRL 92
Score = 34.8 bits (81), Expect = 0.018
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
K LK K +KK++K++ K K K K R
Sbjct: 64 KELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 33.7 bits (78), Expect = 0.052
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+L KK+ K K +KKK+K++ K + K K
Sbjct: 59 ALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 32.1 bits (74), Expect = 0.14
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
L KK+ K + +KKK+K++ K + +F
Sbjct: 61 LDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93
Score = 31.3 bits (72), Expect = 0.28
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKK 28
+ K +KKK+K+ K K K K +
Sbjct: 65 ELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 30.2 bits (69), Expect = 0.57
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K K K +K+K+K++ K K K
Sbjct: 62 DKKELKAWHKAQKKKEKQEAKAAKAKS 88
Score = 27.5 bits (62), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ LK KK+ K K +KKK+K+ K
Sbjct: 54 EELKAALLDKKELKAWHKAQKKKEKQ-EAKAA 84
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 34.4 bits (80), Expect = 0.036
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K + L K KK K +K K+
Sbjct: 820 KLRYLADAPAKDPAGKKAAVKFSRKTKQ 847
Score = 32.5 bits (75), Expect = 0.12
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ P K K +K K++ +K K
Sbjct: 830 KDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 31.7 bits (73), Expect = 0.22
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+KP+ L+ K KK K +K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRK 844
Score = 31.3 bits (72), Expect = 0.34
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
P KK K +K K++ +K
Sbjct: 827 APAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 30.9 bits (71), Expect = 0.50
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNK 34
KK + +K K++ + K
Sbjct: 831 DPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 30.1 bits (69), Expect = 0.87
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KK K +K K++ K
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 30.1 bits (69), Expect = 0.88
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K + KK K ++ K++ +K K
Sbjct: 829 AKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 29.0 bits (66), Expect = 1.9
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K KK K +K K++
Sbjct: 825 ADAPAKDPAGKKAAVKFSRKTKQQYVAS 852
Score = 26.7 bits (60), Expect = 9.1
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKI 31
L +K +K + K KK
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAA 838
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 33.8 bits (78), Expect = 0.051
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ K KK++K +KK +K++ +K KKK K
Sbjct: 410 ERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Score = 31.8 bits (73), Expect = 0.19
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P KK +KK++K +KK +K++ +K + K +
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 29.9 bits (68), Expect = 0.83
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K + ++K +KK ++++ +K KKK + K+
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 29.1 bits (66), Expect = 1.8
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKK 29
+ +KK +KK+++ +KK +K++ +K
Sbjct: 407 SPAERKKLRKKQRKAEKKAEKEEAEK 432
Score = 28.4 bits (64), Expect = 2.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
++KK RKK++K +KK +K+ K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAA 435
Score = 28.4 bits (64), Expect = 3.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q+ K +K++ +K KKK + KK +
Sbjct: 418 QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 32.4 bits (74), Expect = 0.059
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+K K K+KKKKKKK+KKK KK KKKK
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 31.6 bits (72), Expect = 0.12
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +K+ K+K K+KK+KKKKKKKKKK +K+
Sbjct: 99 KIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 31.2 bits (71), Expect = 0.17
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
Q K K+KK+KKK+KKKKKKK KK + K
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.34
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
QK K+K K+K++KKKKKKKKKKK + K
Sbjct: 98 QKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132
Score = 30.0 bits (68), Expect = 0.39
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
K K+KK+KK+KKKKKKKK KK + K+
Sbjct: 108 KAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.0 bits (68), Expect = 0.44
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
LK+K K+KK++KKKKKKKKKK K K+K
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 29.7 bits (67), Expect = 0.54
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + K+K K+KK+KKKKKKKKKKK + +K
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKK 133
Score = 29.3 bits (66), Expect = 0.75
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K K+KK+K+KKKKKKKKK KK K+K
Sbjct: 107 EKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 25.8 bits (57), Expect = 9.5
Identities = 16/25 (64%), Positives = 17/25 (68%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKK 25
+K K KKKKKKKK KK KKKK
Sbjct: 111 QKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 33.5 bits (76), Expect = 0.059
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
+ K + K K KK+K +++++KK K + NKQK +++++
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKM 560
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 32.2 bits (73), Expect = 0.071
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
P+ +K KKKKKK KK KK KK KK
Sbjct: 94 PEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 31.8 bits (72), Expect = 0.080
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
P +K KKKKK+ KK KK KK KK
Sbjct: 91 DHPPEPTEKPKKKKKKSKKTKKPKKSSKK 119
Score = 30.6 bits (69), Expect = 0.21
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKK 24
+KPK KKK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 28.3 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 16 KRKKKKKKKKKKKKKIRNKQK 36
K KKKKKK KK KK ++ +K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 27.2 bits (60), Expect = 3.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 14 KKKRKKKKKKKKKKKKKIRNK 34
K K+KKKK KK KK KK K
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 33.1 bits (76), Expect = 0.078
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
Q+ K K+ K++K+ +K KK+++KKKK++ +K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKA 589
Score = 30.0 bits (68), Expect = 0.96
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
K +++K++K+ K++K+ +K KK+ K+K +
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL 583
Score = 27.7 bits (62), Expect = 4.8
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K++ +++K +K+ K++K+ +K++ +++
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEE 577
>gnl|CDD|220267 pfam09494, Slx4, Slx4 endonuclease. The Slx4 protein is a
heteromeric structure-specific endonuclease found in
fungi. Slx4 with Slx1 acts as a nuclease on branched DNA
substrates, particularly simple-Y, 5'-flap, or
replication fork structures by cleaving the strand
bearing the 5' non-homologous arm at the branch junction
and thus generating ligatable nicked products from
5'-flap or replication fork substrates.
Length = 627
Score = 33.0 bits (75), Expect = 0.10
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAI 61
+ KKKK K+ K +K+ K+K KKI++ E + A L Y + +
Sbjct: 70 RVPKKKKIKKPKLRKRTKRKNKKIKSLTAFNEENFETDRAPSLLSYLSGKQSKV 123
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 32.3 bits (74), Expect = 0.12
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
++ K+ K K KK K K ++K+K K+ + ++ L
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGL 81
Score = 30.0 bits (68), Expect = 0.69
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+ K KK K K ++K+K K++K++K +
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 30.0 bits (68), Expect = 0.72
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K+ KK K K +K+K K++K++K +R ++
Sbjct: 54 AKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 29.6 bits (67), Expect = 0.80
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
++K+++K K K K KK K KI K+K
Sbjct: 43 EEKEEEKAKVAAKAKAKKALKAKIEEKEKA 72
Score = 28.5 bits (64), Expect = 1.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K+++K K K K KK K K + + K K
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAK 73
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K + K KK K + ++K+K K++K++ ++
Sbjct: 50 AKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 28.5 bits (64), Expect = 2.3
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCI 44
+ + K K K K+ K K ++K+K K ++K + E
Sbjct: 46 EEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 27.7 bits (62), Expect = 3.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 9 KKKKKKKKRKKKKKKKKKKKK 29
K K +K + KKKK K K K
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAK 214
Score = 27.7 bits (62), Expect = 4.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIR 32
+K K +K K KKKK K K K+
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLN 216
Score = 27.7 bits (62), Expect = 4.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ + K K K K KK K K ++K+K
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEK 71
Score = 27.3 bits (61), Expect = 5.6
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKK 30
L +K K +K K KKKK K K
Sbjct: 190 LINEKLKAEKAAKGGKKKKGKAKA 213
Score = 26.5 bits (59), Expect = 8.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K + K K K +K K K ++K+K R K++
Sbjct: 44 EKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEE 78
Score = 26.5 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K +K K KKKK K K K +
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGAND 222
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 32.1 bits (73), Expect = 0.12
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
+++KKKK K K+ K K KK + KKK R
Sbjct: 86 TTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 26.3 bits (58), Expect = 8.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 15 KKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANE 49
KK+K K KK K K KK +K+K +Y E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREGWNNFSYFPE 125
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 30.4 bits (69), Expect = 0.12
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKI 31
L KKKKKKKK+K + K KK
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKA 46
Score = 26.2 bits (58), Expect = 4.1
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKK 30
KKKKKKKKK + K KK
Sbjct: 25 KKKKKKKKKAEDTAATAKAKKAT 47
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 31.8 bits (73), Expect = 0.16
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q K +K+K R+++K K K +KK + + +
Sbjct: 118 QAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQ 152
Score = 30.3 bits (69), Expect = 0.46
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ + +K+K +++RK K K +KK+K K +
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPE 155
Score = 28.7 bits (65), Expect = 1.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + +K+K +R++K K K +KK+ QK
Sbjct: 119 AKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQK 153
Score = 28.4 bits (64), Expect = 2.0
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
+K ++++K K K +KK+K + + + +
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 28.4 bits (64), Expect = 2.1
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ +++ KKR+ +K+K +++ + K K
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPK 141
Score = 28.4 bits (64), Expect = 2.2
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCIN 45
+K K+ ++++K K K +KK+K + +K + ++ +L +
Sbjct: 127 EKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVG 170
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
Q+ K + +K+K ++++K K K +K
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRK 145
Score = 27.6 bits (62), Expect = 3.5
Identities = 8/35 (22%), Positives = 21/35 (60%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q+ + KK++ +++K ++++K K K K++
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKR 147
Score = 26.4 bits (59), Expect = 9.3
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + ++ +++ KK++ +K+K R ++K
Sbjct: 109 KVQAQRAEQQAKKREAAGEKEKAPRRERK 137
>gnl|CDD|239629 cd03574, NTR_complement_C345C, NTR/C345C domain; The NTR domains
that are found in the C-termini of complement C3, C4 and
C5, are also called C345C domains. In C5, the domain
interacts with various partners during the formation of
the membrane attack complex, a fundamental process in
the mammalian defense against infection. It's role in
component C3 and C4 is not well understood.
Length = 147
Score = 31.2 bits (71), Expect = 0.17
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPK-IKLNKPYLILGKE 161
+ + + + K D A +I + C CP +K + YLI+G +
Sbjct: 40 FRIYKARVTEVIKSGSDDVQNGNARRTFIIRES--CDCPLRLKEGRHYLIMGSD 91
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 32.0 bits (73), Expect = 0.18
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ P K ++ KK++ + ++KKK+KK K +
Sbjct: 359 KPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Score = 31.2 bits (71), Expect = 0.30
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
KP + K ++ KK+R + ++KKK+KK ++ L
Sbjct: 359 KPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 30.1 bits (68), Expect = 0.68
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
PK K K ++ K+++ + ++KKK+K
Sbjct: 358 PKPPTKAKPERDKKERPGRYRRKKKEK 384
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
KP+ KK++ + +RKKK+KK K +++ ++N
Sbjct: 365 KPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 27.7 bits (62), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K K K K K +R KK++ + ++KK
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKK 381
Score = 27.0 bits (60), Expect = 6.6
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ + LK+K K + K ++ KK++ + R K+K
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKK 382
Score = 27.0 bits (60), Expect = 6.6
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
++ K + + ++KK++KK K +++ +
Sbjct: 367 ERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 31.8 bits (73), Expect = 0.18
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +KK+++++K+KKKK KKK +++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEE 446
Score = 31.4 bits (72), Expect = 0.24
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + K KK +K KK++++KK+KKKK +K
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKK 439
Score = 31.0 bits (71), Expect = 0.34
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KK KK ++ +KK++++KK+KK +
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAG 437
Score = 31.0 bits (71), Expect = 0.38
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K +KK++++K++KKKK KKK+ +++
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEE 447
Score = 30.3 bits (69), Expect = 0.75
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
+ K +++KK+KKK+ KKK++++++ + K++ E+
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 29.9 bits (68), Expect = 0.79
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KK +K ++K++++KK+KKKK K+K
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKK 440
Score = 29.9 bits (68), Expect = 0.96
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K +K +KKR+++KK+KKKK + K++
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 29.5 bits (67), Expect = 1.1
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +K +KK+ ++KK+KKKK + +++
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEE 443
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
KK KK +K +K +KK++++ + K+K F
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ L KK KK KK +K +KK+++ + ++K
Sbjct: 400 EFLTGSKKATKKIKKIVEKAEKKREEEKKEKK 431
Score = 28.3 bits (64), Expect = 2.5
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
+ + K+KKKK KKK+++++++K+K +++
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 28.0 bits (63), Expect = 3.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
KK KK K+ +K +KK++++K K+K
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAG 437
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 32.0 bits (72), Expect = 0.18
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
P KK KK KKK KK+K+K++ K KK +
Sbjct: 193 PAVEKKSKKPKKKEKKEKEKERDKDKKKEVEG 224
Score = 32.0 bits (72), Expect = 0.19
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
+KK KK +KK+KK+K+K++ K + K+ F+ L
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEVEGFKSL 228
Score = 31.2 bits (70), Expect = 0.35
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K KK KKK+KK K+K++ K KKK+ K L
Sbjct: 197 KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLL 229
Score = 31.2 bits (70), Expect = 0.37
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
+K KKKK++K+K +KKKKKK +
Sbjct: 275 KKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 30.8 bits (69), Expect = 0.46
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
KK KKK+K++K+K++ K KKK++ + L+
Sbjct: 200 KKPKKKEKKEKEKERDKDKKKEVEGFKSLLL 230
Score = 30.4 bits (68), Expect = 0.71
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ KS K KKK+KK+++K++ K KKK+ +
Sbjct: 194 AVEKKSKKPKKKEKKEKEKERDKDKKKEVE 223
Score = 29.3 bits (65), Expect = 1.5
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKK 30
KS K KKKK++K K++KKKKKK
Sbjct: 276 KSPKHKKKKQRKEKEEKKKKKKHHHH 301
Score = 28.5 bits (63), Expect = 2.4
Identities = 8/30 (26%), Positives = 25/30 (83%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
L+++++ +++ +K K++KKK++K+ R +++
Sbjct: 84 LEEERRHRQRLEKDKREKKKREKEKRGRRR 113
Score = 28.5 bits (63), Expect = 2.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+ + KK K KKK+++K+K++KKKKKK + +
Sbjct: 268 DAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 28.5 bits (63), Expect = 3.0
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKK 28
L+K K++KKKR+K+K+ +++
Sbjct: 94 LEKDKREKKKREKEKRGRRRHH 115
Score = 27.7 bits (61), Expect = 4.2
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKK 27
+ + K K++KKK+ K+K+ +++
Sbjct: 90 HRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.7 bits (61), Expect = 4.4
Identities = 7/33 (21%), Positives = 24/33 (72%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
+++ + +++ +K K+ KKK++K+K+ +++ +
Sbjct: 84 LEEERRHRQRLEKDKREKKKREKEKRGRRRHHS 116
Score = 27.7 bits (61), Expect = 5.0
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
++ +++ +K K++KKK++K+K+ R L
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRHHSL 117
Score = 27.0 bits (59), Expect = 7.6
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P S + K ++++R +++ +K K++KK R K+K
Sbjct: 76 PMSDQYVKLEEERRHRQRLEKDKREKKKREKEK 108
Score = 26.6 bits (58), Expect = 9.8
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+++ +++ ++ K++KKK++K+K+ R +
Sbjct: 87 ERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 31.9 bits (73), Expect = 0.18
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
K + KKK K+ K K KK K KKI
Sbjct: 254 SKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 31.1 bits (71), Expect = 0.28
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+ K K++ KKKK K+ K K KK + +K+
Sbjct: 249 EKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K+K K++ K+KK K+ K K K
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALK 273
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ + +K K++ KK+K K+ K K KK
Sbjct: 245 ESRAEKKRKSKEEIKKKKPKESKGVKALKK 274
Score = 28.1 bits (63), Expect = 3.1
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
+ + +KK+K +++ KKKK K+ K ++ +K+V
Sbjct: 244 AESRAEKKRKSKEEIKKKKPKESKGVKALKKVV 276
Score = 26.9 bits (60), Expect = 6.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKI 31
++ KK+K K++ +KKK K+ K K
Sbjct: 247 RAEKKRKSKEEIKKKKPKESKGVKALK 273
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.7 bits (72), Expect = 0.19
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KPK K +KK KK K K K K K K K++ + K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPK 116
Score = 29.0 bits (65), Expect = 1.2
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K +KK KK K K K K K K K K + K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Score = 28.2 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K K+K K KK KK K K K K + K K
Sbjct: 76 PPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPK 110
Score = 27.8 bits (62), Expect = 3.1
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K K K K K K K K K K + K K +
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Score = 27.1 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
KPK K K K K + K KK K K
Sbjct: 99 PKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 26.7 bits (59), Expect = 7.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+KPK K K K K + K + K KK K
Sbjct: 94 PKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Score = 26.7 bits (59), Expect = 8.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+K K K K K + K K K + K KK
Sbjct: 90 PEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119
Score = 26.3 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ K KK K K K + K K K K + K
Sbjct: 89 KPEKKPKKPKPKPKPKPKPKPKVKPQPKP 117
Score = 26.3 bits (58), Expect = 9.8
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
KPK K K K K + + K KK K +
Sbjct: 97 PKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPA 130
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 32.1 bits (73), Expect = 0.20
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKI 31
+KKKKKKK ++KKKKK ++ K+I
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQI 707
Score = 29.5 bits (66), Expect = 1.3
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 13 KKKKRKKKKKKKKKKKKKIRNKQ 35
+KKK+KKK K+KKKKK + +KQ
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.1 bits (65), Expect = 1.8
Identities = 15/24 (62%), Positives = 18/24 (75%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKK 29
S KKKKKKK K KKKKK ++ K+
Sbjct: 683 SRKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 3.3
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 7/38 (18%)
Query: 15 KKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQ 52
+K+KKKKK K+KKKKK R K + +A E+++
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQI-------HALENIE 714
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 32.0 bits (73), Expect = 0.20
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K K K KK RK KK K +K K K
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAK 804
Score = 31.3 bits (71), Expect = 0.38
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKK-----KKIRNKQK 36
P S + +KK K + KK +K KK +KI K
Sbjct: 765 PDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATK 802
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KPK+ KK +K KK K +K K R +K
Sbjct: 775 AKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809
Score = 28.6 bits (64), Expect = 2.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+ +KK K K KK +K KK QK+
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 28.6 bits (64), Expect = 2.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+K K KK +K KK K +K + K+
Sbjct: 772 EKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKR 805
Score = 26.6 bits (59), Expect = 9.8
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +K KK K +K K K+ K+
Sbjct: 778 KAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 30.8 bits (70), Expect = 0.26
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKK 30
K+ KK+ K++KK++KKKKKKK KK
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGN 107
Score = 30.4 bits (69), Expect = 0.27
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
+K K +K KK+ KR+KKK+KKKKKKK + +K
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111
Score = 26.9 bits (60), Expect = 5.0
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
K KKK+KKKKK+K KK KK++K+ ++ ++ E
Sbjct: 89 KRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDE 124
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.8 bits (72), Expect = 0.27
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ L++KKKK++K K+K+ KK K +K
Sbjct: 15 EEELERKKKKEEKAKEKELKKLKAAQK 41
Score = 26.8 bits (59), Expect = 8.8
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ ++K+KK++K K+K+ KK++ QK
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQK 41
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 30.7 bits (70), Expect = 0.30
Identities = 9/37 (24%), Positives = 26/37 (70%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
++ L +K+ K KR+K+++ ++K+K+ ++ + K++
Sbjct: 118 EQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 31.3 bits (71), Expect = 0.31
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K K+ KK K K K KKK K K K K++
Sbjct: 749 KKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKR 783
Score = 29.4 bits (66), Expect = 1.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
PK+ +KK K KK+ K K K K ++K K
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAK 775
Score = 28.6 bits (64), Expect = 2.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKK 29
K K KKK K K KK KK+
Sbjct: 759 STKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 28.6 bits (64), Expect = 2.7
Identities = 13/33 (39%), Positives = 14/33 (42%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P K K KKK K K K KKK +K
Sbjct: 746 PYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKK 778
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 30.8 bits (70), Expect = 0.32
Identities = 17/28 (60%), Positives = 18/28 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K K KK KK+K K KKKKKKKKK
Sbjct: 165 KEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 30.5 bits (69), Expect = 0.41
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKK 30
K KK+K + K KKKKKKKKKK
Sbjct: 171 KDKKEKMVEPKGSKKKKKKKKKK 193
Score = 30.5 bits (69), Expect = 0.46
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K KK+ KK+KK KK KK+K + K + K+K
Sbjct: 155 KEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Score = 30.1 bits (68), Expect = 0.54
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKK 28
K K KK+K + K KKKKKKKKKK
Sbjct: 168 KEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 30.1 bits (68), Expect = 0.55
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KK+KKKKK+ KK+KK+KK KK+K+ +
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Score = 29.3 bits (66), Expect = 0.95
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K KKKKK+ KK KK+KK KK+K + + +K
Sbjct: 152 EEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Score = 29.3 bits (66), Expect = 1.0
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ + K+KKKKK+ +K+KK+KK KK+K + K
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 28.5 bits (64), Expect = 1.5
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K + ++++KK++KKKK+ KK+KK+K K+K
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEK 176
Score = 28.1 bits (63), Expect = 2.1
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ ++KK+KKKK++ KK+KK+KK KK
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 27.4 bits (61), Expect = 4.2
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K +++++KK+KK+KK+ KK+KK+KK + K
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMV 178
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 31.2 bits (71), Expect = 0.36
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKK 28
+P +L K+K++ +K+KKKK KK K
Sbjct: 349 RPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 14 KKKRKKKKKKKKKKKKKIRN 33
K+KR+ KK+KKKK KK++
Sbjct: 356 KRKREGDKKQKKKKSKKLKL 375
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
+ L K+K++ KK+KKKK KK K+
Sbjct: 348 ERPLALSPKRKREGDKKQKKKKSKKLKL 375
Score = 27.3 bits (61), Expect = 5.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRN 33
K+K++ KK+KKKK KK K N
Sbjct: 356 KRKREGDKKQKKKKSKKLKLTFN 378
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 31.3 bits (71), Expect = 0.37
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKI 31
+ K KK KKKKKKKKK++K +
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 30.1 bits (68), Expect = 0.78
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKK 27
+ K KK KKK+KKKKK++K
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 30.1 bits (68), Expect = 0.84
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKK 24
+ KK KKKKKK+KK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 29.7 bits (67), Expect = 1.00
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKK 26
+ +K KK KKKK+KKKK++K
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDL 292
Score = 29.0 bits (65), Expect = 1.7
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKK 30
+ K KK +KKKKKKKK++K
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDL 292
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRN 33
+ K K+ KKKKKKKKK++K +
Sbjct: 267 YDVSEMVKFKKPKKKKKKKKKRRKDLD 293
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 31.0 bits (71), Expect = 0.39
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKK 28
L+K++ KKKK++KK KK + +K
Sbjct: 732 LEKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 1.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKI 31
+K++ KK+KK+KK KK + +KI
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 27.9 bits (63), Expect = 3.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 13 KKKKRKKKKKKKKKKKKKIRN 33
+K++ KKKKK+KK KK ++
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 9 KKKKKKKKRKKKKKKKKKKKK 29
+K++ KKK+K+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.1 bits (61), Expect = 8.2
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 12 KKKKKRKKKKKKKKKKKKKIRN 33
+K++ +KKKK+KK KK + +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 30.4 bits (69), Expect = 0.45
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K KS +++KKKK+KK KKKK KK + +
Sbjct: 170 RDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 30.6 bits (69), Expect = 0.49
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 39 FEQLCINYANEHLQYYFNQHRAIV 62
FE+LC NY E LQ F HR V
Sbjct: 397 FEELCHNYLQERLQLLF-HHRTFV 419
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 30.0 bits (68), Expect = 0.61
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQ 57
++ +S KK +K+ +KR+ K + K K K RN+ L + AN + YF Q
Sbjct: 173 ERSRSSKKIEKEVEKRQAKYSEAKLKCTKARNEY-----LLNLAAANATIHKYFVQ 223
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4;
Provisional.
Length = 191
Score = 29.8 bits (67), Expect = 0.63
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
K+ KKKK +K+K KK KKKKK+K + E
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
Score = 27.5 bits (61), Expect = 3.5
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P KKKK RKKK KK KKKKK + +
Sbjct: 45 IPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVP 78
Score = 26.7 bits (59), Expect = 7.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCIN 45
KK KKKK +KKK KK KK + +++ V E
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEE 84
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 30.2 bits (68), Expect = 0.67
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+ K K + K+++++K++ K++KKKKK + K+
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKE 126
Score = 28.7 bits (64), Expect = 2.3
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
+ K+++K+K++ K++KKKKK+K K K + E+
Sbjct: 97 EPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEA 137
Score = 28.3 bits (63), Expect = 3.3
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
K + K++ K+K+ K+K+K+K+KK ++ R++++
Sbjct: 128 PKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEK 164
Score = 27.2 bits (60), Expect = 6.5
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K K++ K +K K++ K+K+ K+K + K+K
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEK 152
Score = 27.2 bits (60), Expect = 7.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
P + K K+ K K+++K+K++ K K+K +
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 27.2 bits (60), Expect = 7.8
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KPK K +K K++ K+K+ K+K+K+K + ++
Sbjct: 123 KPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 26.8 bits (59), Expect = 8.7
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++PK K K++ K+KR K+K+K+K+KK + +
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 29.9 bits (67), Expect = 0.73
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
P++ + KK KK + K K K KK K
Sbjct: 142 PEAKEVKKPKKGQSPKVPKAPKPKKPK 168
Score = 27.5 bits (61), Expect = 4.5
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
Q PK K K KK K+K + K I + K
Sbjct: 154 QSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 26.8 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
P K+ KK KK + K K K KK
Sbjct: 139 TAPPEAKEVKKPKKGQSPKVPKAPKPKKP 167
Score = 26.8 bits (59), Expect = 8.0
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K KK + K + K KK KKK K
Sbjct: 146 EVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVK 179
Score = 26.4 bits (58), Expect = 9.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
K +S K K K K+ KKK + K+
Sbjct: 152 KGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGID 184
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain.
This presumed domain is found at the N-terminus of
Ribosomal L30 proteins and has been termed RL30NT or
NUC018.
Length = 71
Score = 28.0 bits (63), Expect = 0.73
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
LKK+K+ +K R K+ KK+ KK + K+KL+F+
Sbjct: 3 LKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFK 36
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 30.2 bits (68), Expect = 0.76
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 1 MQKPKSLKKKKKK------KKKRKKKKKKKKKKKKKIRNKQKLVFEQLCI 44
+ K KKK K + KR+K++K+KK KK+ + L ++LCI
Sbjct: 124 TKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVLLDLHLDRLCI 173
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 29.7 bits (67), Expect = 0.85
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKK 28
K S +K + K KK KK
Sbjct: 184 AAKLSSTASSGDEKSPKSKAAPKKAGKK 211
Score = 26.6 bits (59), Expect = 7.8
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+K L ++ K K KK K
Sbjct: 182 KKAAKLSSTASSGDEKSPKSKAAPKKAGK 210
Score = 26.6 bits (59), Expect = 8.4
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKK 28
+ S +K K K KK KK +K
Sbjct: 187 LSSTASSGDEKSPKSKAAPKKAGKKMRK 214
>gnl|CDD|235015 PRK02234, recU, Holliday junction-specific endonuclease;
Reviewed.
Length = 195
Score = 29.5 bits (67), Expect = 0.93
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 17 RKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGK 64
+K + +K KKKK + + E+ IN N YY + A++ K
Sbjct: 7 KKSSQVQKTKKKKVTYANRGMSLEKD-INETN---DYYLSNGIAVIHK 50
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
K + K+K K+K K+ KI + + C
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERC 825
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K K+K+ K KKK+KK+KK +I
Sbjct: 374 ECGNKYKEKEAKEKKKEKKRKKTWARIAEAAA 405
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKK 29
KKK KK KK K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 29.1 bits (66), Expect = 1.2
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKK 30
KKK KK K++K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKK 30
L KKK KK +K+K+K++K+ +K
Sbjct: 11 LVDKKKAKKAKKEKRKQRKQARKG 34
Score = 26.4 bits (59), Expect = 9.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 13 KKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
KKK +K KK+K+K++K+ + E
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGADDGDDEL 42
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.6 bits (67), Expect = 1.2
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q+ KS K K K ++ K KKK+KKKKK +K K
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
Score = 28.9 bits (65), Expect = 1.9
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ K + LK K K K + +K K KKK+KKK
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKK 1181
Score = 28.1 bits (63), Expect = 4.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K L+K K KKK++KKKK K KK
Sbjct: 1163 KGKASKLRKPKLKKKEKKKKKSSADKSKKA 1192
Score = 27.7 bits (62), Expect = 5.6
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCIN 45
++ K K +K K KKK+KKKKK K +V ++
Sbjct: 1158 LKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVD 1202
Score = 27.3 bits (61), Expect = 7.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ SL KKKKK KK +KKK K + +
Sbjct: 1313 RLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Score = 26.9 bits (60), Expect = 9.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
K + K K K K K +K K KKK+K + K +
Sbjct: 1152 IAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSK 1190
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 29.3 bits (66), Expect = 1.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
K+ K +K K R+ +KK KK + K+
Sbjct: 345 KATAKGAQKVKNRRARKKAKKARLAKVA 372
Score = 27.7 bits (62), Expect = 4.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
Q+ + K +K K +R +KK KK + K
Sbjct: 343 QEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 27.3 bits (61), Expect = 5.5
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K +K K ++ +KK KK ++ K
Sbjct: 345 KATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 27.3 bits (61), Expect = 5.6
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKK 28
+K + +K K ++ +KK KK + K
Sbjct: 343 QEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 27.0 bits (60), Expect = 7.3
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K L+K +++ K +K K ++ R K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAK 364
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 29.3 bits (66), Expect = 1.3
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q+ + LKKKK+ K K K+ KKKKKK K
Sbjct: 79 QREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSP 113
Score = 28.1 bits (63), Expect = 2.8
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 1 MQKPKSLKKKKKKKKKRKKKK---KKKKKKKKKIRNK 34
+ K L+++++ KKK++ K K+ KKKKK
Sbjct: 72 EEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPT 108
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 29.1 bits (66), Expect = 1.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
+ L ++ + ++ K+KKKKKKKKKK ++ + E+
Sbjct: 70 DEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEK 109
Score = 26.8 bits (60), Expect = 8.2
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINY 46
+ ++ R ++ K+KKKKKK + K++ + E +C +
Sbjct: 72 HGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEKF 110
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.9 bits (65), Expect = 1.3
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K+K K KKK+ KKKK K K KK + K
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 28.5 bits (64), Expect = 1.5
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K KKKK +KKK K K KK K +K +
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111
Score = 27.7 bits (62), Expect = 3.3
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
QK K KKK KKKK + K KK KK K + +K
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 27.0 bits (60), Expect = 4.9
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKK 30
+K+K K KK+K KKKK K K KK
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKK 102
Score = 26.6 bits (59), Expect = 8.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K K KKKK KKK+ K K KK KK K+
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Score = 26.6 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K KK KK K +KK +K+ + K+ + K
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 28.9 bits (65), Expect = 1.4
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
+KKK R KKK K KK +I LV E L
Sbjct: 153 AEKKKPRSKKKSSKNSKKLRI----DLVGEWLS 181
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIR 32
L K K K + K KK K KI+
Sbjct: 187 LAKHKILIPSLKTRPKGKKYVKIKIK 212
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 29.0 bits (65), Expect = 1.5
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 4 PKSLKKKKKKKKKRKKKKK---KKKKKKKKIRNKQKLVFE 40
+ KK + +KRK +K K KK K + FE
Sbjct: 347 VDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAETAGFE 386
>gnl|CDD|217479 pfam03297, Ribosomal_S25, S25 ribosomal protein.
Length = 105
Score = 27.7 bits (62), Expect = 1.5
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
PK +KK K K KKKK K + K KL
Sbjct: 3 PKKQQKKAAKAAAASAGGKAKKKKWSKGKVKDKL 36
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 29.0 bits (66), Expect = 1.6
Identities = 8/41 (19%), Positives = 30/41 (73%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
++ + L+KK+K+ ++++++ +KK+++ +++ +Q E++
Sbjct: 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 28.3 bits (63), Expect = 1.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKK 27
KPK + ++ +KK +KK+KK
Sbjct: 53 KPKKISAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 28.6 bits (64), Expect = 1.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ + + K + K KKK++ K K +K + K +
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTE 142
Score = 27.0 bits (60), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P++ + K+KKK+ K K +K+K K K K
Sbjct: 113 DPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 26.6 bits (59), Expect = 5.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+ KKK++ K + +K+K K + KK +K KL
Sbjct: 118 KTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPKL 153
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region.
This domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 27.5 bits (62), Expect = 1.6
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNKQK 36
+KKK+K++ K + K+ KK+ +Q+
Sbjct: 61 RKKKEKKEVKAESKRYNAKKLTLEQR 86
Score = 26.4 bits (59), Expect = 4.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 8 KKKKKKKKKRKKKKKKKKK---KKKKIRNKQK 36
KKK+KK+ K + K+ KK +++K R QK
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 29.1 bits (66), Expect = 1.7
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
KKK++ K + K+ KK+ K + EQL
Sbjct: 534 LALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQL 573
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.0 bits (66), Expect = 1.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
L+K +K KKK+KKK K K K + + +
Sbjct: 675 PLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLE 706
Score = 29.0 bits (66), Expect = 1.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K L + +K+ K +KK+KKKKK+K+
Sbjct: 604 VKAHELIEARKRLNKANEKKEKKKKKQKE 632
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 28.8 bits (65), Expect = 1.8
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + K K+K K + KK + +N
Sbjct: 78 KTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALD 113
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KKK K K K KKK K + K
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Score = 28.0 bits (63), Expect = 4.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K + K KKK K + KK +KK + L
Sbjct: 84 KAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDL 118
Score = 28.0 bits (63), Expect = 4.1
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K+ K K KKK K + KK K L
Sbjct: 80 KTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Score = 27.3 bits (61), Expect = 6.4
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
K+ K KKK K + KK +KK +
Sbjct: 82 AAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.4 bits (64), Expect = 1.9
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKK 27
+ KK K K+ RK + KKKKKK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 27.7 bits (62), Expect = 3.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 9 KKKKKKKKRKKKKKKKKKKKK 29
KK K KR +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 26.5 bits (59), Expect = 7.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 10 KKKKKKKRKKKKKKKKKKKKK 30
KK K ++ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+PK K K K K KK +++ K++ K
Sbjct: 96 EPKPKPKPKPKPKPVKKVEEQPKREVKP 123
Score = 28.1 bits (63), Expect = 2.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
PK K K K K + K KK +++ K+
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKRE 120
Score = 27.3 bits (61), Expect = 4.4
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
KPK K K KK ++ K++ K + +
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many
hypothetical proteins.
Length = 98
Score = 27.4 bits (61), Expect = 2.2
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++KK+KKKKK+ K + K KK + ++K+K
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKK 50
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 28.5 bits (64), Expect = 2.3
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKK---KKKKIRNKQKL 37
P +KKKKKKKKK KK K KK K++K R K K
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKK 288
Score = 27.7 bits (62), Expect = 4.4
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
K K KKKK KK K KK K++K +++ K+ E+L
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERL 295
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region
covers both the Brf homology II and III regions. This
region is involved in binding TATA binding protein.
Length = 95
Score = 27.2 bits (61), Expect = 2.4
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
Q+ K LK+K + KKKKK+K KKK+
Sbjct: 32 QEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62
Score = 27.2 bits (61), Expect = 2.5
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++K+ K+K + KKKKK+K + K+
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKKKRD 61
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 28.5 bits (64), Expect = 2.4
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKK 30
L K + ++++ KKKKKKKKKK KK
Sbjct: 171 LLKARLEEERAKKKKKKKKKKTKK 194
Score = 26.9 bits (60), Expect = 6.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+++ ++ KKKKKKKKK KK +
Sbjct: 176 LEEERAKKKKKKKKKKTKKNNATGSSAEAT 205
>gnl|CDD|218991 pfam06326, Vesiculo_matrix, Vesiculovirus matrix protein. This
family consists of several Vesiculovirus matrix
proteins. The matrix (M) protein of vesicular
stomatitis virus (VSV) expressed in the absence of
other viral components causes many of the cytopathic
effects of VSV, including an inhibition of host gene
expression and the induction of cell rounding. It has
been shown that M protein also induces apoptosis in the
absence of other viral components. It is thought that
the activation of apoptotic pathways causes the
inhibition of host gene expression and cell rounding by
M protein.
Length = 229
Score = 28.2 bits (63), Expect = 2.4
Identities = 11/24 (45%), Positives = 11/24 (45%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKK 28
SL K K K K KK K KK
Sbjct: 1 LSLFKLLKLKGKEVASKKSKGSKK 24
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 27.2 bits (61), Expect = 2.5
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNK 34
+K+++K ++ ++ K+ K K+++I K
Sbjct: 3 RKEEEKAQREEELKRLKNLKREEIEEK 29
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KKK +KKKK+KK+KK+ K + + +
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
Score = 27.8 bits (62), Expect = 4.1
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 10/49 (20%)
Query: 3 KPKSLKKKKKKKKKRKKKKK----------KKKKKKKKIRNKQKLVFEQ 41
K KS KKKKKKK+K++ K + KK KK KK K K +
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDV 115
Score = 26.6 bits (59), Expect = 9.7
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 1 MQKPKSLKKKKK-------KKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
S KK KK KKK KKKKKKK+KK+ K + KL F+
Sbjct: 48 KVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKT 95
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 27.8 bits (62), Expect = 2.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+KKKK + K +K+ K+K R K+
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKI 28
Score = 26.2 bits (58), Expect = 9.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
+ KK + K +K+ K+K +KKKI
Sbjct: 1 VRKKKKNRSSNYKVNRKRLKRKDRKKKI 28
>gnl|CDD|206332 pfam14163, SieB, Superinfection exclusion protein B. This family
includes superinfection exclusion proteins. These
proteins prevent the growth of superinfecting phage
which are insensitive to repression. It aborts lytic
development of superinfecting phage.
Length = 151
Score = 27.6 bits (62), Expect = 2.9
Identities = 9/48 (18%), Positives = 26/48 (54%), Gaps = 9/48 (18%)
Query: 15 KKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIV 62
K++ +KK+++++ +KK+++ L E+ + L+ + Q +
Sbjct: 60 KEKYQKKREQERIEKKLKS---LTPEEKAL------LREFLRQGTRTL 98
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 27.4 bits (61), Expect = 3.1
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q+ S KKK+KK R + KK K R +
Sbjct: 71 QQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 28.3 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
M+KPK K +K KKK K KKKKK +
Sbjct: 115 MRKPKP-KTEKLKKKITVNKSTNKKKKKVLSSKDE 148
Score = 26.7 bits (59), Expect = 9.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+K K K K KKK K + K+ L
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVL 143
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 27.4 bits (61), Expect = 3.3
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKK--KKIRNKQK 36
QK S + ++K+ K KK+KK+KK+KK +K+ K+
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKS 135
Score = 26.6 bits (59), Expect = 6.3
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
++ K + K+ ++K+ K KK+KK+KK+KK+ K
Sbjct: 97 KEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEK 129
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF);
Provisional.
Length = 145
Score = 27.5 bits (61), Expect = 3.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 13 KKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYA 47
K K K K +K+ K + K++L+F++ YA
Sbjct: 2 PKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYA 36
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 26.6 bits (59), Expect = 3.3
Identities = 16/26 (61%), Positives = 17/26 (65%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKK 30
LK K KK +KKKKKKKKK K K
Sbjct: 8 GKLKLKGKKIDVKKKKKKKKKKNKSK 33
Score = 25.8 bits (57), Expect = 7.5
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KK KKK+KKKKKK K K++ + K++
Sbjct: 14 GKKIDVKKKKKKKKKKNKSKEEVVTEKEE 42
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 27.9 bits (62), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 4 PKSLKKKKKKKKKRKKKKKK 23
P K+KKKKK +KKK K
Sbjct: 85 PNQENKQKKKKKDKKKKSPK 104
Score = 26.7 bits (59), Expect = 6.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 2 QKPKSLKKKKKKKKKRKK 19
Q+ K KKKK KKKK K
Sbjct: 87 QENKQKKKKKDKKKKSPK 104
Score = 26.3 bits (58), Expect = 9.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 12 KKKKKRKKKKKKKKKKKKK 30
++ K+KKKKK KKKK K
Sbjct: 86 NQENKQKKKKKDKKKKSPK 104
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The
function is unclear.
Length = 151
Score = 27.6 bits (61), Expect = 3.4
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K +S K KKKK+K +KK K KKK++K
Sbjct: 17 SGKTQSQKSDKKKKEKVSEKKGKSKKKEEK 46
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 28.1 bits (63), Expect = 3.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KK KK K KK KK K K K
Sbjct: 258 KGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTK 291
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.1 bits (63), Expect = 3.5
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIR 32
S+++K KKKKK++KKK+++ K+++K R
Sbjct: 740 SVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.1 bits (63), Expect = 3.7
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKK 26
+ S +KKK++KK+++K+ K+ +
Sbjct: 174 VPGHSSDSEKKKQRKKQRRKRSKELR 199
Score = 27.3 bits (61), Expect = 6.0
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKK 30
+KKK++KK+++K+ K+ +
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELR 199
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 27.7 bits (62), Expect = 3.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
+ L + K+ K KKK KKK+K R
Sbjct: 11 QELAVQVAKQAKAKKKANKKKRKIYFKRA 39
>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 27.9 bits (62), Expect = 3.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANE 49
K K+KKKR K++ K + K+++ LVF NY E
Sbjct: 431 KNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYE 470
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 28.1 bits (62), Expect = 4.1
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKK-------KKKKKKKKIRNKQK 36
+ + +L K+ KK +R ++K +++K +KK+R ++K
Sbjct: 100 VNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRK 142
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 27.7 bits (62), Expect = 4.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ S +K+K KK KK KK+K+K
Sbjct: 218 PQSSSPSRKRKAPKKVAKKVAAAKKRKQK 246
Score = 27.0 bits (60), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
+K+K KK KK KK+K+K+
Sbjct: 222 SPSRKRKAPKKVAKKVAAAKKRKQKRSP 249
Score = 26.6 bits (59), Expect = 9.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNKQK 36
+KRK KK KK + KQK
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQK 246
Score = 26.6 bits (59), Expect = 9.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
S K+K KK +K KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRS 248
>gnl|CDD|239633 cd03578, NTR_netrin-4_like, NTR domain, Netrin-4-like subfamily;
composed of the C-terminal NTR domains of netrin-4 (beta
netrin) and similar proteins. Netrins are secreted
proteins that function as tropic cues in the direction
of axon growth and cell migration during neural
development. Netrin-4 is a basement membrane component
that is important in neural, kidney and vascular
development. It may also be involved in regulating the
outgrowth and shape of epithelial cells during lung
branching morphogenesis.
Length = 111
Score = 26.8 bits (59), Expect = 4.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 144 CKCPKIKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
C CP + YL+ G E + L +N KS V WK L ++ + +R
Sbjct: 61 CTCPILNPGLEYLVAGHEDV--RTGRLIVNMKSFVQHWKPSLGRKVMEILKRE 111
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 27.4 bits (61), Expect = 4.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 1 MQKPKSLKKKKK--KKKKRKKKKKKKKKKKKKIRNKQKLV 38
+ PK KKK+ +K KK KKK K+K ++K
Sbjct: 45 IPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPE 84
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 26.9 bits (60), Expect = 4.7
Identities = 10/31 (32%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 7 LKKKKKKKKKRKKKKKKKKK-KKKKIRNKQK 36
L+ ++++ K+R +K+K+ +K ++KK + +QK
Sbjct: 96 LRLRRERTKERAEKEKRTRKNREKKFKRRQK 126
Score = 26.9 bits (60), Expect = 5.2
Identities = 10/23 (43%), Positives = 20/23 (86%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKK 30
+K+K+ +K R+KK K+++K+K+K
Sbjct: 108 EKEKRTRKNREKKFKRRQKEKEK 130
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 27.4 bits (61), Expect = 4.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
QKP+ K+ + ++ KKK++ + KK + ++L
Sbjct: 71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEEL 107
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 27.2 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKK 24
+K K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|205156 pfam12945, YcgR_2, Flagellar protein YcgR. This domain is found N
terminal to pfam07238. Proteins which contain YcgR
domains are known to interact with the flagellar
switch-complex proteins FliG and FliM. This interaction
results in a reduction of torque generation and induces
CCW motor bias. This family contains members not
captured by pfam07317.
Length = 87
Score = 26.0 bits (58), Expect = 5.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 83 FGSGGWRFEFKSTIVGKISEKINL 106
G + FKS ++G+I + I L
Sbjct: 58 VSDDGAVYAFKSQVLGRIKDPIPL 81
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 26.7 bits (60), Expect = 5.2
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
K K KKKKKK+ + ++KKKK ++ + QK V L
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALL 122
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association
with pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 26.1 bits (58), Expect = 5.2
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 4/41 (9%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKK----KKKKKIRNKQKLV 38
+ + ++ ++KKKK+KK KKK K +KK+++R + K V
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEV 71
>gnl|CDD|227680 COG5391, COG5391, Phox homology (PX) domain protein [Intracellular
trafficking and secretion / General function prediction
only].
Length = 524
Score = 27.5 bits (61), Expect = 5.2
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIV 62
+ +K + K + ++ K+K +++ I K + L+++F+ + +
Sbjct: 437 RDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEEL----KNELKFFFSVRNSDL 492
Query: 63 GKI 65
KI
Sbjct: 493 EKI 495
>gnl|CDD|216470 pfam01385, OrfB_IS605, Probable transposase. This family includes
IS891, IS1136 and IS1341. DUF1225, pfam06774, has now
been merged into this family.
Length = 226
Score = 27.2 bits (61), Expect = 5.3
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 3 KPKSLKKKKKK--KKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
+ LK + K+ + + K K ++K K + +
Sbjct: 149 NGRPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRK 189
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 26.1 bits (58), Expect = 5.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+K + KK++K K R+ K +K++ K K R
Sbjct: 33 EKGIAEYKKQQKAKAREADKARKQQLKAKQRQAA 66
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 26.4 bits (59), Expect = 5.5
Identities = 5/21 (23%), Positives = 17/21 (80%)
Query: 5 KSLKKKKKKKKKRKKKKKKKK 25
++L+ ++ K++R++ +++KK
Sbjct: 103 EALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation
of 60S ribosomal subunits.
Length = 132
Score = 26.6 bits (59), Expect = 5.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
P + KK K K+K K +K +KK K+ +K +
Sbjct: 22 PILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKG 61
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 27.4 bits (61), Expect = 5.9
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+++K++KK+K KK K+ + ++ NK K
Sbjct: 64 EEEKEEKKKKTKKVKETTTEWELLNKTK 91
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 26.4 bits (59), Expect = 6.4
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+K K K+KK+++K+RK++ K++KKK K
Sbjct: 101 EKKKRSKEKKEEEKERKRQLKQQKKKAKH 129
Score = 26.1 bits (58), Expect = 8.6
Identities = 10/32 (31%), Positives = 26/32 (81%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ ++KKK+ K++K+++K++K++ K+ + K K
Sbjct: 97 RNKQEKKKRSKEKKEEEKERKRQLKQQKKKAK 128
Score = 26.1 bits (58), Expect = 9.0
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K KKK+ K+KK ++K++K++ K++K + K +
Sbjct: 99 KQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 26.1 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ K++KKKR K+KK+++K++K+ +QK
Sbjct: 93 LEHERNKQEKKKRSKEKKEEEKERKRQLKQQK 124
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 27.1 bits (61), Expect = 6.8
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 2 QKPKSLKKKKK--KKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
Q+ K LK + ++++KKK+KKK KKKK + + +++ L
Sbjct: 383 QELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVL 425
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 27.1 bits (61), Expect = 6.8
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
K L K + +K ++ +KKK I KL
Sbjct: 339 KVLLAAKARAAAKKARELTRKKKLSSISLPGKLA 372
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 25.6 bits (57), Expect = 6.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIR 32
K++++K KK+ KK + ++ KKK+
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 27.0 bits (60), Expect = 7.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
+ ++ K++K++ K+K KKK KK KK +
Sbjct: 3 NENGENEVKQQKQQNKQKGTKKKNKKSKKDV 33
Score = 27.0 bits (60), Expect = 8.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ S ++ + K+ KKKKKKKKKKKKK +
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKKNLGEAY 75
>gnl|CDD|152459 pfam12024, DUF3512, Domain of unknown function (DUF3512). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 231 to 249 amino acids in length. This domain
is found associated with pfam00439.
Length = 245
Score = 27.0 bits (60), Expect = 7.1
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 21 KKKKKKKKKKIRNKQKLVFEQLCINYANEHLQ 52
K KK +K+ K + + L + A E +
Sbjct: 1 KSKKPRKEIKKEFEPEGNDCSLTDSLAEEKVL 32
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 26.9 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKK-------KKKIRNKQKLVFEQ 41
S K KK K+ K K+K +KK KK++R KQK
Sbjct: 258 GSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRD 301
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional.
Length = 145
Score = 26.6 bits (59), Expect = 7.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIR 32
K KKK KK K KK K KK+K+R
Sbjct: 6 KAKKKAKKAAKAAKKGVKVKKRKVR 30
Score = 26.2 bits (58), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
P KKK KK + KK K KK+K + +
Sbjct: 2 APAKKAKKKAKKAAKAAKKGVKVKKRKVRTSVR 34
>gnl|CDD|149515 pfam08492, SRP72, SRP72 RNA-binding domain. This region has been
identified as the binding site of the SRP72 protein to
SRP RNA.
Length = 57
Score = 25.1 bits (55), Expect = 7.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
+ K KK KKK ++KKKK KKK+K +
Sbjct: 1 EAKKPKKIAKKKPGTEQKKKKSAKKKRKPK 30
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 26.9 bits (60), Expect = 7.3
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 4 PKSLKKKKKKKKKR--KKKKKKKKKKKKKIRNKQKLVFE 40
P+ K++KK R K +++ ++KKK + + + +
Sbjct: 44 PRPYSKREKKPYPRPMKLLRREAREKKKLRKLQPERPLD 82
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 27.0 bits (60), Expect = 7.4
Identities = 9/31 (29%), Positives = 26/31 (83%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
LKK K++++KR+++++K++KK+++ +++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
>gnl|CDD|112098 pfam03268, DUF267, Caenorhabditis protein of unknown function,
DUF267.
Length = 353
Score = 27.0 bits (60), Expect = 7.5
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)
Query: 20 KKKKKKKKKKKIRNKQKLVFEQL----CINYANEHLQYY 54
+K K K Q+ Q+ +N ANE LQ Y
Sbjct: 193 EKASKNKTLLNPGVLQRFCHRQIELLELVNEANESLQSY 231
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 26.9 bits (60), Expect = 7.5
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K LK K+ +++K K++ K + + +
Sbjct: 13 LKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSR 46
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 27.0 bits (60), Expect = 7.6
Identities = 11/36 (30%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIR-NKQKL 37
KP K+K K ++ ++K++K+ +++ K+ + K+KL
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKL 306
Score = 26.6 bits (59), Expect = 9.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
K+K K ++ K+K++K+ +++ K + K QL
Sbjct: 276 KRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQL 309
Score = 26.6 bits (59), Expect = 9.7
Identities = 11/36 (30%), Positives = 26/36 (72%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+K K+ + K+K++K+ +++ K++K+ KKK+ +L
Sbjct: 277 RKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARL 312
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 26.9 bits (60), Expect = 7.8
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+KK+KKK+K++++ K + KK+ R +KL
Sbjct: 626 IKKRKKKRKRKRRFLTKIEGVKKEKRKDKKL 656
>gnl|CDD|225816 COG3277, GAR1, RNA-binding protein involved in rRNA processing
[Translation, ribosomal structure and biogenesis].
Length = 98
Score = 25.8 bits (57), Expect = 7.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKK 30
+ K +KKRK +KK++ KK K
Sbjct: 75 IPPDKLIRKKRKLPRKKRRPKKPK 98
>gnl|CDD|222228 pfam13567, DUF4131, Domain of unknown function (DUF4131). This
domain is frequently found to the N-terminus of the
Competence domain, pfam03772.
Length = 173
Score = 26.6 bits (59), Expect = 8.1
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 75 GVVVSTVDFGSGGWRFEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKG 131
GVV ST + RF + + + + V + ++ KL+ G
Sbjct: 79 GVVASTPEVTGDRVRFVLEVERLLVGGDTKPVSGKVLVYV------RKDSLPKLRPG 129
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 26.1 bits (58), Expect = 8.1
Identities = 9/28 (32%), Positives = 23/28 (82%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
++K+++K+R+K++K++K++K+K K
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKG 41
>gnl|CDD|235222 PRK04125, PRK04125, murein hydrolase regulator LrgA; Provisional.
Length = 141
Score = 26.2 bits (58), Expect = 8.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNK 34
K +K+++ KK+KK K K + K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit
D; Validated.
Length = 419
Score = 26.7 bits (60), Expect = 8.4
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKI 31
L+K +K K++ K+ +K +
Sbjct: 54 LEKGEKPKQEPPPKEIEKDPGLPNV 78
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 27.0 bits (60), Expect = 8.7
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQ 57
QK + L ++ K+ KK + K I + L L + +++ +
Sbjct: 697 KQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDL-TDESDDVNDEKDME 752
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 26.7 bits (59), Expect = 8.9
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 11/46 (23%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK-----------KIRNKQK 36
++ K++ ++K+K KKK +K+K K+RNK+K
Sbjct: 341 DDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLKLRNKRK 386
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to
196 amino acids in length.
Length = 149
Score = 26.1 bits (58), Expect = 9.0
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+PK +KK K ++ K K K+KK +
Sbjct: 10 FEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAA 44
>gnl|CDD|201249 pfam00472, RF-1, RF-1 domain. This domain is found in peptide
chain release factors such as RF-1 and RF-2, and a
number of smaller proteins of unknown function. This
domain contains the peptidyl-tRNA hydrolase activity.
The domain contains a highly conserved motif GGQ, where
the glutamine is thought to coordinate the water that
mediates the hydrolysis.
Length = 114
Score = 25.6 bits (57), Expect = 9.1
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRN 33
L+KK++K K + + ++ +K+KIR
Sbjct: 76 LQKKREKTKPTRASQVRRGDRKEKIRT 102
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 26.7 bits (58), Expect = 9.3
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQY 53
KKKKKKK+K K K++ K ++++ +N ANE +
Sbjct: 106 PSKKKKKKKKKGWFWAKSKQESKTIETEEIIDVGASVNQANETRLF 151
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 25.8 bits (57), Expect = 9.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+ K K ++++ RK +K+ KK KK + Q
Sbjct: 97 EARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
>gnl|CDD|222658 pfam14296, O-ag_pol_Wzy, O-antigen polysaccharide polymerase Wzy.
This family includes O-antigen polysaccharide
polymerases. These enzymes link O-units via a glycosidic
linkage to form a long O-antigen. These enzymes vary in
specificity and sequence.
Length = 440
Score = 26.9 bits (60), Expect = 9.4
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
L +KKK+KK++KK + + ++ K +R ++F
Sbjct: 101 LGRKKKRKKEKKKNQLEYERLLKNLRKLSLILF 133
>gnl|CDD|215081 PLN00158, PLN00158, histone H2B; Provisional.
Length = 116
Score = 25.8 bits (56), Expect = 9.8
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
M K S K KK K KKK K K + KI
Sbjct: 1 MAKTPSKKPAKKAAKGAKKKGSKSKTETYKI 31
>gnl|CDD|218337 pfam04939, RRS1, Ribosome biogenesis regulatory protein (RRS1).
This family consists of several eukaryotic ribosome
biogenesis regulatory (RRS1) proteins. RRS1 is a nuclear
protein that is essential for the maturation of 25 S
rRNA and the 60 S ribosomal subunit assembly in
Saccharomyces cerevisiae.
Length = 164
Score = 26.1 bits (58), Expect = 9.9
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 13 KKKKRKKKKKKKKKKKKKIRNK 34
KK+R+KK++ K +K++++NK
Sbjct: 142 AKKRREKKERVAKNEKRELKNK 163
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,938,100
Number of extensions: 933582
Number of successful extensions: 12852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8577
Number of HSP's successfully gapped: 1419
Length of query: 198
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 106
Effective length of database: 6,857,034
Effective search space: 726845604
Effective search space used: 726845604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)