RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12860
(198 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 55.0 bits (133), Expect = 2e-09
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINY NE LQ +FN+
Sbjct: 464 FEQFCINYCNEKLQQFFNER 483
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 55.0 bits (133), Expect = 3e-09
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINYANE LQ FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 55.0 bits (133), Expect = 3e-09
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCIN+ NE LQ +FN H
Sbjct: 473 FEQLCINFTNEKLQQFFNHH 492
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 54.9 bits (133), Expect = 3e-09
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 54.5 bits (132), Expect = 4e-09
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQL IN+ NE LQ F +
Sbjct: 398 FEQLNINFCNEKLQQLFIEL 417
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 53.5 bits (129), Expect = 7e-09
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 472 FEQLCINYTNERLQQFFNHH 491
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 53.2 bits (128), Expect = 1e-08
Identities = 15/20 (75%), Positives = 15/20 (75%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQ CINYANE LQ FN H
Sbjct: 449 FEQFCINYANEKLQQQFNMH 468
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 52.7 bits (127), Expect = 1e-08
Identities = 14/20 (70%), Positives = 14/20 (70%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ FN
Sbjct: 445 FEQLCINYTNEKLQQLFNHT 464
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 52.7 bits (127), Expect = 2e-08
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 466 FEQLCINYTNEKLQQFFNHH 485
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 50.6 bits (121), Expect = 8e-08
Identities = 14/20 (70%), Positives = 14/20 (70%)
Query: 39 FEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ FN
Sbjct: 476 FEQLCINYTNEKLQQLFNHT 495
>1uap_A Procollagen C-proteinase enhancer protein; beta barrel, protein
binding; NMR {Homo sapiens} SCOP: b.40.3.3
Length = 154
Score = 46.3 bits (109), Expect = 6e-07
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 96 IVGKISEKIN-LKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKP 154
+ + + E + T+++ YK L + +CP +K
Sbjct: 51 VTATVKSMVREPGEGLAVTVSLIGAYKTG-GLDLPSPPTGASLKFYVPCKQCPPMKKGVS 109
Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGC 197
YL++G+ +E P + +S VV + + +R C
Sbjct: 110 YLLMGQVEENRGP---VLPPESFVVLHRPNQDQILTNLSKRKC 149
>3hrz_C Cobra venom factor; serine protease, glycosilated, multi-domain,
complement SYST convertase, complement alternate
pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB:
3frp_B* 3hs0_C*
Length = 379
Score = 44.9 bits (105), Expect = 5e-06
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 5/90 (5%)
Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPS 168
+ M++ + K+ D + + + +I + + +K+N YLI G +
Sbjct: 274 NDIYVMDVLEVIKQGTD-ENPRAKTHQYISQRKC-QEALNLKVNDDYLIWGSRSDLLPTK 331
Query: 169 G---LTMNAKSIVVEWKDELHDRMRQFQRR 195
+ + + W E + +FQ+
Sbjct: 332 DKISYIITKNTWIERWPHEDECQEEEFQKL 361
>3cki_B Metalloproteinase inhibitor 3; extra-cellular matrix, catalytic
zinc, SA-SB loop, alternative splicing, cleavage on PAIR
of basic residues; 2.30A {Homo sapiens}
Length = 121
Score = 37.0 bits (85), Expect = 8e-04
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 90 FEFKSTIVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKI 149
++ +VGK K + +T+ MY+ Y+ + C
Sbjct: 17 IVIRAKVVGKKLVKEGPFGTLVYTIKQMKMYR---GFTKMPHVQYIHTEASESLCGLKLE 73
Query: 150 KLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
YL+ G+ +G + + V W D++ QR+G
Sbjct: 74 VNKYQYLLTGRVYDGK----MYTGLCNFVERW-----DQLTLSQRKG 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.001
Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 60/170 (35%)
Query: 4 PKSLK------KKKKKKKKRKKKKKKKKKKKKKIRNK----------------QKLVFEQ 41
P+SL +K K + + ++K K N+ L+ +
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 42 LC---INYANEHLQY--Y--FNQH--RAIVGKISEKINTNLCGVVV---------ST--V 81
L +++ + +Q Y F+ R + G ISE+I + + V +T +
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 82 DFGSGGWRFEFKSTIVGKISEKINLKE--WVRF----TMNIQSM----YK 121
DFG GG ++ +G ++ + K+ VR T++I +K
Sbjct: 503 DFGPGG------ASGLGVLTHRN--KDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 38.1 bits (88), Expect = 0.001
Identities = 30/173 (17%), Positives = 55/173 (31%), Gaps = 66/173 (38%)
Query: 45 NYANEHLQYYFNQHRAIVGKISEKINTNLCGVVVSTVD----FGSGGWRFEFKSTIVGKI 100
+Y E L+ + + +VG + + L ++ +T+D F G
Sbjct: 168 DYFEE-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG-------------- 212
Query: 101 SEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCK--CPKIKL----NKP 154
+N+ EW+ PD YL L CP I + +
Sbjct: 213 ---LNILEWLENP-------SNTPDKD------YL------LSIPISCPLIGVIQLAH-- 248
Query: 155 YLILGKEKEGNQP-------SGLTMNAKSIVV--------EWKDELHDRMRQF 192
Y++ K G P G T +++ +V W + +R+
Sbjct: 249 YVVTAK-LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW-ESFFVSVRKA 299
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of
basic residues, complement alternate pathway,
glycoprotein, immune response; HET: NAG; 3.10A {Homo
sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A*
4a5w_A* 1xwe_A
Length = 1676
Score = 37.8 bits (86), Expect = 0.002
Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 20/106 (18%)
Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPS 168
+V++ + +YK K + C ++ + YLI+GKE + +
Sbjct: 1574 FVKYKATLLDIYKTGEAVAEKDSEITFIKKVT---CTNAELVKGRQYLIMGKEALQIKYN 1630
Query: 169 G-----LTMNAKSIVVEW------------KDELHDRMRQFQRRGC 197
+++ + + W L + GC
Sbjct: 1631 FSFRYIYPLDSLTWIEYWPRDTTCSSCQAFLANLDEFAEDIFLNGC 1676
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.015
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKK-KKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRA 60
Q+P+S++K +++++KR ++ K +++ R K K E+ +E ++ +R
Sbjct: 82 QEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ-SEQVEKNKINNRI 140
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 34.4 bits (78), Expect = 0.017
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
+ K KK K +++KKK+ K K K+ R KL ++L
Sbjct: 75 APKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 32.5 bits (73), Expect = 0.059
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
QK ++ K+ K KK + ++KKKK+ K K +Q++
Sbjct: 71 QKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMA 107
Score = 32.5 bits (73), Expect = 0.065
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
P+ K+ K+ K KK K ++KKKK+ + K
Sbjct: 67 PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 31.7 bits (71), Expect = 0.11
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q P+ ++KK+ K+ K KK K ++ + KQ
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 31.3 bits (70), Expect = 0.14
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+P +KK+ K+ K KK K ++KKKK K K
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTK 99
Score = 30.9 bits (69), Expect = 0.23
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAI 61
+ P KK+ K+ + KK K ++KKKK+ + +++ + + L N+ +
Sbjct: 66 RPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDV 125
Query: 62 VG 63
+G
Sbjct: 126 IG 127
Score = 30.9 bits (69), Expect = 0.23
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+P+ ++KK+ K+ K KK K ++KK + K
Sbjct: 63 PRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAK 97
Score = 30.2 bits (67), Expect = 0.38
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++KK+ ++ K KK K ++K + +
Sbjct: 61 QNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPA 96
Score = 30.2 bits (67), Expect = 0.40
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+P++ + + ++K++ K+ K KK K + K+K
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKK 92
Score = 30.2 bits (67), Expect = 0.42
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ ++KK+ K+ K KK K ++KKK + +
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT 98
Score = 29.8 bits (66), Expect = 0.48
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ + ++KK+ K+ K KK K + + K++
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQ 94
Score = 27.5 bits (60), Expect = 3.0
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
Q + + + ++KK+ K+ K KK + ++K
Sbjct: 56 QATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEK 90
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A
{Bos taurus}
Length = 1661
Score = 34.0 bits (76), Expect = 0.032
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 108 EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCP-KIKLNKPYLILGKEKEGNQ 166
++ + M I+++ K D K H K C+ K+K YL+ G +
Sbjct: 1555 DFDEYIMVIENIIKSGSDEVQVKQERKFISHIK---CREALKLKEGAHYLVWGVSSDLWG 1611
Query: 167 PSGL---TMNAKSIVVEWKDELHDRMRQFQRR 195
+ + V W + + + Q++
Sbjct: 1612 EKPKISYIIGKDTWVELWPEAEECQDEENQKQ 1643
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune
system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B*
2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B*
2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C*
3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Length = 915
Score = 33.5 bits (75), Expect = 0.039
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCP-KIKLNKPYLILGKEKE 163
+ + M I+ K D K C+ K++ K YL+ G +
Sbjct: 810 FDEYIMAIEQTIKSGSDEVQVGQQRTFISPIK---CREALKLEEKKHYLMWGLSSD 862
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 33.4 bits (76), Expect = 0.043
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
Q+P++ + K K+ +K I
Sbjct: 7 YQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 28.8 bits (64), Expect = 1.1
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
++ + + + + K K+ +K
Sbjct: 5 RRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
Score = 28.8 bits (64), Expect = 1.2
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
+ + + K K+ +K+ N ++
Sbjct: 11 QNRDISSRSNGKNPFKRSTGRKVSNVIIIIL 41
Score = 26.8 bits (59), Expect = 5.9
Identities = 3/39 (7%), Positives = 13/39 (33%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVF 39
M + ++ + + + K K+ + ++
Sbjct: 1 MASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIII 39
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 32.8 bits (73), Expect = 0.079
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 109 WVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCP-KIKLNKPYLILGKEKEGNQP 167
+ M++ + K+ D + K C+ +K+N YLI G +
Sbjct: 1537 NDIYVMDVLEVIKQGTDENPRAKTHQYISQRK---CQEALNLKVNDDYLIWGSRSDLLPT 1593
Query: 168 SGL---TMNAKSIVVEW 181
+ + + W
Sbjct: 1594 KDKISYIITKNTWIERW 1610
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 32.0 bits (73), Expect = 0.12
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYY 54
P + KK+KK+ + KKK + + N+ + + + A EH ++
Sbjct: 475 PIEQEPSKKQKKQHEGSKKKAAARDVTLENR----LQNMEVTDALEHHHHH 521
Score = 28.5 bits (64), Expect = 1.4
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQH 58
K +++ KK+KK+ + KKK + + +L + L+++ + H
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALEHHHHHH 522
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 31.0 bits (69), Expect = 0.15
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 1 MQKPKSLKKKKKKKKKR-KKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQ 52
Q+P+S++K +++++KR ++ K +++ R K K E+ +E ++
Sbjct: 96 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ-SEQVE 147
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 30.1 bits (67), Expect = 0.19
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ S K KK K +K K KKKK+K
Sbjct: 1 IPPKTSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 28.5 bits (63), Expect = 0.70
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
PK+ K KK K +K K KKKK+ R
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 28.1 bits (62), Expect = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
P K KK + +K K KKKK + K+
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 27.7 bits (61), Expect = 1.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKK 29
K+ KK K +K K KKKK+K+K
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 27.4 bits (60), Expect = 2.1
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K KK K +K K KK + K+K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 30.6 bits (70), Expect = 0.23
Identities = 3/31 (9%), Positives = 14/31 (45%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K++ + R + + +K+ + ++ +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.24
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 12/28 (42%)
Query: 102 EKINLKEWVRFTMNIQS---MYKRAPDS 126
EK LK+ +Q+ +Y A DS
Sbjct: 18 EKQALKK-------LQASLKLY--ADDS 36
Score = 27.2 bits (59), Expect = 2.7
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 8/26 (30%)
Query: 24 KKKKKKKIRNKQKLVFEQLCINYANE 49
+K+ KK++ KL YA++
Sbjct: 18 EKQALKKLQASLKL--------YADD 35
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 30.7 bits (69), Expect = 0.29
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ + KKKKKKKKK+ Q
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 26.8 bits (59), Expect = 6.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
K++ + + KKKK + K++ Q
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQ 112
>1zp7_A Recombination protein U; recombination,DNA-binding
protein,resolvase, DNA binding protein; 2.25A {Bacillus
subtilis} PDB: 1rzn_A
Length = 206
Score = 29.8 bits (67), Expect = 0.39
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 5/60 (8%)
Query: 12 KKKKKRKKKKKKKKKKKKKIRNKQK-LVFEQLCINYANEHLQYYFNQHRAIVGKISEKIN 70
K + K + +K+ + + E +N N+ YY A++ K +
Sbjct: 7 GKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDD-LNETNK---YYLTNQIAVIHKKPTPVQ 62
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 29.7 bits (66), Expect = 0.43
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
KK + +K RK K +++K +++ ++
Sbjct: 10 QKKLARDEKLRKAKAEQRKASSAQMKQRKAEWIS 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 0.46
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 74 CGVVVS--TVDFGSGGWR-FE 91
CG+V+S VD S WR F
Sbjct: 48 CGLVLSDKLVDTRS-EWRTFS 67
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_e
Length = 244
Score = 29.8 bits (66), Expect = 0.46
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHR 59
P+ + K+++++ +KK+K +K + V YA E+ +
Sbjct: 11 PEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQ 66
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 29.2 bits (66), Expect = 0.49
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
M KP ++ + +K +K K +
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSASARKIPKGV 31
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 29.8 bits (66), Expect = 0.52
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFE 40
LKK K ++K ++ ++ +K + K+ ++ E
Sbjct: 13 LKKSKAQQKTAEQVAAERAARKAANKEKRAIILE 46
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 29.0 bits (64), Expect = 0.57
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
M +P KK K+ K +KK KK+ ++++
Sbjct: 1 MPEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 27.4 bits (60), Expect = 1.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
P+ K KK KK K +KK K R K +
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSR 34
Score = 26.3 bits (57), Expect = 4.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
+ + KK KK + +KK KK+KK + +
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 28.5 bits (64), Expect = 0.58
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+++ + K+ +K++ KK K
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKG 108
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 29.0 bits (64), Expect = 0.59
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
Q KK K+ K + KK KKK K + K K+
Sbjct: 4 QPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKV 39
Score = 25.9 bits (56), Expect = 7.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
M K + +KK K+ K + KK KKK + K K
Sbjct: 1 MGKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 25.5 bits (55), Expect = 9.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
+K K K + KK KKK K K K K+ +
Sbjct: 10 KKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNH 41
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 28.4 bits (63), Expect = 0.61
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
PK K K KK KKK K K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRA 36
Score = 26.9 bits (59), Expect = 2.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
K + K K KK KKK KK ++++
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 25.0 bits (54), Expect = 9.1
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
Q K+ K +K KKK KK K ++
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQHAVIL 42
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics;
5.00A {Barmah forest virus}
Length = 253
Score = 29.6 bits (66), Expect = 0.64
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
P KK +K KK +KKK K K+ +
Sbjct: 69 TPPPKPKKTQKPKKPTQKKKSKPGKRMR 96
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 29.1 bits (64), Expect = 0.68
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+K+K ++ K+ ++++ + + +NKQ
Sbjct: 136 TQDVRKRKTREAAKRNRRRRPQARFTPQNKQD 167
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 29.3 bits (66), Expect = 0.74
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNK 34
K+++ ++K R+ K K+K +K+++ +
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.8 bits (62), Expect = 2.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
QK + ++K ++ K K+K +K++ +K+
Sbjct: 312 NQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.8 bits (62), Expect = 2.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+K+++ ++K ++ K K+K +K+ KQ
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 28.5 bits (63), Expect = 0.79
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ KP+ ++ +K + RK ++ K++ +
Sbjct: 3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRW 38
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 28.0 bits (62), Expect = 0.84
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
M K K + K+KKKK K + K+K+
Sbjct: 1 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKV 37
Score = 25.7 bits (56), Expect = 5.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
P S K K K+KKKK K K+K+K+ N
Sbjct: 8 APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNS 40
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 29.1 bits (65), Expect = 0.87
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGK 64
L+ + + K K + ++ K VF+Q + + Y N R ++ +
Sbjct: 113 AELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLV--PKQFDYLVNSMRVMMDR 170
Query: 65 I--SEKINTNLC 74
+ E++ LC
Sbjct: 171 VRTQERLIMKLC 182
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 28.6 bits (64), Expect = 0.92
Identities = 3/24 (12%), Positives = 5/24 (20%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKI 31
KK +K +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANEN 26
Score = 25.6 bits (56), Expect = 8.1
Identities = 3/25 (12%), Positives = 7/25 (28%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKK 25
M K+ +K+ +
Sbjct: 1 MAPKKTAPVQKEVISYGPPNVGANE 25
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 28.3 bits (63), Expect = 1.0
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
M K + K K K KK K K
Sbjct: 1 MNKENKTQAVNKAKNTAKVAKKGSSITKHKTY 32
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.0 bits (65), Expect = 1.2
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+LK K+ ++K + KK+
Sbjct: 626 TLKDTWGKQGGGTQQKAEGKKRPSTKGRGPD 656
Score = 27.5 bits (61), Expect = 3.7
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K+ +++ + KK+ K + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRG 660
Score = 27.1 bits (60), Expect = 5.0
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K+ ++K + KK+ K + + +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGE 661
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 28.5 bits (63), Expect = 1.2
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K +KK K + + KK ++ K+ +++
Sbjct: 252 AFKPTEKKFTKEQYAAESKKYRQTKLSKEER 282
Score = 27.0 bits (59), Expect = 4.8
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQ 41
++++ K KK K++ + K + KL E+
Sbjct: 245 EAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEE 281
Score = 26.2 bits (57), Expect = 7.4
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
P +KK K++ + KK ++ K
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTK 276
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 28.6 bits (63), Expect = 1.4
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K K K KK K +K K
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 28.3 bits (62), Expect = 1.5
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+ ++ K+ K K K KK K ++ L
Sbjct: 273 SDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKAL 307
Score = 28.3 bits (62), Expect = 1.6
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K K KK K +K K + +
Sbjct: 289 KDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 27.9 bits (61), Expect = 2.5
Identities = 8/32 (25%), Positives = 9/32 (28%), Gaps = 2/32 (6%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKK--KKI 31
KK K +K K K K I
Sbjct: 287 NTKDLKTGKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 26.7 bits (58), Expect = 5.4
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
K + K KK + +K K K
Sbjct: 285 KFNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 26.7 bits (58), Expect = 5.7
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 5/35 (14%)
Query: 2 QKPKSLKKKKKKKKKRKKKK-----KKKKKKKKKI 31
K + +K K K K K KK KI
Sbjct: 298 SKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGKI 332
Score = 26.3 bits (57), Expect = 7.3
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKK 30
+ K KK K +K K K
Sbjct: 284 TKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
Score = 26.3 bits (57), Expect = 8.1
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ + K K K KK K +K + K
Sbjct: 277 VEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDK 312
Score = 26.3 bits (57), Expect = 8.3
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
K K K+ K +K K+
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 28.7 bits (65), Expect = 1.4
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K L K KK K K K KK + K
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGS 478
Score = 28.4 bits (64), Expect = 1.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRN 33
K + KK K K + KK K K R+
Sbjct: 450 KNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKK 30
PK+ KK K K K KK K K
Sbjct: 449 PKNTTSVKKAKGKNPKNTTSVKKAKGK 475
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 28.5 bits (63), Expect = 1.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
+ P KK KK+ KK++ + K +KK R QK
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKK 284
Score = 27.7 bits (61), Expect = 2.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++++ +KK KK+ KKK+ + K+ QK
Sbjct: 245 AAIRENPVYEKKPKKEVKKKRWNRPKMSLAQK 276
>3ikw_A Heparin lyase I; polysaccharide lyase, beta-jelly roll; 1.30A
{Bacteroides thetaiotaomicron} PDB: 3ilr_A* 3imn_A
3in9_A* 3ina_A*
Length = 374
Score = 28.3 bits (62), Expect = 1.5
Identities = 10/57 (17%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 109 WVRFTMNIQ-SMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG 164
W+ F ++I ++Y + ++ +K G + + + ++ K K ++ +++G+ E
Sbjct: 290 WITFRVHIDWTVYGKEAETIVKPGMLDVRMDYQEQGKKVSKHIVDNEKILIGRNDED 346
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 27.9 bits (61), Expect = 2.0
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
KK++ + + K+ +KK K + ++KL++E+
Sbjct: 41 KKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKA 76
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 27.5 bits (62), Expect = 2.2
Identities = 4/28 (14%), Positives = 16/28 (57%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+++ + ++K ++K +++ +QK
Sbjct: 156 REELEALEKKYEEKTGLPSPERVEARQK 183
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 27.9 bits (62), Expect = 2.3
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKK 29
K K + K KKK K K K+ K
Sbjct: 352 AKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.9 bits (62), Expect = 2.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
S K+K+ + K KKK K K R K
Sbjct: 347 GSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 27.2 bits (60), Expect = 4.2
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K+K+ + K KKK K K K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFK 376
Score = 26.4 bits (58), Expect = 7.3
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K+K+ K KKK K ++
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKR 377
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 2.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKK 30
LK+KK +K+ ++ +KK+K K +
Sbjct: 153 ILKRKKFEKELKELQKKQKHKLEHH 177
Score = 26.3 bits (59), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 12 KKKKKRKKKKKKKKKKKKKIRNKQK 36
K+KK K+ K+ +KK+K K+ +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
Score = 25.9 bits (58), Expect = 6.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
K+KK +K+ K+ +KK+K K + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.5
Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 42/161 (26%)
Query: 45 NYANEHLQYYFNQH----RAIVGKISEKINTNL-CGVVVSTVDFGSGGWRFEFKSTIVGK 99
++ + H+ + +H + I+ + N C V D + +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ---DM----PKSILSKEEIDH 53
Query: 100 ISEKINLKEWVRFTMNI-----QSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKP 154
I + + M ++ + L+ Y ++ + IK
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSP--------IK---- 99
Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRR 195
E QPS +T + +E +D L++ + F +
Sbjct: 100 -------TEQRQPSMMT----RMYIEQRDRLYNDNQVFAKY 129
Score = 27.1 bits (59), Expect = 4.4
Identities = 25/186 (13%), Positives = 51/186 (27%), Gaps = 77/186 (41%)
Query: 17 RKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNLCGV 76
R + K ++ ++R + ++ + GV
Sbjct: 133 RLQPYLKLRQALLELRPAKNVL----------------------------------IDGV 158
Query: 77 VVSTVDFGSGGWRFEFKSTIVGKI--SEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVY 134
GSG K+ + + S K+ K M+ ++
Sbjct: 159 ------LGSG------KTWVALDVCLSYKVQCK------MD---------------FKIF 185
Query: 135 LWIHNKDLQCKCPK---IKLNKPYLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQ 191
W++ K C P+ L K + + S + N K + + EL ++
Sbjct: 186 -WLNLK--NCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 192 FQRRGC 197
C
Sbjct: 241 KPYENC 246
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 27.7 bits (61), Expect = 2.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKK 30
LKK+ KK K +K K + ++K
Sbjct: 112 GLKKRDKKNKSKKSKPAQGGEQKLI 136
Score = 26.5 bits (58), Expect = 6.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 10 KKKKKKKRKKKKKKKKKKKKKI 31
KK+ KK + KK K + ++K+
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKL 135
>2wry_A IL-1 beta, interleukin-1BETA; immune system, pyrogen, mitogen,
inflammatory response; 1.58A {Gallus gallus} PDB: 3nj5_A
Length = 162
Score = 27.2 bits (60), Expect = 2.6
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 105 NLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEG 164
+ + VR + + + + V L I L C +P L L +
Sbjct: 39 SSSQKVRLNIALYRPRGPRGSAGTGQMPVALGIKGYKLYMSCVMSG-TEPTLQLEEADVM 97
Query: 165 NQPSG 169
Sbjct: 98 RDIDS 102
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 27.9 bits (61), Expect = 2.7
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ +LK +K K KK + K +
Sbjct: 354 KRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAI 388
Score = 26.7 bits (58), Expect = 5.3
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
+ K++ K RK K KK + I K E +
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIA 389
Score = 26.3 bits (57), Expect = 8.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
++ KK + K K++ K +K K
Sbjct: 342 EQAKKAAEASKAKRQATLKANRKAAKTHK 370
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 26.8 bits (59), Expect = 3.1
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 4 PKSLKKKKKKKKKRKKKKKKK------KKKKKKIR 32
PK+ KK K ++ K K K+K KKIR
Sbjct: 3 PKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIR 37
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 27.3 bits (61), Expect = 3.3
Identities = 4/21 (19%), Positives = 12/21 (57%)
Query: 6 SLKKKKKKKKKRKKKKKKKKK 26
L+ ++K+ R++K ++
Sbjct: 178 VLQPPRRKEVPRRRKNHRRSG 198
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 27.2 bits (61), Expect = 3.5
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKK 29
+ L ++ + R + K K
Sbjct: 233 QKVGLIAARRTGRLRGQAAATAAKADK 259
>3ffd_P PTH-RP, PTHRP, parathyroid hormone-related protein; PTHRP complexed
to FAB, alternative splicing, calcium, cleavage on PAIR
of basic residues; 2.00A {Homo sapiens} PDB: 1bzg_A
Length = 108
Score = 26.3 bits (57), Expect = 3.7
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
K + LK KKKK + K+K+++KKK++ R
Sbjct: 79 KEQPLKTPGKKKKGKPGKRKEQEKKKRRTR 108
>2rde_A Uncharacterized protein VCA0042; C-DI-GMP, structural genomics, PSI
protein structure initiative, northeast structural
genomics consortium, NESG; HET: C2E; 1.92A {Vibrio
cholerae} SCOP: b.45.2.1 b.45.2.2 PDB: 1yln_A* 3kyg_A*
Length = 251
Score = 27.0 bits (59), Expect = 3.7
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 76 VVVSTVDFGSGGWRFEFKSTIVGKISEKINL 106
+ + + G F+S ++ + E + +
Sbjct: 90 MNIRAISPRGEGALIHFRSQLMHILQEPVPM 120
>1dzl_A Late major capsid protein L1; icosahedral; 3.50A {Human
papillomavirus type 16} SCOP: b.121.6.1
Length = 505
Score = 27.5 bits (61), Expect = 3.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKI 31
KPK K+K K+KK+K+
Sbjct: 476 AKPKFTLGKRKATPTTSSTSTTAKRKKRKL 505
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 27.4 bits (60), Expect = 3.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K KK K K+ KK K+ Q+
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQR 287
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 26.6 bits (58), Expect = 3.9
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
KP+ L +K + R+ + + KK++
Sbjct: 5 KPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAF 38
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 27.4 bits (60), Expect = 4.1
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
K K K KI+ KL
Sbjct: 11 KGADDDDKVPDPTSVDSVKYSKIKGIPKLD 40
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 27.1 bits (59), Expect = 4.4
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
++ + K +K+K K+ K ++ K++ K ++ +
Sbjct: 348 EAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMI 386
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 27.1 bits (59), Expect = 4.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K ++KK KK KK KK KK K+
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 26.4 bits (57), Expect = 7.2
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
+K +KK KK +K KK KK K
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
Score = 26.4 bits (57), Expect = 7.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ KK ++K+ KK KK KK + K+
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Score = 26.4 bits (57), Expect = 8.3
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ K++ KK KK KK KK + +K
Sbjct: 376 KGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEK 410
>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
single-stranded DNA, isomerase/DNA complex; HET: DNA;
2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
Length = 659
Score = 26.8 bits (60), Expect = 5.0
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKK 30
S KKK +KR KK +
Sbjct: 624 GSADKKKAAPRKRSAKKSPPADEVGS 649
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 26.7 bits (58), Expect = 5.0
Identities = 4/31 (12%), Positives = 15/31 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
+ ++L+ + + K ++ K+ + +R
Sbjct: 242 AQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 26.6 bits (59), Expect = 5.3
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
L+ +K ++KKKKK K + +
Sbjct: 363 ALLQSSASRKTQKKKKKKASKTAENATSGETL 394
Score = 26.6 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKK 30
K+L + +K +KKKKKK K +
Sbjct: 362 KALLQSSASRKTQKKKKKKASKTAEN 387
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA
processing, hydrolase, structural genomics, structural
consortium, SGC; 2.80A {Homo sapiens}
Length = 189
Score = 26.4 bits (59), Expect = 5.3
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 14 KKKRKKKKKKKKKK 27
K++ K K +K
Sbjct: 176 KQENPNAPKSKVRK 189
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 26.3 bits (59), Expect = 5.9
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 6 SLKKKKKKKKKRKKKKKKKKKKKKKIRNKQ 35
+ KKK + K + + K + +
Sbjct: 158 QVDKKKVRPKLNELIRDYKATHSLEHHHHH 187
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 161
Score = 26.2 bits (58), Expect = 6.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
L + K K +++ + + +IR K
Sbjct: 29 PLLPSFPIIEAKAKTRREDRTARHVRIRKK 58
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
{Streptococcus pyogenes serotype M6}
Length = 179
Score = 26.0 bits (58), Expect = 6.4
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 14 KKKRKKKKKKKKKKKKK 30
++ R++KK K K++
Sbjct: 158 RQGRERKKIAKHLIKEQ 174
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 25.9 bits (57), Expect = 6.5
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
+K + + + K+R+ K +K K +R K
Sbjct: 102 KKARRPTRPTRASKERRLASKAQKSSVKAMRGK 134
>3owq_A LIN1025 protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG, unknown FUN; 2.61A {Listeria innocua}
PDB: 3nro_A
Length = 321
Score = 26.6 bits (59), Expect = 6.6
Identities = 9/59 (15%), Positives = 20/59 (33%)
Query: 14 KKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTN 72
+ R + K+KK K+ + + Y+ + KI+ + T+
Sbjct: 2 TETRTETKQKKPSTFTKVMKIASVTLLGILFFSITGLAAKYYITVQNTFTKINVPLETS 60
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 26.8 bits (59), Expect = 6.9
Identities = 26/180 (14%), Positives = 50/180 (27%), Gaps = 41/180 (22%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISE 67
K KK K +K K + + + E + N +++H + H +
Sbjct: 261 GKTGKKHLKNSSYEKFKASPLYQAVSDIGISAEDVGENISSQHQIHPPVDHPS------- 313
Query: 68 KINTNLCGVVVSTVDFGSGGWRFEFKST----------IVGKISEKINLKEWVRFTMNIQ 117
+ V+ S ++ SG + +T ++S+ ++E VR
Sbjct: 314 ---SKPVEVIESILNANSGDLQVFTSNTKLAIDTVQKYYSLELSKNTKIREKVR-----S 365
Query: 118 SMYKRAP------DSKLKKGAVYLWIHN----KDLQCKCPKIKLNKPYLILGK---EKEG 164
K K+ K + P P + L E
Sbjct: 366 DFSKYYLADVVLTAKGKKEIQKG---SLYEDIKYAINRTPMHFRRDPDVFLKMVEAESLN 422
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 26.2 bits (57), Expect = 7.0
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQL 42
KS KK+ K+ KK +++K + + +
Sbjct: 253 MAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSA 292
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 26.2 bits (58), Expect = 7.0
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 15 KKRKKKKKKKKKKKKKIRN-KQKLVFEQLCINYANEHLQYY 54
+ K + K + Q ++ + E Q+
Sbjct: 262 QNLKDPVAVQTAKTNLLDELPQSVLKWAPSGSSCCEIAQFL 302
>1dvo_A FINO, fertility inhibition protein O; repressor, bacterial
conjugation, X-RAY crystallography, transcription;
2.00A {Escherichia coli} SCOP: a.136.1.1
Length = 152
Score = 25.8 bits (56), Expect = 7.9
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 3 KPKSLKKKKKKKKKRK-KKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAI 61
K K K+K +K R+ + KK + ++ + L +N F+
Sbjct: 3 KWKVKKQKLAEKAAREAELTAKKAQARQALSIYLNLPTLDEAVNTLKPWWPGLFDGDTPR 62
Query: 62 VGKI 65
+
Sbjct: 63 LLAC 66
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 25.4 bits (55), Expect = 8.0
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 1 MQKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
+ + ++ ++++K++ K K N++ V
Sbjct: 76 LVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQV 113
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 26.1 bits (57), Expect = 8.2
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 20 KKKKKKKKKKKIRN-KQKLVFEQLCINYANEHLQYY 54
K KK+K +KI K E LC Y E Y+
Sbjct: 217 KAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYF 252
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein,
bacterioferritin, hydrogen peroxide, metal binding
protein, archaea; 2.4A {Sulfolobus solfataricus}
Length = 188
Score = 25.7 bits (56), Expect = 8.7
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 13 KKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQY--YFNQHRAIVG 63
++K ++ K + +K + +KLV ++L A E Y Y + G
Sbjct: 2 QEKPQEPKVVGVEILEKSGLDIKKLV-DKLVKATAAEFTTYYYYTILRMHLTG 53
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 25.7 bits (56), Expect = 8.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
L +K++ K +++ +KKK +K KQKL+
Sbjct: 150 LTEKEQIVPKPEEEVAQKKKISQKKLKKQKLM 181
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 25.3 bits (55), Expect = 8.8
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 2 QKPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
++ + K ++ K K + + L+
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALI 37
>2r52_A BMP-6, bone morphogenetic protein 6; TGF-beta ligand,
chondrogenesis, cleavage on PAIR of basic residues,
cytokine, developmental protein; 2.50A {Homo sapiens}
Length = 143
Score = 25.4 bits (55), Expect = 9.0
Identities = 3/41 (7%), Positives = 15/41 (36%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLC 43
P S +++++ + + + + + + + C
Sbjct: 2 APTSASSRRRQQSRNRSTQSQDVARVSSASDYNSSELKTAC 42
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 26.0 bits (58), Expect = 9.4
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKK 30
L+ ++ R +K+K K
Sbjct: 238 LRAARRTGLVRGGQKEKMAMKAAA 261
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide
synthetase, tubulysin, ligase, phosphopantetheine,
biosynthetic protein; NMR {Angiococcus disciformis}
Length = 78
Score = 24.5 bits (53), Expect = 9.9
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 10/42 (23%)
Query: 126 SKLKKGAVYLWIHNKDLQCKCPK----------IKLNKPYLI 157
+ V LW+ + L+ + P + + LI
Sbjct: 12 AHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGARHELI 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,977,753
Number of extensions: 173659
Number of successful extensions: 4196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2812
Number of HSP's successfully gapped: 648
Length of query: 198
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 109
Effective length of database: 4,216,824
Effective search space: 459633816
Effective search space used: 459633816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)