RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12860
(198 letters)
>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 69.6 bits (170), Expect = 3e-16
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 96 IVGKISEKINLK-EWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKP 154
+ + + E + T+++ YK L + +CP +K
Sbjct: 28 VTATVKSMVREPGEGLAVTVSLIGAYKTGG-LDLPSPPTGASLKFYVPCKQCPPMKKGVS 86
Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRGC 197
YL++G+ +E G + +S VV + + +R C
Sbjct: 87 YLLMGQVEEN---RGPVLPPESFVVLHRPNQDQILTNLSKRKC 126
>d2j0td1 b.40.3.1 (D:1-124) TIMP-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 124
Score = 57.3 bits (138), Expect = 1e-11
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 97 VGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQC--KCPKIKLNKP 154
E + R+ + + MYK +++ + C ++
Sbjct: 23 FVGTPEVNQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEE 82
Query: 155 YLILGKEKEGNQPSGLTMNAKSIVVEWKDELHDRMRQFQRRG 196
+LI GK ++G L + S V W + QRRG
Sbjct: 83 FLIAGKLQDG----LLHITTCSFVAPWNS-----LSLAQRRG 115
>d1xwea_ b.40.3.3 (A:) Complement C5 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 151
Score = 43.7 bits (103), Expect = 2e-06
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 96 IVGKISEKINLKEWVRFTMNIQSMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPY 155
I+ +V++ + +YK +K + +I K + C ++ + Y
Sbjct: 36 YKVSITSITVENVFVKYKATLLDIYKTGEAVA-EKDSEITFI--KKVTCTNAELVKGRQY 92
Query: 156 LILGKEKE 163
LI+GKE
Sbjct: 93 LIMGKEAL 100
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 35.4 bits (81), Expect = 0.004
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 33 NKQKLVFEQLCINYANEHLQYYFNQHR 59
Q FEQL IN+ NE LQ F +
Sbjct: 384 VFQNNSFEQLNINFCNEKLQQLFIELT 410
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 33.6 bits (76), Expect = 0.012
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 31 IRNKQKLVFEQLCINYANEHLQYYFNQHR 59
+ FEQLCINY NE LQ FN
Sbjct: 390 FEIFEINSFEQLCINYTNEKLQQLFNHTM 418
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 32.0 bits (72), Expect = 0.049
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 32 RNKQKLVFEQLCINYANEHLQYYFNQHR 59
+ FEQLCINY NE LQ +FN H
Sbjct: 412 EIFKVNSFEQLCINYTNEKLQQFFNHHM 439
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 30.9 bits (69), Expect = 0.10
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 31 IRNKQKLVFEQLCINYANEHLQYYFNQHR 59
+ FEQ CINYANE LQ FN H
Sbjct: 379 FETFEINSFEQFCINYANEKLQQQFNMHV 407
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 29.7 bits (66), Expect = 0.22
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 33 NKQKLVFEQLCINYANEHLQYYFNQH 58
FEQLCIN+ NE LQ +FN H
Sbjct: 420 IFDFNSFEQLCINFTNEKLQQFFNHH 445
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 28.9 bits (64), Expect = 0.47
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 33 NKQKLVFEQLCINYANEHLQYYFNQH 58
FEQLCINY NE LQ +FN H
Sbjct: 418 IFDFNSFEQLCINYTNERLQQFFNHH 443
>d1l2ha_ b.42.1.2 (A:) Interleukin-1beta {Human (Homo sapiens)
[TaxId: 9606]}
Length = 149
Score = 27.1 bits (60), Expect = 0.83
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 118 SMYKRAPDSKLKKGAVYLWIHNKDLQCKCPKIKLNKPYLILGKEKEGNQPSG 169
SM + K V L + K+L C +KP L L N P
Sbjct: 40 SMSFVQGEESNDKIPVALGLKEKNLYLSCVLKD-DKPTLQLESVDPKNYPKK 90
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.9 bits (59), Expect = 1.8
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQKL 37
K+ +K++ ++K ++ K K+ K++L
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKERL 332
Score = 26.5 bits (58), Expect = 2.4
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKI 31
K+++ ++K R+ K K+K +K+++
Sbjct: 309 KRRETEEKMRRAKLAKEKAEKERL 332
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 26.9 bits (59), Expect = 1.8
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLV 38
K + +K++ K K++R +K+
Sbjct: 208 KDNAHNVTVDLEMRKQRNKTTKQVRTIEKIT 238
Score = 25.7 bits (56), Expect = 4.4
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
++ + +K+R K K+ + +K +
Sbjct: 210 NAHNVTVDLEMRKQRNKTTKQVRTIEKITPIE 241
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.6 bits (59), Expect = 2.0
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKKIRNK 34
+K++KK+ ++KK+ + +++K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 25.8 bits (57), Expect = 3.5
Identities = 5/24 (20%), Positives = 17/24 (70%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKKK 30
+ +K++KK+ ++KK+ + +++
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLERE 124
Score = 24.7 bits (54), Expect = 7.2
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNKQK 36
+ +K+++K+ ++KK+ + R K +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFE 127
>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1
{Chicken (Gallus gallus) [TaxId: 9031]}
Length = 66
Score = 24.9 bits (54), Expect = 2.4
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 3 KPKSLKKKKKKKKKRKKKKKKKKKK 27
+P +++K + + RK K KK++
Sbjct: 42 RPLTMRKDGIQTRNRKVSSKGKKRR 66
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.1 bits (55), Expect = 2.8
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 13 KKKKRKKKKKKKKKKKKKI 31
+K KKK +
Sbjct: 2 SSGSSGRKPPPKKKMTGTL 20
Score = 23.6 bits (51), Expect = 8.2
Identities = 5/18 (27%), Positives = 5/18 (27%)
Query: 11 KKKKKKRKKKKKKKKKKK 28
RK KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 25.6 bits (56), Expect = 3.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K K K K R++ K + + +K+++ K+
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKED 30
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 25.5 bits (55), Expect = 5.1
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 19 KKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQYYFNQHRAIVGKISEKINTNL 73
K KK K + F ++ N + + + EK+ L
Sbjct: 251 KTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVL 305
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 25.1 bits (55), Expect = 6.2
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKK 29
K + + +K+ K++K K K++
Sbjct: 109 FKAQTEARKQMSKEEKLKIKEEN 131
Score = 24.7 bits (54), Expect = 7.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 11 KKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + + RK+ K++K K K+ K
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLL 135
Score = 24.7 bits (54), Expect = 8.5
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 9 KKKKKKKKRKKKKKKKKKKKKKIRNKQK 36
K + + +K+ K++K K K++ + ++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 24.7 bits (54), Expect = 9.0
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNK 34
+ + +K+ K++K K K++ +K+ +
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 25.0 bits (54), Expect = 6.6
Identities = 2/45 (4%), Positives = 9/45 (20%)
Query: 8 KKKKKKKKKRKKKKKKKKKKKKKIRNKQKLVFEQLCINYANEHLQ 52
+ + + + + + + L H
Sbjct: 103 DEFHSELDRTLDVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTV 147
>d2joya1 b.34.5.7 (A:1-96) Ribosomal protein L14e {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 96
Score = 23.9 bits (52), Expect = 6.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 4 PKSLKKKKKKKKKRKKKKKKKKKKKKKIR 32
K ++ KKK + + K+K KIR
Sbjct: 64 QKGASDEEVKKKLEESNLTEYMKEKIKIR 92
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 24.7 bits (53), Expect = 7.2
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKK 26
K++ + R + + +K+
Sbjct: 160 PKPKREAFLEANRAELVRFQKE 181
Score = 24.7 bits (53), Expect = 7.5
Identities = 4/23 (17%), Positives = 11/23 (47%)
Query: 7 LKKKKKKKKKRKKKKKKKKKKKK 29
L K K++ + + + +K+
Sbjct: 159 LPKPKREAFLEANRAELVRFQKE 181
>d1kvva_ d.201.1.1 (A:) SRP19 {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 104
Score = 23.9 bits (52), Expect = 7.6
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 5 KSLKKKKKKKKKRKKKKKKKKKKKKK 30
L +K + +++K+++KK KKKKKK
Sbjct: 79 IELARKIAEIREQKREQKKDKKKKKK 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.396
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,813
Number of extensions: 38269
Number of successful extensions: 904
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 190
Length of query: 198
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 117
Effective length of database: 1,295,466
Effective search space: 151569522
Effective search space used: 151569522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.4 bits)