BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12861
(292 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ITQ|A Chain A, Human Renal Dipeptidase
pdb|1ITQ|B Chain B, Human Renal Dipeptidase
pdb|1ITU|A Chain A, Human Renal Dipeptidase Complexed With Cilastatin
pdb|1ITU|B Chain B, Human Renal Dipeptidase Complexed With Cilastatin
Length = 369
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 139/304 (45%), Gaps = 44/304 (14%)
Query: 1 HNDLPWNIRKFIHNHLVN--FNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYV 58
HNDLPW + +N L + NL++ + +HT++P+LR G VG QFWS Y
Sbjct: 20 HNDLPWQLLDMFNNRLQDERANLTT----------LAGTHTNIPKLRAGFVGGQFWSVYT 69
Query: 59 PCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFFVVCS--TAKGLED 116
PC +Q+ DAV+ T+EQ+DV+ R +Y + VTS+ G V S +G
Sbjct: 70 PCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHS 129
Query: 117 VSHYPDLLAAL----LDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNL- 171
+ +L AL + + T T + A N+L +E +S LSP RV L
Sbjct: 130 IDSSLGVLRALYQLGMRYLTLTHSCNTPWAD-NWLVDTGDSEPQSQGLSPFGQRVVKELN 188
Query: 172 ----LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVT 227
L + + A + P H A + + +V DD+
Sbjct: 189 RLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNV--------PDDV---- 236
Query: 228 SAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAG 287
+ L+ D +VMV+FY+ Y++C+ +++ V HLDHIK VAG VG G
Sbjct: 237 --------LRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGD 288
Query: 288 YDGI 291
+DG+
Sbjct: 289 FDGV 292
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 48 MVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFFVV 107
+V F++ Y+ C+++ + QV + D +K V A+ F V
Sbjct: 246 LVMVNFYNNYISCTNK------ANLSQV-------ADHLDHIKEVAGARAVGFGGDFDGV 292
Query: 108 CSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQES 157
+GLEDVS YPDL+A LL WTE +VK N LRV EQ S
Sbjct: 293 PRVPEGLEDVSKYPDLIAELLRR-NWTEAEVKGALADNLLRVFEAVEQAS 341
>pdb|3ID7|A Chain A, Crystal Structure Of Renal Dipeptidase From Streptomyces
Coelicolor A3(2)
pdb|3K5X|A Chain A, Crystal Structure Of Dipeptidase From Streptomics
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Ala-D-Asp At 1.4a Resolution.
pdb|3ITC|A Chain A, Crystal Structure Of Sco3058 With Bound Citrate And
Glycerol
pdb|3ISI|X Chain X, Crystal Structure Of Sco3058 With Bound Inhibitor
L-Ala-L-Asp Phosphinodipeptide
pdb|3S2J|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Leu-D-Ala
pdb|3S2L|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Leu-D-Glu
pdb|3S2M|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Phe-D-Asp
pdb|3S2N|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Tyr-D-Asp
Length = 400
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
HNDLPW +R+ + L ++++D +S+ HTDL RLR G VGAQ+WS YV
Sbjct: 20 HNDLPWALREQVRYDLDARDIAAD--------QSAHLHTDLARLRSGGVGAQYWSVYV-- 69
Query: 61 SSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSA 95
S AV T+EQ+D +RR + + +L+ +A
Sbjct: 70 RSDLPGAVTATLEQIDCVRRLIDRHPGELRAALTA 104
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 110 TAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLSPNATRVYS 169
T GL DVS YP+L+A LLD W+++ + KL N +RVL AE S L A R S
Sbjct: 327 TPDGLGDVSGYPNLIAELLDR-GWSQSDLAKLTWKNAVRVLDAAEDVSRGL--RAARGPS 383
Query: 170 N 170
N
Sbjct: 384 N 384
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 180 TGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSA 229
+G VGAQ+WS YV S AV T+EQ+D +RR + + +L+ +A
Sbjct: 57 SGGVGAQYWSVYV--RSDLPGAVTATLEQIDCVRRLIDRHPGELRAALTA 104
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 261 SSIDDVIAHLDHIKNVAGEDHVGLGAGYDG 290
+++ V HLDH++ VAG DH+G+G YDG
Sbjct: 294 ATVSTVADHLDHMREVAGVDHLGIGGDYDG 323
>pdb|3NEH|A Chain A, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
pdb|3NEH|B Chain B, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
Length = 318
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 233 DIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291
D + M +D ++ V FY L+ T + + +DVI H+DHI + G ++G G+ +DGI
Sbjct: 209 DEQIKAMIEHDAMIHVVFYPLFTTNNGVADTEDVIRHIDHICELGGLKNIGFGSDFDGI 267
>pdb|3LU2|A Chain A, Structure Of Lmo2462, A Listeria Monocytogenes
Amidohydrolase Family Putative Dipeptidase
pdb|3LU2|B Chain B, Structure Of Lmo2462, A Listeria Monocytogenes
Amidohydrolase Family Putative Dipeptidase
Length = 311
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 242 NDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291
+D + V F+ L+ T + I+DVI H+DHI + G ++G G+ +DGI
Sbjct: 219 HDAXIHVIFHPLFTTNDGVADIEDVIRHIDHICELGGXKNIGFGSDFDGI 268
>pdb|3FDG|A Chain A, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
pdb|3FDG|B Chain B, The Crystal Structure Of The Dipeptidase Ac, Metallo
Peptidase. Merops Family M19
Length = 355
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 47/293 (16%)
Query: 31 WSKSSWS-HTDLPRLRKGMVGAQFWSAYVPCSSQH--------MDAVQITMEQVDVIRR- 80
W K + H DLPR+++G F++ YVP H MDA + +IR
Sbjct: 29 WLKGDGTGHLDLPRMKEGGFAGGFFAIYVPSPQAHDAAHFEAMMDAPPFELPLPPMIRAE 88
Query: 81 -----FTELYSDDLKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTE 135
+ L + +A+G+ F VC TA E S + D + + + H E
Sbjct: 89 QAQPVALAMAGHLLWMERAARGR------FKVCRTAA--EVRSCHADGIVSGIMHMEGAE 140
Query: 136 TQVKKLAGLNFLRVLSKAEQESGRLSPNATR--VYSNLLSSFHLYATGMVGAQFWSA--- 190
L L+ L L P +R V+ + + F + G A
Sbjct: 141 AIGADLDALHLFHSLGLRS-----LGPVWSRPTVFGHGVP-FRFPGSPDTGEGLTEAGRR 194
Query: 191 -YVPCSSQH--MDAVQITMEQVDVIRRFTEL-----YSDDLKLVTSAQG-KDIGVTLMAL 241
C+ +D + + D + R ++ +S+ + S + D + ++
Sbjct: 195 LVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMIRE 254
Query: 242 NDGIVMVSFYSLYLTCSLNSSID----DVIAHLDHIKNVAGEDHVGLGAGYDG 290
+ G+V ++F + +L S + V+ HLDH+ + GEDHVG+G+ +DG
Sbjct: 255 SRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGMGSDFDG 307
>pdb|3LY0|A Chain A, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
pdb|3LY0|B Chain B, Crystal Structure Of Metallo Peptidase From Rhodobacter
Sphaeroides Liganded With Phosphinate Mimic Of Dipeptide
L- Ala-D-Ala
Length = 364
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 47/293 (16%)
Query: 31 WSKSSWS-HTDLPRLRKGMVGAQFWSAYVPCSSQH--------MDAVQITMEQVDVIRR- 80
W K + H DLPR+++G F++ YVP H MDA + +IR
Sbjct: 31 WLKGDGTGHLDLPRMKEGGFAGGFFAIYVPSPQAHDAAHFEAMMDAPPFELPLPPMIRAE 90
Query: 81 -----FTELYSDDLKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTE 135
+ L + +A+G+ F VC TA E S + D + + + H E
Sbjct: 91 QAQPVALAMAGHLLWMERAARGR------FKVCRTAA--EVRSCHADGIVSGIMHMEGAE 142
Query: 136 TQVKKLAGLNFLRVLSKAEQESGRLSPNATR--VYSNLLSSFHLYATGMVGAQFWSA--- 190
L L+ L L P +R V+ + + F + G A
Sbjct: 143 AIGADLDALHLFHSLGLRS-----LGPVWSRPTVFGHGVP-FRFPGSPDTGEGLTEAGRR 196
Query: 191 -YVPCSSQH--MDAVQITMEQVDVIRRFTEL-----YSDDLKLVTSAQG-KDIGVTLMAL 241
C+ +D + + D + R ++ +S+ + S + D + ++
Sbjct: 197 LVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATHSNAHAVTPSTRNLTDRQLAMIRE 256
Query: 242 NDGIVMVSFYSLYLTCSLNSSID----DVIAHLDHIKNVAGEDHVGLGAGYDG 290
+ G+V ++F + +L S + V+ HLDH+ + GEDHVG+G+ +DG
Sbjct: 257 SRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGMGSDFDG 309
>pdb|2I5G|A Chain A, Crystal Strcuture Of Amidohydrolase From Pseudomonas
Aeruginosa
pdb|2I5G|B Chain B, Crystal Strcuture Of Amidohydrolase From Pseudomonas
Aeruginosa
Length = 325
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 236 VTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGY 288
+ +A + G V V+ ++ +L ++S+IDD ++++ N+ GED +G+G +
Sbjct: 198 LKFIADHGGFVGVTXFAPFLKKGIDSTIDDYAEAIEYVXNIVGEDAIGIGTDF 250
>pdb|1JCZ|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Carbonic Anhydrase Xii
pdb|1JCZ|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Carbonic Anhydrase Xii
pdb|1JD0|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Carbonic Anhydrase Xii Complexed With Acetazolamide
pdb|1JD0|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Carbonic Anhydrase Xii Complexed With Acetazolamide
Length = 263
Score = 30.8 bits (68), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 160 LSPNATRVYSNLLSSFHL------YATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIR 213
L+ N V NL S H+ Y+ + + + P S+H + Q ++ ++
Sbjct: 61 LTNNGHSVKLNLPSDMHIQGLQSRYSATQLHLHWGNPNDPHGSEHTVSGQHFAAELHIVH 120
Query: 214 RFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHI 273
++LY D ++A K G+ ++A+ I M SF N S D + +HL H+
Sbjct: 121 YNSDLYPD----ASTASNKSEGLAVLAV--LIEMGSF---------NPSYDKIFSHLQHV 165
Query: 274 KNVAGEDHV 282
K E V
Sbjct: 166 KYKGQEAFV 174
>pdb|2J1R|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module
pdb|2J1R|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module
pdb|2J1S|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With Fucose
pdb|2J1S|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With Fucose
pdb|2J1T|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Lewis Y Antigen
pdb|2J1T|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Lewis Y Antigen
pdb|2J1U|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group A-Tetrasaccharide
pdb|2J1U|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group A-Tetrasaccharide
pdb|2J1V|A Chain A, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group H-Trisaccharide
pdb|2J1V|B Chain B, Structure Of A Streptococcus Pneumoniae Fucose Binding
Module In Complex With The Blood Group H-Trisaccharide
Length = 151
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 129 DHPTWTETQVKKLAGLNFLRVLSKAEQESGRLS 161
D+P+W E +KK+ + +++ ++ + E+ RLS
Sbjct: 58 DNPSWWEVDLKKMDKVGLVKIYNRTDAETQRLS 90
>pdb|3ZRX|A Chain A, The High Resolution Structure Of A Dimeric Hamp-Dhp Fusion
Displays Strong Asymmetry
pdb|3ZRX|B Chain B, The High Resolution Structure Of A Dimeric Hamp-Dhp Fusion
Displays Strong Asymmetry
Length = 115
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 165 TRVYSNLLSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLK 224
TR L ++F A G + A+ VP ++ D + I + ++ +RR + +DD
Sbjct: 8 TRPIIELSNTFDKIAEGNLEAE-----VPHQNR-ADEIGILAKSIERLRRSLKQLADDRT 61
Query: 225 LVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDH 272
L+ + D+ L + M+S YL S+N I++ A ++
Sbjct: 62 LLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQ 109
>pdb|3ZRV|A Chain A, The High Resolution Structure Of A Dimeric Hamp-Dhp Fusion
Displays Asymmetry - A291f Mutant
pdb|3ZRV|B Chain B, The High Resolution Structure Of A Dimeric Hamp-Dhp Fusion
Displays Asymmetry - A291f Mutant
Length = 116
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 165 TRVYSNLLSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLK 224
TR L ++F A G + A+ VP ++ D + I + ++ +RR + +DD
Sbjct: 8 TRPIIELSNTFDKIAEGNLEAE-----VPHQNR-ADEIGILAKSIERLRRSLKQLADDRT 61
Query: 225 LVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDH 272
L+ + D+ L + M+S YL S+N I++ A ++
Sbjct: 62 LLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQ 109
>pdb|2LFS|A Chain A, Solution Structure Of The Chimeric Af1503 Hamp- Envz Dhp
Homodimer; A219f Variant
pdb|2LFS|B Chain B, Solution Structure Of The Chimeric Af1503 Hamp- Envz Dhp
Homodimer; A219f Variant
Length = 114
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 165 TRVYSNLLSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLK 224
TR L ++F A G + A+ VP ++ D + I + ++ +RR + +DD
Sbjct: 7 TRPIIELSNTFDKIAEGNLEAE-----VPHQNR-ADEIGILAKSIERLRRSLKQLADDRT 60
Query: 225 LVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDH 272
L+ + D+ L + M+S YL S+N I++ A ++
Sbjct: 61 LLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQ 108
>pdb|3ZRW|B Chain B, The Structure Of The Dimeric Hamp-Dhp Fusion A291v Mutant
Length = 116
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 188 WSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVM 247
A VP ++ D + I + ++ +RR + +DD L+ + D+ L + M
Sbjct: 26 LEAEVPHQNR-ADEIGILAKSIERLRRSLKQQADDRTLLMAGVSHDLRTPLTRIRLATEM 84
Query: 248 VSFYSLYLTCSLNSSIDDVIAHLDH 272
+S YL S+N I++ A ++
Sbjct: 85 MSEQDGYLAESINKDIEECNAIIEQ 109
>pdb|3ZRW|A Chain A, The Structure Of The Dimeric Hamp-Dhp Fusion A291v Mutant
pdb|3ZRW|C Chain C, The Structure Of The Dimeric Hamp-Dhp Fusion A291v Mutant
pdb|3ZRW|D Chain D, The Structure Of The Dimeric Hamp-Dhp Fusion A291v Mutant
Length = 116
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 188 WSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVM 247
A VP ++ D + I + ++ +RR + +DD L+ + D+ L + M
Sbjct: 26 LEAEVPHQNR-ADEIGILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEM 84
Query: 248 VSFYSLYLTCSLNSSIDDVIAHLDH 272
+S YL S+N I++ A ++
Sbjct: 85 MSEQDGYLAESINKDIEECNAIIEQ 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,451,552
Number of Sequences: 62578
Number of extensions: 322357
Number of successful extensions: 902
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 25
length of query: 292
length of database: 14,973,337
effective HSP length: 98
effective length of query: 194
effective length of database: 8,840,693
effective search space: 1715094442
effective search space used: 1715094442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)