Query psy12861
Match_columns 292
No_of_seqs 148 out of 1345
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:40:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4127|consensus 100.0 1.8E-58 4E-63 433.0 16.5 240 1-292 72-347 (419)
2 PF01244 Peptidase_M19: Membra 100.0 7.6E-56 1.6E-60 419.5 11.6 233 1-292 12-277 (320)
3 cd01301 rDP_like renal dipepti 100.0 6.9E-54 1.5E-58 404.4 15.1 240 1-291 6-268 (309)
4 COG2355 Zn-dependent dipeptida 100.0 2.8E-47 6.1E-52 357.2 12.5 213 42-292 32-266 (313)
5 KOG4127|consensus 98.7 1.5E-08 3.2E-13 96.9 5.6 113 172-286 102-257 (419)
6 cd01301 rDP_like renal dipepti 97.5 0.00014 3E-09 69.3 6.0 102 172-285 29-133 (309)
7 PF01244 Peptidase_M19: Membra 96.8 0.00092 2E-08 63.9 3.2 75 172-248 36-110 (320)
8 COG0163 UbiX 3-polyprenyl-4-hy 68.5 9.3 0.0002 34.2 4.7 42 236-281 137-180 (191)
9 COG2355 Zn-dependent dipeptida 66.2 9.9 0.00021 36.6 4.8 95 47-153 216-310 (313)
10 KOG3968|consensus 44.1 33 0.00072 34.4 4.4 48 236-292 287-334 (439)
11 COG3618 Predicted metal-depend 35.1 1.3E+02 0.0028 28.6 6.7 55 233-289 183-238 (279)
12 cd01311 PDC_hydrolase 2-pyrone 27.3 3.7E+02 0.0081 24.3 8.4 54 233-290 169-223 (263)
13 PF06057 VirJ: Bacterial virul 27.2 51 0.0011 29.6 2.5 49 236-284 22-72 (192)
14 PRK07203 putative chlorohydrol 26.9 60 0.0013 32.0 3.2 44 236-288 270-313 (442)
15 PRK07094 biotin synthase; Prov 22.0 1.5E+02 0.0032 27.8 4.7 54 228-286 163-216 (323)
16 COG1608 Predicted archaeal kin 20.7 82 0.0018 29.4 2.6 28 261-291 147-174 (252)
17 PRK06029 3-octaprenyl-4-hydrox 20.5 2.1E+02 0.0045 25.3 5.1 45 234-281 133-178 (185)
No 1
>KOG4127|consensus
Probab=100.00 E-value=1.8e-58 Score=432.98 Aligned_cols=240 Identities=42% Similarity=0.749 Sum_probs=218.2
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCC--CChhHHHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCS--SQHMDAVQITMEQVDVI 78 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~--~~~~~~~~~~~~~~~~~ 78 (292)
||||||++|++++|.|+... -+|+...++|+|++|||+|.|++|||++|+||. .++.++++.+++|||.+
T Consensus 72 hndlp~~lR~~~~n~Lq~~~--------~~~~~~~~~~Tdl~rlRqg~Vg~qfWs~~vpC~~~~q~~dAVrltLEqID~v 143 (419)
T KOG4127|consen 72 HNDLPWQLRKLLKNRLQDIE--------ANLENPSWGQTDLFRLRQGLVGAQFWSAYVPCQSQDQYLDAVRLTLEQIDVV 143 (419)
T ss_pred CCchHHHHHHHHHHHHHhhh--------ccccCCCCCcccHHHHhcCccceEEEEEEeecCCccchhHHHHHHHHHHHHH
Confidence 99999999999999987753 246667899999999999999999999999998 56679999999999999
Q ss_pred HHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhc--C---CCchhhhhh-h
Q psy12861 79 RRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLD--H---PTWTETQVK-K 140 (292)
Q Consensus 79 ~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~--~---~~~~~~~~~-~ 140 (292)
+|++..||+.+.+++++++ +++++. |++++ +|+|| |+.||.||+||++ | .+|+++... .
T Consensus 144 rRm~~~y~~~~~~vtsa~~--~~q~~~~gkiA~L-iGVeGgH~i~sSlsVLR~fY~LG~RyltLTh~C~tpwA~a~~~~~ 220 (419)
T KOG4127|consen 144 RRMCAMYPETFLLVTSADG--IEQTHRRGKIASL-IGVEGGHSIDTSLSVLRSFYSLGVRYLTLTHTCDTPWADAAIVDY 220 (419)
T ss_pred HHHHHhcccceeeeechhh--HHHHHHhccceee-ecccccccccccHHHHHHHHHhhhhheeeeeccCCCchhhhhhcc
Confidence 9999999999999999999 999997 99999 99999 9999999999965 4 567766332 2
Q ss_pred hhcchhhhhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee----------eeeccccCCCCChhHHHH
Q psy12861 141 LAGLNFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------FWSAYVPCSSQHMDAVQI 204 (292)
Q Consensus 141 g~~~N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ss~~~~~~~~~~~av~~ 204 (292)
+. .+...+|||+|||++|+|| ||+||.|++++.||+ ||++|..|+++|
T Consensus 221 ~~----------~~~~~~gLs~FG~~vV~EMNRLGMmVDLShvS~atm~~aL~vS~APVIFSHSsA~~vcns~r------ 284 (419)
T KOG4127|consen 221 HD----------GENNIGGLSPFGQKVVFEMNRLGMMVDLSHVSDATMRDALEVSRAPVIFSHSSAYSVCNSSR------ 284 (419)
T ss_pred cC----------cCcccCCccHHHHHHHHHHhhhhheeehhhcCHHHHHHHHHhhcCceEeecccHHHHhcCcc------
Confidence 21 2346799999999999999 999999999999998 778888888887
Q ss_pred HHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceee
Q psy12861 205 TMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGL 284 (292)
Q Consensus 205 t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgi 284 (292)
|.||++ ++.++++||||+|||++.|++|..+++++++++||+||++++|+|||||
T Consensus 285 -------------NVPDdV------------L~llk~NgGvVMVnfy~~~isc~~~A~v~~v~~Hi~hIr~VaG~~hIGl 339 (419)
T KOG4127|consen 285 -------------NVPDDV------------LQLLKENGGVVMVNFYPGFISCSDRATVSDVADHINHIRAVAGIDHIGL 339 (419)
T ss_pred -------------CCcHHH------------HHHHhhcCCEEEEEeecccccCCCcccHHHHHHHHHHHHHhhccceeec
Confidence 999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q psy12861 285 GAGYDGIN 292 (292)
Q Consensus 285 GsDfDG~~ 292 (292)
|.||||++
T Consensus 340 Gg~yDGi~ 347 (419)
T KOG4127|consen 340 GGDYDGIP 347 (419)
T ss_pred cCCcCCcC
Confidence 99999985
No 2
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=100.00 E-value=7.6e-56 Score=419.49 Aligned_cols=233 Identities=29% Similarity=0.487 Sum_probs=194.7
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCCChhHHHHHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRR 80 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 80 (292)
|+|+||+++..- .+.. .......++++|+|++|++++|||++|+|+...+..+++.++++++.+++
T Consensus 12 H~D~~~~~~~~~------~~~~--------~~~~~~~~~~l~~l~~ggv~~~~~ai~~~~~~~~~~~~~~~~~~i~~~~~ 77 (320)
T PF01244_consen 12 HCDTPYDLRDRG------RDGD--------ILRDNRGHVDLPRLREGGVRAQFFAIFVPPDFEGDEAFERALEQIDLFRR 77 (320)
T ss_dssp EE-HHHHHHHHT------TTTT--------TTTCTTSSSCHHHHHHHTEEEEEEEEE--TTSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhc------cccc--------ccCCCcccccHHHHHhcCCCEEEEEEEeccccccchHHHHHHHHHHHHHH
Confidence 899999998752 2211 11456789999999999999999999999977778999999999999999
Q ss_pred HHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchhh-hhhhhhcchhh
Q psy12861 81 FTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTET-QVKKLAGLNFL 147 (292)
Q Consensus 81 ~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~N~l 147 (292)
+++++|+.+++|++++| ++++++ |++++ +++|| |+.||++|||+++ +|||.. .+++||
T Consensus 78 ~~~~~~~~~~~v~~~~d--i~~~~~~gk~avi-l~iEg~~~l~~~l~~l~~~y~lGvR~~~-Lt~n~~N~~a~g~----- 148 (320)
T PF01244_consen 78 LIEAHPDRLRIVRSAAD--IERAKKEGKIAVI-LGIEGAHALGGDLERLDEFYDLGVRYIG-LTWNYRNELADGC----- 148 (320)
T ss_dssp HHHHCTTTEEE-SSHHH--HHHHHHTT-EEEE-EEEESCGGGTTTHHHHHHHHHTTEEEEE-S-SSSBBSSBBBT-----
T ss_pred HHHhCCcceeecCCHHH--HHHHHhcCCEEEE-EEeeccccccCCHHHHHHHHHcCCEEEE-EeecCCCcccccc-----
Confidence 99999999999999999 999987 99999 99999 9999999999999 899998 999998
Q ss_pred hhhhcccc--cCCCCCchhhhhhhcc------cccccCCccccceee----------eeeccccCCCCChhHHHHHHHHH
Q psy12861 148 RVLSKAEQ--ESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------FWSAYVPCSSQHMDAVQITMEQV 209 (292)
Q Consensus 148 r~~~~~e~--~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ss~~~~~~~~~~~av~~t~~q~ 209 (292)
.++ .++|||+|||++|+|| ||+||+|+++++|++ ||+++.+|+|+|
T Consensus 149 -----~~~~~~~~GLT~~G~~vV~~mn~lGm~vDvSH~s~~t~~Dv~~~s~~PviaSHSn~ral~~h~R----------- 212 (320)
T PF01244_consen 149 -----GEPGNRDGGLTPFGREVVREMNRLGMLVDVSHLSEKTFWDVLEISKKPVIASHSNARALCPHPR----------- 212 (320)
T ss_dssp -----TSTTTTSSSB-HHHHHHHHHHHHHT-EEE-TTB-HHHHHHHHHH-SSEEEECCEEBTTTS--TT-----------
T ss_pred -----ccccccCCCcChHHHHHHHHHHHcCCeeeeccCCHHHHHHHHhhcCCCEEEeccChHhhCCCCC-----------
Confidence 344 6899999999999999 999999999999998 555666665555
Q ss_pred HHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCC--CCCCHHHHHHHHHHHHHHhCCCceeecCC
Q psy12861 210 DVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCS--LNSSIDDVIAHLDHIKNVAGEDHVGLGAG 287 (292)
Q Consensus 210 d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~--~~~~l~~~~~Hi~~i~~l~G~dHVgiGsD 287 (292)
|+||++ ||+|+++|||||||++|.|++++ +.++++++++||+|+++++|+||||||||
T Consensus 213 --------NltDe~------------iraia~~GGviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGsD 272 (320)
T PF01244_consen 213 --------NLTDEQ------------IRAIAERGGVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGSD 272 (320)
T ss_dssp --------SB-HHH------------HHHHHHTT-EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE--
T ss_pred --------CCCHHH------------HHHHHHCCcEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECcc
Confidence 999999 99999999999999999999986 78999999999999999999999999999
Q ss_pred CCCCC
Q psy12861 288 YDGIN 292 (292)
Q Consensus 288 fDG~~ 292 (292)
|||+.
T Consensus 273 fdg~~ 277 (320)
T PF01244_consen 273 FDGID 277 (320)
T ss_dssp BTTTS
T ss_pred cCCCC
Confidence 99974
No 3
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=100.00 E-value=6.9e-54 Score=404.37 Aligned_cols=240 Identities=29% Similarity=0.469 Sum_probs=213.7
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCCC---hhHHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQ---HMDAVQITMEQVDV 77 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~~---~~~~~~~~~~~~~~ 77 (292)
|+|+||.++... .+. ...+..+|+|+||||+|++++||||+|+++... +..+++.+++|++.
T Consensus 6 H~D~~~~~~~~~------~~~---------~~~~~~~~~d~~~l~~g~v~~~~~ai~~~~~~~~~~~~~~~~~~~~~i~~ 70 (309)
T cd01301 6 HNDLLYRLRREG------KDF---------FTKDAGGHVDLPRLREGGVGGQVFAIFVPPGELQPTWLDALERALEQIDR 70 (309)
T ss_pred eccHHHHHHHhc------ccc---------cccCCCCcCcHHHHHhcCCCEEEEEEEeCCcccCccchHHHHHHHHHHHH
Confidence 999999997632 111 013346899999999999999999999988653 45789999999999
Q ss_pred HHHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchhh-hhhhhhcc
Q psy12861 78 IRRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTET-QVKKLAGL 144 (292)
Q Consensus 78 ~~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~ 144 (292)
++++++++|+.+.++++++| ++++++ |++++ +++|| |+.||++|||+|+ +|||.. .+++||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~d--~~~~~~~gkia~~-l~iEg~~~l~~~~~~l~~~~~lGvR~i~-Lt~n~~N~~a~g~-- 144 (309)
T cd01301 71 VRRLIAAYPRIFVLATSSAD--IRRALKEGKLAAI-ISIEGAHALGGDLALLRLLYRLGVRYLG-LTWNGDNKFADGC-- 144 (309)
T ss_pred HHHHHHHCCCCEEEECCHHH--HHHHHhCCCeEEE-EEEeccccccCCHHHHHHHHHcCCeEEE-eeecCCCccccCC--
Confidence 99999999999999999999 999888 99999 99999 9999999999999 899998 999987
Q ss_pred hhhhhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee-eeeccccCCCCChhHHHHHHHHHHHHHHHHh
Q psy12861 145 NFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ-FWSAYVPCSSQHMDAVQITMEQVDVIRRFTE 217 (292)
Q Consensus 145 N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~-~ss~~~~~~~~~~~av~~t~~q~d~v~~~~r 217 (292)
.++.++|||+|||++|++| ||+||+|+++++|++ .+..|+..+|+++++ +..++|
T Consensus 145 --------~~~~~~GLt~~G~~vv~~mn~lGmiiDvSH~s~~~~~dv~~~s~~PviaSHsn~ra----------l~~h~R 206 (309)
T cd01301 145 --------GEKRGGGLTPFGKELVREMNRLGIIIDLSHLSERTFWDVLDISNAPVIASHSNARA----------LCDHPR 206 (309)
T ss_pred --------CCCCCCCCCHHHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHhcCCCEEEeccChHH----------hcCCCC
Confidence 4457899999999999999 999999999999998 566777777777543 456777
Q ss_pred cCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q psy12861 218 LYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291 (292)
Q Consensus 218 n~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~ 291 (292)
|++|++ ||+|+++|||||+||+|.|+.+.+.++++++++||+|+++++|+|||||||||||+
T Consensus 207 NltD~~------------i~~ia~~GGvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGsDfdg~ 268 (309)
T cd01301 207 NLTDAQ------------LKAIAETGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGI 268 (309)
T ss_pred CCCHHH------------HHHHHHcCCEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECcccCCC
Confidence 999999 99999999999999999999876789999999999999999999999999999996
No 4
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=357.22 Aligned_cols=213 Identities=24% Similarity=0.337 Sum_probs=182.1
Q ss_pred hHHhcCCcceEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc---
Q psy12861 42 PRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED--- 116 (292)
Q Consensus 42 prlr~Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg--- 116 (292)
+||++|||.+|+++.+.++..+.+..+..++.+...+.+.+..... .++.+++| ++.+++ |++++ +++||
T Consensus 32 ~~~~~gGv~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~d--~~~a~~~gk~~~~-l~~ega~~ 106 (313)
T COG2355 32 VRLRAGGVTAQFFAVSVGEGFPTTNKSRDALGQQLKFIRILSELER--RLVRTAAD--IRLALKEGKIGAV-LHMEGAEP 106 (313)
T ss_pred hhhhccceeeEeeccccCCCCCCchhHHHHHHHHHHHHHHHHhhhh--hhcccHHH--HHHHhhcCceeEE-EeccCccc
Confidence 8999999999999987766544344567778777777777766543 68899999 888887 99999 99999
Q ss_pred -------hhhHHHHHHHhhcCCCchhh-hhhhhhcchhhhhhhcccccCCCCCchhhhhhhcc------cccccCCcccc
Q psy12861 117 -------VSHYPDLLAALLDHPTWTET-QVKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGM 182 (292)
Q Consensus 117 -------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~ 182 (292)
|+.||++|||+++ ++||.. .+|+|| .++..+|||++||++|++| ||+||+|++|+
T Consensus 107 ~~~dl~~L~~~~~~GvR~lg-ltwn~~N~~g~g~----------~~~~~~GLs~~Gk~lV~~~N~LgIiiDlSH~s~kt~ 175 (313)
T COG2355 107 LGDDLDKLELFHALGVRSLG-LTWNRDNLFGDGC----------YERTGGGLTPFGKELVREMNELGIIIDLSHLSDKTF 175 (313)
T ss_pred ccccHHHHHHHHHhCceEEE-eeeccCCcccCcc----------CCCCCCCCCHHHHHHHHHHHhcCCEEEecccCCccH
Confidence 9999999999999 899999 999998 4567789999999999999 99999999999
Q ss_pred ceee-eeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccC--CC
Q psy12861 183 VGAQ-FWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTC--SL 259 (292)
Q Consensus 183 ~da~-~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~--~~ 259 (292)
+|++ .+..++..||++++| +..++||++|++ +|+|+++|||||+|++|.|+++ .+
T Consensus 176 ~Dvl~~s~~PviaSHSN~~a----------l~~h~RNl~D~q------------lkaI~~~gGvIgv~~~~~fl~~~~~~ 233 (313)
T COG2355 176 WDVLDLSKAPVVASHSNARA----------LVDHPRNLSDEQ------------LKAIAETGGVIGVNFIPAFLRPGGAA 233 (313)
T ss_pred HHHHhccCCceEEecCCchh----------ccCCCCCCCHHH------------HHHHHhcCCEEEEEeehhhccCCCCC
Confidence 9998 344445555555332 344555999999 9999999999999999999996 45
Q ss_pred CCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q psy12861 260 NSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292 (292)
Q Consensus 260 ~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~~ 292 (292)
++|++++++||+|+++++|+|||||||||||+.
T Consensus 234 ~atldd~v~hI~h~v~~~G~dhVglGsDf~g~~ 266 (313)
T COG2355 234 RATLDDLVRHIDHFVELVGIDHVGLGSDFDGGT 266 (313)
T ss_pred CCCHHHHHHHHHHHHHhcCcceeEecccccCCC
Confidence 789999999999999999999999999999973
No 5
>KOG4127|consensus
Probab=98.72 E-value=1.5e-08 Score=96.90 Aligned_cols=113 Identities=37% Similarity=0.593 Sum_probs=87.4
Q ss_pred cccccCCccccceeeeeeccccCC--CCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEe
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCS--SQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVS 249 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~--~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~ 249 (292)
.|+.++ ++|+++|+|||+|++|+ .+..+||+.|+||+|.++||++.+|+...+++|++++....+.= +.--+|||.
T Consensus 102 Tdl~rl-Rqg~Vg~qfWs~~vpC~~~~q~~dAVrltLEqID~vrRm~~~y~~~~~~vtsa~~~~q~~~~g-kiA~LiGVe 179 (419)
T KOG4127|consen 102 TDLFRL-RQGLVGAQFWSAYVPCQSQDQYLDAVRLTLEQIDVVRRMCAMYPETFLLVTSADGIEQTHRRG-KIASLIGVE 179 (419)
T ss_pred ccHHHH-hcCccceEEEEEEeecCCccchhHHHHHHHHHHHHHHHHHHhcccceeeeechhhHHHHHHhc-cceeeeccc
Confidence 577789 99999999999999999 44459999999999999999999999999999999999754322 333345543
Q ss_pred eccc-----------------cc----cCC--------------------CCCCHHHHHHHHHHHHHHhCCCceeecC
Q psy12861 250 FYSL-----------------YL----TCS--------------------LNSSIDDVIAHLDHIKNVAGEDHVGLGA 286 (292)
Q Consensus 250 ~~~~-----------------fl----~~~--------------------~~~~l~~~~~Hi~~i~~l~G~dHVgiGs 286 (292)
..-. |+ +|+ -.+-.+.++..++.+..++...||.-++
T Consensus 180 GgH~i~sSlsVLR~fY~LG~RyltLTh~C~tpwA~a~~~~~~~~~~~~~gLs~FG~~vV~EMNRLGMmVDLShvS~at 257 (419)
T KOG4127|consen 180 GGHSIDTSLSVLRSFYSLGVRYLTLTHTCDTPWADAAIVDYHDGENNIGGLSPFGQKVVFEMNRLGMMVDLSHVSDAT 257 (419)
T ss_pred ccccccccHHHHHHHHHhhhhheeeeeccCCCchhhhhhcccCcCcccCCccHHHHHHHHHHhhhhheeehhhcCHHH
Confidence 2111 22 232 0245688999999999999999987554
No 6
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=97.55 E-value=0.00014 Score=69.31 Aligned_cols=102 Identities=24% Similarity=0.311 Sum_probs=76.1
Q ss_pred cccccCCccccceeeeeeccccCCCC---ChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEE
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCSSQ---HMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMV 248 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~~~---~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv 248 (292)
+|+++| ++|.+++++|++|++++.. ..++.+.+++|++.++++.+.+|+.+.+++|++|+.+ +++=.+.+.++++
T Consensus 29 ~d~~~l-~~g~v~~~~~ai~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~gkia~~l~i 106 (309)
T cd01301 29 VDLPRL-REGGVGGQVFAIFVPPGELQPTWLDALERALEQIDRVRRLIAAYPRIFVLATSSADIRR-ALKEGKLAAIISI 106 (309)
T ss_pred CcHHHH-HhcCCCEEEEEEEeCCcccCccchHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHH-HHhCCCeEEEEEE
Confidence 999999 9999999999999998765 3578999999999999999999999999999999988 3332233333344
Q ss_pred eeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q psy12861 249 SFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLG 285 (292)
Q Consensus 249 ~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiG 285 (292)
-.. ..++.=++.|+.+.++ |+..+++-
T Consensus 107 Eg~---------~~l~~~~~~l~~~~~l-GvR~i~Lt 133 (309)
T cd01301 107 EGA---------HALGGDLALLRLLYRL-GVRYLGLT 133 (309)
T ss_pred ecc---------ccccCCHHHHHHHHHc-CCeEEEee
Confidence 211 2233335566666555 77777764
No 7
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=96.79 E-value=0.00092 Score=63.91 Aligned_cols=75 Identities=28% Similarity=0.354 Sum_probs=60.4
Q ss_pred cccccCCccccceeeeeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEE
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMV 248 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv 248 (292)
+|++++ ++|++.+++++++++++.....+...+++|++.++++.+..|+.+++++|++|+.+ ++.=.+.+.++++
T Consensus 36 ~~l~~l-~~ggv~~~~~ai~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~~~di~~-~~~~gk~avil~i 110 (320)
T PF01244_consen 36 VDLPRL-REGGVRAQFFAIFVPPDFEGDEAFERALEQIDLFRRLIEAHPDRLRIVRSAADIER-AKKEGKIAVILGI 110 (320)
T ss_dssp SCHHHH-HHHTEEEEEEEEE--TTSHHHHHHHHHHHHHHHHHHHHHHCTTTEEE-SSHHHHHH-HHHTT-EEEEEEE
T ss_pred ccHHHH-HhcCCCEEEEEEEeccccccchHHHHHHHHHHHHHHHHHhCCcceeecCCHHHHHH-HHhcCCEEEEEEe
Confidence 899999 99999999999999997777789999999999999999999999999999999988 3332233334444
No 8
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=68.49 E-value=9.3 Score=34.16 Aligned_cols=42 Identities=19% Similarity=0.376 Sum_probs=32.9
Q ss_pred HHHHHhCCeEEEEeecccc-ccCCCCCCHHHHHHHH-HHHHHHhCCCc
Q psy12861 236 VTLMALNDGIVMVSFYSLY-LTCSLNSSIDDVIAHL-DHIKNVAGEDH 281 (292)
Q Consensus 236 iraia~~GGvIgv~~~~~f-l~~~~~~~l~~~~~Hi-~~i~~l~G~dH 281 (292)
+.++++.|++|.--. |.| ..+ .|+||+++|+ -.+.++.|++|
T Consensus 137 Mlkl~~~GaiI~Pp~-PaFY~~P---~sieDlvd~~v~rvLD~lgI~~ 180 (191)
T COG0163 137 MLKLAEMGAIIMPPM-PAFYHKP---QSIEDLVDFVVGRVLDLLGIEH 180 (191)
T ss_pred HHHHHHCCCEecCCC-hhhhcCC---CCHHHHHHHHHHHHHHHhCCCC
Confidence 778889999887644 444 444 5999999986 48889999987
No 9
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=66.18 E-value=9.9 Score=36.59 Aligned_cols=95 Identities=28% Similarity=0.525 Sum_probs=70.1
Q ss_pred CCcceEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHHHcCCCeEEecCccchhHHhhhcceeeeeccccchhhHHHHHHH
Q psy12861 47 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLLAA 126 (292)
Q Consensus 47 Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~d~~i~~~~~~~~~i~l~iEgl~~~~~lGvr 126 (292)
|-|++.+++.|+........+++...++++.+-+.+-. +.+.+-+.-.. +...|-++|.+..|.++=.+
T Consensus 216 GvIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~--dhVglGsDf~g---------~~~~p~gled~~~l~~l~~~ 284 (313)
T COG2355 216 GVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGI--DHVGLGSDFDG---------GTGPPDGLEDVGKLPNLTAA 284 (313)
T ss_pred CEEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCc--ceeEecccccC---------CCCCchhhcChhHHHHHHHH
Confidence 55677778888864111244688888999988887764 56766555544 22224899999999999888
Q ss_pred hhcCCCchhhhhhhhhcchhhhhhhcc
Q psy12861 127 LLDHPTWTETQVKKLAGLNFLRVLSKA 153 (292)
Q Consensus 127 ~l~~~~~~~~~~~~g~~~N~lr~~~~~ 153 (292)
++. ..|+++.+..-++.|++|+++..
T Consensus 285 L~~-~G~~e~~i~~i~~~N~lRV~~~~ 310 (313)
T COG2355 285 LIE-RGYSEEEIEKIAGENWLRVLKEV 310 (313)
T ss_pred HHH-cCCCHHHHHHHHHHhHHHHHHHH
Confidence 888 58999999899999999998754
No 10
>KOG3968|consensus
Probab=44.14 E-value=33 Score=34.40 Aligned_cols=48 Identities=23% Similarity=0.201 Sum_probs=35.6
Q ss_pred HHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q psy12861 236 VTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292 (292)
Q Consensus 236 iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~~ 292 (292)
|+.++++|-.|..++.+.++=..+.+.+..++++ |+- ||+|+|+.|.+
T Consensus 287 i~~l~k~g~svshCP~Sn~~L~sG~~~vr~lL~~--------~v~-VgLGtDv~~~s 334 (439)
T KOG3968|consen 287 IELLAKRGCSVSHCPTSNSILGSGIPRVRELLDI--------GVI-VGLGTDVSGCS 334 (439)
T ss_pred HHHHHhcCCceEECCcchhhhccCCccHHHHHhc--------Cce-EeecCCccccc
Confidence 9999999999998887666433345667666654 443 99999998753
No 11
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=35.09 E-value=1.3e+02 Score=28.64 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=39.2
Q ss_pred HHHHHHHHhCCeEEEE-eeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q psy12861 233 DIGVTLMALNDGIVMV-SFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYD 289 (292)
Q Consensus 233 ~~~iraia~~GGvIgv-~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfD 289 (292)
.+++..|+++..|..= +.. +-.+++.-+.+++..-.+.++++.|.|++=+||||-
T Consensus 183 ~~~m~~la~~pNv~~KlSG~--~~~~~~~w~~~~v~p~~e~~i~~fg~dR~vfGSdwP 238 (279)
T COG3618 183 KAALARLARRPNVWAKLSGV--YAYSDESWTVEDVRPYVEELIELFGWDRFVFGSDWP 238 (279)
T ss_pred HHHHHHHHhCCCeEEEEeee--cccccCCCCHHHHHHHHHHHHHhcCccceEecCCCC
Confidence 3457777777776543 221 111222247999999999999999999999999984
No 12
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=27.32 E-value=3.7e+02 Score=24.28 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCeEEE-EeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q psy12861 233 DIGVTLMALNDGIVM-VSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDG 290 (292)
Q Consensus 233 ~~~iraia~~GGvIg-v~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG 290 (292)
...++++ +...|.- ++.... +.. ...+.+++...++.+.+. |.|.+-+||||-.
T Consensus 169 ~~~l~~l-~~pNV~~k~Sg~~~-~~~-~~~~~~~~~~~~~~~~~~-g~dRlmfGSD~P~ 223 (263)
T cd01311 169 AALLKLI-EEGNVWVKVSGPYR-LSV-KQEAYADVIAFARQIVAA-APDRLVWGTDWPH 223 (263)
T ss_pred HHHHHHH-hcCCEEEEecchhh-cCC-CCCCHHHHHHHHHHHHHh-CCCcEEEeCCCCC
Confidence 3445655 5554442 233211 121 234577888888888888 9999999999964
No 13
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=27.21 E-value=51 Score=29.60 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHhCCe-EEEEeeccccccCC-CCCCHHHHHHHHHHHHHHhCCCceee
Q psy12861 236 VTLMALNDG-IVMVSFYSLYLTCS-LNSSIDDVIAHLDHIKNVAGEDHVGL 284 (292)
Q Consensus 236 iraia~~GG-vIgv~~~~~fl~~~-~~~~l~~~~~Hi~~i~~l~G~dHVgi 284 (292)
.++++++|. ||||+...+|-+.. |..+-.|+.+-|+|..+.-|.++|-|
T Consensus 22 a~~l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvL 72 (192)
T PF06057_consen 22 AEALAKQGVPVVGVDSLRYFWSERTPEQTAADLARIIRHYRARWGRKRVVL 72 (192)
T ss_pred HHHHHHCCCeEEEechHHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 678888886 88999998888743 34455667777888888888887754
No 14
>PRK07203 putative chlorohydrolase/aminohydrolase; Validated
Probab=26.95 E-value=60 Score=31.95 Aligned_cols=44 Identities=20% Similarity=0.177 Sum_probs=29.5
Q ss_pred HHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q psy12861 236 VTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGY 288 (292)
Q Consensus 236 iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDf 288 (292)
++.++++|-.|..|..+-+.-..+.+.+.++.++ |+. ||||||-
T Consensus 270 ~~~la~~g~~v~~~P~sn~~l~~g~~p~~~~~~~--------Gv~-v~lGtD~ 313 (442)
T PRK07203 270 IDLLKETDTFVVHNPESNMGNAVGYNPVLEMIKN--------GIL-LGLGTDG 313 (442)
T ss_pred HHHHHhcCCeEEECchhhhhcccCCCCHHHHHHC--------CCe-EEEcCCC
Confidence 8899999988877765433222234556655543 776 9999994
No 15
>PRK07094 biotin synthase; Provisional
Probab=21.97 E-value=1.5e+02 Score=27.82 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=32.8
Q ss_pred ccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecC
Q psy12861 228 SAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGA 286 (292)
Q Consensus 228 s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGs 286 (292)
+.++..++++.+.+.|=-++. .++-.-|.-+.+++.++++++.++ +++.+++..
T Consensus 163 s~~~~~~~i~~l~~~Gi~v~~----~~iiGlpget~ed~~~~l~~l~~l-~~~~v~~~~ 216 (323)
T PRK07094 163 SFENRIACLKDLKELGYEVGS----GFMVGLPGQTLEDLADDILFLKEL-DLDMIGIGP 216 (323)
T ss_pred CHHHHHHHHHHHHHcCCeecc----eEEEECCCCCHHHHHHHHHHHHhC-CCCeeeeec
Confidence 445566667777666532222 223222345788888888888775 677777643
No 16
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=20.71 E-value=82 Score=29.45 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q psy12861 261 SSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291 (292)
Q Consensus 261 ~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~ 291 (292)
-|-|+++.| +.+..++|.|++++|-||+
T Consensus 147 iSGDdIv~~---LA~~l~pd~v~f~tdVdGV 174 (252)
T COG1608 147 ISGDDIVLH---LAKELKPDRVIFLTDVDGV 174 (252)
T ss_pred EeccHHHHH---HHHHhCCCEEEEEecCCce
Confidence 467888765 5788999999999999995
No 17
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=20.51 E-value=2.1e+02 Score=25.29 Aligned_cols=45 Identities=13% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHH-HHHHHHhCCCc
Q psy12861 234 IGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHL-DHIKNVAGEDH 281 (292)
Q Consensus 234 ~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi-~~i~~l~G~dH 281 (292)
++++.+.+. |++-+-..+.|+.. ..+++|+++++ -.+.+..|++|
T Consensus 133 ~Nl~~L~~~-G~~vi~P~~g~~a~--p~~~~~~~~~~v~~~~~~l~~~~ 178 (185)
T PRK06029 133 RNMTKLAEM-GAIIMPPVPAFYHR--PQTLEDMVDQTVGRVLDLFGIEH 178 (185)
T ss_pred HHHHHHHHC-cCEEECCCcccccC--CCCHHHHHHHHHHHHHHhcCCCC
Confidence 347788665 77777777777763 25899999975 46777778877
Done!