Query psy12861
Match_columns 292
No_of_seqs 148 out of 1345
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:40:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3id7_A Dipeptidase; streptomyc 100.0 1.1E-60 3.7E-65 462.3 10.2 238 1-292 20-325 (400)
2 3neh_A Renal dipeptidase famil 100.0 8.7E-60 3E-64 444.2 11.7 232 1-292 9-268 (318)
3 1itu_A Renal dipeptidase; glyc 100.0 1.7E-58 5.8E-63 443.2 12.7 242 1-291 20-292 (369)
4 3ly0_A Dipeptidase AC. metallo 100.0 1.4E-58 4.9E-63 442.3 11.0 242 1-292 13-311 (364)
5 2rag_A Dipeptidase; aminohydro 100.0 3.8E-56 1.3E-60 433.0 12.1 236 1-291 53-364 (417)
6 3b40_A PVDM, probable dipeptid 100.0 1.7E-55 5.9E-60 428.4 10.0 238 1-291 28-363 (417)
7 2i5g_A Amidohydrolase; NYSGXRC 100.0 1.8E-48 6.2E-53 368.5 10.0 200 37-288 22-250 (325)
8 3id7_A Dipeptidase; streptomyc 98.4 1.1E-07 3.9E-12 91.8 4.7 111 172-286 50-196 (400)
9 3ly0_A Dipeptidase AC. metallo 98.3 2.4E-07 8.3E-12 88.5 4.3 75 172-248 40-138 (364)
10 1itu_A Renal dipeptidase; glyc 98.1 1.4E-06 4.8E-11 83.4 4.3 75 172-248 50-124 (369)
11 2rag_A Dipeptidase; aminohydro 98.0 3.5E-06 1.2E-10 81.9 4.7 114 171-286 79-234 (417)
12 3neh_A Renal dipeptidase famil 97.9 2.8E-06 9.6E-11 79.8 2.0 62 172-234 33-94 (318)
13 3b40_A PVDM, probable dipeptid 97.7 2.3E-05 7.8E-10 76.1 4.4 113 171-285 49-217 (417)
14 2i5g_A Amidohydrolase; NYSGXRC 95.3 0.0087 3E-07 56.1 3.1 67 174-248 26-92 (325)
15 2vc7_A Aryldialkylphosphatase; 51.5 37 0.0013 29.7 7.2 54 231-289 205-258 (314)
16 2lnd_A De novo designed protei 43.8 61 0.0021 24.3 6.1 64 215-278 22-103 (112)
17 4do7_A Amidohydrolase 2; enzym 41.2 27 0.00093 30.9 4.6 28 262-289 219-246 (303)
18 3iix_A Biotin synthetase, puta 36.4 43 0.0015 29.9 5.2 53 228-285 176-228 (348)
19 2ejb_A Probable aromatic acid 31.0 79 0.0027 26.7 5.6 45 234-281 136-181 (189)
20 3zqu_A Probable aromatic acid 29.8 53 0.0018 28.3 4.4 46 234-282 149-195 (209)
21 1bf6_A Phosphotriesterase homo 26.2 1.6E+02 0.0055 24.9 7.0 55 230-289 190-244 (291)
22 2ffi_A 2-pyrone-4,6-dicarboxyl 24.8 51 0.0017 28.3 3.4 54 236-290 185-239 (288)
23 3t7v_A Methylornithine synthas 23.3 1.1E+02 0.0038 27.4 5.6 52 228-285 186-237 (350)
24 3ij6_A Uncharacterized metal-d 22.8 3.2E+02 0.011 24.1 8.5 54 201-254 75-134 (312)
25 4i6k_A Amidohydrolase family p 20.1 2E+02 0.0067 25.0 6.4 52 236-289 198-250 (294)
No 1
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=100.00 E-value=1.1e-60 Score=462.35 Aligned_cols=238 Identities=32% Similarity=0.494 Sum_probs=216.1
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCCChhHHHHHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRR 80 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 80 (292)
|||+||.++..+.+++...|++.+ .++.+|+||||||+|+|++||||+|+|+.. .++++.+++|++.+++
T Consensus 20 H~D~~~~l~~~~~~~~~~~~~~~~--------~~~~~~vdlprlr~Ggv~~qf~av~v~~~~--~~a~~~~l~qid~~~~ 89 (400)
T 3id7_A 20 HNDLPWALREQVRYDLDARDIAAD--------QSAHLHTDLARLRSGGVGAQYWSVYVRSDL--PGAVTATLEQIDCVRR 89 (400)
T ss_dssp EECHHHHHHHHHTTCGGGGCTTSC--------CTTTCSCCHHHHHHTTEEEEEEECCCCSSS--SCHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHhcccccccccccc--------CCCCccccHHHHHhcCCcEEEEEEEeCCcc--hHHHHHHHHHHHHHHH
Confidence 999999999988888877787542 235789999999999999999999999875 5789999999999999
Q ss_pred HHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchhh-hhhhhhcchhh
Q psy12861 81 FTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTET-QVKKLAGLNFL 147 (292)
Q Consensus 81 ~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~N~l 147 (292)
+++++|+.|++++|++| ++++++ |++++ ++||| |+.||++|||+|+ +|||.. .+++++.
T Consensus 90 ~~~~~~~~~~~~~t~~d--i~~~~~~gkia~l-lgiEg~~~i~~~l~~L~~~y~lGvR~~t-Lthn~~N~~ad~~~---- 161 (400)
T 3id7_A 90 LIDRHPGELRAALTAAD--MEAARAEGRIASL-MGAEGGHSIDNSLATLRALYALGVRYMT-LTHNDNNAWADSAT---- 161 (400)
T ss_dssp HHHHCTTTEEECCSHHH--HHHHHHHTCEEEE-EEEESGGGGTTCHHHHHHHHHTTEEEEE-SCSSSCCSSBCBTT----
T ss_pred HHHHCCCcEEEeCCHHH--HHHHHHcCCeeeE-EEEechhhhcCCHHHHHHHHHcCCeEEE-eeccCCCcccccCC----
Confidence 99999999999999999 999988 99999 99999 9999999999999 899988 9998862
Q ss_pred hhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee----------eeeccccCCCCChhHHHHHHHHHHH
Q psy12861 148 RVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------FWSAYVPCSSQHMDAVQITMEQVDV 211 (292)
Q Consensus 148 r~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ss~~~~~~~~~~~av~~t~~q~d~ 211 (292)
.++.++|||+|||++|+|| ||+||+|+++++|++ ||+++.+|+|+|
T Consensus 162 -----~~~~~~GLT~fG~~vV~eMNrlGmiVDlSH~s~~t~~dvl~~S~~PvIaSHSnaral~~hpR------------- 223 (400)
T 3id7_A 162 -----DEPGVGGLSAFGREVVREMNREGMLVDLSHVAATTMRDALDTSTAPVIFSHSSSRAVCDHPR------------- 223 (400)
T ss_dssp -----SCCCSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTT-------------
T ss_pred -----CCCCCCCCCHHHHHHHHHHHHcCCeEEcCCCCHHHHHHHHHhCCCCEEEecCCccccCCCCC-------------
Confidence 2345799999999999999 999999999999998 666666666666
Q ss_pred HHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCC---------------------------------
Q psy12861 212 IRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCS--------------------------------- 258 (292)
Q Consensus 212 v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~--------------------------------- 258 (292)
|+||++ ||+|+++||||||||+|.||++.
T Consensus 224 ------Nl~De~------------lkala~~GGVIgvnf~~~Fl~~~~~~w~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 285 (400)
T 3id7_A 224 ------NIPDDV------------LERLSANGGMAMVTFVPKFVLQAAVDWTAEADDNMRAHGFHHLDSSPEAMKVHAAF 285 (400)
T ss_dssp ------SBCHHH------------HTTHHHHTCEEEECCCHHHHCHHHHHHHHHHHHHHHHTTCCTTCCSHHHHHHHHHH
T ss_pred ------CCCHHH------------HHHHHHcCCEEEEecchhhccCcccchhhhhhhhhhhccccccccchhhhhhhhhh
Confidence 999999 99999999999999999999754
Q ss_pred ------CCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q psy12861 259 ------LNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292 (292)
Q Consensus 259 ------~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~~ 292 (292)
+.+|++++++||+|+++++|+|||||||||||++
T Consensus 286 ~~~~p~~~atl~dv~~HIdhi~~l~G~dhVgiGsDfDG~~ 325 (400)
T 3id7_A 286 EERVPRPVATVSTVADHLDHMREVAGVDHLGIGGDYDGTP 325 (400)
T ss_dssp HHHSCCCCCBHHHHHHHHHHHHHHHCGGGEEECCCBTTCS
T ss_pred hhccCCCCCCHHHHHHHHHHHHHhcCCceEEECCCCCCCC
Confidence 5689999999999999999999999999999973
No 2
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=100.00 E-value=8.7e-60 Score=444.21 Aligned_cols=232 Identities=19% Similarity=0.245 Sum_probs=208.9
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCCChhHHHHHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRR 80 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~ 80 (292)
|+|+||.+... -+..++. +++.+|+|+||||+|+|++||||+|+|+..++.++++.+++|++.+++
T Consensus 9 H~D~~~~l~~~----~~~~~~~----------~~~~~~~dl~rlr~G~v~~q~~a~~v~~~~~~~~~~~~~l~qid~~~~ 74 (318)
T 3neh_A 9 HCDALYKLQAG----KGKYTFQ----------DAEELDVNFERLIEAKMLLQGFAIFLDEDIPVEHKWKKAVEQVNIFKQ 74 (318)
T ss_dssp EECHHHHHHHH----TTCCCTT----------TCTTCSSCHHHHHHHTEEEEEEEECCCTTSCGGGHHHHHHHHHHHHHH
T ss_pred cCCHHHHHhhc----ccccccc----------cCCCCcCcHHHHHhcCCCEEEEEEEeCCCCCchHHHHHHHHHHHHHHH
Confidence 89999988431 1222332 345789999999999999999999999987777899999999999999
Q ss_pred HHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchhh-hhhhhhcchhh
Q psy12861 81 FTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTET-QVKKLAGLNFL 147 (292)
Q Consensus 81 ~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~N~l 147 (292)
+++++|+.++++++++| |++ ++ |++++ +++|| |+.||++|||+|+ +|||.. .+++|+
T Consensus 75 ~~~~~~~~~~~~~s~~d--i~~-~~~gkia~~-l~iEg~~~i~~~l~~L~~~y~lGvR~~~-Lt~n~~N~~a~g~----- 144 (318)
T 3neh_A 75 HVLHKGGIIHHVKKWCD--LEN-LPEDKIGAM-LTLEGIEPIGRDLDKLTQLLDGGVLSVG-LTWNNANLAADGI----- 144 (318)
T ss_dssp HTTTSTTTEEECCSHHH--HHT-CCTTCEEEE-EEEESSGGGTTCHHHHHHHHHTTEEEEE-SCSSSBCSSBBBT-----
T ss_pred HHHhCCCcEEEECCHHH--HHH-HhcCCEEEE-EeeechhhcCCCHHHHHHHHHcCCeEEE-eeecCCCccccCC-----
Confidence 99999999999999999 977 55 99999 99999 9999999999999 899988 999887
Q ss_pred hhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee---------eeeccccCCCCChhHHHHHHHHHHHH
Q psy12861 148 RVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ---------FWSAYVPCSSQHMDAVQITMEQVDVI 212 (292)
Q Consensus 148 r~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~---------~ss~~~~~~~~~~~av~~t~~q~d~v 212 (292)
.++.++|||+|||++|+|| ||+||+|+++++|++ ||+++.+|+|+|
T Consensus 145 -----~~~~~~GLT~~G~~vV~eMnrlGmivDlSH~s~~t~~dvl~~s~~PiaSHSnaral~~h~R-------------- 205 (318)
T 3neh_A 145 -----MEERGAGLTRFGKDIIHLLNERKVFTDVSHLSVKAFWETLEQAEFVIASHSNAKAICSHPR-------------- 205 (318)
T ss_dssp -----TCTTCCCBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSEEESSCCBTTTSCCTT--------------
T ss_pred -----CCCCCCCCChhhHHHHHHHHHcCCeEEcCCCCHHHHHHHHHhcCCCcccccchhhcCCCCC--------------
Confidence 3456899999999999999 999999999999998 666666666666
Q ss_pred HHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCCCC
Q psy12861 213 RRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292 (292)
Q Consensus 213 ~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~~ 292 (292)
|+||++ ||+|+++||||||||+|.|+++++.+|++++++||+|+++++|+|||||||||||++
T Consensus 206 -----Nl~D~~------------l~ala~~GGvigv~~~~~fl~~~~~~tl~~~~~Hi~hi~~l~G~dhVgiGsDfDG~~ 268 (318)
T 3neh_A 206 -----NLDDEQ------------IKAMIEHDAMIHVVFYPLFTTNNGVADTEDVIRHIDHICELGGLKNIGFGSDFDGIP 268 (318)
T ss_dssp -----SBCHHH------------HHHHHHTTCEEEECCCHHHHCTTSCCBHHHHHHHHHHHHHTTCGGGEEECCCBTSCS
T ss_pred -----CCCHHH------------HHHHHHcCCEEEEEeeHHhhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECCCCCCCC
Confidence 999999 999999999999999999999888899999999999999999999999999999973
No 3
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=100.00 E-value=1.7e-58 Score=443.23 Aligned_cols=242 Identities=37% Similarity=0.630 Sum_probs=215.4
Q ss_pred CCChhHHHHHHhhccCcc--cCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCCChhHHHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVN--FNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVI 78 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~ 78 (292)
|+|+||++++++.+++.. ++|. ..+++|+|+||||+|+|++||||+|+|+...+.++++.+++|++.+
T Consensus 20 H~D~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~dl~rl~~G~v~~q~~ai~v~~~~~~~~~~~~~l~qid~~ 89 (369)
T 1itu_A 20 HNDLPWQLLDMFNNRLQDERANLT----------TLAGTHTNIPKLRAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVV 89 (369)
T ss_dssp EECHHHHHHHHHTTCTTSGGGCTT----------TCCSSSCCHHHHHHTTEEEEEEEECCCGGGTTTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhcccccccccccc----------cCCCCcccHHHHHhcCCcEEEEEEEcCCCCCchHHHHHHHHHHHHH
Confidence 999999999887777643 3432 3356899999999999999999999998766678899999999999
Q ss_pred HHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchhh-hhhhhhcch
Q psy12861 79 RRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTET-QVKKLAGLN 145 (292)
Q Consensus 79 ~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~N 145 (292)
+++++++|+.++++++++| ++++++ |++++ +++|| |+.||++|||+|+ +|||.. .+++++...
T Consensus 90 ~~~~~~~~~~~~~~~s~~d--i~~~~~~gkia~~-l~iEg~~~i~~~l~~L~~~y~lGvR~~~-Lthn~~N~~a~~~~~~ 165 (369)
T 1itu_A 90 HRMCRMYPETFLYVTSSAG--IRQAFREGKVASL-IGVEGGHSIDSSLGVLRALYQLGMRYLT-LTHSCNTPWADNWLVD 165 (369)
T ss_dssp HHHHHHCTTTEEECCSHHH--HHHHHHHTCEEEE-EEEECGGGGTTCHHHHHHHHHTTEEEEE-SCSSSCCSSBCBGGGG
T ss_pred HHHHHhcCCcEEEECCHHH--HHHHHHcCCcEEE-EEEecchhhcCCHHHHHHHHHcCCeEEE-eecccCCccccccccc
Confidence 9999999999999999999 999887 99999 99999 9999999999999 899988 888875211
Q ss_pred hhhhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee----------eeeccccCCCCChhHHHHHHHHH
Q psy12861 146 FLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------FWSAYVPCSSQHMDAVQITMEQV 209 (292)
Q Consensus 146 ~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ss~~~~~~~~~~~av~~t~~q~ 209 (292)
. ...+...+|||+|||++|+|| ||+||+|+++++|++ ||+++.+|+|+|
T Consensus 166 ~----~~~~~~~~GLT~~G~~vV~emnrlGmivDlSH~s~~~~~dvl~~s~~PviaSHSn~ral~~h~R----------- 230 (369)
T 1itu_A 166 T----GDSEPQSQGLSPFGQRVVKELNRLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRR----------- 230 (369)
T ss_dssp G----TSSCCSSSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCCEESSCCBTTTSCCTT-----------
T ss_pred C----CCCcccCCCcCHhHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHhcCCCEEEeCCChhhcCCCCC-----------
Confidence 0 012346789999999999999 999999999999998 666666666666
Q ss_pred HHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q psy12861 210 DVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYD 289 (292)
Q Consensus 210 d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfD 289 (292)
|+||++ ||+|+++|||||+||+|.|+++++.++++++++||+|+++++|+||||||||||
T Consensus 231 --------Nl~De~------------l~~la~~GGvigv~~~~~fl~~~~~~t~~~~~~hi~hi~~~~G~dhVgiGsDfd 290 (369)
T 1itu_A 231 --------NVPDDV------------LRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFD 290 (369)
T ss_dssp --------SBCHHH------------HHHHHHHTCEEEECCCHHHHTSSSCCBHHHHHHHHHHHHHHHCGGGEEECCCTT
T ss_pred --------CCCHHH------------HHHHHHcCCeEEEEechhhcCCCCCCCHHHHHHHHHHHHHhhCCCeEEECCCCC
Confidence 999999 999999999999999999999878899999999999999999999999999999
Q ss_pred CC
Q psy12861 290 GI 291 (292)
Q Consensus 290 G~ 291 (292)
|+
T Consensus 291 G~ 292 (369)
T 1itu_A 291 GV 292 (369)
T ss_dssp SC
T ss_pred CC
Confidence 96
No 4
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=100.00 E-value=1.4e-58 Score=442.33 Aligned_cols=242 Identities=21% Similarity=0.333 Sum_probs=207.6
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCC------------------
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSS------------------ 62 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~------------------ 62 (292)
|||+||++... +.....++. ...+.+|+||||||+|++++||||+|+||+.
T Consensus 13 H~D~l~~l~~~--~~~~~~~~~---------~~~~~~h~DlpRl~~G~v~~qffa~yv~~~~~~~~~~~~~~~~~~~~~~ 81 (364)
T 3ly0_A 13 HNDFLLRLLRN--PANRETIWL---------KGDGTGHLDLPRMKEGGFAGGFFAIYVPSPQAHDAAHFEAMMDAPPFEL 81 (364)
T ss_dssp EECHHHHHHHC--GGGHHHHHH---------TCCSCSSCCHHHHHHHTEEEEEEEECCCCSSCTTCHHHHHHHHSSSEEC
T ss_pred ccCHHHHHHHh--ccccccccc---------ccCCCCccCHHHHHhcCCcEEEEEEEecCccCccccccccccccccccc
Confidence 89999988642 111111111 1345789999999999999999999999865
Q ss_pred ------ChhHHHHHHHHHHHHHHHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHH
Q psy12861 63 ------QHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLL 124 (292)
Q Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lG 124 (292)
++.++++.+++|++.++++++++|+.|+++++++| |+++++ |++++ +++|| |+.||++|
T Consensus 82 ~~~~~~~~~~a~~~~l~qid~~~~~~~~~~~~~~~~~s~~d--i~~~~~~gkia~~-l~iEg~~~i~~~l~~L~~~y~lG 158 (364)
T 3ly0_A 82 PLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCRTAAE--VRSCHADGIVSGI-MHMEGAEAIGADLDALHLFHSLG 158 (364)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEECCSHHH--HHHHHHHTCEEEE-EEEESCTTSCTTCHHHHHHHHHT
T ss_pred ccccccCHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCHHH--HHHHHHcCCeeEE-EEEechhhhCCCHHHHHHHHHhC
Confidence 33578999999999999999999999999999999 999988 99999 99999 99999999
Q ss_pred HHhhcCCCchhh-hhhhhhcchhhhhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee----------e
Q psy12861 125 AALLDHPTWTET-QVKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------F 187 (292)
Q Consensus 125 vr~l~~~~~~~~-~~~~g~~~N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ 187 (292)
||+|+ +|||.. .+++|+...+. ...+..+|||+|||++|+|| ||+||+|+++++|++ |
T Consensus 159 vR~~~-Lt~n~~N~~a~g~~~~~~----~~~~~~~GLT~~G~~vV~emnrlGmivDlSH~s~~t~~dvl~~s~~PviaSH 233 (364)
T 3ly0_A 159 LRSLG-PVWSRPTVFGHGVPFRFP----GSPDTGEGLTEAGRRLVAECNRLKIMLDLSHLNEKGFDDVARLSDAPLVATH 233 (364)
T ss_dssp EEEEE-SCSSSCBTTBCBCCCEES----CCSCCSCCCCHHHHHHHHHHHHHTCEEBCTTBCHHHHHHHHHHCSSCCEETT
T ss_pred CeEEE-eeccCCCccccccccccC----CCCCCCCCCCHHHHHHHHHHHHcCCEEEcCCCCHHHHHHHHHhcCCCeEEeC
Confidence 99999 899998 99988732110 01235689999999999999 999999999999998 6
Q ss_pred eeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCC----CCCCH
Q psy12861 188 WSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCS----LNSSI 263 (292)
Q Consensus 188 ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~----~~~~l 263 (292)
|+++.+|+|+| |+||++ ||+|+++||||||||+|.|++++ +.+++
T Consensus 234 Snaral~~h~R-------------------Nl~De~------------l~ala~~GGvigv~f~~~fl~~~~~~~~~~tl 282 (364)
T 3ly0_A 234 SNAHAVTPSTR-------------------NLTDRQ------------LAMIRESRGMVGLNFATSFLREDGRRSAEMGW 282 (364)
T ss_dssp CCBTTTSCCTT-------------------SBCHHH------------HHHHHHTTCEEEECCCHHHHSTTCCCCSCCCS
T ss_pred CchhhcCCCCC-------------------CCCHHH------------HHHHHHcCcEEEEeccHhhhcCCCCCCCCCCH
Confidence 66666666666 999999 99999999999999999999864 36899
Q ss_pred HHHHHHHHHHHHHhCCCceeecCCCCCCC
Q psy12861 264 DDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292 (292)
Q Consensus 264 ~~~~~Hi~~i~~l~G~dHVgiGsDfDG~~ 292 (292)
+++++||+|+++++|+|||||||||||+.
T Consensus 283 ~~~~~Hi~hi~~l~G~dhVgiGsDfdG~~ 311 (364)
T 3ly0_A 283 EPVLRHLDHLIDRLGEDHVGMGSDFDGAT 311 (364)
T ss_dssp HHHHHHHHHHHHHHCTTSEEECCCBTTSC
T ss_pred HHHHHHHHHHHHhcCCCeEEECCCCCCCC
Confidence 99999999999999999999999999973
No 5
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=3.8e-56 Score=433.00 Aligned_cols=236 Identities=17% Similarity=0.197 Sum_probs=206.1
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCCC----hhHHHHHHHHHHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQ----HMDAVQITMEQVD 76 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~~----~~~~~~~~~~~~~ 76 (292)
|||+||.++.. ++++..++. +. .+.+|+|+||||+|+|++||||+|+|+... +.++++.+++|++
T Consensus 53 H~D~p~~l~~~------~~~~~~~~~----~~-~~~~~~dlprlr~Ggv~~q~~si~v~~~~~~~~~~~~~~~~~l~qid 121 (417)
T 2rag_A 53 HLDTPAHFGRP------GWDIADHHE----VE-HDFSQVDLPRMNQGGLDGGFFVVYIGQGELTEKGYTYARDYALHRTI 121 (417)
T ss_dssp EECTHHHHTST------TCCTTSCCC----HH-HHCCCCCHHHHHHTTCCEEEEEEECCCCCSSHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHhhhc------ccchhhhcc----cc-CCcccccHHHHHhcCCcEEEEEEecCCccCCcchhhHHHHHHHHHHH
Confidence 89999999642 344422211 11 124899999999999999999999998632 2367899999999
Q ss_pred HHHHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchhh-hhhhhhc
Q psy12861 77 VIRRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTET-QVKKLAG 143 (292)
Q Consensus 77 ~~~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~ 143 (292)
.++++++++|+.+++++|++| ++++++ |++++ ++||| |+.||++|||+|+ +|||.. .+++|+.
T Consensus 122 ~~~~~~~~~~~~~~~~~t~~d--i~~~~~~Gkia~l-lgiEg~~~i~~dl~~L~~~y~lGvR~~t-Lthn~~N~~adg~~ 197 (417)
T 2rag_A 122 EIREMLAANPDTFEMALTSDD--ARRIAKAGKKFAF-VSMENSWPVGEDLSLVETFYKEGLRMAG-PVHFRNNQLADSST 197 (417)
T ss_dssp HHHHHHHHCTTTEEECSSHHH--HHHHHHTTCEEEE-EEEECCGGGTTCTHHHHHHHHTTEEEEE-SCCSSCCSSBCBSS
T ss_pred HHHHHHHhCCCcEEEECCHHH--HHHHHHcCCEEEE-EEeechhhhcCCHHHHHHHHHcCCeEEE-ccccCCCccccccC
Confidence 999999999999999999999 999888 99999 99999 9999999999999 899999 9999872
Q ss_pred chhhhhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee----------eeeccccCCCCChhHHHHHHH
Q psy12861 144 LNFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------FWSAYVPCSSQHMDAVQITME 207 (292)
Q Consensus 144 ~N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ss~~~~~~~~~~~av~~t~~ 207 (292)
. ...+.++|||+|||++|+|| ||+||+|+++++|++ ||+++.+|+|+|
T Consensus 198 ~-------~~~~~~~GLT~~G~~vV~eMnrlGmivDlSH~s~~t~~dvl~~s~~PvIaSHSnaral~~hpR--------- 261 (417)
T 2rag_A 198 D-------PKGKIWNGYSPLGLRWLAEANRLGIVIDVSHASDDVVDQSVALSKAPIIASHSGPKAVYDHPR--------- 261 (417)
T ss_dssp C-------TTCCSSSSBCHHHHHHHHHHHHHTCEEBCTTBCHHHHHHHHHHCSSCCEEEEEEETTTSCCTT---------
T ss_pred C-------CCCCCCCCCCHhHHHHHHHHHHcCCEEECCCCCHHHHHHHHHhcCCCeEEecCchHhhCCCCC---------
Confidence 1 01235689999999999999 999999999999998 899999999988
Q ss_pred HHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCC-----------------------------
Q psy12861 208 QVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCS----------------------------- 258 (292)
Q Consensus 208 q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~----------------------------- 258 (292)
|+||++ ||+|+++||||||||+ |+++.
T Consensus 262 ----------Nl~De~------------l~~la~~GGvigv~f~--fl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (417)
T 2rag_A 262 ----------NLDDAR------------LKKIADAGGAICINSI--YLTDTTPSPERKAALEALGRAPDMKTATPEAVKA 317 (417)
T ss_dssp ----------EECHHH------------HHHHHHTTCEEEECSS--SSSCCCCCCC----------CCCTTTSCHHHHHH
T ss_pred ----------CCCHHH------------HHHHHHcCCEEEEEEE--EecCcccchhhhhhhhhhhhccccccccccchhh
Confidence 999999 9999999999999999 99864
Q ss_pred --------------CCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q psy12861 259 --------------LNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291 (292)
Q Consensus 259 --------------~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~ 291 (292)
+.+|++++++||+|+++++|+|||||||||||+
T Consensus 318 ~~~~~~~~~~~~~~~~atl~~~~~Hidhi~~~~G~dhVgiGsDfDG~ 364 (417)
T 2rag_A 318 YADKRAAIDKAHPAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDGG 364 (417)
T ss_dssp HHHHHHHHHHHSCCCCCBHHHHHHHHHHHHHHHCTTSEEECCCTTTT
T ss_pred hhhhhhhhhhccCCCCCCHHHHHHHHHHHHHhcCCceEEEccCCCCC
Confidence 268999999999999999999999999999996
No 6
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.7e-55 Score=428.37 Aligned_cols=238 Identities=11% Similarity=0.155 Sum_probs=202.7
Q ss_pred CCChhHHHHHHhhccCcccCCCCCCCCCCCCCCCCCCccchhHHhcCCcceEEEEEEeCCCC------------Ch-hHH
Q psy12861 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSS------------QH-MDA 67 (292)
Q Consensus 1 h~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lprlr~Ggv~~~~~ai~~~~~~------------~~-~~~ 67 (292)
|||+||+++. + ..++. ....+|+||||||+|++++|||++|+++.. .+ ..+
T Consensus 28 H~D~~~~l~~----~--~~~~~----------~~~~~~vDlprlr~Ggv~~qf~avyv~p~~~~~~~~~~~~~~~~~~~~ 91 (417)
T 3b40_A 28 RITVPLDFGT----T--GNEVD----------KDGPGQLDLVKAGRGRLSGAALAIFGWPEMWNGPNAPHKPTPGFVDEA 91 (417)
T ss_dssp EECCCTTTTB----T--TBCTT----------SCCSSSCCHHHHHHHTCCEEEEEEECCCCCC-----CCCCCTTHHHHH
T ss_pred ccCHHHHHHH----h--ccchh----------cCCCCcccHHHHHccCCcEEEEEEEccchhcccccccccccchhhhHH
Confidence 8999997632 1 12221 234689999999999999999999995321 01 135
Q ss_pred HHHHHHHHHHHHHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccccc----------hhhHHHHHHHhhcCCCchh
Q psy12861 68 VQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGLED----------VSHYPDLLAALLDHPTWTE 135 (292)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~iEg----------l~~~~~lGvr~l~~~~~~~ 135 (292)
.+.+++|++.++++++++|+.+.+++|++| ++++++ |++++ ++||| |+.||++|||+|+ +|||.
T Consensus 92 ~~~~~~~id~~~~~~~~~~~~~~l~~t~~d--i~~~~~~Gkia~~-lgiEg~~~i~~dl~~L~~~y~lGvR~~t-Lthn~ 167 (417)
T 3b40_A 92 RHQQEIRYKILTGMVRDFPNQVGIAYSPED--FRRLAMEGKFAIV-MSMLNAYPLGDDLSQLDKWAARGVRMFG-FSYVG 167 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTEEECSSHHH--HHHHHHTTCEEEE-EEEECSGGGTTCTHHHHHHHHTTCCEEE-CCSSS
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEeCCHHH--HHHHHHcCCEEEE-EEeecchhhcCCHHHHHHHHHcCCcEEE-ecccC
Confidence 667889999999999999999999999999 999887 99999 99999 9999999999999 89998
Q ss_pred h-hhhhhhcchhhhhhhcccccCCCCCchhhhhhhcc------cccccCCccccceee----------eeeccccCCCCC
Q psy12861 136 T-QVKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHLYATGMVGAQ----------FWSAYVPCSSQH 198 (292)
Q Consensus 136 ~-~~~~g~~~N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~s~~g~~da~----------~ss~~~~~~~~~ 198 (292)
. .+++++.... .....+..++|||+|||+||+|| ||+||+|+++++|++ ||+++.+|+|+|
T Consensus 168 ~N~~ads~~~~~--~~~~~~~~~~GLT~~G~~vV~eMNrlGmiVDlSH~s~~t~~dvl~~s~~PVIaSHSnaral~~hpR 245 (417)
T 3b40_A 168 NNDWADSSRPLP--FFNDSPDALGGLSPLGKQAVERLNDLGVIIDVSQMSTKALEQVAALSRAPIVASHSAPRALVDIKR 245 (417)
T ss_dssp CCSSBCBSSCCG--GGTCCTTTTSSBCHHHHHHHHHHHHHTCEEECTTBCHHHHHHHHHHCSSCEEEEEECBTTTSCCTT
T ss_pred CCcccccccccc--ccCCCCcCCCCcchhHHHHHHHHHHcCCEEECCCCCHHHHHHHHHhcCCCEEEeCCchhhcCCCCC
Confidence 7 8888863210 00112335789999999999999 999999999999998 888888888888
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEEeeccccccCC--------------------
Q psy12861 199 MDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCS-------------------- 258 (292)
Q Consensus 199 ~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv~~~~~fl~~~-------------------- 258 (292)
|+||++ ||+|+++||||||||+|.||++.
T Consensus 246 -------------------Nl~De~------------l~~la~~GGVIgv~f~~~fl~~~~~~~~~~~~~~~~~~~~~~~ 294 (417)
T 3b40_A 246 -------------------NLSDHE------------MQLIKDSGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDLPPL 294 (417)
T ss_dssp -------------------SBCHHH------------HHHHHHTTCEEEEECCHHHHSCCCHHHHHHHHHHHHHTTCCCC
T ss_pred -------------------CCCHHH------------HHHHHHcCCEEEEEechhhccccchhhhhhhhhhhhhcccccc
Confidence 999999 99999999999999999999752
Q ss_pred ------------------------------------CCCCHHHHHHHHHHHHHHhCCCceeecCCCCCC
Q psy12861 259 ------------------------------------LNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291 (292)
Q Consensus 259 ------------------------------------~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG~ 291 (292)
+.+|++++++||+|+++++|+|||||||||||+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~~~Hidhi~~~~G~dhVGiGsDfDG~ 363 (417)
T 3b40_A 295 EGLDYALMPGDPIITIWPEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGIDHVGISSDFNDG 363 (417)
T ss_dssp CSSTTTSSCCCGGGGGSCHHHHHHHHHHHHHHHHTSCCCBHHHHHHHHHHHHHHHCGGGEEEECCBTTT
T ss_pred ccccccccccchhhcccchhhhhhhhhhhcccccCCCCCCHHHHHHHHHHHHHhhCCCeEEEcCCCCCC
Confidence 468999999999999999999999999999996
No 7
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=100.00 E-value=1.8e-48 Score=368.47 Aligned_cols=200 Identities=19% Similarity=0.225 Sum_probs=186.7
Q ss_pred CccchhHHhcCCcceEEEEEEeCCCCChhHHHHHHHHHHHHHHHHHHHcCCCeEEecCccchhHHhhhc--ceeeeeccc
Q psy12861 37 SHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFF--VVCSTAKGL 114 (292)
Q Consensus 37 ~~~~lprlr~Ggv~~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~d~~i~~~~~--~~~~i~l~i 114 (292)
....+||||+|+|++|+|++|.+ ++++.+++|++.++++++++|+.++++++++| |+++++ |++++ +++
T Consensus 22 ~~~~l~rl~~ggv~~~~~~~~~~------~~~~~~l~~i~~~~~~~~~~~~~~~~~~s~~d--i~~a~~~gkia~~-l~i 92 (325)
T 2i5g_A 22 NRELFEDMRKGGLTAANCTVSVW------EGFQATVNNITASNKLIRDNSDLVIPVRSTAD--IRKAKEQGKTGIL-YGF 92 (325)
T ss_dssp SHHHHHHHHHTTCCEEEEECCSS------CCHHHHHHHHHHHHHHHHHTTTTEEECSSHHH--HHHHHHTTCEEEE-EEE
T ss_pred CHHHHHHHHHcCCCEEEEEeecc------HHHHHHHHHHHHHHHHHHhCCCcEEeeCCHHH--HHHHHhcCCeEEE-EEE
Confidence 35569999999999999999742 35788999999999999999999999999999 999887 99999 999
Q ss_pred cc----------hhhHHHHHHHhhcCCCchhh-hhhhhhcchhhhhhhcccccCCCCCchhhhhhhcc------cccccC
Q psy12861 115 ED----------VSHYPDLLAALLDHPTWTET-QVKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNL------LSSFHL 177 (292)
Q Consensus 115 Eg----------l~~~~~lGvr~l~~~~~~~~-~~~~g~~~N~lr~~~~~e~~~~GLT~~Gk~vv~~m------vDlsH~ 177 (292)
|| |+.||++|||+|+ +|||.. .+++|| .+ .++|||+|||++|+|| ||+||+
T Consensus 93 Eg~~~i~~~l~~l~~~y~lGvR~~~-Lt~n~~N~~~~g~----------~~-~~~GLT~~G~~vV~emnrlGmivDlSH~ 160 (325)
T 2i5g_A 93 QNAHAFEDQIGYVEVFKQLGVGIVQ-MCYNTQNLVGTGC----------YE-RDGGLSGFGREIVAEMNRVGIMCDLSHV 160 (325)
T ss_dssp SCGGGGTTCTHHHHHHHHTTEEEEE-SCCSSBCSSCBBT----------TS-CCCCCCHHHHHHHHHHHHHTCEEECTTB
T ss_pred echhhhCCCHHHHHHHHHcCCeEEE-eeccCCCCCCCCC----------CC-CCCCCCHHHHHHHHHHHHcCcEEEcCcC
Confidence 99 9999999999999 899998 999987 34 6789999999999999 999999
Q ss_pred Cccccceee----------eeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEE
Q psy12861 178 YATGMVGAQ----------FWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVM 247 (292)
Q Consensus 178 s~~g~~da~----------~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIg 247 (292)
|+++++|++ |++++.+|+|+| |+||++ ||+|+++|||||
T Consensus 161 s~~~~~dvl~~s~~Pvi~SHsn~~al~~h~R-------------------Nl~De~------------irala~~GGvig 209 (325)
T 2i5g_A 161 GSKTSEEVILESKKPVCYSHCLPSGLKEHPR-------------------NKSDEE------------LKFIADHGGFVG 209 (325)
T ss_dssp CHHHHHHHHHHCSSCCEEEEECBTTTCCCTT-------------------SBCHHH------------HHHHHHTTCEEE
T ss_pred CHHHHHHHHHHhCCCEEEeCCCccccCCCCC-------------------CCCHHH------------HHHHHHcCCeEE
Confidence 999999998 888888888888 999999 999999999999
Q ss_pred EeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCC
Q psy12861 248 VSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGY 288 (292)
Q Consensus 248 v~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDf 288 (292)
+|++|.|+++.+++|++++++||+|+++++|+|||||||||
T Consensus 210 v~~~~~fl~~~~~~t~~~~~~hi~~i~~~~G~dhVgiGsDf 250 (325)
T 2i5g_A 210 VTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDF 250 (325)
T ss_dssp ECCCGGGSSSGGGCBHHHHHHHHHHHHHHHCTTSEEECCCB
T ss_pred EeecchhcCCCCCCCHHHHHHHHHHHHHhcCCceEEECCcC
Confidence 99999999877779999999999999999999999999999
No 8
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A {Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A* 3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Probab=98.44 E-value=1.1e-07 Score=91.81 Aligned_cols=111 Identities=23% Similarity=0.325 Sum_probs=86.1
Q ss_pred cccccCCccccceeeeeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEE-ee
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMV-SF 250 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv-~~ 250 (292)
+|+++| ++|+++++||++|++|+. .++++.|++|++.++++++.+||.+++++|++|+.++ ++=.+.+.++|+ +.
T Consensus 50 vdlprl-r~Ggv~~qf~av~v~~~~--~~a~~~~l~qid~~~~~~~~~~~~~~~~~t~~di~~~-~~~gkia~llgiEg~ 125 (400)
T 3id7_A 50 TDLARL-RSGGVGAQYWSVYVRSDL--PGAVTATLEQIDCVRRLIDRHPGELRAALTAADMEAA-RAEGRIASLMGAEGG 125 (400)
T ss_dssp CCHHHH-HHTTEEEEEEECCCCSSS--SCHHHHHHHHHHHHHHHHHHCTTTEEECCSHHHHHHH-HHHTCEEEEEEEESG
T ss_pred ccHHHH-HhcCCcEEEEEEEeCCcc--hHHHHHHHHHHHHHHHHHHHCCCcEEEeCCHHHHHHH-HHcCCeeeEEEEech
Confidence 999999 999999999999999986 5789999999999999999999999999999999983 333344556666 33
Q ss_pred ccc----------------cccCC-------------C------CCCHHHHHHHHHHHHHHhCCCceeecC
Q psy12861 251 YSL----------------YLTCS-------------L------NSSIDDVIAHLDHIKNVAGEDHVGLGA 286 (292)
Q Consensus 251 ~~~----------------fl~~~-------------~------~~~l~~~~~Hi~~i~~l~G~dHVgiGs 286 (292)
.+. |++.. + .+-..++++.++.+..++.+.|++-.+
T Consensus 126 ~~i~~~l~~L~~~y~lGvR~~tLthn~~N~~ad~~~~~~~~~GLT~fG~~vV~eMNrlGmiVDlSH~s~~t 196 (400)
T 3id7_A 126 HSIDNSLATLRALYALGVRYMTLTHNDNNAWADSATDEPGVGGLSAFGREVVREMNREGMLVDLSHVAATT 196 (400)
T ss_dssp GGGTTCHHHHHHHHHTTEEEEESCSSSCCSSBCBTTSCCCSSSBCHHHHHHHHHHHHHTCEEECTTBCHHH
T ss_pred hhhcCCHHHHHHHHHcCCeEEEeeccCCCcccccCCCCCCCCCCCHHHHHHHHHHHHcCCeEEcCCCCHHH
Confidence 332 11100 0 123468899999999888899887443
No 9
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural genomics, nysgrc, target 9523C, phosphinate inhibitor, PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB: 3fdg_A
Probab=98.34 E-value=2.4e-07 Score=88.48 Aligned_cols=75 Identities=15% Similarity=0.216 Sum_probs=64.0
Q ss_pred cccccCCccccceeeeeeccccCCCC------------------------ChhHHHHHHHHHHHHHHHHhcCCccccccc
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCSSQ------------------------HMDAVQITMEQVDVIRRFTELYSDDLKLVT 227 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~~~------------------------~~~av~~t~~q~d~v~~~~rn~pD~~~l~~ 227 (292)
+|+++| ++|+++++||++|++|+.. ..+|++.|++|+|.++++++.+|+.+++++
T Consensus 40 ~DlpRl-~~G~v~~qffa~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~qid~~~~~~~~~~~~~~~~~ 118 (364)
T 3ly0_A 40 LDLPRM-KEGGFAGGFFAIYVPSPQAHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCR 118 (364)
T ss_dssp CCHHHH-HHHTEEEEEEEECCCCSSCTTCHHHHHHHHSSSEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSEEECC
T ss_pred cCHHHH-HhcCCcEEEEEEEecCccCcccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 999999 9999999999999999762 247999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCeEEEE
Q psy12861 228 SAQGKDIGVTLMALNDGIVMV 248 (292)
Q Consensus 228 s~~~~~~~iraia~~GGvIgv 248 (292)
|++|+.++.+ =.+.+.++|+
T Consensus 119 s~~di~~~~~-~gkia~~l~i 138 (364)
T 3ly0_A 119 TAAEVRSCHA-DGIVSGIMHM 138 (364)
T ss_dssp SHHHHHHHHH-HTCEEEEEEE
T ss_pred CHHHHHHHHH-cCCeeEEEEE
Confidence 9999998433 3344455666
No 10
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET lactamase, cilastatin, complex (hydrolase-inhibitor), hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7 PDB: 1itq_A*
Probab=98.12 E-value=1.4e-06 Score=83.39 Aligned_cols=75 Identities=36% Similarity=0.628 Sum_probs=65.5
Q ss_pred cccccCCccccceeeeeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEE
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMV 248 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv 248 (292)
+|+++| ++|+++++||++|++|+.....+++.|++|++.++++++.+|+.+++++|++|+.++.+ -.+.+.++|+
T Consensus 50 ~dl~rl-~~G~v~~q~~ai~v~~~~~~~~~~~~~l~qid~~~~~~~~~~~~~~~~~s~~di~~~~~-~gkia~~l~i 124 (369)
T 1itu_A 50 TNIPKL-RAGFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFR-EGKVASLIGV 124 (369)
T ss_dssp CCHHHH-HHTTEEEEEEEECCCGGGTTTTHHHHHHHHHHHHHHHHHHCTTTEEECCSHHHHHHHHH-HTCEEEEEEE
T ss_pred ccHHHH-HhcCCcEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHHhcCCcEEEECCHHHHHHHHH-cCCcEEEEEE
Confidence 999999 99999999999999998776789999999999999999999999999999999998433 3345555555
No 11
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target 9257A, protein structure initiative; 2.00A {Caulobacter crescentus}
Probab=98.01 E-value=3.5e-06 Score=81.86 Aligned_cols=114 Identities=10% Similarity=0.069 Sum_probs=85.7
Q ss_pred ccccccCCccccceeeeeeccccCCCCCh----hHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEE
Q psy12861 171 LLSSFHLYATGMVGAQFWSAYVPCSSQHM----DAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIV 246 (292)
Q Consensus 171 mvDlsH~s~~g~~da~~ss~~~~~~~~~~----~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvI 246 (292)
.+|+++| ++|+++++||++|++|..... .+++.|++|+|.++++++.+|+.+++++|++|+.+ +++=.+.+.++
T Consensus 79 ~~dlprl-r~Ggv~~q~~si~v~~~~~~~~~~~~~~~~~l~qid~~~~~~~~~~~~~~~~~t~~di~~-~~~~Gkia~ll 156 (417)
T 2rag_A 79 QVDLPRM-NQGGLDGGFFVVYIGQGELTEKGYTYARDYALHRTIEIREMLAANPDTFEMALTSDDARR-IAKAGKKFAFV 156 (417)
T ss_dssp CCCHHHH-HHTTCCEEEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHCTTTEEECSSHHHHHH-HHHTTCEEEEE
T ss_pred cccHHHH-HhcCCcEEEEEEecCCccCCcchhhHHHHHHHHHHHHHHHHHHhCCCcEEEECCHHHHHH-HHHcCCEEEEE
Confidence 3999999 999999999999999874332 57889999999999999999999999999999998 33333444555
Q ss_pred EE-eeccc----------------cccCC------------C---------CCCHHHHHHHHHHHHHHhCCCceeecC
Q psy12861 247 MV-SFYSL----------------YLTCS------------L---------NSSIDDVIAHLDHIKNVAGEDHVGLGA 286 (292)
Q Consensus 247 gv-~~~~~----------------fl~~~------------~---------~~~l~~~~~Hi~~i~~l~G~dHVgiGs 286 (292)
|+ +..+. |++.. + .+-.+++++.++.+..++.+.|++-.+
T Consensus 157 giEg~~~i~~dl~~L~~~y~lGvR~~tLthn~~N~~adg~~~~~~~~~~GLT~~G~~vV~eMnrlGmivDlSH~s~~t 234 (417)
T 2rag_A 157 SMENSWPVGEDLSLVETFYKEGLRMAGPVHFRNNQLADSSTDPKGKIWNGYSPLGLRWLAEANRLGIVIDVSHASDDV 234 (417)
T ss_dssp EEECCGGGTTCTHHHHHHHHTTEEEEESCCSSCCSSBCBSSCTTCCSSSSBCHHHHHHHHHHHHHTCEEBCTTBCHHH
T ss_pred EeechhhhcCCHHHHHHHHHcCCeEEEccccCCCccccccCCCCCCCCCCCCHhHHHHHHHHHHcCCEEECCCCCHHH
Confidence 65 33332 11100 1 122578899999999889999887443
No 12
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc, dipeptide L-Leu-D-Ala, PSI-2, P structure initiative; HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Probab=97.91 E-value=2.8e-06 Score=79.77 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=58.6
Q ss_pred cccccCCccccceeeeeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHH
Q psy12861 172 LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDI 234 (292)
Q Consensus 172 vDlsH~s~~g~~da~~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~ 234 (292)
+|+++| ++|+++++||++|++|..+...+++.|++|++.++++.+..||.+++++|++|+.+
T Consensus 33 ~dl~rl-r~G~v~~q~~a~~v~~~~~~~~~~~~~l~qid~~~~~~~~~~~~~~~~~s~~di~~ 94 (318)
T 3neh_A 33 VNFERL-IEAKMLLQGFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLEN 94 (318)
T ss_dssp SCHHHH-HHHTEEEEEEEECCCTTSCGGGHHHHHHHHHHHHHHHTTTSTTTEEECCSHHHHHT
T ss_pred CcHHHH-HhcCCCEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhCCCcEEEECCHHHHHH
Confidence 999999 99999999999999998887789999999999999999999999999999999854
No 13
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=97.69 E-value=2.3e-05 Score=76.10 Aligned_cols=113 Identities=7% Similarity=0.074 Sum_probs=80.8
Q ss_pred ccccccCCccccceeeeeeccccCC--------CC-C----hhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHH
Q psy12861 171 LLSSFHLYATGMVGAQFWSAYVPCS--------SQ-H----MDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVT 237 (292)
Q Consensus 171 mvDlsH~s~~g~~da~~ss~~~~~~--------~~-~----~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~ir 237 (292)
.+|+++| ++|+++++||++|++.. +. . ..++..+++|+|.++++++.+||.+++++|++|+.+ ++
T Consensus 49 ~vDlprl-r~Ggv~~qf~avyv~p~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~l~~t~~di~~-~~ 126 (417)
T 3b40_A 49 QLDLVKA-GRGRLSGAALAIFGWPEMWNGPNAPHKPTPGFVDEARHQQEIRYKILTGMVRDFPNQVGIAYSPEDFRR-LA 126 (417)
T ss_dssp SCCHHHH-HHHTCCEEEEEEECCCCCC-----CCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTTEEECSSHHHHHH-HH
T ss_pred cccHHHH-HccCCcEEEEEEEccchhcccccccccccchhhhHHHHHHHHHHHHHHHHHHHCCCcEEEeCCHHHHHH-HH
Confidence 3999999 99999999999999422 11 1 136667899999999999999999999999999998 33
Q ss_pred HHHhCCeEEEE-eeccc----------------cccCC---------C-----------------CCCHHHHHHHHHHHH
Q psy12861 238 LMALNDGIVMV-SFYSL----------------YLTCS---------L-----------------NSSIDDVIAHLDHIK 274 (292)
Q Consensus 238 aia~~GGvIgv-~~~~~----------------fl~~~---------~-----------------~~~l~~~~~Hi~~i~ 274 (292)
+=.+.+.++|+ +..+. |++.. + .+-.+++++.++.+.
T Consensus 127 ~~Gkia~~lgiEg~~~i~~dl~~L~~~y~lGvR~~tLthn~~N~~ads~~~~~~~~~~~~~~~GLT~~G~~vV~eMNrlG 206 (417)
T 3b40_A 127 MEGKFAIVMSMLNAYPLGDDLSQLDKWAARGVRMFGFSYVGNNDWADSSRPLPFFNDSPDALGGLSPLGKQAVERLNDLG 206 (417)
T ss_dssp HTTCEEEEEEEECSGGGTTCTHHHHHHHHTTCCEEECCSSSCCSSBCBSSCCGGGTCCTTTTSSBCHHHHHHHHHHHHHT
T ss_pred HcCCEEEEEEeecchhhcCCHHHHHHHHHcCCcEEEecccCCCccccccccccccCCCCcCCCCcchhHHHHHHHHHHcC
Confidence 33344455555 33332 11100 0 012577888888888
Q ss_pred HHhCCCceeec
Q psy12861 275 NVAGEDHVGLG 285 (292)
Q Consensus 275 ~l~G~dHVgiG 285 (292)
.++.+.|++-.
T Consensus 207 miVDlSH~s~~ 217 (417)
T 3b40_A 207 VIIDVSQMSTK 217 (417)
T ss_dssp CEEECTTBCHH
T ss_pred CEEECCCCCHH
Confidence 88888888643
No 14
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics, protein structure initiative; 2.60A {Pseudomonas aeruginosa}
Probab=95.27 E-value=0.0087 Score=56.05 Aligned_cols=67 Identities=13% Similarity=0.015 Sum_probs=52.3
Q ss_pred cccCCccccceeeeeeccccCCCCChhHHHHHHHHHHHHHHHHhcCCcccccccccccHHHHHHHHHhCCeEEEE
Q psy12861 174 SFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMV 248 (292)
Q Consensus 174 lsH~s~~g~~da~~ss~~~~~~~~~~~av~~t~~q~d~v~~~~rn~pD~~~l~~s~~~~~~~iraia~~GGvIgv 248 (292)
+++| ++|++++++++++. ..++..|++|++.++++.+.+|+.+++++|++|+.+ .++=.+.+.++|+
T Consensus 26 l~rl-~~ggv~~~~~~~~~------~~~~~~~l~~i~~~~~~~~~~~~~~~~~~s~~di~~-a~~~gkia~~l~i 92 (325)
T 2i5g_A 26 FEDM-RKGGLTAANCTVSV------WEGFQATVNNITASNKLIRDNSDLVIPVRSTADIRK-AKEQGKTGILYGF 92 (325)
T ss_dssp HHHH-HHTTCCEEEEECCS------SCCHHHHHHHHHHHHHHHHHTTTTEEECSSHHHHHH-HHHTTCEEEEEEE
T ss_pred HHHH-HHcCCCEEEEEeec------cHHHHHHHHHHHHHHHHHHhCCCcEEeeCCHHHHHH-HHhcCCeEEEEEE
Confidence 6677 89999999988763 134778999999999999999999999999999998 3322233444455
No 15
>2vc7_A Aryldialkylphosphatase; phosphotriesterase, promiscuous activities, enzyme evolution, hyperthermophilic, lactonase, hydrolase; HET: KCX GOL HT5; 2.05A {Sulfolobus solfataricus} PDB: 2vc5_A*
Probab=51.49 E-value=37 Score=29.73 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q psy12861 231 GKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYD 289 (292)
Q Consensus 231 ~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfD 289 (292)
+... ++.+++.|..|+++..+. ++ ..+.+...+++.++.+....|++-++||+.
T Consensus 205 ~~~~-~~~~~~~G~~i~~~~~~~-~~---~~~~~~~~~~i~~~~~~g~~drilleTD~~ 258 (314)
T 2vc7_A 205 NIDY-IKKIADKGSFIGLDRYGL-DL---FLPVDKRNETTLRLIKDGYSDKIMISHDYC 258 (314)
T ss_dssp CHHH-HHHHHHTTCEEEECCTTC-TT---TSCHHHHHHHHHHHHHTTCTTTEEECCCCB
T ss_pred CHHH-HHHHHHcCCEEEEeCCCc-cc---CCCHHHHHHHHHHHHHcCCCCeEEEcCCcc
Confidence 3455 788889999999986432 11 124567788888877765669999999984
No 16
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.79 E-value=61 Score=24.32 Aligned_cols=64 Identities=16% Similarity=0.129 Sum_probs=43.3
Q ss_pred HHhcCCcc-cccccccccHHHHHHHHHhCCeEEE--Eeeccc-----cccC--C--------CCCCHHHHHHHHHHHHHH
Q psy12861 215 FTELYSDD-LKLVTSAQGKDIGVTLMALNDGIVM--VSFYSL-----YLTC--S--------LNSSIDDVIAHLDHIKNV 276 (292)
Q Consensus 215 ~~rn~pD~-~~l~~s~~~~~~~iraia~~GGvIg--v~~~~~-----fl~~--~--------~~~~l~~~~~Hi~~i~~l 276 (292)
-.-|+|.. ++-++|.+|+++.|+.+.++|--.- +|..+. |-.. + ...+++++.+-+.-..+.
T Consensus 22 akhnypgryirtatssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflkt 101 (112)
T 2lnd_A 22 AKHNYPGRYIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKT 101 (112)
T ss_dssp HHHHSCTTTEEEECSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHH
T ss_pred hhcCCCCceeeeccchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHh
Confidence 34489988 7889999999999999998887433 333321 1100 0 135778888877777777
Q ss_pred hC
Q psy12861 277 AG 278 (292)
Q Consensus 277 ~G 278 (292)
+|
T Consensus 102 ag 103 (112)
T 2lnd_A 102 AG 103 (112)
T ss_dssp TT
T ss_pred cc
Confidence 77
No 17
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural TIM-barrel fold, putative lactonase; 1.70A {Burkholderia multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Probab=41.20 E-value=27 Score=30.90 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHHhCCCceeecCCCC
Q psy12861 262 SIDDVIAHLDHIKNVAGEDHVGLGAGYD 289 (292)
Q Consensus 262 ~l~~~~~Hi~~i~~l~G~dHVgiGsDfD 289 (292)
+.+++..-++++.+.+|.|+|-+||||-
T Consensus 219 ~~~~~~~~~~~~~~~~G~dri~fgSD~P 246 (303)
T 4do7_A 219 DLRHIEQCLDAALDAFGPQRLMFGSDWP 246 (303)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEECCCBT
T ss_pred CHHHHHHHHHHHHHHhCcccEEEeCCCC
Confidence 4567778889999999999999999984
No 18
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=36.44 E-value=43 Score=29.95 Aligned_cols=53 Identities=19% Similarity=0.128 Sum_probs=37.1
Q ss_pred ccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q psy12861 228 SAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLG 285 (292)
Q Consensus 228 s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiG 285 (292)
+.+++.++++.+.+.|=-+++.+ +-.-+..+.+++.++++++.++ |++++++.
T Consensus 176 ~~~~~~~~i~~~~~~Gi~v~~~~----i~G~p~et~e~~~~~~~~l~~l-~~~~i~i~ 228 (348)
T 3iix_A 176 SFENRLNCLLTLKELGYETGAGS----MVGLPGQTIDDLVDDLLFLKEH-DFDMVGIG 228 (348)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECB----EESCTTCCHHHHHHHHHHHHHH-TCSEECCE
T ss_pred CHHHHHHHHHHHHHhCCeeccce----EEeCCCCCHHHHHHHHHHHHhc-CCCEEeee
Confidence 56667777888877764344333 2222346899999999998887 78888775
No 19
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=30.97 E-value=79 Score=26.65 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=33.8
Q ss_pred HHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHH-HHHHHHhCCCc
Q psy12861 234 IGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHL-DHIKNVAGEDH 281 (292)
Q Consensus 234 ~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi-~~i~~l~G~dH 281 (292)
++++.+.+. |++-+-+.+.|... ..+++++++++ ..+.+..|++|
T Consensus 136 ~N~~~L~~~-G~~ivpp~~g~~~~--p~si~div~~~v~~~ld~~~i~~ 181 (189)
T 2ejb_A 136 ENMLKITRM-GGVVVPASPAFYHK--PQSIDDMINFVVGKLLDVLRIEH 181 (189)
T ss_dssp HHHHHHHHT-TCEEEECCCCSTTC--CCSHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHC-CeEEeCCChHHhhC--CCCHHHHHHHHHHHHHHhCCCCc
Confidence 347888777 56667777777653 47999999876 56888999976
No 20
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=29.82 E-value=53 Score=28.30 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=33.5
Q ss_pred HHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHH-HHHHHhCCCce
Q psy12861 234 IGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLD-HIKNVAGEDHV 282 (292)
Q Consensus 234 ~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~-~i~~l~G~dHV 282 (292)
++++.+.+.|. +-+-..|.|+.. ..+++|+++|+- .+.+..|++|-
T Consensus 149 ~Nm~~L~~~G~-~iipp~~g~ya~--p~~iediv~~vv~r~ld~lgi~~~ 195 (209)
T 3zqu_A 149 ENMLKLSNLGA-VILPAAPGFYHQ--PQSVEDLVDFVVARILNTLGIPQD 195 (209)
T ss_dssp HHHHHHHHHTC-EECCSCCCCTTC--CCSHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHCCC-EEeCCCcccccC--CCCHHHHHHHHHHHHHHhCCCCCC
Confidence 34777777654 555667777764 379999999765 77888899873
No 21
>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} SCOP: c.1.9.3
Probab=26.23 E-value=1.6e+02 Score=24.95 Aligned_cols=55 Identities=15% Similarity=0.021 Sum_probs=38.0
Q ss_pred ccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q psy12861 230 QGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYD 289 (292)
Q Consensus 230 ~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfD 289 (292)
.+... ++.+++.|..|+++.... ++. .+-..-.+.+..+++.++.|++-+|||+-
T Consensus 190 ~~~~~-~~~~~~~G~~i~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~dril~~TD~p 244 (291)
T 1bf6_A 190 DNLDN-ILKMIDLGAYVQFDTIGK-NSY---YPDEKRIAMLHALRDRGLLNRVMLSMDIT 244 (291)
T ss_dssp CCHHH-HHHHHHTTCEEEECCTTC-TTT---SCHHHHHHHHHHHHHTTCGGGEEECCCCC
T ss_pred CCHHH-HHHHHHCCCEEEEccCcc-cCC---CCHHHHHHHHHHHHHhCCCCeEEEcCCCC
Confidence 44555 777888999999975421 110 12344566777888888899999999984
No 22
>2ffi_A 2-pyrone-4,6-dicarboxylic acid hydrolase, putativ; TIM-barrel protein., structural genomics, PSI, protein struc initiative; 2.61A {Pseudomonas putida} SCOP: c.1.9.15
Probab=24.78 E-value=51 Score=28.34 Aligned_cols=54 Identities=13% Similarity=0.060 Sum_probs=34.0
Q ss_pred HHHHHhCCeE-EEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCCC
Q psy12861 236 VTLMALNDGI-VMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDG 290 (292)
Q Consensus 236 iraia~~GGv-Igv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfDG 290 (292)
++.+++..++ +.++....+-. ....+..+....+..+++.+|.|++-+||||--
T Consensus 185 ~~~l~~~~n~y~~~sg~~~~~~-~~~~~~~~~~~~~~~~~~~~g~drll~gSD~P~ 239 (288)
T 2ffi_A 185 LLTLSGRGKVWVKVSGIYRLQG-SPEENLAFARQALCALEAHYGAERLMWGSDWPH 239 (288)
T ss_dssp HTTCCCCSCEEEEEECGGGSSS-CHHHHHHHHHHHHHHHHHHTCGGGEEEECCTTC
T ss_pred HHHHHhCCCEEEEeCcchhhcc-ccCCCHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence 5555555444 56654332211 001223556678899999999999999999953
No 23
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}
Probab=23.31 E-value=1.1e+02 Score=27.39 Aligned_cols=52 Identities=15% Similarity=0.080 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHhCCeEEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeec
Q psy12861 228 SAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLG 285 (292)
Q Consensus 228 s~~~~~~~iraia~~GGvIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiG 285 (292)
+.++..++++.+.+.|=-+...+...+ .-+.+++++|++.+.++ ++++|++.
T Consensus 186 ~~~~~l~~i~~a~~~Gi~v~~~~i~Gl-----get~e~~~~~l~~l~~l-~~~~v~~~ 237 (350)
T 3t7v_A 186 SFDGRVNARRFAKQQGYCVEDGILTGV-----GNDIESTILSLRGMSTN-DPDMVRVM 237 (350)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEEESS-----SCCHHHHHHHHHHHHHT-CCSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEccceEeec-----CCCHHHHHHHHHHHHhC-CCCEEEec
Confidence 455666667777777655555444333 25899999999998876 78888874
No 24
>3ij6_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structure initiative; 2.00A {Lactobacillus acidophilus}
Probab=22.81 E-value=3.2e+02 Score=24.09 Aligned_cols=54 Identities=2% Similarity=0.088 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccc--ccccc----ccHHHHHHHHHhCCeEEEEeecccc
Q psy12861 201 AVQITMEQVDVIRRFTELYSDDLK--LVTSA----QGKDIGVTLMALNDGIVMVSFYSLY 254 (292)
Q Consensus 201 av~~t~~q~d~v~~~~rn~pD~~~--l~~s~----~~~~~~iraia~~GGvIgv~~~~~f 254 (292)
+...+-..-+.+-+.++.+||.+. ++.-+ +...+-|+.+++..|+.|+.+.+.+
T Consensus 75 ~~~~~r~~N~~l~~~~~~~p~rf~g~~a~vp~~~~~~a~~el~r~~~~~G~~Gv~l~~~~ 134 (312)
T 3ij6_A 75 SAELCQSANEELSNLVDQHPGKFAGAVAILPMNNIESACKVISSIKDDENLVGAQIFTRH 134 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTTEEEEEEECCTTCHHHHHHHHHHHHHCTTEEEEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCceeeeEEecCccCHHHHHHHHHHHHHhCCCceEeccCCC
Confidence 333333445667788889999875 44433 1222226666677899999887653
No 25
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=20.12 E-value=2e+02 Score=25.02 Aligned_cols=52 Identities=12% Similarity=-0.024 Sum_probs=33.1
Q ss_pred HHHHHhCCe-EEEEeeccccccCCCCCCHHHHHHHHHHHHHHhCCCceeecCCCC
Q psy12861 236 VTLMALNDG-IVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYD 289 (292)
Q Consensus 236 iraia~~GG-vIgv~~~~~fl~~~~~~~l~~~~~Hi~~i~~l~G~dHVgiGsDfD 289 (292)
+..+++.++ .|.++....+- ............+..+.+.+|.|++=+||||-
T Consensus 198 ~~~l~~~~nv~~k~Sg~~~~~--~~~~~~~~~~~~l~~~~~~~g~dRll~gSD~P 250 (294)
T 4i6k_A 198 FLSLLNVKQHWIKVSGFYRLG--ATPSNINIAQQAYNIFKEKGFLHKLIWGSDWP 250 (294)
T ss_dssp HHHHCCTTTEEEECCCGGGSS--STTHHHHHHHHHHHHHHHHTCGGGEECCCCBT
T ss_pred HHHHHhCCCEEEEeccccccc--ccCCCchhhHHHHHHHHHHhCcccEEEeCCCC
Confidence 666666644 45554432221 11123345567788899999999999999984
Done!