RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12861
(292 letters)
>gnl|CDD|216386 pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family
M19).
Length = 316
Score = 86.5 bits (215), Expect = 1e-19
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 14/96 (14%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
HNDLP + + N L S HTDL RLR G VGAQF++ +VPC
Sbjct: 11 HNDLPLRLWQEGDNILFE--------------GDSGLHTDLERLRAGGVGAQFFAIFVPC 56
Query: 61 SSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
+Q+ DAVQ T+EQ+D+ RR + L+LV +A
Sbjct: 57 DAQYEDAVQATLEQIDIFRRLVRKNPEQLRLVRTAD 92
Score = 74.6 bits (184), Expect = 2e-15
Identities = 26/56 (46%), Positives = 41/56 (73%), Gaps = 2/56 (3%)
Query: 238 LMAL--NDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291
L A+ + G++ V+FY +L N++IDDV+ H+D+I ++AG DHVGLG+ +DGI
Sbjct: 217 LKAIAESGGVIGVNFYPAFLKPDANATIDDVVDHIDYIVDLAGIDHVGLGSDFDGI 272
Score = 62.6 bits (153), Expect = 3e-11
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 181 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 230
G VGAQF++ +VPC +Q+ DAVQ T+EQ+D+ RR + L+LV +A
Sbjct: 43 GGVGAQFFAIFVPCDAQYEDAVQATLEQIDIFRRLVRKNPEQLRLVRTAD 92
Score = 53.0 bits (128), Expect = 5e-08
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 110 TAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVL 150
+GLEDVS P+L A LL ++E +++K+ G N+LRVL
Sbjct: 275 NPEGLEDVSKLPNLTAELLRR-GYSEAEIEKILGGNWLRVL 314
>gnl|CDD|238626 cd01301, rDP_like, renal dipeptidase (rDP), best studied in
mammals and also called membrane or microsomal
dipeptidase, is a membrane-bound glycoprotein
hydrolyzing dipeptides and is involved in hydrolytic
metabolism of penem and carbapenem beta-lactam
antibiotics. Although the biological function of the
enzyme is still unknown, it has been suggested to play
a role in the renal glutathione metabolism.
Length = 309
Score = 72.7 bits (179), Expect = 1e-14
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
HNDL + +R+ + ++K + H DLPRLR+G VG Q ++ +VP
Sbjct: 6 HNDLLYRLRREGKDF---------------FTKDAGGHVDLPRLREGGVGGQVFAIFVPP 50
Query: 61 SSQ---HMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
+DA++ +EQ+D +RR Y L TS+
Sbjct: 51 GELQPTWLDALERALEQIDRVRRLIAAYPRIFVLATSSA 89
Score = 70.4 bits (173), Expect = 6e-14
Identities = 21/51 (41%), Positives = 37/51 (72%)
Query: 242 NDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292
G++ V+FY +L+ ++++DDV+ H+D+I ++ G DHVGLG+ +DGI
Sbjct: 219 TGGVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGSDFDGIG 269
Score = 50.7 bits (122), Expect = 3e-07
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 14/105 (13%)
Query: 45 RKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVF 104
G++G F+ A++ + + + +D I + V G D F
Sbjct: 219 TGGVIGVNFYPAFLSPGAD--ATLDDVVRHIDYIVDLI-----GIDHV--GLGSD----F 265
Query: 105 FVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRV 149
+ T GLEDVS P+L A LL+ ++E +++K+AG NFLRV
Sbjct: 266 DGIGGTPGGLEDVSDLPNLTAELLER-GYSEEEIEKIAGGNFLRV 309
Score = 48.4 bits (116), Expect = 2e-06
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 180 TGMVGAQFWSAYVPCSSQ---HMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 230
G VG Q ++ +VP +DA++ +EQ+D +RR Y L TS+
Sbjct: 36 EGGVGGQVFAIFVPPGELQPTWLDALERALEQIDRVRRLIAAYPRIFVLATSSA 89
>gnl|CDD|225230 COG2355, COG2355, Zn-dependent dipeptidase, microsomal dipeptidase
homolog [Amino acid transport and metabolism].
Length = 313
Score = 59.7 bits (145), Expect = 2e-10
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 239 MALNDGIVMVSFYSLYLTCSLN--SSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292
+A G++ V+F +L +++DD++ H+DH + G DHVGLG+ +DG
Sbjct: 211 IAETGGVIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGSDFDGGT 266
Score = 48.5 bits (116), Expect = 1e-06
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 112 KGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQE 156
GLEDV P+L AAL++ ++E +++K+AG N+LRVL + E
Sbjct: 270 DGLEDVGKLPNLTAALIER-GYSEEEIEKIAGENWLRVLKEVWGE 313
>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated.
Length = 177
Score = 28.6 bits (65), Expect = 2.5
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 21/97 (21%)
Query: 124 LAALLDHPTWTETQVKKL----------AGLNFLRVLSKAEQESGRLS--PNATRVYSNL 171
LAALL P + Q KKL NFL+VL+ E+GRL+ P + L
Sbjct: 44 LAALLSSPLVSAEQKKKLLAAVFKSLSEYVQNFLKVLA----ENGRLALLPEILEQFEAL 99
Query: 172 LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQ 208
+ +V A+ SA+ P S + +D ++ +E+
Sbjct: 100 RAEHE----NIVDAEVTSAF-PLSEEQLDKLKAALEK 131
>gnl|CDD|237117 PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.
Length = 1310
Score = 29.5 bits (67), Expect = 2.6
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 19/61 (31%)
Query: 122 DLLA---ALLDHPTWTETQVKKLAG-------LNFLR--VLSKAEQESGRLSPNATRVYS 169
DL ALLD Q KLA +NF+R L +AE+ L ATRV+S
Sbjct: 1022 DLFINQMALLD-------QAVKLAAEADEPLEMNFVRKHALEQAEELGISLREAATRVFS 1074
Query: 170 N 170
N
Sbjct: 1075 N 1075
>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial
oligomycin sensitivity protein) [Energy production and
conversion].
Length = 178
Score = 28.4 bits (64), Expect = 3.3
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 22/98 (22%)
Query: 124 LAALLDHPTWTETQVKKL-----------AGLNFLRVLSKAEQESGRLS--PNATRVYSN 170
L LL P + K+L NFLR+L+ E+ RL+ P +
Sbjct: 45 LKQLLSSPAVSAEDKKELLISIFKKIGDPLLQNFLRLLA----ENKRLNLLPEILEEFLK 100
Query: 171 LLSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQ 208
L + G+V A+ SA+ S + + ++ +E+
Sbjct: 101 LAAESR----GIVEAEVTSAF-ELSDEQLTKLEAKLEK 133
>gnl|CDD|191750 pfam07467, BLIP, Beta-lactamase inhibitor (BLIP). The structure of
BLIP reveals two structural domains, which form a polar,
concave surface that docks onto a predominantly polar,
convex protrusion on beta-lactamase. The ability of BLIP
to adapt to a variety of class A beta-lactamases is
thought to be due to flexibility between these two
domains.
Length = 156
Score = 28.4 bits (63), Expect = 3.4
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 172 LSSFHLYATGMVGAQFWSAYVP---CSSQ 197
L+ ++ GM AQ W+A VP C++
Sbjct: 82 LAKYNQTTVGMTEAQVWAA-VPQDSCTTW 109
>gnl|CDD|182904 PRK11020, PRK11020, hypothetical protein; Provisional.
Length = 118
Score = 27.3 bits (61), Expect = 4.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 137 QVKKLAGLNFLRVLSKAEQ 155
+ +KL L F R ++K EQ
Sbjct: 61 EAQKLMKLPFSRAITKKEQ 79
>gnl|CDD|221296 pfam11894, DUF3414, Protein of unknown function (DUF3414). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 764 to 2011 amino acids in
length. This protein has a conserved LLG sequence motif.
Length = 1612
Score = 28.4 bits (64), Expect = 6.1
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 254 YLTCSLNSSIDDVIAHLDHIKNVAGEDHV 282
L+ + DD++ LDH+K + D +
Sbjct: 220 GLSKQSGLTRDDILKLLDHLKKLERNDFL 248
>gnl|CDD|151029 pfam10456, BAR_3_WASP_bdg, WASP-binding domain of Sorting nexin
protein. The C-terminal region of the Sorting nexin
group of proteins appears to carry a BAR-like
(Bin/amphiphysin/Rvs) domain. This domain is very
diverse and the similarities with other BAR domains are
few. In the Sorting nexins it is associated with family
PX, pfam00787.13, and in combination with PX appears to
be necessary to bind WASP along with p85 to form a
multimeric signalling complex.
Length = 237
Score = 27.8 bits (62), Expect = 6.5
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 48 MVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLV 92
+VGA F+ + +D ++ +V+ +RFT+ + +K++
Sbjct: 17 LVGANFFLTIEVPEAPPLDLQEVEQ-KVEGFKRFTKKMDEGVKVL 60
Score = 27.8 bits (62), Expect = 6.5
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 182 MVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLV 226
+VGA F+ + +D ++ +V+ +RFT+ + +K++
Sbjct: 17 LVGANFFLTIEVPEAPPLDLQEVEQ-KVEGFKRFTKKMDEGVKVL 60
>gnl|CDD|180677 PRK06740, PRK06740, histidinol-phosphatase; Validated.
Length = 331
Score = 27.8 bits (62), Expect = 6.6
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Query: 247 MVSFYSLY---LTCSLNSSIDDVIAHLDHIK 274
+ + Y + + C++ S + D+IAHLD+IK
Sbjct: 196 LYALYDTFFKTVECAIRSELFDIIAHLDNIK 226
>gnl|CDD|227500 COG5173, SEC6, Exocyst complex subunit SEC6 [Intracellular
trafficking and secretion].
Length = 742
Score = 27.6 bits (61), Expect = 9.3
Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 213 RRFTELYSDDLKLVTSAQGKDIGV-TLMALNDGIV--------MVSFY-SLYLTCSLNSS 262
++ ++ L + G + + +L+ V +V Y S+ +TC +S+
Sbjct: 43 AEISKCLNNILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSN 102
Query: 263 IDDVIAHLDHIKNVAGED 280
+ +V+ D I+++ G
Sbjct: 103 LCNVVEFSDRIEDILGTV 120
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 27.5 bits (61), Expect = 9.7
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 218 LYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVA 277
++ D + G+ + VT + DG+ S+Y+ +L+ S DV A L
Sbjct: 125 VFGDLFDSLALRGGQPLRVTALGTLDGLSNALTGSVYIPRALDVSDPDVFAVLYLAAAGC 184
Query: 278 GE----DHVGLGAG 287
G D + L A
Sbjct: 185 GATVVTDVLELDAN 198
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,753,321
Number of extensions: 1371311
Number of successful extensions: 1170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1161
Number of HSP's successfully gapped: 23
Length of query: 292
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 196
Effective length of database: 6,679,618
Effective search space: 1309205128
Effective search space used: 1309205128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)