RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12861
(292 letters)
>1itu_A Renal dipeptidase; glycoprotein, membrane-bound, zinc protease BET
lactamase, cilastatin, complex (hydrolase-inhibitor),
hydro; HET: NAG CIL; 2.00A {Homo sapiens} SCOP: c.1.9.7
PDB: 1itq_A*
Length = 369
Score = 113 bits (285), Expect = 2e-29
Identities = 37/96 (38%), Positives = 56/96 (58%), Gaps = 8/96 (8%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
HNDLPW + +N L + + + + +HT++P+LR G VG QFWS Y PC
Sbjct: 20 HNDLPWQLLDMFNNRLQDERAN--------LTTLAGTHTNIPKLRAGFVGGQFWSVYTPC 71
Query: 61 SSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
+Q+ DAV+ T+EQ+DV+ R +Y + VTS+
Sbjct: 72 DTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSA 107
Score = 82.4 bits (204), Expect = 4e-18
Identities = 24/55 (43%), Positives = 36/55 (65%)
Query: 238 LMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292
L+ D +VMV+FY+ Y++C+ +++ V HLDHIK VAG VG G +DG+
Sbjct: 239 LVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGVP 293
Score = 72.8 bits (179), Expect = 8e-15
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 181 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 230
G VG QFWS Y PC +Q+ DAV+ T+EQ+DV+ R +Y + VTS+
Sbjct: 58 GFVGGQFWSVYTPCDTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSA 107
Score = 66.2 bits (162), Expect = 1e-12
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Query: 45 RKGMVGAQFWSAYVPCSSQHMDAVQITMEQV-DVIRRFTELYSDDLKLVTSAQGKDILIV 103
+V F++ Y+ C+++ + QV D + E+ G D
Sbjct: 243 TDSLVMVNFYNNYISCTNKA------NLSQVADHLDHIKEVAGAR----AVGFGGD---- 288
Query: 104 FFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLS 161
F V +GLEDVS YPDL+A LL WTE +VK N LRV EQ S
Sbjct: 289 FDGVPRVPEGLEDVSKYPDLIAELLRR-NWTEAEVKGALADNLLRVFEAVEQASNLTQ 345
>3id7_A Dipeptidase; streptomyces coelicolor A3(2), hydrolase; 1.30A
{Streptomyces coelicolor} PDB: 3isi_X* 3itc_A* 3k5x_A*
3s2j_A* 3s2l_A* 3s2m_A* 3s2n_A*
Length = 400
Score = 104 bits (260), Expect = 1e-25
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
HNDLPW +R+ + L ++++D +S+ HTDL RLR G VGAQ+WS YV
Sbjct: 20 HNDLPWALREQVRYDLDARDIAAD--------QSAHLHTDLARLRSGGVGAQYWSVYVRS 71
Query: 61 SSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
AV T+EQ+D +RR + + +L+ +A
Sbjct: 72 --DLPGAVTATLEQIDCVRRLIDRHPGELRAALTAA 105
Score = 64.8 bits (158), Expect = 5e-12
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 39/94 (41%)
Query: 238 LMALNDGIVMVSFYSLYLTCSLNS------------------------------------ 261
++ N G+ MV+F ++ +
Sbjct: 232 RLSANGGMAMVTFVPKFVLQAAVDWTAEADDNMRAHGFHHLDSSPEAMKVHAAFEERVPR 291
Query: 262 ---SIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292
++ V HLDH++ VAG DH+G+G YDG
Sbjct: 292 PVATVSTVADHLDHMREVAGVDHLGIGGDYDGTP 325
Score = 64.4 bits (157), Expect = 7e-12
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 109 STAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLS 161
T GL DVS YP+L+A LLD W+++ + KL N +RVL AE S L
Sbjct: 326 FTPDGLGDVSGYPNLIAELLDR-GWSQSDLAKLTWKNAVRVLDAAEDVSRGLR 377
Score = 64.0 bits (156), Expect = 8e-12
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 181 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 230
G VGAQ+WS YV AV T+EQ+D +RR + + +L+ +A
Sbjct: 58 GGVGAQYWSVYVRS--DLPGAVTATLEQIDCVRRLIDRHPGELRAALTAA 105
>2rag_A Dipeptidase; aminohydrolase, structural genomics, NYSGXRC, target
9257A, protein structure initiative; 2.00A {Caulobacter
crescentus}
Length = 417
Score = 101 bits (254), Expect = 8e-25
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 15/100 (15%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
H D P + + + + + D +S DLPR+ +G + F+ Y+
Sbjct: 53 HLDTPAHFGRPGWDIADHHEVEHD-----------FSQVDLPRMNQGGLDGGFFVVYIGQ 101
Query: 61 SS----QHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
+ A + + IR D ++ ++
Sbjct: 102 GELTEKGYTYARDYALHRTIEIREMLAANPDTFEMALTSD 141
Score = 65.2 bits (159), Expect = 3e-12
Identities = 10/50 (20%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 112 KGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLS 161
G ED++ P + A L +++ ++ + N LR++ A+ + ++
Sbjct: 368 DGFEDITDLPKITARLKAEG-YSDADIEAIWSGNVLRIVDAAQAYAKSVT 416
Score = 64.4 bits (157), Expect = 6e-12
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 181 GMVGAQFWSAYVPCSS----QHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 230
G + F+ Y+ + A + + IR D ++ ++
Sbjct: 88 GGLDGGFFVVYIGQGELTEKGYTYARDYALHRTIEIREMLAANPDTFEMALTSD 141
Score = 60.2 bits (146), Expect = 1e-10
Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 41/95 (43%)
Query: 238 LMALNDGIVMVSFYSLYLTCSLNS------------------------------------ 261
+A G + ++ L T
Sbjct: 270 KIADAGGAICINSIYLTDTTPSPERKAALEALGRAPDMKTATPEAVKAYADKRAAIDKAH 329
Query: 262 -----SIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291
D + + H+ VAG V +GA +DG
Sbjct: 330 PAARGDFDLYMKSMLHVLKVAGPKGVCVGADWDGG 364
>3neh_A Renal dipeptidase family protein; structural genomics, nysgrc,
dipeptide L-Leu-D-Ala, PSI-2, P structure initiative;
HET: L3A; 1.64A {Listeria monocytogenes} PDB: 3lu2_A
Length = 318
Score = 98.1 bits (245), Expect = 5e-24
Identities = 9/97 (9%), Positives = 29/97 (29%), Gaps = 14/97 (14%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
H D + ++ + + + + RL + + Q ++ ++
Sbjct: 9 HCDALYKLQAGKGKYT--------------FQDAEELDVNFERLIEAKMLLQGFAIFLDE 54
Query: 61 SSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQG 97
+ +EQV++ ++ + V
Sbjct: 55 DIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCD 91
Score = 82.3 bits (204), Expect = 3e-18
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 238 LMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292
M +D ++ V FY L+ T + + +DVI H+DHI + G ++G G+ +DGI
Sbjct: 214 AMIEHDAMIHVVFYPLFTTNNGVADTEDVIRHIDHICELGGLKNIGFGSDFDGIP 268
Score = 68.0 bits (167), Expect = 2e-13
Identities = 5/51 (9%), Positives = 17/51 (33%)
Query: 181 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQG 231
+ Q ++ ++ + +EQV++ ++ + V
Sbjct: 41 AKMLLQGFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCD 91
Score = 59.6 bits (145), Expect = 2e-10
Identities = 26/114 (22%), Positives = 36/114 (31%), Gaps = 17/114 (14%)
Query: 45 RKGMVGAQFWSAYVPCSSQHMDAVQITMEQV-DVIRRFTELYSDDLKLVTSAQGKDILIV 103
M+ F+ + + E V I EL G D
Sbjct: 218 HDAMIHVVFYPLFTTNNGVA------DTEDVIRHIDHICELGGLK----NIGFGSD---- 263
Query: 104 FFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQES 157
F + KGLE V Y L L H +T+ +++ A NFL L K
Sbjct: 264 FDGIPDHVKGLEHVGKYQSFLETLEKH--YTKEEIEGFASRNFLNHLPKEGHHH 315
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 89.6 bits (222), Expect = 2e-20
Identities = 7/109 (6%), Positives = 25/109 (22%), Gaps = 29/109 (26%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
+P + + K DL + +G + + +
Sbjct: 28 RITVPLDFGTTGNE----------------VDKDGPGQLDLVKAGRGRLSGAALAIFGWP 71
Query: 61 SSQHM-------------DAVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
+ +A + ++ + + + + S +
Sbjct: 72 EMWNGPNAPHKPTPGFVDEARHQQEIRYKILTGMVRDFPNQVGIAYSPE 120
Score = 61.8 bits (150), Expect = 4e-11
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 112 KGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLS 161
G +DVS ++ A L+ +++ + KL G NFLR + ++ + +
Sbjct: 367 DGWKDVSEIRNVTAELITR-GYSDADIAKLWGGNFLRAWGEVQKRAKPTA 415
Score = 58.4 bits (141), Expect = 7e-10
Identities = 3/63 (4%), Positives = 16/63 (25%), Gaps = 13/63 (20%)
Query: 181 GMVGAQFWSAYVPCSSQHM-------------DAVQITMEQVDVIRRFTELYSDDLKLVT 227
G + + + + +A + ++ + + + +
Sbjct: 58 GRLSGAALAIFGWPEMWNGPNAPHKPTPGFVDEARHQQEIRYKILTGMVRDFPNQVGIAY 117
Query: 228 SAQ 230
S +
Sbjct: 118 SPE 120
Score = 56.4 bits (136), Expect = 2e-09
Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 181 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTS-AQGKDIGVTLM 239
G++ + AY+ S+ T++++D +R L+ + D +T+
Sbjct: 260 GVIQVVGFPAYLRPLSKP------TLDKLDALRAR--FDLPPLEGLDYALMPGDPIITIW 311
Query: 240 ALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291
S L + + +++ +D+ G DHVG+ + ++
Sbjct: 312 PEQRFGEYASALYGILEEEPKAGLKELVDAIDYTVKKVGIDHVGISSDFNDG 363
Score = 53.0 bits (127), Expect = 3e-08
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 238 LMALNDGIVMVSFYSLYLTCSLNSSID--DVIAHLDHIKNVAGEDHVGLGAGYDG 290
L+ + G++ V + YL ++D D + + + G D+ +
Sbjct: 254 LIKDSGGVIQVVGFPAYLRPLSKPTLDKLDALRARFDLPPLEGLDYALMPGDPII 308
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 81.6 bits (202), Expect = 5e-18
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 20 NLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIR 79
L +D V + + W+ +RKG + A + V + Q T+ +
Sbjct: 5 ELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVW------EGFQATVNNITASN 58
Query: 80 RFTELYSDDLKLVTSAQGKDIL 101
+ SD + V S DI
Sbjct: 59 KLIRDNSDLVIPVRST--ADIR 78
Score = 76.3 bits (188), Expect = 4e-16
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 238 LMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDG 290
+A + G V V+ ++ +L ++S+IDD ++++ N+ GED +G+G +
Sbjct: 200 FIADHGGFVGVTMFAPFLKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFTQ 252
Score = 57.0 bits (138), Expect = 1e-09
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 24/125 (19%)
Query: 45 RKGMVGAQFWSAYVPCSSQHMDAVQITMEQV-DVIRRFTELY--------SD-------- 87
G VG ++ ++ T++ + I + +D
Sbjct: 204 HGGFVGVTMFAPFLKKGIDS------TIDDYAEAIEYVMNIVGEDAIGIGTDFTQGHGHD 257
Query: 88 DLKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFL 147
+ +T +G + F G+ V +P+L LL E V+K+ G N++
Sbjct: 258 FFEWLTHDKGYARRLTNFGKIVNPLGIRTVGEFPNLTETLLKR-GMPERVVRKVMGENWV 316
Query: 148 RVLSK 152
RVL
Sbjct: 317 RVLRD 321
Score = 54.7 bits (132), Expect = 7e-09
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 8/54 (14%)
Query: 181 GMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDI 234
G + A + V + Q T+ + + SD + V S DI
Sbjct: 32 GGLTAANCTVSVW------EGFQATVNNITASNKLIRDNSDLVIPVRST--ADI 77
>3ly0_A Dipeptidase AC. metallo peptidase. merops family M19; structural
genomics, nysgrc, target 9523C, phosphinate inhibitor,
PSI-2; HET: LY0; 1.40A {Rhodobacter sphaeroides} PDB:
3fdg_A
Length = 364
Score = 79.4 bits (196), Expect = 4e-17
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 35/121 (28%)
Query: 1 HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
HND + + N + H DLPR+++G F++ YVP
Sbjct: 13 HNDFLLRLLRNPANRETIW-----------LKGDGTGHLDLPRMKEGGFAGGFFAIYVPS 61
Query: 61 SSQHMD------------------------AVQITMEQVDVIRRFTELYSDDLKLVTSAQ 96
H A + + + K+ +A
Sbjct: 62 PQAHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWMERAARGRFKVCRTAA 121
Query: 97 G 97
Sbjct: 122 E 122
Score = 77.4 bits (191), Expect = 2e-16
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 238 LMALNDGIVMVSFYSLYLTC----SLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGIN 292
++ + G+V ++F + +L S + V+ HLDH+ + GEDHVG+G+ +DG
Sbjct: 253 MIRESRGMVGLNFATSFLREDGRRSAEMGWEPVLRHLDHLIDRLGEDHVGMGSDFDGAT 311
Score = 62.8 bits (153), Expect = 2e-11
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 109 STAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLSPN 163
+ +G+ DV+ P L AA+ H + E ++KL N+ +L + E +
Sbjct: 311 TIPQGIADVTGLPALQAAMRAH-GYDEPLMRKLCHENWYGLLERTWGEGHHHHHH 364
Score = 47.0 bits (112), Expect = 3e-06
Identities = 9/75 (12%), Positives = 16/75 (21%), Gaps = 24/75 (32%)
Query: 181 GMVGAQFWSAYVPCSSQHMD------------------------AVQITMEQVDVIRRFT 216
G F++ YVP H A + + +
Sbjct: 48 GGFAGGFFAIYVPSPQAHDAAHFEAMMDAPPFELPLPPMIRAEQAQPVALAMAGHLLWME 107
Query: 217 ELYSDDLKLVTSAQG 231
K+ +A
Sbjct: 108 RAARGRFKVCRTAAE 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.003
Identities = 39/322 (12%), Positives = 86/322 (26%), Gaps = 99/322 (30%)
Query: 6 WNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHM 65
++ R +H L +S+ +L++ QF + +P +
Sbjct: 4 YSTRPLTLSH-------GSLEHVLLVPTASFFIAS--QLQE-----QF-NKILPEPT--- 45
Query: 66 DAVQITMEQVDVIRRFTELYSDDLKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLLA 125
+ E EL L V+S V + +L
Sbjct: 46 EGFAADDEPTTPA----ELVGKFLGYVSSLVEPS----------------KVGQFDQVLN 85
Query: 126 ALLDH------------------PTWTETQVKKLAGLNFLRVLSKAEQESGRLSPNATRV 167
L +T + K L ++ A + R +
Sbjct: 86 LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKNYITARIMAKRPFDKKSN- 142
Query: 168 YSNLLSS-----FHLYATGMVGAQ------------FWSAYVPCSSQHMDAVQITMEQ-V 209
S L + L A + G Q + Y + T+ + +
Sbjct: 143 -SALFRAVGEGNAQLVA--IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 210 DVIRRFTELYSDDLKLVT------SAQGKD----IGVTLMALNDGIVMVSFYSLYLTC-S 258
++++ L ++ + KD I ++ I ++ +T
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYVVTAKL 255
Query: 259 LNSSIDDVIAHLD----HIKNV 276
L + ++ ++L H + +
Sbjct: 256 LGFTPGELRSYLKGATGHSQGL 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.006
Identities = 16/74 (21%), Positives = 21/74 (28%), Gaps = 45/74 (60%)
Query: 135 ETQ-VKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNLLSSFHLYATGMVGAQFWSAYVP 193
E Q +KKL ++ S LYA SA P
Sbjct: 18 EKQALKKL--------------QA----------------SLKLYADD-------SA--P 38
Query: 194 CSSQHMDAVQITME 207
A++ TME
Sbjct: 39 AL-----AIKATME 47
Score = 29.1 bits (64), Expect = 0.90
Identities = 7/37 (18%), Positives = 15/37 (40%), Gaps = 15/37 (40%)
Query: 212 IRRFT---ELYSDDLKLVTSAQGKDIGVTLMALNDGI 245
+++ +LY+DD SA +A+ +
Sbjct: 22 LKKLQASLKLYADD-----SAPA-------LAIKATM 46
Score = 29.1 bits (64), Expect = 0.93
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 12/41 (29%)
Query: 33 KSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQITME 73
K + L +L+ + Y S+ + A++ TME
Sbjct: 19 KQA-----LKKLQASL------KLYADDSAPAL-AIKATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.17
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 31/97 (31%)
Query: 219 YSDDLKLVTSAQGKD-IGVTLMA--LNDG---IVMVS--------FY-SLYLTCS----- 258
+ D L+T A GK IG ++ L G +V S +Y S+Y
Sbjct: 474 FKDKYVLITGA-GKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGST 532
Query: 259 -----LN-SSIDDVIAHLDHIKNVAGEDHVGLGAGYD 289
N S DV A ++ I + G G+D
Sbjct: 533 LIVVPFNQGSKQDVEALIEFI----YDTEKNGGLGWD 565
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural
genomics, protein structure initiative; HET: MSE; 1.65A
{Escherichia coli O6}
Length = 171
Score = 29.9 bits (67), Expect = 0.57
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 83 ELYSDDLKLVTSA--QGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKK 140
E Y D L+ + Q + +L + +YP+L A + H + T+ Q+ +
Sbjct: 8 EHYHDWLRDAHAMEKQAESML---------ESMASRIDNYPELRARIEQHLSETKNQIVQ 58
Query: 141 L 141
L
Sbjct: 59 L 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.1
Identities = 33/248 (13%), Positives = 76/248 (30%), Gaps = 74/248 (29%)
Query: 43 RLRKGMVGAQFWSAYVPCSSQH--MDAVQITMEQVD------------VIRRFTELYSDD 88
+++ M FW C+S ++ +Q + Q+D + R + ++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 89 LKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLR 148
+L+ S ++ L+V L +V + A + K L
Sbjct: 235 RRLLKSKPYENCLLV----------LLNVQN-AKAWNAF-NL------SCKIL------- 269
Query: 149 VLSKAEQESGRLSPNATRVYSNLLSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQ 208
+ ++ +Q + LS T S H E
Sbjct: 270 LTTRFKQVTDFLSAATTTHIS--------------------------LDHHSMTLTPDEV 303
Query: 209 VDVIRRFTELYSDDLKLVTSAQGKDIG---VTLMA--LNDGIVMVSFYSLYLTCSLNSSI 263
++ ++ + DL + ++++A + DG+ + L + I
Sbjct: 304 KSLLLKYLDCRPQDLP----REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 264 DDVIAHLD 271
+ + L+
Sbjct: 360 ESSLNVLE 367
Score = 28.3 bits (62), Expect = 4.3
Identities = 25/204 (12%), Positives = 60/204 (29%), Gaps = 81/204 (39%)
Query: 12 IHNHLVN-FNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPCSSQHMDAVQI 70
+H +V+ +N+ + D Q++ +++ H+
Sbjct: 445 LHRSIVDHYNIPKTF----DSDDLIPPYLD-----------QYFYSHI---GHHLKN--- 483
Query: 71 TMEQVDVIRRFTELYSDD------LKLVTSAQGKDILIVFFVVCSTAKGLEDVSHYPDLL 124
+E + + F ++ D ++ ++A S L+ + Y +
Sbjct: 484 -IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWN--------ASGSILNTLQQLKFYKPYI 534
Query: 125 AALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLSPNATRVYSNLLSSFHLYATGMVG 184
+ P + E V + L+FL K E+ +L
Sbjct: 535 C--DNDPKY-ERLVNAI--LDFLP---KIEE--------------------NLI------ 560
Query: 185 AQFWSAYVPCSSQHMDAVQITMEQ 208
S++ D ++I +
Sbjct: 561 ----------CSKYTDLLRIALMA 574
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris
PV. campestris STR. ATCC 33913, structural genomics,
PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Length = 166
Score = 29.1 bits (65), Expect = 1.1
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 114 LEDVSHYPDLLAALLDHPTWTETQVKKL 141
+ HYP+L + H T+ Q +
Sbjct: 29 ASRIEHYPELKRRIEQHVEETQQQSAGV 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 29.6 bits (66), Expect = 1.6
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 12/112 (10%)
Query: 41 LPRLRKGMVGAQFWSAYVPCSSQHMDAV------QITMEQVDVIRRFTELYSDDLKLVTS 94
LP L +V W + A+ Q+ + ++I +E D K
Sbjct: 135 LPHLTNAIVETNKWQEKI-AILAAFSAMVDAAKDQVALRMPELIPVLSETMWD-TKKEVK 192
Query: 95 AQGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNF 146
A + T + P L+ + D PT V L F
Sbjct: 193 AAATAAMTKA---TETVDNKDIERFIPSLIQCIAD-PTEVPETVHLLGATTF 240
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 28.9 bits (64), Expect = 2.0
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 6/40 (15%)
Query: 5 PWNIRKFIHNHLVNFNLSSDLSVTE------PWSKSSWSH 38
W R I +L N NL +L E + W++
Sbjct: 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNY 108
>1tsj_A Conserved hypothetical protein; structural genomics, protein
structure initiative, PSI, nysgxrc; 2.60A
{Staphylococcus aureus subsp} SCOP: d.32.1.7
Length = 139
Score = 27.7 bits (61), Expect = 2.3
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 208 QVDVIRRFTELYSDDLKLVTSAQGKDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVI 267
++ + ++ E D V + G MA++ SL++T ++ +
Sbjct: 31 EIITMAKYGENGPGDPGTVQHSIFTLNGQVFMAIDANSGTELPISLFVTVKDTIEMERLF 90
Query: 268 AHL 270
L
Sbjct: 91 NGL 93
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 27.9 bits (63), Expect = 4.8
Identities = 8/41 (19%), Positives = 11/41 (26%), Gaps = 3/41 (7%)
Query: 106 VVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNF 146
V K E Y + L D E G+ +
Sbjct: 146 FVVMDEKAPEGYLAYEEALGEEADPVRVPERAA---CGMAY 183
>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein;
2.00A {Escherichia coli} SCOP: a.25.1.4
Length = 166
Score = 26.9 bits (59), Expect = 6.4
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 78 IRRFTELYSDDLKLVTSA--QGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTE 135
++ +++ L SA Q L L + L A H T
Sbjct: 3 MKTIEDVFIHLLSDTYSAEKQLTRAL----------AKLARATSNEKLSQAFHAHLEETH 52
Query: 136 TQVKKL 141
Q++++
Sbjct: 53 GQIERI 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0588 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,521,628
Number of extensions: 262379
Number of successful extensions: 607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 577
Number of HSP's successfully gapped: 45
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)