RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12861
         (292 letters)



>d1itua_ c.1.9.7 (A:) Renal dipeptidase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 369

 Score =  127 bits (321), Expect = 4e-35
 Identities = 78/300 (26%), Positives = 122/300 (40%), Gaps = 36/300 (12%)

Query: 1   HNDLPWNIRKFIHNHLVNFNLSSDLSVTEPWSKSSWSHTDLPRLRKGMVGAQFWSAYVPC 60
           HNDLPW +    +N L +             +  + +HT++P+LR G VG QFWS Y PC
Sbjct: 20  HNDLPWQLLDMFNNRLQDERA--------NLTTLAGTHTNIPKLRAGFVGGQFWSVYTPC 71

Query: 61  SSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTS--------AQGKDILIVFFVVCSTAK 112
            +Q+ DAV+ T+EQ+DV+ R   +Y +    VTS         +GK   ++      +  
Sbjct: 72  DTQNKDAVRRTLEQMDVVHRMCRMYPETFLYVTSSAGIRQAFREGKVASLIGVEGGHSID 131

Query: 113 GLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLSPNATRV-YSNL 171
               V      L       T +          N+L     +E +S  LSP   RV     
Sbjct: 132 SSLGVLRALYQLGMRYLTLTHSCN---TPWADNWLVDTGDSEPQSQGLSPFGQRVVKELN 188

Query: 172 LSSFHLYATGMVGAQFWSAYVPCSSQHMDAVQITMEQVDVIRRFTELYSDDLKLVTSAQG 231
                +    +  A   +      +  + +           R                  
Sbjct: 189 RLGVLIDLAHVSVATMKATLQLSRAPVIFSHSSAYSVCASRRNVP--------------- 233

Query: 232 KDIGVTLMALNDGIVMVSFYSLYLTCSLNSSIDDVIAHLDHIKNVAGEDHVGLGAGYDGI 291
            D  + L+   D +VMV+FY+ Y++C+  +++  V  HLDHIK VAG   VG G  +DG+
Sbjct: 234 -DDVLRLVKQTDSLVMVNFYNNYISCTNKANLSQVADHLDHIKEVAGARAVGFGGDFDGV 292



 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 27/58 (46%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 104 FFVVCSTAKGLEDVSHYPDLLAALLDHPTWTETQVKKLAGLNFLRVLSKAEQESGRLS 161
           F  V    +GLEDVS YPDL+A LL    WTE +VK     N LRV    EQ S    
Sbjct: 289 FDGVPRVPEGLEDVSKYPDLIAELLRR-NWTEAEVKGALADNLLRVFEAVEQASNLTQ 345


>d1lbua1 a.20.1.1 (A:1-83) Zn2+ DD-carboxypeptidase, N-terminal
           domain {Streptomyces albus G [TaxId: 1962]}
          Length = 83

 Score = 26.5 bits (58), Expect = 1.1
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 132 TWTET--------QVKKL-AGLNFLRVLSKAEQESGRLSPNATRVYSNLLSSFHLYATGM 182
           TW+ T         V++L   +             G+  P          S++ L A G+
Sbjct: 5   TWSGTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQFGPATKAAVQRFQSAYGLAADGI 64

Query: 183 VGAQFWSA 190
            G   ++ 
Sbjct: 65  AGPATFNK 72


>d2g2ub1 d.98.1.1 (B:1-165) beta-lactamase-inhibitor protein, BLIP
           {Streptomyces clavuligerus [TaxId: 1901]}
          Length = 165

 Score = 25.8 bits (56), Expect = 5.1
 Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 172 LSSFHLYATGMVGAQFWSAYVP---CSSQ 197
           L+ F+    GM  AQ  +  V    C++ 
Sbjct: 85  LAKFNQVTVGMTRAQVLAT-VGQGSCTTW 112


>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 160

 Score = 25.1 bits (55), Expect = 9.2
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 78  IRRFTELYSDDLKLVTSA--QGKDILIVFFVVCSTAKGLEDVSHYPDLLAALLDHPTWTE 135
           I+   +L    L+ +  A  Q    L            + + +   DL   L  H   T+
Sbjct: 8   IQTMEDLLLHGLRDIYYAEQQITKAL----------PKMIEQATNRDLSQGLTSHLEETQ 57

Query: 136 TQVKKLAGL 144
            Q+++L  +
Sbjct: 58  KQIERLDQV 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,935
Number of extensions: 46934
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 7
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.2 bits)