BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12862
(98 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95631|NET1_HUMAN Netrin-1 OS=Homo sapiens GN=NTN1 PE=1 SV=2
Length = 604
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 61/74 (82%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++R+ CNCN HAR+CRFNMELYKLSGR SGGVCL CRH TAGRHCHYCKEGYY
Sbjct: 329 RATAREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGYY 388
Query: 83 RDPSRPITHRKACK 96
RD +PITHRKACK
Sbjct: 389 RDMGKPITHRKACK 402
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 26 SRDRIFFQT--------CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYC 77
+RD F+ C CN HA +C + R VC CRH TAG C C
Sbjct: 268 ARDSYFYAVSDLQVGGRCKCNGHAARC--------VRDRDDSLVC-DCRHNTAGPECDRC 318
Query: 78 KEGYYRDPSRPITHRKA 94
K +Y P + T R+A
Sbjct: 319 KPFHYDRPWQRATAREA 335
>sp|Q90922|NET1_CHICK Netrin-1 OS=Gallus gallus GN=NTN1 PE=1 SV=1
Length = 606
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 63/75 (84%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++R+ CNCN HAR+CRFNMELYKLSGR SGGVCL CRH TAGRHCHYCKEG+Y
Sbjct: 331 RATAREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFY 390
Query: 83 RDPSRPITHRKACKK 97
RD S+PI+HRKACK+
Sbjct: 391 RDLSKPISHRKACKE 405
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 26 SRDRIFFQT--------CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYC 77
+RD F+ C CN HA +C + R VC C+H TAG C C
Sbjct: 270 ARDSYFYAVSDLQVGGRCKCNGHASRC--------VRDRDDNLVC-DCKHNTAGPECDRC 320
Query: 78 KEGYYRDPSRPITHRKA 94
K +Y P + T R+A
Sbjct: 321 KPFHYDRPWQRATAREA 337
>sp|Q2HXW4|NET1_PIG Netrin-1 OS=Sus scrofa GN=NTN1 PE=2 SV=1
Length = 600
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++R+ CNCN HAR+CRFNMELYKLSGR SGGVCL CRH TAGRHCHYCKEGY+
Sbjct: 329 RATAREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGYF 388
Query: 83 RDPSRPITHRKACK 96
RD +PITHRKACK
Sbjct: 389 RDLGKPITHRKACK 402
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 26 SRDRIFFQT--------CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYC 77
+RD F+ C CN HA +C + R VC CRH TAG C C
Sbjct: 268 ARDSYFYAVSDLQVGGRCKCNGHAARC--------VRDRDDSLVC-DCRHNTAGPECDRC 318
Query: 78 KEGYYRDPSRPITHRKA 94
K +Y P + T R+A
Sbjct: 319 KPFHYDRPWQRATAREA 335
>sp|Q924Z9|NET1_RAT Netrin-1 OS=Rattus norvegicus GN=Ntn1 PE=1 SV=1
Length = 604
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++R+ CNCN HAR+CRFNMELYKLSGR SGGVCL CRH TAGRHCHYCKEG+Y
Sbjct: 329 RATAREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFY 388
Query: 83 RDPSRPITHRKACK 96
RD +PITHRKACK
Sbjct: 389 RDMGKPITHRKACK 402
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN HA +C + R VC CRH TAG C CK +Y P + T R+A
Sbjct: 285 CKCNGHAARC--------VRDRDDSLVC-DCRHNTAGPECDRCKPFHYDRPWQRATAREA 335
>sp|O09118|NET1_MOUSE Netrin-1 OS=Mus musculus GN=Ntn1 PE=1 SV=3
Length = 604
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 61/74 (82%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++R+ CNCN HAR+CRFNMELYKLSGR SGGVCL CRH TAGRHCHYCKEG+Y
Sbjct: 329 RATAREANECVACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFY 388
Query: 83 RDPSRPITHRKACK 96
RD +PITHRKACK
Sbjct: 389 RDMGKPITHRKACK 402
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN HA +C + R VC CRH TAG C CK +Y P + T R+A
Sbjct: 285 CKCNGHAARC--------VRDRDDSLVC-DCRHNTAGPECDRCKPFHYDRPWQRATAREA 335
>sp|Q90923|NET3_CHICK Netrin-3 (Fragment) OS=Gallus gallus GN=NTN3 PE=2 SV=1
Length = 581
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 60/74 (81%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R S+R+ CNCN HAR+CRFNMELYKLSGR SGGVCL CRH TAGRHCHYCKEG+Y
Sbjct: 306 RASAREANECLACNCNLHARRCRFNMELYKLSGRKSGGVCLNCRHNTAGRHCHYCKEGFY 365
Query: 83 RDPSRPITHRKACK 96
RD S+ IT RKACK
Sbjct: 366 RDLSKSITDRKACK 379
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 3 MFEDIDG--SDKESGGEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGG 60
+F ++ G + +E GG + S + C CN HA +C + E KL
Sbjct: 228 LFRELGGREAGEEDGGAGATPYYYSVGELQVGGRCKCNGHASRCVKDKE-QKL------- 279
Query: 61 VCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
VC C+H T G C CK +Y P + + R+A
Sbjct: 280 VC-DCKHNTEGPECDRCKPFHYDRPWQRASAREA 312
>sp|O00634|NET3_HUMAN Netrin-3 OS=Homo sapiens GN=NTN3 PE=2 SV=1
Length = 580
Score = 113 bits (282), Expect = 4e-25, Method: Composition-based stats.
Identities = 48/74 (64%), Positives = 60/74 (81%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++R+ C+CN HAR+CRFNMELY+LSGR SGGVCL CRH TAGRHCHYC+EG+Y
Sbjct: 299 RATARESHACLACSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFY 358
Query: 83 RDPSRPITHRKACK 96
RDP R ++ R+AC+
Sbjct: 359 RDPGRALSDRRACR 372
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN HA +C + + G + CRH T G C CK Y P + T R++
Sbjct: 255 CKCNGHASRCLLD---------TQGHLICDCRHGTEGPDCGRCKPFYCDRPWQRATARES 305
>sp|Q9R1A3|NET3_MOUSE Netrin-3 OS=Mus musculus GN=Ntn3 PE=2 SV=1
Length = 580
Score = 111 bits (277), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/62 (74%), Positives = 55/62 (88%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C+CN HAR+CRFNMELY+LSGR SGGVCL CRH TAGRHCHYC+EG+YRDP R ++ R+A
Sbjct: 311 CSCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGFYRDPGRVLSDRRA 370
Query: 95 CK 96
C+
Sbjct: 371 CR 372
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN HA +C + + G + C+H T G C CK Y P + T ++A
Sbjct: 255 CKCNGHASRCLLD---------THGHLVCDCQHGTEGPDCSRCKPFYCDRPWQRATGQEA 305
>sp|Q24568|NETB_DROME Netrin-B OS=Drosophila melanogaster GN=NetB PE=1 SV=1
Length = 793
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 56/75 (74%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R + D + C CN HAR+CRFN+ELYKLSGR SGGVC C+H T GR+CHYC+EGYY
Sbjct: 486 RATDNDANECKMCQCNGHARRCRFNLELYKLSGRVSGGVCYNCQHDTTGRYCHYCREGYY 545
Query: 83 RDPSRPITHRKACKK 97
RD ++P HRK CK+
Sbjct: 546 RDATKPPNHRKVCKR 560
>sp|Q8WTR8|NET5_HUMAN Netrin-5 OS=Homo sapiens GN=NTN5 PE=2 SV=2
Length = 489
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/62 (67%), Positives = 53/62 (85%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C+CN HAR+CRFN EL++LSG SGGVC +CRH TAGRHCHYC+ G++RDPS+PI R+A
Sbjct: 212 CSCNQHARRCRFNSELFRLSGGRSGGVCERCRHHTAGRHCHYCQPGFWRDPSQPIFSRRA 271
Query: 95 CK 96
C+
Sbjct: 272 CR 273
>sp|Q24567|NETA_DROME Netrin-A OS=Drosophila melanogaster GN=NetA PE=2 SV=2
Length = 726
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 51/62 (82%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
CNCN HAR+CRFNME+++LS SGGVC CRH T GR+CH CKEG+YRD ++P+THRK
Sbjct: 369 CNCNKHARQCRFNMEIFRLSQGVSGGVCQNCRHSTTGRNCHQCKEGFYRDATKPLTHRKV 428
Query: 95 CK 96
CK
Sbjct: 429 CK 430
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN HA KC S +SG + +C H TAGR C CK ++ P T ++A
Sbjct: 313 CKCNGHASKC---------STDASGQLNCECSHNTAGRDCERCKPFHFDRPWARATAKEA 363
>sp|P34710|UNC6_CAEEL Netrin unc-6 OS=Caenorhabditis elegans GN=unc-6 PE=1 SV=1
Length = 612
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 51/63 (80%)
Query: 34 TCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRK 93
CNCN HA++CRF+ EL++LSG SGGVCL CRH TAGR+CH CK G+ RD S P+THRK
Sbjct: 346 ACNCNQHAKRCRFDAELFRLSGNRSGGVCLNCRHNTAGRNCHLCKPGFVRDTSLPMTHRK 405
Query: 94 ACK 96
ACK
Sbjct: 406 ACK 408
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 3 MFEDIDGSDKESGGEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVC 62
+ D++ E+ E +++ S + C CN HA +C F+ G
Sbjct: 259 LSNDVNSYGNETDDEVKQRYFYSMGELAVGGRCKCNGHASRCIFD---------KMGRYT 309
Query: 63 LQCRHFTAGRHCHYCKEGYYRDP 85
C+H TAG C CK +Y P
Sbjct: 310 CDCKHNTAGTECEMCKPFHYDRP 332
>sp|Q5RB89|NET4_PONAB Netrin-4 OS=Pongo abelii GN=NTN4 PE=2 SV=1
Length = 628
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+TC CN HA C F++ +++ SG SGGVC C+H T G+HC CK G+YRD RP +
Sbjct: 330 RTCKCNGHADTCHFDVNVWEASGNRSGGVCDDCQHNTEGQHCQRCKPGFYRDLRRPFSAP 389
Query: 93 KACKK 97
ACK
Sbjct: 390 DACKP 394
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 28 DRIFFQTCNCNNHARKCRFNMELYKLSGRSS----GGVCLQCRHFTAGRHCHYCKEGYYR 83
D I +C CN HA +C + + G C+ C+H TAG HC +C Y
Sbjct: 255 DFIVKGSCFCNGHADQCIPVHGFRPVKAPGTFHMVHGKCM-CKHNTAGSHCQHCAPLYND 313
Query: 84 DP 85
P
Sbjct: 314 QP 315
>sp|Q9JI33|NET4_MOUSE Netrin-4 OS=Mus musculus GN=Ntn4 PE=2 SV=2
Length = 628
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+TC CN HA C F++ +++ SG SGGVC C+H T G+HC CK G+YRD RP +
Sbjct: 330 RTCKCNGHADTCHFDVNVWEASGNRSGGVCNNCQHNTEGQHCQRCKPGFYRDLRRPFSAP 389
Query: 93 KACK 96
ACK
Sbjct: 390 DACK 393
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 28 DRIFFQTCNCNNHARKCRFNMELYKLSGRSSG-----GVCLQCRHFTAGRHCHYCKEGYY 82
D I +C CN HA +C +E ++ G C+ C+H TAG HC +C Y
Sbjct: 255 DFIVKGSCFCNGHADQC-LPVEGFRPIKAPGAFHVVHGRCM-CKHNTAGSHCQHCAPLYN 312
Query: 83 RDP 85
P
Sbjct: 313 DRP 315
>sp|Q9HB63|NET4_HUMAN Netrin-4 OS=Homo sapiens GN=NTN4 PE=2 SV=2
Length = 628
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 42/65 (64%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+TC CN HA C F++ +++ SG SGGVC C+H T G++C CK G+YRD RP +
Sbjct: 330 RTCKCNGHADTCHFDVNVWEASGNRSGGVCDDCQHNTEGQYCQRCKPGFYRDLRRPFSAP 389
Query: 93 KACKK 97
ACK
Sbjct: 390 DACKP 394
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 28 DRIFFQTCNCNNHARKCRFNMELYKLSGRSS----GGVCLQCRHFTAGRHCHYCKEGYYR 83
D I +C CN HA +C + + G C+ C+H TAG HC +C Y
Sbjct: 255 DFIVKGSCFCNGHADQCIPVHGFRPVKAPGTFHMVHGKCM-CKHNTAGSHCQHCAPLYND 313
Query: 84 DP 85
P
Sbjct: 314 RP 315
>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
Length = 1801
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+ C CN H+ C F+M +Y SG SGGVC C+H TAGRHC C+ +YRDP++ +
Sbjct: 348 RKCECNGHSHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTKDMRDP 407
Query: 93 KACK 96
AC+
Sbjct: 408 AACR 411
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKAC 95
G CL+C H T G HC +CK G++ +R HR C
Sbjct: 1008 GQCLRCLHHTEGPHCGHCKPGFHGQAARQSCHRCTC 1043
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
C CN A +C + G CL CR +T G HC C G++ DP P
Sbjct: 880 CVCNGRADECD-----------AHTGACLGCRDYTGGEHCERCIAGFHGDPRLP 922
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPIT--HR 92
C C HA +C + G C+ C+H T G +C C++ Y P P H
Sbjct: 286 CFCYGHASQCAPAPGAPAHAEGMVHGACI-CKHNTRGLNCEQCQDFYQDLPWHPAEDGHT 344
Query: 93 KACKK 97
AC+K
Sbjct: 345 HACRK 349
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN H C F+M +Y SG SGGVC C+H TAGRHC +C+ +YRDP++ +
Sbjct: 350 CECNGHTHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCEFCRPFFYRDPTKDMRDPAV 409
Query: 95 CKK 97
C+
Sbjct: 410 CRP 412
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
C CN A +C + G CL CR +T G HC C G++ DP P
Sbjct: 878 CVCNGRADECDTHT-----------GACLGCRDYTGGEHCERCIAGFHGDPRLP 920
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKACKKV 98
G CL+C H T G HC YCK G++ +R HR C +
Sbjct: 1006 GQCLRCLHNTEGPHCGYCKPGFHGQAARQSCHRCTCNLL 1044
>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2
Length = 1798
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 39/64 (60%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+ C C+ H C F+M +Y SG SGGVC C+H TAGRHC C+ +YRDP++ +
Sbjct: 345 RKCECHGHTHSCHFDMAVYLASGNVSGGVCDGCQHNTAGRHCELCRPFFYRDPTKDLRDP 404
Query: 93 KACK 96
C+
Sbjct: 405 AVCR 408
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 11/54 (20%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
C CN HA +C + G CL CR T G HC C G++ DP P
Sbjct: 877 CVCNGHADECN-----------THTGACLGCRDHTGGEHCERCIAGFHGDPRLP 919
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKAC 95
G CL+C H T G HC +CK G++ +R HR C
Sbjct: 1005 GQCLRCLHHTEGPHCAHCKPGFHGQAARQSCHRCTC 1040
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPIT--HR 92
C C HA +C + G C+ C+H T G +C C++ Y P RP H
Sbjct: 283 CFCYGHASECAPAPGAPAHAEGMVHGACI-CKHNTRGLNCEQCQDFYRDLPWRPAEDGHS 341
Query: 93 KACKK 97
AC+K
Sbjct: 342 HACRK 346
>sp|A4D0S4|LAMB4_HUMAN Laminin subunit beta-4 OS=Homo sapiens GN=LAMB4 PE=2 SV=1
Length = 1761
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 34 TCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRK 93
+C+CN+H+ +C F+M Y SG SGGVC C+H T G+HC C+ +YRDP + I+
Sbjct: 331 SCSCNSHSSRCHFDMTTYLASGGLSGGVCEDCQHNTEGQHCDRCRPLFYRDPLKTISDPY 390
Query: 94 AC 95
AC
Sbjct: 391 AC 392
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPS 86
G C C FT GR+C C +GYY +PS
Sbjct: 877 GSCFNCGGFTTGRNCERCIDGYYGNPS 903
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 17 EHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSG---GVCLQCRHFTAGRH 73
+ L K+ + + I +C CN HA +CR ++ G G C+ C+H T G +
Sbjct: 247 DSLDKYYYALYEMIVRGSCFCNGHASECRPMQKMRGDVFSPPGMVHGQCV-CQHNTDGPN 305
Query: 74 CHYCKEGYYRDPSRP 88
C CK+ + P RP
Sbjct: 306 CERCKDFFQDAPWRP 320
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRS-SGGVCLQCRHFTAGRHCHYCKEGYY 82
Q C CNN N+++ S G CL+C H T G +C CK G+Y
Sbjct: 968 QPCACNN-------NIDVTDPESCSRVTGECLRCLHNTQGANCQLCKPGHY 1011
>sp|P07942|LAMB1_HUMAN Laminin subunit beta-1 OS=Homo sapiens GN=LAMB1 PE=1 SV=2
Length = 1786
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
CNCN H+ C F+M +Y +G SGGVC C+H T GR+C CK YY+ P R I
Sbjct: 335 CNCNEHSISCHFDMAVYLATGNVSGGVCDDCQHNTMGRNCEQCKPFYYQHPERDIRDPNF 394
Query: 95 CKK 97
C++
Sbjct: 395 CER 397
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
Q C CN HA C G CL C+ +T G +C C GYY DP
Sbjct: 865 QPCQCNGHADDCD-----------PVTGECLNCQDYTMGHNCERCLAGYYGDP 906
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 20 KKFRCSSRDRIFFQTCNCNNHARKCR----FNMELYKLSGRSSGGVCLQCRHFTAGRHCH 75
+K+ + D + C C HA +C FN E+ + G C+ CRH T G +C
Sbjct: 256 EKYYYAVYDMVVRGNCFCYGHASECAPVDGFNEEVEGMVH----GHCM-CRHNTKGLNCE 310
Query: 76 YCKEGYYRDPSRPITHR--KACKK 97
C + Y+ P RP R ACKK
Sbjct: 311 LCMDFYHDLPWRPAEGRNSNACKK 334
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRD 84
G CL+C + T G HC +C+ GYY D
Sbjct: 995 GRCLKCLYHTEGEHCQFCRFGYYGD 1019
>sp|P11046|LAMB1_DROME Laminin subunit beta-1 OS=Drosophila melanogaster GN=LanB1 PE=1
SV=4
Length = 1788
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C CN+HA C F+ ++ SG SGGVC C H T G+HC C +YRDP + IT +
Sbjct: 355 CECNDHAVSCHFDEAVFTASGFVSGGVCDNCLHNTRGQHCEECMPYFYRDPEQDITSERV 414
Query: 95 CK 96
C+
Sbjct: 415 CQ 416
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 43 KCRFNMELYKLSG-RSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
+C N++LY G CL+C + T G HC CK+G++ D
Sbjct: 992 ECSNNVDLYDTGNCDRQTGACLKCLYQTTGDHCELCKDGFFGD 1034
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 34 TCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
C CN HA C G C+ C+ T G C C +GYY +P
Sbjct: 882 VCQCNGHAATCD-----------PIQGTCIDCQDSTTGYSCDSCLDGYYGNP 922
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 50 LYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
L +L + G C C+ F GR C+ CK+GY+
Sbjct: 434 LNELEEGAVAGAC-HCKAFVTGRRCNQCKDGYW 465
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 1 MTMFEDIDGSDKESGGEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSG- 59
MT + + +S E+ +K+ + + +C+C HA +C + + G
Sbjct: 254 MTKLHKLGDNLLDSRLENEEKYYYGISNMVVRGSCSCYGHASQCLPLDPAFSQADNEDGM 313
Query: 60 --GVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRK--ACKK 97
G C +C H T G +C C++ + P +P +K ACKK
Sbjct: 314 VHGRC-ECTHNTKGMNCEECEDFFNDLPWKPAFGKKTNACKK 354
>sp|P02469|LAMB1_MOUSE Laminin subunit beta-1 OS=Mus musculus GN=Lamb1 PE=1 SV=3
Length = 1786
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
CNCN H+ C F+M ++ +G SGGVC C+H T GR+C CK Y++ P R I
Sbjct: 335 CNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNL 394
Query: 95 CKK 97
C+
Sbjct: 395 CEP 397
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
Q C CN HA C + G CL C+ +T G +C C GYY DP
Sbjct: 865 QPCQCNGHALDCD-----------TVTGECLSCQDYTTGHNCERCLAGYYGDP 906
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
G CL+C + T G HC C+ GYY D R
Sbjct: 995 GRCLKCLYHTEGDHCQLCQYGYYGDALR 1022
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 20 KKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKE 79
+K+ + D + C C HA +C + + G C+ CRH T G +C C +
Sbjct: 256 EKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCM-CRHNTKGLNCELCMD 314
Query: 80 GYYRDPSRPITHR--KACKK 97
Y+ P RP R ACKK
Sbjct: 315 FYHDLPWRPAEGRNSNACKK 334
>sp|Q8JHV6|LAMB4_DANRE Laminin subunit beta-4 OS=Danio rerio GN=lamb4 PE=2 SV=1
Length = 1827
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
CNC++H+ KC F + Y +G SGGVC CR+ G C C YY+DP R + A
Sbjct: 334 CNCHSHSEKCHFELARYLATGGVSGGVCDDCRNNRIGPQCELCGPFYYQDPQRSVDDPYA 393
Query: 95 C 95
C
Sbjct: 394 C 394
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDP 85
G CL CR +AGR+C C+EGY DP
Sbjct: 961 GDCLDCREHSAGRNCERCEEGYVGDP 986
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYY 82
G CL+C H T G C CK GYY
Sbjct: 1073 GECLRCLHNTEGPRCQSCKRGYY 1095
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 34 TCNCNNHARKCRFNMELYKLSGRSSGGV----CLQCRHFTAGRHCHYCKEGYYRDPSRP 88
+C CN HA +C ++ + + G+ C+ C+H TAG +C C++ Y+ P RP
Sbjct: 266 SCFCNGHASQC-IPVDGARGDTFTEPGMVHGRCV-CQHNTAGYNCERCQDFYHDAPWRP 322
>sp|O15230|LAMA5_HUMAN Laminin subunit alpha-5 OS=Homo sapiens GN=LAMA5 PE=1 SV=8
Length = 3695
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSS-------GGVCLQCRHFTAGRHCHYCKEGYYRDP 85
Q+CNC HA C ++ E+ + S GGVC+ C+H T G +C C G+YR P
Sbjct: 357 QSCNCYGHATDCYYDPEVDRRRASQSLDGTYQGGGVCIDCQHHTTGVNCERCLPGFYRSP 416
Query: 86 SRPITHRKACKK 97
+ P+ C++
Sbjct: 417 NHPLDSPHVCRR 428
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR---DPSRP 88
C C+ H+ +C L G GVC+ C+H T G HC C+ G+ DPS P
Sbjct: 1864 CQCHGHSDRC--------LPG---SGVCVDCQHNTEGAHCERCQAGFVSSRDDPSAP 1909
>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=2
Length = 5193
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 16 GEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLS---GRSSGGVCLQCRHFTAGR 72
G+++ F C + C C+ HA C ++ + R GGVC C+H T GR
Sbjct: 561 GDNVNAFNC--------KPCQCHGHASSCHYDASVDPFPLEHNRGGGGVCDDCQHHTTGR 612
Query: 73 HCHYCKEGYYR----DPSRPITHRKACK 96
HC C++ +YR DP+ P ACK
Sbjct: 613 HCESCQDYFYRPVGADPAAP----DACK 636
>sp|Q61001|LAMA5_MOUSE Laminin subunit alpha-5 OS=Mus musculus GN=Lama5 PE=1 SV=4
Length = 3718
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSS-------GGVCLQCRHFTAGRHCHYCKEGYYRDP 85
Q+CNC+ HA C ++ E+ + + + GGVCL C+H T G +C C G++R P
Sbjct: 362 QSCNCHGHAYDCYYDPEVDRRNASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 421
Query: 86 SRPITHRKACK 96
+P+ C+
Sbjct: 422 DQPLDSPHVCR 432
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY-RDPSRPITHRK 93
C C+ H+ +C L G G+C+ C+H T G C C+ G+ DPS P +
Sbjct: 1865 CQCHGHSDRC--------LPG---SGICVGCQHNTEGDQCERCRPGFVSSDPSNPASPCV 1913
Query: 94 AC 95
+C
Sbjct: 1914 SC 1915
>sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3
Length = 5202
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 16 GEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSG---RSSGGVCLQCRHFTAGR 72
G+ + F C + C CN+H++ C +N+ + R GGVC C H T GR
Sbjct: 564 GDQVYAFNC--------KPCQCNSHSKSCHYNISVDPFPFEHFRGGGGVCDDCEHNTTGR 615
Query: 73 HCHYCKEGYYR----DPS 86
+C CK+ ++R DPS
Sbjct: 616 NCELCKDYFFRQVGADPS 633
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 59 GGVCLQCRHFTAGRHCHYCKEGYY 82
GG C C+ +GR C+ C+ G+Y
Sbjct: 659 GGQC-NCKRHVSGRQCNQCQNGFY 681
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
C C+ HA C + Y+ +C Q FT G HC C Y P R
Sbjct: 518 CQCHGHADNCDTTSQPYRC-------LCSQ-ESFTEGLHCDRCLPLYNDKPFR 562
>sp|Q61087|LAMB3_MOUSE Laminin subunit beta-3 OS=Mus musculus GN=Lamb3 PE=2 SV=2
Length = 1168
Score = 53.5 bits (127), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD--PSRPI 89
Q C+CN H+ C F+ ++ S ++GGVC CR T G++C C+ Y+R+ PS PI
Sbjct: 311 QRCDCNGHSETCHFDPAVFAASQGTNGGVCDNCRDHTEGKNCERCQLHYFRNRRPSAPI 369
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 34 TCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
+C C+ HA +C N + VC+ C+H TAG +C C Y P RP
Sbjct: 249 SCFCHGHADRCAPNPG-GSTTAVQVNNVCV-CQHNTAGPNCDRCAPFYNNRPWRP 301
>sp|Q61092|LAMC2_MOUSE Laminin subunit gamma-2 OS=Mus musculus GN=Lamc2 PE=1 SV=2
Length = 1191
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR 83
+ C+CN +R+C F+ EL++ +G SG CL C TAG HC C+EG+YR
Sbjct: 26 EVCDCNGKSRQCVFDQELHRQTG--SGFRCLNCNDNTAGVHCERCREGFYR 74
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
Q C CNN+ + +L+GR CL+C + TAG +C CK GY+ DP P
Sbjct: 515 QRCQCNNNVDP-NASGNCDQLTGR-----CLKCIYNTAGVYCDQCKAGYFGDPLAP 564
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3
Length = 1575
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR-DPSRP 88
CNC+ + +C F+ EL++ +G GG C CR TAG HC C+E +Y DP P
Sbjct: 327 CNCSGRSEECTFDRELFRSTGH--GGRCHHCRDHTAGPHCERCQENFYHWDPRMP 379
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
G CL+C H T G HC +C+EG+Y P
Sbjct: 829 GHCLRCLHNTTGDHCEHCQEGFYGSALAP 857
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 61 VCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKACKK 97
VC C GR C C +G++ DP H + C +
Sbjct: 773 VCTHCPPGQRGRRCEVCDDGFFGDPLGLFGHPQPCHQ 809
>sp|Q16787|LAMA3_HUMAN Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2
Length = 3333
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGR-------SSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
+ CNC+ HA C ++ ++ + + GGVC+ C+H TAG +C C +GYYR
Sbjct: 354 EACNCHGHASNCYYDPDVERQQASLNTQGIYAGGGVCINCQHNTAGVNCEQCAKGYYRPY 413
Query: 86 SRPITHRKAC 95
P+ C
Sbjct: 414 GVPVDAPDGC 423
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 11/48 (22%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
CNCN H+ +C+ G+C+ C+H TAG HC C+EGYY
Sbjct: 1687 CNCNGHSNQCQ-----------DGSGICVNCQHNTAGEHCERCQEGYY 1723
>sp|Q9R0B6|LAMC3_MOUSE Laminin subunit gamma-3 OS=Mus musculus GN=Lamc3 PE=2 SV=2
Length = 1581
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR-DPSRP 88
CNC+ H+ +C F+ ELY+ +G GG C +CR T G HC C++ YYR P P
Sbjct: 336 CNCSGHSEECTFDRELYRSTGH--GGHCQRCRDHTTGPHCERCEKNYYRWSPKTP 388
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 43 KCRFNMELYKLSG-RSSGGVCLQCRHFTAGRHCHYCKEGYYRD--PSRPI 89
+C N++L + G CL+C + T G HC +C+EG+Y +RP+
Sbjct: 823 QCSGNVDLNAVGNCDPHSGHCLRCLYNTTGAHCEHCREGFYGSAVATRPV 872
>sp|Q13751|LAMB3_HUMAN Laminin subunit beta-3 OS=Homo sapiens GN=LAMB3 PE=1 SV=1
Length = 1172
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
Q C+CN H+ C F+ ++ S + GGVC CR T G++C C+ Y+R+
Sbjct: 314 QRCDCNGHSETCHFDPAVFAASQGAYGGVCDNCRDHTEGKNCERCQLHYFRN 365
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 15/63 (23%)
Query: 34 TCNCNNHARKCRFNMELYKLSGRSSG--------GVCLQCRHFTAGRHCHYCKEGYYRDP 85
+C C+ HA +C G S+G VC+ C+H TAG +C C Y P
Sbjct: 249 SCFCHGHADRCA------PKPGASAGPSTAVQVHDVCV-CQHNTAGPNCERCAPFYNNRP 301
Query: 86 SRP 88
RP
Sbjct: 302 WRP 304
>sp|Q8HZI9|LAMC2_HORSE Laminin subunit gamma-2 OS=Equus caballus GN=LAMC2 PE=2 SV=1
Length = 1190
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
Q C+CN +R+C F+ EL+K +G +G CL C T G HC CK G+YR R
Sbjct: 26 QVCDCNGKSRQCIFDQELHKQTG--NGFRCLNCNDNTDGIHCERCKAGFYRQRER 78
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
Q C CNN+ + +L+GR CL+C H TAG HC CK GYY DP P
Sbjct: 516 QPCQCNNNVDP-SASGNCDRLTGR-----CLKCIHNTAGVHCDQCKAGYYGDPLAP 565
>sp|Q01635|LAMB1_CHICK Laminin subunit beta-1 (Fragment) OS=Gallus gallus GN=LAMB1 PE=2
SV=1
Length = 303
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAG 71
CNCN H+ +C F+M +Y +G +SGGVC C+H T G
Sbjct: 267 CNCNGHSTQCHFDMAVYMATGNTSGGVCDDCQHNTGG 303
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 20 KKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGV---CLQCRHFTAGRHCHY 76
+K+ + D + C C HA +C + S G V C+ CRH T G +C
Sbjct: 188 EKYYYAIYDMVVRGNCFCYGHASEC---APVEGFSEEVEGMVHGHCM-CRHNTKGLNCEQ 243
Query: 77 CKEGYYRDPSRPITHR--KACKK 97
C + Y+ P RP R ACKK
Sbjct: 244 CLDFYHDLPWRPAEGRNSNACKK 266
>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan OS=Caenorhabditis elegans GN=unc-52
PE=1 SV=2
Length = 3375
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 11/53 (20%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
C+CNNH+ + G S G CL C H T G HC CK+GYY D ++
Sbjct: 1011 CHCNNHSPR-----------GCDSFGRCLLCEHNTEGTHCERCKKGYYGDATK 1052
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
+ C CN HA +C G CL C+H T G C CK G+ D R
Sbjct: 953 EKCECNGHASQCD-----------KEYGYCLDCQHNTEGDQCERCKPGFVGDARR 996
>sp|A0JP86|LAMC1_XENTR Laminin subunit gamma-1 OS=Xenopus tropicalis GN=lamc1 PE=2 SV=1
Length = 1592
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
CNCN +++C F+ ELY+ +G GG C C T G +C C+E YYR + H
Sbjct: 325 CNCNGRSQECYFDPELYRSTGH--GGHCTGCADNTDGPNCERCRENYYRQDNNEPCHACQ 382
Query: 95 CKKV 98
C V
Sbjct: 383 CNPV 386
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
C CN H+ C GVC C+H TAG HC C EGYY D
Sbjct: 707 CTCNGHSDTCD-----------PESGVC-DCQHNTAGPHCERCSEGYYGD 744
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 56 RSSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
R+ VC C T G+ C C +GY+ DP
Sbjct: 769 RTKEVVCTNCPLGTTGKRCELCDDGYFGDP 798
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDP 85
G CL+C + T G +C C++G+Y +P
Sbjct: 830 GECLKCIYNTGGFYCDRCRDGFYGNP 855
>sp|Q13753|LAMC2_HUMAN Laminin subunit gamma-2 OS=Homo sapiens GN=LAMC2 PE=1 SV=2
Length = 1193
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 19 LKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCK 78
L R +SR + C+CN +R+C F+ EL++ +G +G CL C T G HC CK
Sbjct: 16 LPAARATSRREV----CDCNGKSRQCIFDRELHRQTG--NGFRCLNCNDNTDGIHCEKCK 69
Query: 79 EGYYR 83
G+YR
Sbjct: 70 NGFYR 74
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
Q C CNN+ + +L+GR CL+C H TAG +C CK GY+ DP P
Sbjct: 515 QPCQCNNNVDP-SASGNCDRLTGR-----CLKCIHNTAGIYCDQCKAGYFGDPLAP 564
>sp|Q8K3K1|USH2A_RAT Usherin OS=Rattus norvegicus GN=Ush2a PE=1 SV=1
Length = 1512
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 20 KKFRCSSRDRIFF-QTCNCNNHARKCRFN--MELYKLS-GRSSGGVCLQCRHFTAGRHCH 75
K FR ++ F + C C+ HA C ++ M+ + L R GGVC C+H T GR+C
Sbjct: 555 KPFRSGNKVHAFNCKPCQCHGHASSCHYDASMDPFPLEYNRGGGGVCDDCQHHTTGRNCE 614
Query: 76 YCKEGYYR----DPSRP 88
C++ +YR DP+ P
Sbjct: 615 SCQDYFYRPIGADPADP 631
>sp|Q61789|LAMA3_MOUSE Laminin subunit alpha-3 OS=Mus musculus GN=Lama3 PE=1 SV=3
Length = 3333
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 33 QTCNCNNHARKCRFNMEL----YKLSGR---SSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
+ CNC+ HA C ++ ++ L+ + + GGVC+ C+H TAG +C C +GY+R
Sbjct: 351 EACNCHGHAVDCYYDPDVEHQQASLNSKGVYAGGGVCINCQHNTAGVNCEKCAKGYFRPH 410
Query: 86 SRPITHRKAC 95
P+ C
Sbjct: 411 GVPVDALHGC 420
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
CNCN H+ +C+ G+C+ C+H TAG HC C+ G+Y
Sbjct: 1687 CNCNGHSNRCQ-----------DGSGICINCQHNTAGEHCERCQAGHY 1723
>sp|Q00174|LAMA_DROME Laminin subunit alpha OS=Drosophila melanogaster GN=LanA PE=1 SV=2
Length = 3712
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 16 GEHLKKFRCSSRDRIFF-QTCNCNNHARKCRFNMELYKLSGRS--------SGGVCLQCR 66
G KK+R ++ R F + CNC+ H+ +C+++ E+ + G S GGVC C+
Sbjct: 313 GFEQKKWRQNTNARPFNCEPCNCHGHSNECKYDEEVNR-KGLSLDIHGHYDGGGVCQNCQ 371
Query: 67 HFTAGRHCHYCKEGYYR 83
H T G +C+ CK YYR
Sbjct: 372 HNTVGINCNKCKPKYYR 388
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
C CN H+ C + G+C +C+H T G HC C GYY
Sbjct: 1809 CECNGHSETCD-----------CATGICSKCQHGTEGDHCERCVSGYY 1845
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 65 CRHFTAGRHCHYCKEGYYRDPSRP 88
C +G C C GYYRDPS P
Sbjct: 1778 CPPGYSGHSCEDCAPGYYRDPSGP 1801
>sp|P11047|LAMC1_HUMAN Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3
Length = 1609
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR 83
C+CN +++C F+ ELY+ +G GG C C+ T G HC C+E ++R
Sbjct: 342 CDCNGRSQECYFDPELYRSTGH--GGHCTNCQDNTDGAHCERCRENFFR 388
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
C CN H+ C GVC CR TAG HC C +GYY D
Sbjct: 724 CACNGHSETCD-----------PETGVC-NCRDNTAGPHCEKCSDGYYGD 761
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
G CL+C + TAG +C CK+G++ +P P
Sbjct: 847 GECLKCIYNTAGFYCDRCKDGFFGNPLAP 875
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 61 VCLQCRHFTAGRHCHYCKEGYYRDP 85
VC C T G+ C C +GY+ DP
Sbjct: 791 VCTNCPTGTTGKRCELCDDGYFGDP 815
>sp|P25391|LAMA1_HUMAN Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2
Length = 3075
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 28 DRIFF----QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR 83
D I F Q C C+ HA +C + GVC+ C H T G HC C G+Y
Sbjct: 731 DGILFGGICQPCECHGHAAECNVH------------GVCIACAHNTTGVHCEQCLPGFYG 778
Query: 84 DPSR 87
+PSR
Sbjct: 779 EPSR 782
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 33 QTCNCNNHARKCRFNMELYK------LSGR-SSGGVCLQCRHFTAGRHCHYCKEGYYR 83
+ CNC+N A+ C ++ + K +G+ GGVC+ C T G +C C +GYYR
Sbjct: 325 EACNCHNKAKDCYYDESVAKQKKSLNTAGQFRGGGVCINCLQNTMGINCETCIDGYYR 382
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
C+CNNH+ C N G CL C TAG HC C GYY
Sbjct: 1403 CSCNNHSDTCDPNT-----------GKCLNCGDNTAGDHCDVCTSGYY 1439
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 20 KKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKE 79
+++ S +D C C HA C ++ KL QC H T G C+ C
Sbjct: 255 RRYYYSIKDISVGGMCICYGHASSCPWDETTKKLQ--------CQCEHNTCGESCNRCCP 306
Query: 80 GYYRDPSRPIT 90
GY++ P RP T
Sbjct: 307 GYHQQPWRPGT 317
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 57 SSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
S G CL+C T G HC C +G+Y D
Sbjct: 865 SVTGECLKCLGNTDGAHCERCADGFYGD 892
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2
SV=2
Length = 1639
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 19 LKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCK 78
LK R +S + + CNCN A KC F+ L+ +G GG CL CR G +C CK
Sbjct: 343 LKWKRSTSTEVNECKACNCNGLADKCFFDANLFNRTGH--GGHCLDCRENRDGPNCERCK 400
Query: 79 EGYY 82
E +Y
Sbjct: 401 ENFY 404
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDP 85
G CL+C H TAG HC C G++ DP
Sbjct: 866 GECLKCIHNTAGEHCDQCLSGHFGDP 891
>sp|P02468|LAMC1_MOUSE Laminin subunit gamma-1 OS=Mus musculus GN=Lamc1 PE=1 SV=2
Length = 1607
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR 83
C+CN +++C F+ ELY+ +G GG C CR T G C C+E ++R
Sbjct: 340 CDCNGRSQECYFDPELYRSTGH--GGHCTNCRDNTDGAKCERCRENFFR 386
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 12/50 (24%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
C CN H+ C GVC CR TAG HC C +GYY D
Sbjct: 722 CTCNGHSETCD-----------PETGVC-DCRDNTAGPHCEKCSDGYYGD 759
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
G CL+C + TAG +C CKEG++ +P P
Sbjct: 845 GECLKCIYNTAGFYCDRCKEGFFGNPLAP 873
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 61 VCLQCRHFTAGRHCHYCKEGYYRDP 85
VC C TAG+ C C +GY+ DP
Sbjct: 789 VCTHCPTGTAGKRCELCDDGYFGDP 813
>sp|Q1LVF0|LAMC1_DANRE Laminin subunit gamma-1 OS=Danio rerio GN=lamc1 PE=2 SV=2
Length = 1593
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPS 86
CNCN + +C F+ ELY+ +G GG C C T G C C YYR+ S
Sbjct: 326 CNCNGKSAECYFDPELYRATGH--GGHCRNCADNTDGPKCERCLANYYREAS 375
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
CNCN H+ C G+C C+H TAG C CK+G+Y D
Sbjct: 708 CNCNGHSDTCD-----------PETGMC-NCQHNTAGLSCERCKDGFYGD 745
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRD 84
G CL+C + TAG C CK+G+Y D
Sbjct: 831 GECLKCIYNTAGVFCDRCKQGFYGD 855
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query: 19 LKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCK 78
LK + + D C CN HA +C N E KL VC C+H T G C+ CK
Sbjct: 254 LKSYYYAISDFAVGGRCKCNGHASECVKN-EYSKL-------VC-NCKHNTEGADCNVCK 304
Query: 79 EGYYRDPSRPIT 90
Y P R T
Sbjct: 305 PFYNDRPWRRAT 316
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 61 VCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKACK 96
VC C T G+ C C +G++ DP +AC+
Sbjct: 775 VCTNCPTGTTGKRCELCDDGFFGDPLGEKGPVRACR 810
>sp|Q18823|LAM2_CAEEL Laminin-like protein lam-2 OS=Caenorhabditis elegans GN=lam-2 PE=1
SV=3
Length = 1633
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
CNC+ + +C F+ +L++ +G GG C+ C+ T G HC C ++R P
Sbjct: 347 CNCSQLSNRCYFDQQLFEETGH--GGHCIDCQGNTQGVHCEQCIANHWRRP 395
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
C+C+NH+ C + G C+ C H TAG C C GYY D
Sbjct: 736 CDCHNHSNSCE-----------AESGSCI-CEHNTAGDTCERCARGYYGD 773
>sp|Q8R4F1|NTNG2_MOUSE Netrin-G2 OS=Mus musculus GN=Ntng2 PE=1 SV=2
Length = 589
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 32 FQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITH 91
FQ C C H+ +C + L ++ C+ C+H T G+HC +C+ GYYR+ S +
Sbjct: 410 FQDCECYGHSNRCSYIDFLNVVT-------CVSCKHNTRGQHCQHCRLGYYRNGSAELDD 462
Query: 92 RKAC 95
C
Sbjct: 463 ENVC 466
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 33 QTCNCNNHARKCRF-------NMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDP 85
+ CNC+ A +C + N+ L GGVC+ C H TAG +C C +G++R
Sbjct: 338 EACNCHGKAEECYYDETVASRNLSLNIHGKYIGGGVCINCTHNTAGINCETCVDGFFRPK 397
Query: 86 SRPITHRKACKK 97
+ + C+
Sbjct: 398 GVSPNYPRPCQP 409
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGR--SSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
Q C CN+ N++ Y + G S G CL C+ T GR+C C +GY+ D
Sbjct: 859 QPCQCND-------NLD-YSIPGSCDSLSGSCLICKPGTTGRYCELCADGYFGD 904
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
+ C C HA C G CL C+ T G +C+ C G+Y DP+R
Sbjct: 751 EPCQCFAHAEACD-----------DITGECLNCKDHTGGPYCNECLPGFYGDPTR 794
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 11/48 (22%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
C CN H+ +C VC C+H TAG C C GYY
Sbjct: 1416 CQCNGHSSQCD-----------PETSVCQNCQHHTAGDFCERCALGYY 1452
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 14/62 (22%)
Query: 33 QTCNC------NNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPS 86
Q C C NN + C + RS G +C +C G C C EGY+ PS
Sbjct: 801 QPCACPLNIPSNNFSPTCHLD--------RSLGLICDECPIGYTGPRCERCAEGYFGQPS 852
Query: 87 RP 88
P
Sbjct: 853 VP 854
>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein
OS=Mus musculus GN=Hspg2 PE=1 SV=1
Length = 3707
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
+ CNC+ H+ C G C C+H T G C C+ GYY D R
Sbjct: 1157 ERCNCHGHSETCE-----------PETGACQSCQHHTEGASCEQCQPGYYGDAQR 1200
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 11/53 (20%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
CNCN HA C +Y G CL C+H T G C CK G++ D ++
Sbjct: 764 CNCNGHASSCD---PVY--------GHCLNCQHNTEGPQCDKCKPGFFGDATK 805
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPS 86
+ C CN H+ C G C +C+H TAG C C GYY D +
Sbjct: 1561 ELCECNGHSDLCH-----------PETGACSRCQHNTAGEFCELCATGYYGDAT 1603
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 62 CLQCRHFTAGRHCHYCKEGYYRDPSR 87
C C +GRHC C GYY +PS+
Sbjct: 1234 CDSCSPGHSGRHCERCAPGYYGNPSQ 1259
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.138 0.468
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,349,576
Number of Sequences: 539616
Number of extensions: 1350641
Number of successful extensions: 4014
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3510
Number of HSP's gapped (non-prelim): 443
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)