Query psy12862
Match_columns 98
No_of_seqs 131 out of 1019
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:40:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12862.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12862hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 99.9 2.2E-22 4.9E-27 171.2 4.5 83 15-97 312-401 (1758)
2 KOG3512|consensus 99.8 1.7E-21 3.6E-26 155.0 3.7 82 16-97 308-396 (592)
3 KOG1836|consensus 99.2 1.2E-11 2.6E-16 110.3 3.9 75 12-88 309-390 (1705)
4 KOG3512|consensus 99.0 1.3E-10 2.9E-15 93.3 3.1 61 19-89 262-323 (592)
5 KOG0994|consensus 99.0 2.1E-10 4.6E-15 99.2 4.0 47 31-88 855-901 (1758)
6 cd00055 EGF_Lam Laminin-type e 98.7 2.2E-08 4.8E-13 57.7 4.2 42 34-87 1-45 (50)
7 PF00053 Laminin_EGF: Laminin 98.6 1.5E-08 3.3E-13 57.9 1.4 41 35-87 1-44 (49)
8 smart00180 EGF_Lam Laminin-typ 98.4 2.5E-07 5.4E-12 52.6 3.1 37 35-83 1-40 (46)
9 KOG1836|consensus 98.3 4.9E-07 1.1E-11 81.5 3.9 47 31-89 727-773 (1705)
10 KOG1388|consensus 98.0 3.7E-06 8.1E-11 61.8 1.7 69 3-84 13-88 (217)
11 KOG3509|consensus 96.0 0.0061 1.3E-07 53.2 3.3 47 32-89 751-797 (964)
12 KOG4289|consensus 94.4 0.04 8.7E-07 50.5 3.4 56 11-81 1786-1843(2531)
13 KOG4260|consensus 75.3 2.8 6E-05 32.7 2.6 29 57-86 165-193 (350)
14 KOG1388|consensus 64.2 5.1 0.00011 29.8 1.9 59 18-88 80-141 (217)
15 KOG3509|consensus 58.4 9.7 0.00021 34.0 2.9 30 59-88 825-854 (964)
16 PF11682 DUF3279: Protein of u 40.7 21 0.00046 24.4 1.8 26 59-84 97-123 (128)
17 PF07974 EGF_2: EGF-like domai 39.6 26 0.00055 18.1 1.6 15 59-74 18-32 (32)
18 PF07645 EGF_CA: Calcium-bindi 34.0 16 0.00035 19.5 0.3 16 68-84 20-36 (42)
19 cd00064 FU Furin-like repeats. 32.9 73 0.0016 17.2 3.0 25 60-84 15-42 (49)
20 PF12661 hEGF: Human growth fa 31.1 11 0.00024 15.7 -0.5 9 65-73 4-12 (13)
21 KOG0196|consensus 30.2 1.3E+02 0.0027 27.2 5.1 31 59-90 290-325 (996)
22 KOG4289|consensus 29.5 66 0.0014 31.0 3.4 30 58-88 1737-1771(2531)
23 PHA03099 epidermal growth fact 23.5 42 0.00091 23.3 0.9 28 43-78 57-84 (139)
24 cd00185 TNFR Tumor necrosis fa 22.2 1.2E+02 0.0026 19.0 2.9 30 58-88 20-49 (98)
No 1
>KOG0994|consensus
Probab=99.86 E-value=2.2e-22 Score=171.22 Aligned_cols=83 Identities=42% Similarity=0.838 Sum_probs=78.3
Q ss_pred CCcccccccCCCCCCCC-------ccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCC
Q psy12862 15 GGEHLKKFRCSSRDRIF-------FQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87 (98)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-------C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~ 87 (98)
.=++|.+||.|+||+-+ |+.|+||+|+.+|+||..||.+++++++|+|.+|+|||+|.+||+|+|+||++|.+
T Consensus 312 nCE~C~~fYnDlPWrpAeG~~~neCrkC~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~fYRdprr 391 (1758)
T KOG0994|consen 312 NCEHCAPFYNDLPWRPAEGKTSNECRKCECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPFFYRDPRR 391 (1758)
T ss_pred ChHHhhHhhcCCCCCccCCCCcccccccCCCCCcccccccHHHHhhcCCcccccCccccccccccchhhcCcccccCCCC
Confidence 34679999999999754 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeec
Q psy12862 88 PITHRKACKK 97 (98)
Q Consensus 88 ~~~~p~~C~~ 97 (98)
++++|++|+|
T Consensus 392 ~i~~p~vC~p 401 (1758)
T KOG0994|consen 392 DISDPDVCKP 401 (1758)
T ss_pred CCCCcccccc
Confidence 9999999986
No 2
>KOG3512|consensus
Probab=99.83 E-value=1.7e-21 Score=155.04 Aligned_cols=82 Identities=66% Similarity=1.225 Sum_probs=77.3
Q ss_pred CcccccccCCCCCCCC-------ccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 16 GEHLKKFRCSSRDRIF-------FQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 16 ~~~~~~~~~~~~~~~~-------C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
=+.|||||++|||+++ |++|+||+|+.+|.|+.++|..+++.++|+|++|+|||+|.||+.|++|||+++..+
T Consensus 308 CgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~p 387 (592)
T KOG3512|consen 308 CGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKP 387 (592)
T ss_pred cccccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCC
Confidence 3579999999999986 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeec
Q psy12862 89 ITHRKACKK 97 (98)
Q Consensus 89 ~~~p~~C~~ 97 (98)
+++..+|++
T Consensus 388 l~hrkaCk~ 396 (592)
T KOG3512|consen 388 LTHRKACKA 396 (592)
T ss_pred Cchhhhhhh
Confidence 988888863
No 3
>KOG1836|consensus
Probab=99.19 E-value=1.2e-11 Score=110.28 Aligned_cols=75 Identities=35% Similarity=0.647 Sum_probs=66.6
Q ss_pred CCCCCcccccccCCCCCCCC-------ccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccC
Q psy12862 12 KESGGEHLKKFRCSSRDRIF-------FQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84 (98)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~-------C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~ 84 (98)
...+=+.|-|++.++||+++ |..|+|+|+|..|.||.+++.+++ ++|+|++|++||+|.|||+|..+|||.
T Consensus 309 ~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~~cnc~g~S~ec~~d~~l~r~~~--~gg~c~~c~entag~~CerC~~~f~R~ 386 (1705)
T KOG1836|consen 309 CGLDCERCLPFFNDRPWARATSQTANECEACNCNGRSEECYFDRELDRRTG--GGGHCLDCRENTAGVHCERCLLGFYRS 386 (1705)
T ss_pred ccccccccccchhcchhhhhhhcccCceeeccCCCchHhhhhcHHHHHhhc--CCccccCccccccCcchhhcccccccc
Confidence 34445679999999999654 999999999999999999999987 789999999999999999999999998
Q ss_pred CCCC
Q psy12862 85 PSRP 88 (98)
Q Consensus 85 p~~~ 88 (98)
+..+
T Consensus 387 ~~~~ 390 (1705)
T KOG1836|consen 387 RQVT 390 (1705)
T ss_pred CCCC
Confidence 8544
No 4
>KOG3512|consensus
Probab=99.03 E-value=1.3e-10 Score=93.26 Aligned_cols=61 Identities=36% Similarity=0.702 Sum_probs=49.1
Q ss_pred cccccCCCCC-CCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCCC
Q psy12862 19 LKKFRCSSRD-RIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPI 89 (98)
Q Consensus 19 ~~~~~~~~~~-~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~~ 89 (98)
+..++|+-.+ ++. -+|+|||||.+|.++. .+...| +|.|||+|+.|++|+++||..||...
T Consensus 262 l~rYfYAisdl~Vg-GRCKCNgHAs~Cv~d~--------~~~ltC-dC~HNTaGPdCgrCKpfy~dRPW~ra 323 (592)
T KOG3512|consen 262 LARYFYAISDLAVG-GRCKCNGHASRCVMDE--------SSHLTC-DCEHNTAGPDCGRCKPFYYDRPWGRA 323 (592)
T ss_pred hhhhheecccceee-eeeeecCccceeeecc--------CCceEE-ecccCCCCCCcccccccccCCCcccc
Confidence 3336676555 333 5899999999999874 235889 79999999999999999999998863
No 5
>KOG0994|consensus
Probab=99.02 E-value=2.1e-10 Score=99.20 Aligned_cols=47 Identities=38% Similarity=0.934 Sum_probs=44.2
Q ss_pred CccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 31 FFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 31 ~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
.|++|+|||||+.|++ .+|.|++|+++|+|.+|++|.+|||++|..+
T Consensus 855 eCr~CqCNgHA~~Cd~-----------~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg 901 (1758)
T KOG0994|consen 855 ECRPCQCNGHADTCDP-----------ITGACIDCQDSTTGHSCDRCLDGYYGDPRLG 901 (1758)
T ss_pred cCccccccCcccccCc-----------cccccccccccccccchhhhhccccCCcccC
Confidence 4999999999999985 6899999999999999999999999999986
No 6
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.72 E-value=2.2e-08 Score=57.67 Aligned_cols=42 Identities=43% Similarity=1.047 Sum_probs=36.0
Q ss_pred CCCCCCCCC---CCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCC
Q psy12862 34 TCNCNNHAR---KCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87 (98)
Q Consensus 34 ~C~CngHs~---~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~ 87 (98)
+|.|++++. .|.. .+|+|. |+++++|.+|++|+++||+.|..
T Consensus 1 ~C~C~~~g~~~~~C~~-----------~~G~C~-C~~~~~G~~C~~C~~g~~~~~~~ 45 (50)
T cd00055 1 PCDCNGHGSLSGQCDP-----------GTGQCE-CKPNTTGRRCDRCAPGYYGLPSQ 45 (50)
T ss_pred CCcCcCCCCCCccccC-----------CCCEEe-CCCcCCCCCCCCCCCCCccCCCC
Confidence 488998887 6763 579995 99999999999999999998865
No 7
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.61 E-value=1.5e-08 Score=57.89 Aligned_cols=41 Identities=44% Similarity=1.046 Sum_probs=32.8
Q ss_pred CCCCCCC---CCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCC
Q psy12862 35 CNCNNHA---RKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87 (98)
Q Consensus 35 C~CngHs---~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~ 87 (98)
|+|++++ ..|.. .+|+|. |+++++|++|++|+++||+.+..
T Consensus 1 C~C~~~~~~~~~C~~-----------~~G~C~-C~~~~~G~~C~~C~~g~~~~~~~ 44 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDP-----------STGQCV-CKPGTTGPRCDQCKPGYFGLPSD 44 (49)
T ss_dssp ESSTTCCBCCSSEEE-----------TCEEES-BSTTEESTTS-EE-TTEECSTTS
T ss_pred CcCcCCCCCCCcccC-----------CCCEEe-ccccccCCcCcCCCCccccccCC
Confidence 5788777 56763 589996 99999999999999999998864
No 8
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.42 E-value=2.5e-07 Score=52.58 Aligned_cols=37 Identities=38% Similarity=1.027 Sum_probs=31.2
Q ss_pred CCCC--CCC-CCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCccc
Q psy12862 35 CNCN--NHA-RKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYR 83 (98)
Q Consensus 35 C~Cn--gHs-~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~ 83 (98)
|+|+ |++ ..|.. .+|+|. |+++++|.+|++|++|||+
T Consensus 1 C~C~~~G~~~~~C~~-----------~~G~C~-C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDP-----------DTGQCE-CKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccC-----------CCCEEE-CCCCCCCCCCCcCCCCcCC
Confidence 6777 666 56763 478995 9999999999999999998
No 9
>KOG1836|consensus
Probab=98.31 E-value=4.9e-07 Score=81.52 Aligned_cols=47 Identities=34% Similarity=0.799 Sum_probs=42.7
Q ss_pred CccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCCC
Q psy12862 31 FFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPI 89 (98)
Q Consensus 31 ~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~~ 89 (98)
-|.+|.||||+..|+. .+|.|. |+|||.|.+|++|++|||+.+..+.
T Consensus 727 ~c~~C~cngh~~~Cd~-----------~tG~C~-C~~~t~G~~C~~C~~GfYg~~~~~~ 773 (1705)
T KOG1836|consen 727 PCIPCDCNGHSNICDP-----------RTGQCK-CKHNTFGGQCAQCVDGFYGLPDLGT 773 (1705)
T ss_pred cccccccCCccccccC-----------CCCcee-cccCCCCCchhhhcCCCCCccccCC
Confidence 3789999999999985 589996 9999999999999999999998874
No 10
>KOG1388|consensus
Probab=97.95 E-value=3.7e-06 Score=61.82 Aligned_cols=69 Identities=28% Similarity=0.568 Sum_probs=56.3
Q ss_pred ceecccCCCCCCCCcccccccC---CCC---C-CCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCc
Q psy12862 3 MFEDIDGSDKESGGEHLKKFRC---SSR---D-RIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCH 75 (98)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~---~~~---~-~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce 75 (98)
-.+|++|++.+-.|...-|+-+ ..+ | -+.|..|+||||+.-. ..-+|-.|++.|.|.+|+
T Consensus 13 a~~~~~G~grcm~g~~~~p~d~~~~~~~~~~W~fl~cP~~~cNGh~~c~-------------t~~v~~~~~N~~~g~~c~ 79 (217)
T KOG1388|consen 13 ADGSNTGDGRCMEGHYRGPLDCVQLEQPREIWRFLFCPLCQCNGHSDCN-------------TQHVCWRCENGTTGAHCE 79 (217)
T ss_pred cCCCCCCCCeEEECccccccchhhccCccchhhhhcChHHHhcCCCCcc-------------cceeeeeccCccccccCC
Confidence 3578999999999987777766 333 5 3679999999999833 245677899999999999
Q ss_pred cCCCCcccC
Q psy12862 76 YCKEGYYRD 84 (98)
Q Consensus 76 ~C~~gy~~~ 84 (98)
+|+.+||++
T Consensus 80 kc~~g~~Gd 88 (217)
T KOG1388|consen 80 KCIVGFYGD 88 (217)
T ss_pred ceEEEEEec
Confidence 999999997
No 11
>KOG3509|consensus
Probab=96.02 E-value=0.0061 Score=53.20 Aligned_cols=47 Identities=32% Similarity=0.745 Sum_probs=41.9
Q ss_pred ccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCCC
Q psy12862 32 FQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPI 89 (98)
Q Consensus 32 C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~~ 89 (98)
|..|.|++|+..|.. ..+.|.+|++||+|..|+.|.+|||+++....
T Consensus 751 ~~~c~~~~h~~~c~~-----------~~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~ 797 (964)
T KOG3509|consen 751 CEDCECNSHISQCED-----------DLGYNTDCQNNTEGDRCELCSPGTYGDARRGT 797 (964)
T ss_pred CcccccCCCcccccc-----------cccccccccccCccceeeecCCCccccCccCC
Confidence 567999999999984 45789999999999999999999999998863
No 12
>KOG4289|consensus
Probab=94.41 E-value=0.04 Score=50.51 Aligned_cols=56 Identities=25% Similarity=0.649 Sum_probs=44.7
Q ss_pred CCCCCCcccccccCCCCCCCCccCCCCCC--CCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCc
Q psy12862 11 DKESGGEHLKKFRCSSRDRIFFQTCNCNN--HARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGY 81 (98)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~C~~C~Cng--Hs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy 81 (98)
.|..+-=|||.+||...-+ |.+|+|.- ++..|. ..|+| .|+....|..|.+|-.-|
T Consensus 1786 nKt~G~CqCKe~hy~~~~~--Cl~CdC~~Gs~Sr~C~------------adGqC-~C~pgaiGRqCdrCd~pf 1843 (2531)
T KOG4289|consen 1786 NKTNGQCQCKENHYRPIGS--CLPCDCYFGSDSRECD------------ADGQC-PCKPGAIGRQCDRCDNPF 1843 (2531)
T ss_pred cccCcceeeccccccCCCc--ceeeccccCCCccccc------------CCCcC-CCCCccccccccccCChh
Confidence 4667777899999986666 99999983 445565 47899 799999999999997433
No 13
>KOG4260|consensus
Probab=75.28 E-value=2.8 Score=32.66 Aligned_cols=29 Identities=28% Similarity=0.788 Sum_probs=24.8
Q ss_pred CCceecCCCCCCCCCCCCccCCCCcccCCC
Q psy12862 57 SSGGVCLQCRHFTAGRHCHYCKEGYYRDPS 86 (98)
Q Consensus 57 ~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~ 86 (98)
.+.|.| +|....+|+.|..|-++||-..+
T Consensus 165 ~GsGkC-kC~~GY~Gp~C~~Cg~eyfes~R 193 (350)
T KOG4260|consen 165 EGSGKC-KCETGYTGPLCRYCGIEYFESSR 193 (350)
T ss_pred CCCCcc-cccCCCCCccccccchHHHHhhc
Confidence 357899 79999999999999999995443
No 14
>KOG1388|consensus
Probab=64.17 E-value=5.1 Score=29.79 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=36.5
Q ss_pred ccccccCCCCCCCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCC-CCCCCCCccCCCC--cccCCCCC
Q psy12862 18 HLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRH-FTAGRHCHYCKEG--YYRDPSRP 88 (98)
Q Consensus 18 ~~~~~~~~~~~~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~h-nT~G~~Ce~C~~g--y~~~p~~~ 88 (98)
.|+..|+-....-.|++|+|+|++..|.. ..+.| .|++ ...|.+|++|..- |-+++...
T Consensus 80 kc~~g~~GdtN~g~c~~~~~~g~~~~~~~-----------~~~~c-~c~~kgvvgd~c~~~e~~N~~r~~~~kg 141 (217)
T KOG1388|consen 80 KCIVGFYGDTNGGKCQPCDCNGGASACVT-----------LTGKC-FCTTKGVVGDLCPKCEVPNRYRGKPLKG 141 (217)
T ss_pred ceEEEEEecCCCCccCHhhhcCCeeeeec-----------cCCcc-ccccceEecccCcccccccccccCcccc
Confidence 35555554434456999999999998875 35556 3533 3456677776553 44555443
No 15
>KOG3509|consensus
Probab=58.43 E-value=9.7 Score=33.97 Aligned_cols=30 Identities=40% Similarity=0.751 Sum_probs=26.7
Q ss_pred ceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 59 GGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 59 ~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
...|..|.+|++|.+|++++++|++.+..+
T Consensus 825 ~~~~~~~p~~~~g~~~~~~~~~~~~~atdg 854 (964)
T KOG3509|consen 825 GPGCLLCPHNTEGTTCERVKAGYYGFATDG 854 (964)
T ss_pred CCCcccCCCCccccchhhhccccccccCcC
Confidence 446889999999999999999999988775
No 16
>PF11682 DUF3279: Protein of unknown function (DUF3279); InterPro: IPR021696 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=40.70 E-value=21 Score=24.41 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=21.7
Q ss_pred ceecCCCCCCCCCC-CCccCCCCcccC
Q psy12862 59 GGVCLQCRHFTAGR-HCHYCKEGYYRD 84 (98)
Q Consensus 59 ~g~C~~C~hnT~G~-~Ce~C~~gy~~~ 84 (98)
.=.|.-|.++..|. .|..|..|-|-.
T Consensus 97 ~W~Cv~C~~~Y~GeK~C~~C~tGiYS~ 123 (128)
T PF11682_consen 97 DWHCVMCGNHYHGEKYCPKCGTGIYSI 123 (128)
T ss_pred eEEEecCCCccCcCEecCCCCCcccce
Confidence 45688999999997 799999998843
No 17
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=39.62 E-value=26 Score=18.05 Aligned_cols=15 Identities=33% Similarity=0.771 Sum_probs=8.7
Q ss_pred ceecCCCCCCCCCCCC
Q psy12862 59 GGVCLQCRHFTAGRHC 74 (98)
Q Consensus 59 ~g~C~~C~hnT~G~~C 74 (98)
.++| .|....+|+.|
T Consensus 18 ~g~C-~C~~g~~G~~C 32 (32)
T PF07974_consen 18 CGRC-VCDSGYTGPDC 32 (32)
T ss_pred CCEE-ECCCCCcCCCC
Confidence 3666 46666666554
No 18
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=33.98 E-value=16 Score=19.49 Aligned_cols=16 Identities=38% Similarity=0.812 Sum_probs=10.6
Q ss_pred CCCCC-CCccCCCCcccC
Q psy12862 68 FTAGR-HCHYCKEGYYRD 84 (98)
Q Consensus 68 nT~G~-~Ce~C~~gy~~~ 84 (98)
||.|. .|. |.+||...
T Consensus 20 N~~Gsy~C~-C~~Gy~~~ 36 (42)
T PF07645_consen 20 NTEGSYSCS-CPPGYELN 36 (42)
T ss_dssp EETTEEEEE-ESTTEEEC
T ss_pred cCCCCEEee-CCCCcEEC
Confidence 55554 564 89999843
No 19
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=32.91 E-value=73 Score=17.16 Aligned_cols=25 Identities=44% Similarity=0.889 Sum_probs=16.1
Q ss_pred eecCCCCCCC--CCCCCc-cCCCCcccC
Q psy12862 60 GVCLQCRHFT--AGRHCH-YCKEGYYRD 84 (98)
Q Consensus 60 g~C~~C~hnT--~G~~Ce-~C~~gy~~~ 84 (98)
..|..|.+.. .+..|. .|.++||.+
T Consensus 15 ~~C~~C~~~~~~~~~~Cv~~C~~~~~~~ 42 (49)
T cd00064 15 DQCTSCRHGFYLDGGTCVSECPEGTYAD 42 (49)
T ss_pred CcCccCcCccCCCCCcccccCCCCceec
Confidence 4466666665 445565 688888875
No 20
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=31.12 E-value=11 Score=15.73 Aligned_cols=9 Identities=22% Similarity=0.309 Sum_probs=3.1
Q ss_pred CCCCCCCCC
Q psy12862 65 CRHFTAGRH 73 (98)
Q Consensus 65 C~hnT~G~~ 73 (98)
|....+|.+
T Consensus 4 C~~G~~G~~ 12 (13)
T PF12661_consen 4 CPPGWTGPN 12 (13)
T ss_dssp E-TTEETTT
T ss_pred CcCCCcCCC
Confidence 333334433
No 21
>KOG0196|consensus
Probab=30.23 E-value=1.3e+02 Score=27.17 Aligned_cols=31 Identities=39% Similarity=0.958 Sum_probs=22.3
Q ss_pred ceecCCCCCCC----CC-CCCccCCCCcccCCCCCCC
Q psy12862 59 GGVCLQCRHFT----AG-RHCHYCKEGYYRDPSRPIT 90 (98)
Q Consensus 59 ~g~C~~C~hnT----~G-~~Ce~C~~gy~~~p~~~~~ 90 (98)
...|..|..|+ +| +.| +|..||||.+..+..
T Consensus 290 ~~~C~~CP~~S~s~~ega~~C-~C~~gyyRA~~Dp~~ 325 (996)
T KOG0196|consen 290 DSLCLPCPPNSHSSSEGATSC-TCENGYYRADSDPPS 325 (996)
T ss_pred CCCCCCCCCCCCCCCCCCCcc-cccCCcccCCCCCCC
Confidence 45677777654 33 466 899999999887753
No 22
>KOG4289|consensus
Probab=29.50 E-value=66 Score=30.97 Aligned_cols=30 Identities=27% Similarity=0.666 Sum_probs=25.3
Q ss_pred CceecCCCCCCCCCCCCcc-----CCCCcccCCCCC
Q psy12862 58 SGGVCLQCRHFTAGRHCHY-----CKEGYYRDPSRP 88 (98)
Q Consensus 58 ~~g~C~~C~hnT~G~~Ce~-----C~~gy~~~p~~~ 88 (98)
.+..| .|..+..|++||. |..|+|+.|.-+
T Consensus 1737 ~GY~C-~C~~g~~G~~Ce~~~dq~CPrGWWG~P~Cg 1771 (2531)
T KOG4289|consen 1737 HGYTC-ECPPGYTGPYCELRADQPCPRGWWGFPTCG 1771 (2531)
T ss_pred CceeE-ECCCcccCcchhhhccCCCCCcccCCCCcc
Confidence 46788 6999999999984 889999987665
No 23
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=23.53 E-value=42 Score=23.27 Aligned_cols=28 Identities=25% Similarity=0.630 Sum_probs=20.9
Q ss_pred CCccchhhhhccCCCCceecCCCCCCCCCCCCccCC
Q psy12862 43 KCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCK 78 (98)
Q Consensus 43 ~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~ 78 (98)
.|.|..++ ....| +|..+..|..||.--
T Consensus 57 ~C~yI~dl-------~~~~C-rC~~GYtGeRCEh~d 84 (139)
T PHA03099 57 DCIHARDI-------DGMYC-RCSHGYTGIRCQHVV 84 (139)
T ss_pred EEEeeccC-------CCcee-ECCCCccccccccee
Confidence 68776543 35668 799999999998754
No 24
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=22.24 E-value=1.2e+02 Score=19.00 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=20.2
Q ss_pred CceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 58 SGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 58 ~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
+.++-..|. .+....|+.|.+|+|.+....
T Consensus 20 G~~~~~~C~-~~~~t~C~~C~~g~ys~~~~~ 49 (98)
T cd00185 20 GTYLSKDCT-PGSDTVCEPCPPGTYTDSWNH 49 (98)
T ss_pred CccCCCcCC-CCCCCeecCCCCCCcccCCCC
Confidence 444444565 345678999999999776543
Done!