Query psy12862
Match_columns 98
No_of_seqs 131 out of 1019
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 21:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y38_A Laminin subunit alpha-5 99.7 1.7E-18 5.9E-23 135.3 6.0 81 17-97 300-394 (403)
2 4aqt_A Laminin subunit gamma-1 99.3 1.3E-12 4.4E-17 101.2 3.6 69 17-87 286-361 (375)
3 2y38_A Laminin subunit alpha-5 99.2 2.6E-12 8.8E-17 100.4 2.8 67 16-88 247-313 (403)
4 3tbd_A Netrin-G2, laminet-2; l 99.2 4.9E-12 1.7E-16 97.0 2.3 63 16-88 251-313 (338)
5 3zyj_B Netrin-G1; cell adhesio 99.1 4.5E-11 1.5E-15 94.0 3.0 63 16-88 278-340 (426)
6 1klo_A Laminin; glycoprotein; 98.9 4.6E-10 1.6E-14 77.3 1.6 59 18-87 34-102 (162)
7 4aqt_A Laminin subunit gamma-1 98.8 1.2E-09 4.1E-14 84.5 0.6 63 17-88 237-299 (375)
8 1klo_A Laminin; glycoprotein; 98.5 3.4E-08 1.2E-12 67.9 1.9 53 35-95 1-53 (162)
9 4aqs_A Laminin subunit beta-1; 98.5 1.6E-07 5.4E-12 74.3 5.1 77 18-94 294-377 (525)
10 4aqs_A Laminin subunit beta-1; 98.2 2.7E-07 9.2E-12 73.0 0.7 70 18-88 237-306 (525)
11 3zyj_B Netrin-G1; cell adhesio 97.6 1.8E-05 6.3E-10 62.2 1.8 54 17-85 327-395 (426)
12 2gy5_A Angiopoietin-1 receptor 82.7 0.49 1.7E-05 36.6 1.6 27 58-85 214-241 (423)
13 2gy5_A Angiopoietin-1 receptor 69.5 1.3 4.4E-05 34.2 0.7 26 58-84 261-287 (423)
14 3ssb_I IMPI alpha, inducible m 49.7 2.3 8E-05 21.4 -0.7 12 76-87 8-19 (32)
15 1p1p_A AA-conotoxin PIVA; neur 31.1 40 0.0014 15.9 2.1 18 27-44 6-23 (26)
16 3e50_C Protransforming growth 27.9 23 0.0008 19.3 1.1 17 59-76 29-45 (50)
17 1edm_B Factor IX; epidermal gr 25.8 34 0.0012 16.6 1.5 17 58-75 22-38 (39)
18 2ygq_A WIF-1, WNT inhibitory f 23.7 64 0.0022 23.6 3.2 11 65-75 201-211 (324)
19 1k36_A Epiregulin; EGF-like fo 22.9 32 0.0011 18.0 1.1 17 59-76 27-43 (46)
20 1egf_A Epidermal growth factor 22.4 69 0.0024 16.9 2.5 24 58-82 27-50 (53)
21 1ha8_A Pheromone, ER-23; NMR { 21.7 14 0.00049 20.0 -0.5 23 59-82 10-32 (51)
22 1iox_A Betacellulin; EGF-like 20.9 34 0.0012 18.4 0.9 17 59-76 29-45 (50)
23 2kqr_A Asparaginyl-tRNA synthe 20.2 65 0.0022 20.6 2.3 22 1-22 3-24 (113)
No 1
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=99.74 E-value=1.7e-18 Score=135.29 Aligned_cols=81 Identities=30% Similarity=0.700 Sum_probs=72.0
Q ss_pred cccccccCCCCCCC-------CccCCCCCCCCCCCccchhhhhccCC-------CCceecCCCCCCCCCCCCccCCCCcc
Q psy12862 17 EHLKKFRCSSRDRI-------FFQTCNCNNHARKCRFNMELYKLSGR-------SSGGVCLQCRHFTAGRHCHYCKEGYY 82 (98)
Q Consensus 17 ~~~~~~~~~~~~~~-------~C~~C~CngHs~~C~~d~~~~~~~~~-------~~~g~C~~C~hnT~G~~Ce~C~~gy~ 82 (98)
+.|+|.|+.+||.. .|++|+||+|+..|.|+++++..++. .++|+|++|+|||+|.+||+|++|||
T Consensus 300 ErC~pGy~g~p~~~at~~~~~~C~pC~Cnghs~~C~~d~~~~~~~~s~~~~~~~~~~G~C~~C~~nt~G~~CErC~~GYy 379 (403)
T 2y38_A 300 DRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFF 379 (403)
T ss_dssp CEECTTCCSSCCCCCCSSCCCCCCCCCCTTSCSCEEECHHHHHTTCCCCTTSCSCCCEEESSCCSSEESTTSCEECTTCE
T ss_pred CCCCccccCCcccccccCCCccccccccCCCCcccccCcccccccccccccccCCCCCCCCCCcCcCcCCCCCcCCCCcc
Confidence 45999999999853 59999999999999999887765432 45899999999999999999999999
Q ss_pred cCCCCCCCCCCCeec
Q psy12862 83 RDPSRPITHRKACKK 97 (98)
Q Consensus 83 ~~p~~~~~~p~~C~~ 97 (98)
++|..++.++++|+|
T Consensus 380 g~p~~~~~~~~~C~~ 394 (403)
T 2y38_A 380 RAPDQPLDSPHVCRP 394 (403)
T ss_dssp ECTTSCTTSTTSEEC
T ss_pred CCCCCCCCCCCcccc
Confidence 999999999999987
No 2
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=99.28 E-value=1.3e-12 Score=101.18 Aligned_cols=69 Identities=32% Similarity=0.691 Sum_probs=57.9
Q ss_pred cccccccCCCCCCC-------CccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCC
Q psy12862 17 EHLKKFRCSSRDRI-------FFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87 (98)
Q Consensus 17 ~~~~~~~~~~~~~~-------~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~ 87 (98)
+.|.+.|+..||.. .|++|+||+|+..|.++..+.... ..+|+|.+|++||+|.+||+|++|||+.+..
T Consensus 286 e~C~~gy~~~p~~~g~~~~~~~C~~C~Cn~~g~~C~~d~~~~~c~--~~~G~C~~C~~n~~G~~Ce~C~~Gyyg~~~~ 361 (375)
T 4aqt_A 286 EKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRST--GHGGHCTNCRDNTDGAKCERCRENFFRLGNT 361 (375)
T ss_dssp CEECTTCCSSCCCCCCSSCCCCCCCCCGGGSCSCEEECHHHHHHS--SCCEEECSCTTTEESTTSCEECSSEECCTTC
T ss_pred ccCCCCCcCCCCCCCccCCCCCCCCCcCcCCCCCcccccccCccC--CCCCCCCCCCCCCcCCCCCCCCcCcccCcCC
Confidence 55788999988764 499999999999999887665443 3589999999999999999999999997643
No 3
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=99.23 E-value=2.6e-12 Score=100.43 Aligned_cols=67 Identities=25% Similarity=0.516 Sum_probs=52.2
Q ss_pred CcccccccCCCCCCCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 16 GEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 16 ~~~~~~~~~~~~~~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
.+.++.+||+..+.....+|+|||||+.|.++.. .....|+| .|+|||+|.+||+|++|||++|+.+
T Consensus 247 ~~~~~~yyyai~~~~vgg~C~CnGHA~~C~~~~~-----~~~~~g~C-~C~hnT~G~~CErC~pGy~g~p~~~ 313 (403)
T 2y38_A 247 PTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDP-----LDPFRLQC-ACQHNTCGGSCDRCCPGFNQQPWKP 313 (403)
T ss_dssp TTTGGGCCCEEEEEEEEEECCCTTBCSCEEESCT-----TSTTCEEE-CCCTTEESSSCCEECTTCCSSCCCC
T ss_pred ccccccceeecccCccccccccCCCccccCCCCC-----CCccceEe-ECcCcCcCCCCCCCCccccCCcccc
Confidence 3446788887666555678999999999986421 11235889 7999999999999999999998754
No 4
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI, LE-domain, N neuronal cell adhesion molecule, netrin G ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens} PDB: 3zyg_A* 3zyi_B*
Probab=99.19 E-value=4.9e-12 Score=96.97 Aligned_cols=63 Identities=29% Similarity=0.583 Sum_probs=54.4
Q ss_pred CcccccccCCCCCCCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 16 GEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 16 ~~~~~~~~~~~~~~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
.+.++.+||+-.+...-.+|.|||||+.|.++. +.++| .|+|||+|++||+|+++|++.|+.+
T Consensus 251 ~~~~~~yyYAI~di~v~G~C~CnGHA~~C~~~~---------g~~~C-~C~HnT~G~~Ce~C~p~y~~~pw~p 313 (338)
T 3tbd_A 251 RENLYKYFYAISNIEVIGRCKCNLHANLCSMRE---------GSLQC-ECEHNTTGPDCGKCKKNFRTRSWRA 313 (338)
T ss_dssp TTCGGGCCCEEEEEECEEEECCTTBCSCEEEET---------TEEEE-CCCTTEESTTSCEECTTCBSSCCCC
T ss_pred ccccceeEEEeecceeeccccccCCcCccCCCC---------CCcee-cCCCCCCCCCCcccCccccCCCCCC
Confidence 356788999888866667899999999998753 45789 8999999999999999999999986
No 5
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.07 E-value=4.5e-11 Score=94.02 Aligned_cols=63 Identities=33% Similarity=0.640 Sum_probs=54.7
Q ss_pred CcccccccCCCCCCCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 16 GEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 16 ~~~~~~~~~~~~~~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
...++.+||+-.+...+.+|+||||+..|.++. ++++|. |+|||+|++||+|+++||+.|+.+
T Consensus 278 ~~~~~~yyYAI~d~~v~g~C~CnGHas~C~~~~---------g~~~C~-C~~~ttG~~CE~C~pgy~~~P~~~ 340 (426)
T 3zyj_B 278 ELHLARYFYAISDIKVRGRCKCNLHATVCVYDN---------SKLTCE-CEHNTTGPDCGKCKKNYQGRPWSP 340 (426)
T ss_dssp SSCGGGCCCEEEEEECEEEECCSSSCSCEEEET---------TEEEEC-CCTTEESSSSCEECTTCCSSCCCC
T ss_pred ccccceecceeecccccccCcCCCchhhcCCCC---------CCceee-CCCCCcCCCccccccccccCcccC
Confidence 456788999988877789999999999998753 458996 999999999999999999988864
No 6
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=98.87 E-value=4.6e-10 Score=77.34 Aligned_cols=59 Identities=29% Similarity=0.605 Sum_probs=48.5
Q ss_pred ccccccCCCCCC-----CCccCCCCCCCCC-----CCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCC
Q psy12862 18 HLKKFRCSSRDR-----IFFQTCNCNNHAR-----KCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSR 87 (98)
Q Consensus 18 ~~~~~~~~~~~~-----~~C~~C~CngHs~-----~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~ 87 (98)
.|++.|+.+++. ..|++|+|++|++ .|. ..+|+|++|+++|+|.+||+|++|||+++..
T Consensus 34 ~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~-----------~~tG~C~~C~~g~~G~~Ce~C~~Gy~g~~~~ 102 (162)
T 1klo_A 34 LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCN-----------RLTGECLKCIYNTAGFYCDRCKEGFFGNPLA 102 (162)
T ss_dssp EECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBC-----------TTTCCBCCBCTTEETTTTCEECTTEEECTTC
T ss_pred CCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCccc-----------CCCCcccCCCCCCcCCCcCcCchhhcCCccc
Confidence 477778877765 3699999999864 343 3578998899999999999999999998865
No 7
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=98.75 E-value=1.2e-09 Score=84.54 Aligned_cols=63 Identities=30% Similarity=0.537 Sum_probs=50.9
Q ss_pred cccccccCCCCCCCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 17 EHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 17 ~~~~~~~~~~~~~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
..++.+||+-.+-....+|+||||+..|..+. ..++.| .|++||+|.+|++|++|||+.|..+
T Consensus 237 ~~~~~yyYai~di~v~g~C~Cngh~s~c~~~~--------~~~~~C-~C~~nt~G~~Ce~C~~gy~~~p~~~ 299 (375)
T 4aqt_A 237 KVLKSYYYAISDFAVGGRCKCNGHASECVKNE--------FDKLMC-NCKHNTYGVDCEKCLPFFNDRPWRR 299 (375)
T ss_dssp HHHTTCCCEEEEEEEEEEECCTTSCSCEEECT--------TSCEEE-CCCTTEESTTSCEECTTCCSSCCCC
T ss_pred cccccceeeecccccCceecCCCCCcccCCCC--------CCCeee-eCcCCCcCCCcccCCCCCcCCCCCC
Confidence 34677888877766667899999999886543 245666 7999999999999999999998764
No 8
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=98.49 E-value=3.4e-08 Score=67.91 Aligned_cols=53 Identities=30% Similarity=0.772 Sum_probs=38.1
Q ss_pred CCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCe
Q psy12862 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKAC 95 (98)
Q Consensus 35 C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~~~~p~~C 95 (98)
|.|++++ +|..++. .+.++|+.|.++|+|.+||+|++|||++|......+..|
T Consensus 1 C~C~~~g-~C~~~~~-------~g~~~C~~C~~g~~G~~Ce~C~~g~~g~~~~~~~~~~~C 53 (162)
T 1klo_A 1 CPCPGGS-SCAIVPK-------TKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53 (162)
T ss_dssp CCSCTTC-CEEECSS-------SCCEEECSCCTTEESTTSCEECTTEEEETTCTTSSCEEE
T ss_pred CcCcCcC-cccccCC-------CCCEEeCCCCCCCcCCCCcCCCCCCcCCcccccCCCCCC
Confidence 5677765 4764320 135899889999999999999999999887643333333
No 9
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=98.45 E-value=1.6e-07 Score=74.28 Aligned_cols=77 Identities=36% Similarity=0.751 Sum_probs=62.9
Q ss_pred ccccccCCCCCCC-------CccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCCCC
Q psy12862 18 HLKKFRCSSRDRI-------FFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPIT 90 (98)
Q Consensus 18 ~~~~~~~~~~~~~-------~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~~~ 90 (98)
.+.+.+...||.. .|..|.|++|+..|.++..+........+++|..|.++++|.+|+.|+++||+.+.....
T Consensus 294 ~C~~g~~~~p~~~~~c~~~~~~~~C~C~~~~~~C~~d~~~c~~~~~~~gg~C~~C~~g~~G~~Ce~C~~g~~~~~~~~~~ 373 (525)
T 4aqs_A 294 LCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIR 373 (525)
T ss_dssp EECTTCCSSCCCCCBTTBCCCCCCCCCTTSCSEEEECHHHHHHTTSSCCEEEESCCTTEESTTSCEECTTEEECSSSCTT
T ss_pred CCCCccCCCccCCCcccCCCcccccccCCCCCCCCCCcccccccCccCCCcccCCCCCCCCCCcccccCcccccCCCCCC
Confidence 3567777777753 367899999999999998888777777789999999999999999999999998877654
Q ss_pred CCCC
Q psy12862 91 HRKA 94 (98)
Q Consensus 91 ~p~~ 94 (98)
.+..
T Consensus 374 ~~~~ 377 (525)
T 4aqs_A 374 DPNL 377 (525)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 4443
No 10
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=98.18 E-value=2.7e-07 Score=72.98 Aligned_cols=70 Identities=29% Similarity=0.498 Sum_probs=50.0
Q ss_pred ccccccCCCCCCCCccCCCCCCCCCCCccchhhhhccCCCCceecCCCCCCCCCCCCccCCCCcccCCCCC
Q psy12862 18 HLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88 (98)
Q Consensus 18 ~~~~~~~~~~~~~~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~C~hnT~G~~Ce~C~~gy~~~p~~~ 88 (98)
..+.+||+-.+...=-+|.||||+..|.+....-........+.| .|+++++|.+||+|.++|+..|...
T Consensus 237 ~~~~~~Yai~di~v~grC~CnGHa~~C~p~~g~~~~~~g~~~g~C-~C~~G~~G~~Ce~C~~g~~~~p~~~ 306 (525)
T 4aqs_A 237 IREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHC-MCRHNTKGLNCELCMDFYHDLPWRP 306 (525)
T ss_dssp HHTTCCCEEEEEEEEEECCCTTBCSCEECC------CCSCCCCEE-CCCTTEESSSSCEECTTCCSSCCCC
T ss_pred ccccccEEEEeeEECeEeccCCccccCCCcCCcccCCCCCcCccc-cCcCCCcCCCCcCCCCccCCCccCC
Confidence 356778876653222479999999999876433333333457889 6999999999999999999988764
No 11
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.59 E-value=1.8e-05 Score=62.17 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=17.1
Q ss_pred cccccccCCCCCCC------------CccCCCCCCCCCCCccchhhhhccCCCCceecCC---CCCCCCCCCCccCCCCc
Q psy12862 17 EHLKKFRCSSRDRI------------FFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQ---CRHFTAGRHCHYCKEGY 81 (98)
Q Consensus 17 ~~~~~~~~~~~~~~------------~C~~C~CngHs~~C~~d~~~~~~~~~~~~g~C~~---C~hnT~G~~Ce~C~~gy 81 (98)
+.|+|.++++||+. .|++|+|++|+..|+.+ .+.|.+ |.+++ .| .|++||
T Consensus 327 E~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~-----------t~~C~ngg~C~~~~---~C-~C~~G~ 391 (426)
T 3zyj_B 327 GKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNE-----------LLHCQNGGTCHNNV---RC-LCPAAY 391 (426)
T ss_dssp CEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC-----------------------------------------------
T ss_pred cccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccC-----------cccCCCCCCcCCCC---CC-cCCCCC
Confidence 45889999998864 39999999999999743 345542 66665 88 889998
Q ss_pred ccCC
Q psy12862 82 YRDP 85 (98)
Q Consensus 82 ~~~p 85 (98)
++..
T Consensus 392 ~G~~ 395 (426)
T 3zyj_B 392 TGIL 395 (426)
T ss_dssp ----
T ss_pred cCCC
Confidence 8854
No 12
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=82.69 E-value=0.49 Score=36.57 Aligned_cols=27 Identities=26% Similarity=0.573 Sum_probs=23.0
Q ss_pred CceecCCCCCCCCCCCCcc-CCCCcccCC
Q psy12862 58 SGGVCLQCRHFTAGRHCHY-CKEGYYRDP 85 (98)
Q Consensus 58 ~~g~C~~C~hnT~G~~Ce~-C~~gy~~~p 85 (98)
..+.| .|..+.+|.+|+. |.++||+..
T Consensus 214 ~~g~C-~C~~G~~G~~Ce~~C~~g~~g~~ 241 (423)
T 2gy5_A 214 DTGEC-ICPPGFMGRTCEKACELHTFGRT 241 (423)
T ss_dssp TTCCE-ECCTTEESTTSCEECCTTEESTT
T ss_pred CCCcE-eCCCCccCCCcccccCCCCCCCC
Confidence 35789 5999999999997 999999754
No 13
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=69.52 E-value=1.3 Score=34.20 Aligned_cols=26 Identities=27% Similarity=0.639 Sum_probs=22.6
Q ss_pred CceecCCCCCCCCCCCCcc-CCCCcccC
Q psy12862 58 SGGVCLQCRHFTAGRHCHY-CKEGYYRD 84 (98)
Q Consensus 58 ~~g~C~~C~hnT~G~~Ce~-C~~gy~~~ 84 (98)
..+.| .|..+.+|.+|+. |.+||+++
T Consensus 261 ~~~~C-~C~~G~~G~~C~~~C~~G~~G~ 287 (423)
T 2gy5_A 261 DPYGC-SCATGWKGLQCNEACHPGFYGP 287 (423)
T ss_dssp TTTEE-ECCBTCBSGGGCBCCCTTBCSB
T ss_pred CCCeE-EeCCCcccccccCccCCCCcCC
Confidence 46788 6999999999997 99999974
No 14
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=49.65 E-value=2.3 Score=21.43 Aligned_cols=12 Identities=50% Similarity=1.190 Sum_probs=9.1
Q ss_pred cCCCCcccCCCC
Q psy12862 76 YCKEGYYRDPSR 87 (98)
Q Consensus 76 ~C~~gy~~~p~~ 87 (98)
.|++||+++...
T Consensus 8 ~C~~G~vrn~~G 19 (32)
T 3ssb_I 8 YCEDGYARDVNG 19 (32)
T ss_dssp EECTTEEECTTS
T ss_pred CcCCCcEECCCC
Confidence 578999988643
No 15
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=31.06 E-value=40 Score=15.91 Aligned_cols=18 Identities=17% Similarity=0.597 Sum_probs=12.3
Q ss_pred CCCCCccCCCCCCCCCCC
Q psy12862 27 RDRIFFQTCNCNNHARKC 44 (98)
Q Consensus 27 ~~~~~C~~C~CngHs~~C 44 (98)
+...+|.+|.|.+.-..|
T Consensus 6 ypnaachpc~c~~rp~yc 23 (26)
T 1p1p_A 6 YPNAACHPCSCKDRPSYC 23 (26)
T ss_dssp SCCSSCCTTTSTTCCGGG
T ss_pred CCCccccccccCCCCCcc
Confidence 344578889888765544
No 16
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=27.86 E-value=23 Score=19.28 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=11.8
Q ss_pred ceecCCCCCCCCCCCCcc
Q psy12862 59 GGVCLQCRHFTAGRHCHY 76 (98)
Q Consensus 59 ~g~C~~C~hnT~G~~Ce~ 76 (98)
...| .|..+.+|..||.
T Consensus 29 ~~~C-~C~~gy~G~RCe~ 45 (50)
T 3e50_C 29 KPAC-VCHSGYVGARCEH 45 (50)
T ss_pred CeEE-ECCCCCcccCCCc
Confidence 3466 5777888877764
No 17
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=25.85 E-value=34 Score=16.64 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=11.4
Q ss_pred CceecCCCCCCCCCCCCc
Q psy12862 58 SGGVCLQCRHFTAGRHCH 75 (98)
Q Consensus 58 ~~g~C~~C~hnT~G~~Ce 75 (98)
+...| .|....+|.+||
T Consensus 22 ~~~~C-~C~~G~~G~~Ce 38 (39)
T 1edm_B 22 NSYEC-WCPFGFEGKNCE 38 (39)
T ss_dssp TEEEE-ECCTTCCSTTSC
T ss_pred CceEe-ECCCCCcCCccC
Confidence 34567 477777777775
No 18
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Probab=23.68 E-value=64 Score=23.57 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=6.0
Q ss_pred CCCCCCCCCCc
Q psy12862 65 CRHFTAGRHCH 75 (98)
Q Consensus 65 C~hnT~G~~Ce 75 (98)
|....+|.+|+
T Consensus 201 C~~G~~G~~C~ 211 (324)
T 2ygq_A 201 CPPGFYGVNCD 211 (324)
T ss_dssp CCTTCBTTTTC
T ss_pred CCCCccCCCcc
Confidence 55555555554
No 19
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Probab=22.94 E-value=32 Score=17.98 Aligned_cols=17 Identities=24% Similarity=0.581 Sum_probs=12.8
Q ss_pred ceecCCCCCCCCCCCCcc
Q psy12862 59 GGVCLQCRHFTAGRHCHY 76 (98)
Q Consensus 59 ~g~C~~C~hnT~G~~Ce~ 76 (98)
...| .|....+|.+||.
T Consensus 27 ~~~C-~C~~GytG~~Ce~ 43 (46)
T 1k36_A 27 QNYC-RCEVGYTGVRCEH 43 (46)
T ss_dssp EEEE-EECTTCSSTTSCC
T ss_pred CEEE-ECCCCCccCCCCc
Confidence 4567 5888888888874
No 20
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Probab=22.44 E-value=69 Score=16.85 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=16.9
Q ss_pred CceecCCCCCCCCCCCCccCCCCcc
Q psy12862 58 SGGVCLQCRHFTAGRHCHYCKEGYY 82 (98)
Q Consensus 58 ~~g~C~~C~hnT~G~~Ce~C~~gy~ 82 (98)
+...| .|....+|.+||.=...|+
T Consensus 27 ~~~~C-~C~~G~~G~~Ce~~~~~~~ 50 (53)
T 1egf_A 27 DSYTC-NCVIGYSGDRCQTRDLRWW 50 (53)
T ss_dssp SCEEE-ECCTTCCSSSSCCCSCCCC
T ss_pred CCEEE-ECCCCCcCCcCCccCcccc
Confidence 45678 5888889998877444443
No 21
>1ha8_A Pheromone, ER-23; NMR {Euplotes raikovi} SCOP: g.58.1.1
Probab=21.68 E-value=14 Score=20.01 Aligned_cols=23 Identities=39% Similarity=0.899 Sum_probs=15.2
Q ss_pred ceecCCCCCCCCCCCCccCCCCcc
Q psy12862 59 GGVCLQCRHFTAGRHCHYCKEGYY 82 (98)
Q Consensus 59 ~g~C~~C~hnT~G~~Ce~C~~gy~ 82 (98)
+|-|.-|.+|-+|+ |..|..||-
T Consensus 10 ggdcttcfnngtgp-canclagyp 32 (51)
T 1ha8_A 10 GGDCTTCFNNGTGP-CANCLAGYP 32 (51)
T ss_dssp TCCSHHHHTTTTSS-TTTTTSSCT
T ss_pred CCccceeecCCCcc-hhhhhccCC
Confidence 45565667777776 667777764
No 22
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Probab=20.90 E-value=34 Score=18.39 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.5
Q ss_pred ceecCCCCCCCCCCCCcc
Q psy12862 59 GGVCLQCRHFTAGRHCHY 76 (98)
Q Consensus 59 ~g~C~~C~hnT~G~~Ce~ 76 (98)
...| .|..+.+|..||.
T Consensus 29 ~~~C-~C~~gy~G~RCe~ 45 (50)
T 1iox_A 29 TPSC-VCDEGYIGARCER 45 (50)
T ss_dssp EEEE-CCCTTEETTTTCE
T ss_pred CeEE-ECCCCcccCCCCe
Confidence 4567 6889999988876
No 23
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, ATP-binding, ligas nucleotide-binding, protein biosynthesis; NMR {Brugia malayi}
Probab=20.16 E-value=65 Score=20.57 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=17.6
Q ss_pred CCceecccCCCCCCCCcccccc
Q psy12862 1 MTMFEDIDGSDKESGGEHLKKF 22 (98)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (98)
|++|-|-+|+|....|...+||
T Consensus 3 m~iYi~e~G~D~~g~Gte~kPf 24 (113)
T 2kqr_A 3 MTVYICPETGDDGNDGSELKPL 24 (113)
T ss_dssp CCEEECTTTSCTTSCCSSSSCB
T ss_pred ceEEeCCCCCcCCCCCchhccH
Confidence 4556666699998999999998
Done!