RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12862
(98 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 68.2 bits (166), Expect = 4e-15
Identities = 27/64 (42%), Positives = 38/64 (59%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+ CNCN H+ C F+M ++ +G SGGVC C+H T GR+C CK Y++ P R I
Sbjct: 316 KKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDP 375
Query: 93 KACK 96
C+
Sbjct: 376 NLCE 379
Score = 47.4 bits (112), Expect = 8e-08
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
C C HA +C + + G C CRH T G +C C + Y+ P RP R
Sbjct: 252 GNCFCYGHASECAPVDGVNEEVEGMVHGHC-MCRHNTKGLNCELCMDFYHDLPWRPAEGR 310
Query: 93 KAC 95
+
Sbjct: 311 NSN 313
Score = 40.8 bits (95), Expect = 2e-05
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+ C C+ + + Y +C+ G C CKEG+Y +
Sbjct: 379 EPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGC 438
Query: 93 KAC 95
K+C
Sbjct: 439 KSC 441
Score = 37.0 bits (85), Expect = 3e-04
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRP 88
++C CN N S G C C+ G+ C C ++ +
Sbjct: 439 KSCACNPLGTIPGGN------PCDSETGYC-YCKRLVTGQRCDQCLPQHWGLSNDL 487
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 66.3 bits (161), Expect = 2e-14
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 23 RCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYY 82
R ++ C+CN +++C F+ ELY+ +G GG C CR T G C C+E ++
Sbjct: 299 RATAESASECLPCDCNGRSQECYFDPELYRSTG--HGGHCTNCRDNTDGAKCERCRENFF 356
Query: 83 RDPSR 87
R +
Sbjct: 357 RLGNT 361
Score = 51.7 bits (123), Expect = 2e-09
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 9/88 (10%)
Query: 9 GSDKESGGEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHF 68
G + + + LK + + D C CN HA +C N + C+H
Sbjct: 229 GDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKN---------EFDKLMCNCKHN 279
Query: 69 TAGRHCHYCKEGYYRDPSRPITHRKACK 96
T G C C + P R T A +
Sbjct: 280 TYGVDCEKCLPFFNDRPWRRATAESASE 307
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 66.1 bits (160), Expect = 2e-14
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSS-------GGVCLQCRHFTAGRHCHYCKEGYYRDP 85
Q+CNC+ HA C ++ E+ + + GGVCL C+H T G +C C G++R P
Sbjct: 323 QSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAP 382
Query: 86 SRPITHRKACKK 97
+P+ C+
Sbjct: 383 DQPLDSPHVCRP 394
Score = 49.1 bits (116), Expect = 2e-08
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 25 SSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRD 84
S +D C C+ HA C + C+H T G C C G+ +
Sbjct: 256 SIKDISIGGRCVCHGHADVCDAK------DPLDPFRLQCACQHNTCGGSCDRCCPGFNQQ 309
Query: 85 PSRPITHRKA 94
P +P T A
Sbjct: 310 PWKPATTDSA 319
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 55.6 bits (134), Expect = 2e-11
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHR 92
+ C CN++ + G CL+C + TAG +C CKEG++ +P P
Sbjct: 54 RPCQCNDNIDPNAVG------NCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPAD 107
Query: 93 K 93
K
Sbjct: 108 K 108
Score = 50.6 bits (121), Expect = 2e-09
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
C C + + ++ VC C TAG+ C C +GY+ DP +
Sbjct: 1 CPCPGGSSCA--------IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52
Query: 95 CKK 97
C+
Sbjct: 53 CRP 55
Score = 25.5 bits (56), Expect = 2.6
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 7/54 (12%)
Query: 33 QTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPS 86
+ C CN + + + S G C QC +GR C C GYY S
Sbjct: 110 KACACNPYGTVQQQS------SCNPVTGQC-QCLPHVSGRDCGTCDPGYYNLQS 156
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 51.1 bits (121), Expect = 4e-09
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 10/81 (12%)
Query: 16 GEHLKKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCH 75
E+L K+ + + C CN HA C G + +C H T G C
Sbjct: 251 RENLYKYFYAISNIEVIGRCKCNLHANLCSMR----------EGSLQCECEHNTTGPDCG 300
Query: 76 YCKEGYYRDPSRPITHRKACK 96
CK+ + R ++
Sbjct: 301 KCKKNFRTRSWRAGSYLPLPH 321
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 46.0 bits (108), Expect = 3e-07
Identities = 6/44 (13%), Positives = 10/44 (22%)
Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCK 78
+ C + + G V C G C +
Sbjct: 357 SISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLR 400
Score = 37.5 bits (86), Expect = 2e-04
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 27 RDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPS 86
D C CN HA C ++ + +C H T G C CK+ Y P
Sbjct: 289 SDIKVRGRCKCNLHATVCVYDN----------SKLTCECEHNTTGPDCGKCKKNYQGRPW 338
Query: 87 RPIT 90
P +
Sbjct: 339 SPGS 342
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 28.0 bits (61), Expect = 0.45
Identities = 10/45 (22%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 54 SGRSSGGVCLQCRHFTAGRHCH-YCKEGYYRDPSRPITHRKACKK 97
S C+ CR+F C C YY + C+
Sbjct: 217 SQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQD 261
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 27.2 bits (61), Expect = 0.67
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 5/28 (17%)
Query: 60 GVCLQCRHFTAGRHCHYCKEGYYRDPSR 87
VC C + T C C DPSR
Sbjct: 55 HVCPICFNITDAEKCDVC-----ADPSR 77
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 26.5 bits (58), Expect = 1.3
Identities = 13/99 (13%), Positives = 25/99 (25%), Gaps = 21/99 (21%)
Query: 1 MTMFEDIDGSDKESGGEHLKKFRCSSRDRIF----------------FQTCNCNNHARKC 44
+ +D G H+ + + F+ N +
Sbjct: 455 FQVRDDSSGDRDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENA 514
Query: 45 RFNMELYKLSGRSSGGVCLQCRH-----FTAGRHCHYCK 78
N +++ C C+ F G CH C+
Sbjct: 515 TANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCR 553
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A
{Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB:
1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 26.2 bits (58), Expect = 1.7
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 60 GVCLQCRHFTAGRH 73
G C C+ AG H
Sbjct: 60 GHCRGCQLMQAGTH 73
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 26.0 bits (58), Expect = 1.9
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 72 RHCHYCKEGYY 82
C C +G+Y
Sbjct: 90 FTCPECLKGFY 100
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 26.1 bits (58), Expect = 2.0
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 61 VCLQCRHFTAGRHCHYCKEGYY 82
V R A Y +
Sbjct: 83 VVPTVRRPPASGTNEYFERDQP 104
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 25.3 bits (56), Expect = 3.4
Identities = 3/11 (27%), Positives = 4/11 (36%)
Query: 72 RHCHYCKEGYY 82
C C+ G
Sbjct: 112 GRCPQCQAGRV 122
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 25.6 bits (55), Expect = 3.6
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 24 CSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHC-HYCKEGYY 82
C + + T +C N S C+ CR+F C C YY
Sbjct: 192 CPTICKSHGCTAEGLCCHSECLGN-----CSQPDDPTKCVACRNFYLDGRCVETCPPPYY 246
Query: 83 RDPSRPITHRKACKK 97
+ C+
Sbjct: 247 HFQDWRCVNFSFCQD 261
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 25.2 bits (56), Expect = 4.2
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 72 RHCHYCKEGYY 82
C+ C+ G Y
Sbjct: 98 GKCYACRRGQY 108
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 25.3 bits (56), Expect = 4.2
Identities = 4/10 (40%), Positives = 5/10 (50%)
Query: 73 HCHYCKEGYY 82
C CKE +
Sbjct: 99 RCRSCKEMHT 108
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 25.0 bits (55), Expect = 4.5
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 72 RHCHYCKEGYY 82
HC C EG+
Sbjct: 134 GHCRPCAEGFP 144
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 24.9 bits (55), Expect = 4.9
Identities = 4/10 (40%), Positives = 4/10 (40%)
Query: 73 HCHYCKEGYY 82
C CKE
Sbjct: 98 RCRNCKEARS 107
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 24.5 bits (54), Expect = 6.2
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 72 RHCHYCKEGYY 82
R C +CKEG Y
Sbjct: 97 RRCQFCKEGKY 107
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 24.5 bits (54), Expect = 6.3
Identities = 4/11 (36%), Positives = 6/11 (54%)
Query: 72 RHCHYCKEGYY 82
+ +CK G Y
Sbjct: 100 ENDEFCKMGRY 110
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 24.5 bits (54), Expect = 6.5
Identities = 4/11 (36%), Positives = 5/11 (45%)
Query: 72 RHCHYCKEGYY 82
C C+ G Y
Sbjct: 94 HACPACRTGNY 104
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 24.7 bits (54), Expect = 6.8
Identities = 3/11 (27%), Positives = 3/11 (27%)
Query: 72 RHCHYCKEGYY 82
C C G
Sbjct: 94 GICRNCLVGRP 104
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 24.5 bits (54), Expect = 7.5
Identities = 4/11 (36%), Positives = 4/11 (36%)
Query: 72 RHCHYCKEGYY 82
C C G Y
Sbjct: 109 NACEPCLTGRY 119
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 24.4 bits (52), Expect = 8.2
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 62 CLQCRHFTAGRHC-HYCKEGYY 82
C+ CR+ + GR C ++
Sbjct: 190 CVSCRNVSRGRECVDKGNSHHH 211
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 24.4 bits (54), Expect = 8.3
Identities = 2/10 (20%), Positives = 4/10 (40%)
Query: 73 HCHYCKEGYY 82
+ GY+
Sbjct: 91 RTSEVQRGYH 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.468
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,584,143
Number of extensions: 79771
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 123
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)