RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12862
         (98 letters)



>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 55

 Score = 47.2 bits (112), Expect = 2e-09
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRKA 94
          C C   +              ++   VC  C   TAG+ C  C +GY+ DP       + 
Sbjct: 1  CPCPGGSSCAI--------VPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRL 52

Query: 95 CK 96
          C+
Sbjct: 53 CR 54


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 56

 Score = 43.4 bits (102), Expect = 5e-08
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 35 CNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKEGYYRDPSRPITHRK 93
          C CN++             +     G CL+C + TAG +C  CKEG++ +P  P    K
Sbjct: 1  CQCNDNIDPNAVG------NCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADK 53


>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 51

 Score = 26.0 bits (57), Expect = 0.26
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 64 QCRHFTAGRHCHYCKEGYYRDPS 86
          QC    +GR C  C  GYY   S
Sbjct: 23 QCLPHVSGRDCGTCDPGYYNLQS 45


>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
           {Escherichia coli [TaxId: 562]}
          Length = 410

 Score = 24.4 bits (52), Expect = 2.7
 Identities = 8/61 (13%), Positives = 16/61 (26%)

Query: 20  KKFRCSSRDRIFFQTCNCNNHARKCRFNMELYKLSGRSSGGVCLQCRHFTAGRHCHYCKE 79
                S+ + +  +        +       L KL    +  + L     T   H  Y + 
Sbjct: 85  PGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQA 144

Query: 80  G 80
            
Sbjct: 145 V 145


>d1regx_ d.58.27.1 (X:) Translational regulator protein regA
          {Bacteriophage T4 [TaxId: 10665]}
          Length = 122

 Score = 22.8 bits (49), Expect = 8.1
 Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 4/37 (10%)

Query: 25 SSRDRIFFQTCNC---NNHARKCRFNMELYKLSGRSS 58
          +++D++ +Q+C+            F  E+ ++ GR  
Sbjct: 26 NNKDKVLYQSCHILQKKGLYYIVHFK-EMLRMDGRQV 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.138    0.468 

Gapped
Lambda     K      H
   0.267   0.0721    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 421,754
Number of extensions: 18832
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 39
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (21.9 bits)