BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12863
(150 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NW7|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|C Chain C, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW7|D Chain D, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferric Heme.
Northeast Structural Genomics Target Xcr13
pdb|2NW9|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW9|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
6-Fluoro-Tryptophan. Northeast Structural Genomics
Target Xcr13
pdb|2NW8|A Chain A, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13.
pdb|2NW8|B Chain B, Crystal Structure Of Tryptophan 2,3-Dioxygenase (Tdo) From
Xanthomonas Campestris In Complex With Ferrous Heme And
Tryptophan. Northeast Structural Genomics Target Xcr13
Length = 306
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 67 RKFEPVVNQDIHLEVS-SSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWID 125
R EP ++ D+ ++ Y + +Q+ L A P SEP E L ++ H + LW+
Sbjct: 8 RDLEPGIHTDLEGRLTYGGYLRLDQL----LSAQQPLSEPAHHDEMLFIIQHQTSELWLK 63
Query: 126 --PTNVLAAVTRVQVDE 140
+ AA+ +Q DE
Sbjct: 64 LLAHELRAAIVHLQRDE 80
>pdb|1YW0|A Chain A, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|B Chain B, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|C Chain C, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13.
pdb|1YW0|D Chain D, Crystal Structure Of The Tryptophan 2,3-Dioxygenase From
Xanthomonas Campestris. Northeast Structural Genomics
Target Xcr13
Length = 276
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 95 FLHAIGPYSEPVLIHEWLTLVTHNITYLWID--PTNVLAAVTRVQVDE 140
L A P SEP E L ++ H + LW+ + AA+ +Q DE
Sbjct: 11 LLSAQQPLSEPAHHDEXLFIIQHQTSELWLKLLAHELRAAIVHLQRDE 58
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 79 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 137
Query: 106 VLIHEW 111
L EW
Sbjct: 138 -LAEEW 142
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.6 bits (57), Expect = 5.3, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 26.6 bits (57), Expect = 5.4, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.6 bits (57), Expect = 5.5, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 79 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 137
Query: 106 VLIHEW 111
L EW
Sbjct: 138 -LAEEW 142
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 26.6 bits (57), Expect = 5.6, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 47 FRSSDYSRLVA-TKGKQLYFARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIGPYSEP 105
++ ++ RL+ KGK F F PV N +L+ ++ + + M R+ + + P+ P
Sbjct: 80 YKVNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGRE-IPSDAPWKAP 138
Query: 106 VLIHEW 111
L EW
Sbjct: 139 -LAEEW 143
>pdb|1SI8|A Chain A, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|B Chain B, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|C Chain C, Crystal Structure Of E. Faecalis Catalase
pdb|1SI8|D Chain D, Crystal Structure Of E. Faecalis Catalase
Length = 484
Score = 25.8 bits (55), Expect = 8.6, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 66 ARKFEPVVNQDIHLEVSSSYDQKEQMSRDFLHAIG 100
A +F PV+ QD+HL ++ +E++ +HA G
Sbjct: 23 AGEFGPVLIQDVHLLEKLAHFNRERVPERVVHAKG 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,401,765
Number of Sequences: 62578
Number of extensions: 162312
Number of successful extensions: 293
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 13
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)