Query psy12863
Match_columns 150
No_of_seqs 65 out of 67
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 21:42:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12863.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12863hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12529 Xylo_C: Xylosyltransf 99.9 3.8E-26 8.3E-31 183.1 5.9 56 78-133 123-178 (178)
2 PLN03183 acetylglucosaminyltra 99.3 3.9E-13 8.5E-18 119.9 1.4 55 1-71 297-352 (421)
3 KOG0799|consensus 98.1 4E-07 8.6E-12 81.5 -0.8 65 1-77 307-373 (439)
4 KOG4157|consensus 49.1 6.5 0.00014 36.2 0.4 67 2-77 236-302 (418)
5 cd03074 PDI_b'_Calsequestrin_C 47.0 8.5 0.00018 30.2 0.7 32 114-145 50-87 (120)
6 PF02643 DUF192: Uncharacteriz 42.9 38 0.00082 24.8 3.6 25 113-137 44-68 (108)
7 PRK03760 hypothetical protein; 37.0 1.5E+02 0.0032 22.4 6.0 52 78-135 14-77 (117)
8 PF07593 UnbV_ASPIC: ASPIC and 34.2 67 0.0015 21.7 3.5 33 102-136 29-62 (71)
9 PF14639 YqgF: Holliday-juncti 34.2 83 0.0018 24.7 4.4 31 106-136 7-38 (150)
10 cd05468 pVHL von Hippel-Landau 27.2 1.9E+02 0.004 22.4 5.3 30 107-136 9-38 (141)
11 PF04734 Ceramidase_alk: Neutr 25.4 1E+02 0.0022 30.0 4.2 45 98-142 606-654 (674)
No 1
>PF12529 Xylo_C: Xylosyltransferase C terminal ; InterPro: IPR024448 This entry represents a family of metazoan xylosyltransferases, which includes xylosyltransferase 1 and xylosyltransferase 2. These enzymes initiate the biosynthesis of glycosaminoglycan chains in proteoglycans by transferring xylose from UDP-xylose to specific serine residues of the core protein [].; GO: 0030158 protein xylosyltransferase activity, 0006024 glycosaminoglycan biosynthetic process
Probab=99.92 E-value=3.8e-26 Score=183.13 Aligned_cols=56 Identities=45% Similarity=0.804 Sum_probs=54.9
Q ss_pred EEEEcCCcchhhhhhhccccCCCCCCcceEEEEeccccceEEEEEEECCCCceeee
Q psy12863 78 HLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAV 133 (150)
Q Consensus 78 ~~~vgtd~D~KE~i~Rnf~g~lgp~~ep~~~~~w~~~~~~~vtv~widP~~~ia~~ 133 (150)
++|||||||+||||||||||+|||+|+|+++|+|++|+++++||+||||.|+|||+
T Consensus 123 ~leVGTd~D~KE~ifRnf~gllgp~dep~~~~~w~~~~~~~~tv~WiDP~~~va~~ 178 (178)
T PF12529_consen 123 SLEVGTDWDPKEQIFRNFGGLLGPNDEPVLVQRWARGPNFNVTVVWIDPTGVVADT 178 (178)
T ss_pred EEEeecccCHHHHHHHhhccccCCCCceEEEEEEcCCCCceEEEEEECCCCccccC
Confidence 89999999999999999999999999999999999999999999999999999985
No 2
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=99.32 E-value=3.9e-13 Score=119.88 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=50.5
Q ss_pred CeeeecCC-cccccccCceeEEeccCCCCCccccceeeeccCCCCCCCCcchHHHHHhhcCCceeEEeccCc
Q psy12863 1 RYVLRNSV-HCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEP 71 (150)
Q Consensus 1 ~TvL~NS~-fC~t~v~nNLR~tnW~Rk~GC~Cqyk~iVDWcGCSP~~fr~~D~~rl~~~~~~~~fFARKFe~ 71 (150)
||||.||+ ||+++|++|||||+|+|+.. .+|..|+.+|+++|.+ ++.+||||||.
T Consensus 297 qTVl~NS~~f~~t~vn~nLRyI~W~~~~~-------------~~P~~l~~~D~~~l~~---S~~lFARKFd~ 352 (421)
T PLN03183 297 HTVICNVPEFAKTAVNHDLHYISWDNPPK-------------QHPHTLSLNDTEKMIA---SGAAFARKFRR 352 (421)
T ss_pred HHHHhhcccccccccCCceeEEecCCCCC-------------CCCcccCHHHHHHHHh---CCCccccCCCC
Confidence 69999998 99999999999999998733 3799999999999988 89999999996
No 3
>KOG0799|consensus
Probab=98.12 E-value=4e-07 Score=81.51 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=59.3
Q ss_pred CeeeecCCcccccccCc--eeEEeccCCCCCccccceeeeccCCCCCCCCcchHHHHHhhcCCceeEEeccCcccccee
Q psy12863 1 RYVLRNSVHCFSYIDNN--LHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDI 77 (150)
Q Consensus 1 ~TvL~NS~fC~t~v~nN--LR~tnW~Rk~GC~Cqyk~iVDWcGCSP~~fr~~D~~rl~~~~~~~~fFARKFe~~v~qei 77 (150)
+|++.|+ ||.+-+.+| ||+++|.++. +|||+|.|..+...|+..+.... ...|||||+..++..+
T Consensus 307 ~Tl~~n~-~~~~g~~~~~~lr~~~W~~~~---------~~~~~~~c~~~~~~~~~cv~g~~--~~~~~~k~~~l~~nkv 373 (439)
T KOG0799|consen 307 HTLQCNP-FGMPGVFNDECLRYTNWDRKD---------VDPPKQHCHSLTVRDFICVFGSG--DLPFARKFPHLVANKV 373 (439)
T ss_pred Hhhhccc-cCCCCcccchhhcceeccccc---------ccccccCCcccccccceeeeecc--hhHHHhhCchhhcccc
Confidence 5899999 999999999 9999999976 89999999999999999988743 3799999999999987
No 4
>KOG4157|consensus
Probab=49.10 E-value=6.5 Score=36.18 Aligned_cols=67 Identities=7% Similarity=-0.251 Sum_probs=50.4
Q ss_pred eeeecCCcccccccCceeEEeccCCCCCccccceeeeccCCCCCCCCcchHHHHHhhcCCceeEEeccCcccccee
Q psy12863 2 YVLRNSVHCFSYIDNNLHITNWKRSLGCKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQLYFARKFEPVVNQDI 77 (150)
Q Consensus 2 TvL~NS~fC~t~v~nNLR~tnW~Rk~GC~Cqyk~iVDWcGCSP~~fr~~D~~rl~~~~~~~~fFARKFe~~v~qei 77 (150)
++..+...|....++|+....|+++++|+|+++ ++.+-.+++..|+.......++++|+.+...+..
T Consensus 236 y~~g~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---------~v~~~~~~~i~ll~~~~~~~~~~~~r~~~~~~~~ 302 (418)
T KOG4157|consen 236 YKDGGLLKTGFPGERNHVCNSNVSLVKTGEWGS---------VVGAVFSAAILLLRDPEKAYIAEFNRKSGGHIGF 302 (418)
T ss_pred Eeccccccccccccccccccceeeeeecceecc---------eeeecchhheeeeccccccccccccccccccccc
Confidence 455667778889999999999999999999887 6677777887877655455556666666555533
No 5
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=46.99 E-value=8.5 Score=30.23 Aligned_cols=32 Identities=13% Similarity=0.347 Sum_probs=23.8
Q ss_pred ccceEEEEEEECCCCcee------eeeEEEeeccCccc
Q psy12863 114 LVTHNITYLWIDPTNVLA------AVTRVQVDENTTSI 145 (150)
Q Consensus 114 ~~~~~vtv~widP~~~ia------~~~~~~ie~~~~~~ 145 (150)
+.|.+++++||||..... .++.|.+++..-|+
T Consensus 50 t~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGV 87 (120)
T cd03074 50 TDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGV 87 (120)
T ss_pred CcCCCceEEEECCccCchhhHHHHhhcCcccCCCceee
Confidence 377899999999998764 45577777655554
No 6
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=42.92 E-value=38 Score=24.81 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=18.9
Q ss_pred cccceEEEEEEECCCCceeeeeEEE
Q psy12863 113 TLVTHNITYLWIDPTNVLAAVTRVQ 137 (150)
Q Consensus 113 ~~~~~~vtv~widP~~~ia~~~~~~ 137 (150)
+.+.+.+-++|||..|+|.++++..
T Consensus 44 ~~~~~pLDi~fld~~g~Vv~i~~~~ 68 (108)
T PF02643_consen 44 KNTRFPLDIAFLDSDGRVVKIERMV 68 (108)
T ss_dssp TT--S-EEEEEE-TTSBEEEEEEEE
T ss_pred EccceeEEEEEECCCCeEEEEEccC
Confidence 4577889999999999999999887
No 7
>PRK03760 hypothetical protein; Provisional
Probab=36.97 E-value=1.5e+02 Score=22.42 Aligned_cols=52 Identities=4% Similarity=0.059 Sum_probs=32.0
Q ss_pred EEEEcCCcchhhhhhhccccCCCCCCcceEEE-Eec-----------cccceEEEEEEECCCCceeeeeE
Q psy12863 78 HLEVSSSYDQKEQMSRDFLHAIGPYSEPVLIH-EWL-----------TLVTHNITYLWIDPTNVLAAVTR 135 (150)
Q Consensus 78 ~~~vgtd~D~KE~i~Rnf~g~lgp~~ep~~~~-~w~-----------~~~~~~vtv~widP~~~ia~~~~ 135 (150)
.+||-..+.+..+ ||++-.+...+|. .+. -.-.+.+-++|+|+.|+|.+..+
T Consensus 14 ~vevA~t~~~R~~------GLM~R~~~~~GMLF~~~~~~~~~~sih~~~M~~pLDiiFld~~g~Vv~i~~ 77 (117)
T PRK03760 14 AVRFADTFIKRFR------GLMLVRNVNYALVFILPAETRFNASIHMFFMLSSIDVIFLDSNRRVVDFKT 77 (117)
T ss_pred EEEEcCCHHHHhh------cCCCCCCCCCeEEEeeCCccccccceEEECCCCeeEEEEECCCCeEEEEEe
Confidence 5666666655443 5555544222332 232 22446799999999999998754
No 8
>PF07593 UnbV_ASPIC: ASPIC and UnbV; InterPro: IPR011519 This conserved sequence is found associated with IPR001440 from INTERPRO in several paralogous proteins in Rhodopirellula baltica. It is also found associated with IPR000413 from INTERPRO in several eukaryotic integrin-like proteins (e.g. human ASPIC Q9NQ78 from SWISSPROT) and in several other bacterial proteins (e.g. Q84HN1 from SWISSPROT) [].
Probab=34.24 E-value=67 Score=21.65 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCcceEEEEeccccce-EEEEEEECCCCceeeeeEE
Q psy12863 102 YSEPVLIHEWLTLVTH-NITYLWIDPTNVLAAVTRV 136 (150)
Q Consensus 102 ~~ep~~~~~w~~~~~~-~vtv~widP~~~ia~~~~~ 136 (150)
.++|.+.+=.+...+. .|.|.| |.|......++
T Consensus 29 ~~~~~lhFGLG~~~~v~~v~V~W--P~G~~~~~~~~ 62 (71)
T PF07593_consen 29 QSEPRLHFGLGDATSVDSVEVRW--PDGKVQTLENV 62 (71)
T ss_pred cCCCCEEEECCCCCCEEEEEEEC--CCCCEEEEEcc
Confidence 4577777666665666 599999 88887766555
No 9
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=34.20 E-value=83 Score=24.65 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=21.8
Q ss_pred eEEEEecccc-ceEEEEEEECCCCceeeeeEE
Q psy12863 106 VLIHEWLTLV-THNITYLWIDPTNVLAAVTRV 136 (150)
Q Consensus 106 ~~~~~w~~~~-~~~vtv~widP~~~ia~~~~~ 136 (150)
|+...|+.|. ..-++.+++|..|.+.++..+
T Consensus 7 Vla~~~g~g~~~~~~~~v~ld~~G~v~d~~~~ 38 (150)
T PF14639_consen 7 VLALSWGSGDGDDAVFCVVLDENGEVLDHLKL 38 (150)
T ss_dssp EEEEE-TT--TTS-EEEEEE-TTS-EEEEEEE
T ss_pred EEEEEcCCCCCCCCEEEEEECCCCcEEEEEEE
Confidence 6778898886 677889999999999999887
No 10
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=27.19 E-value=1.9e+02 Score=22.35 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=23.6
Q ss_pred EEEEeccccceEEEEEEECCCCceeeeeEE
Q psy12863 107 LIHEWLTLVTHNITYLWIDPTNVLAAVTRV 136 (150)
Q Consensus 107 ~~~~w~~~~~~~vtv~widP~~~ia~~~~~ 136 (150)
....|....+..|.+.|||..|.......|
T Consensus 9 ~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l 38 (141)
T cd05468 9 STVRFVNRTDRPVELYWIDYDGKPVSYGTL 38 (141)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCEEEeeee
Confidence 445577788999999999999987765543
No 11
>PF04734 Ceramidase_alk: Neutral/alkaline non-lysosomal ceramidase; InterPro: IPR006823 This family represents a group of neutral/alkaline ceramidases found in both bacteria and eukaryotes [, , ]. They hydrolyse the sphingolipid ceramide into sphingosine and free fatty acid.; PDB: 2ZXC_A 2ZWS_A.
Probab=25.39 E-value=1e+02 Score=29.96 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=32.7
Q ss_pred CCCCCCcceEEEEeccccc----eEEEEEEECCCCceeeeeEEEeeccC
Q psy12863 98 AIGPYSEPVLIHEWLTLVT----HNITYLWIDPTNVLAAVTRVQVDENT 142 (150)
Q Consensus 98 ~lgp~~ep~~~~~w~~~~~----~~vtv~widP~~~ia~~~~~~ie~~~ 142 (150)
.+-.+++.-+.++|.+... -.+||.|-=|.+..+.+|+|.---.+
T Consensus 606 ~v~~D~dw~t~f~W~r~~~~~~~S~~ti~W~ip~~~~~G~YRi~~~G~~ 654 (674)
T PF04734_consen 606 TVADDADWSTRFRWKRTGSLLGTSEVTIEWEIPPDTPPGTYRIRHFGDA 654 (674)
T ss_dssp EEEETTSTTEEEEEEEETTT--EEEEEEEEE--TT--SEEEEEEEEEEE
T ss_pred EEEeCCCccEEEEEEecCCccccEEEEEEEECCCCCCCCCEEEEEEeec
Confidence 3446678899999997644 48999999999999999999865543
Done!