Query psy12863
Match_columns 150
No_of_seqs 65 out of 67
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 21:42:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12863.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12863hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 99.3 1.1E-12 3.9E-17 112.3 2.1 69 1-77 287-373 (391)
2 3m7a_A Uncharacterized protein 39.7 54 0.0018 24.5 5.3 59 76-136 35-101 (140)
3 4ajy_V VON hippel-lindau disea 31.6 63 0.0022 25.2 4.6 43 92-134 7-49 (163)
4 1lm8_V VHL, VON hippel-lindau 30.7 67 0.0023 24.9 4.6 42 92-133 4-45 (160)
5 2ov7_A 50S ribosomal protein L 21.1 26 0.00089 26.4 0.6 28 66-97 34-63 (137)
6 3pjy_A Hypothetical signal pep 18.7 1E+02 0.0035 22.8 3.4 54 76-135 21-86 (136)
7 4hde_A SCO1/SENC family lipopr 16.0 88 0.003 22.3 2.4 20 116-135 132-151 (170)
8 3lwa_A Secreted thiol-disulfid 15.1 2.2E+02 0.0075 19.6 4.3 16 120-135 149-164 (183)
9 4gqc_A Thiol peroxidase, perox 14.5 1.3E+02 0.0046 21.2 3.1 13 122-134 125-137 (164)
10 2zws_A Neutral ceramidase; pri 13.8 2E+02 0.0069 26.2 4.7 41 101-141 578-620 (646)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=99.26 E-value=1.1e-12 Score=112.29 Aligned_cols=69 Identities=23% Similarity=0.309 Sum_probs=56.7
Q ss_pred CeeeecCC----------cccccccCceeEEeccCCCC--------CccccceeeeccCCCCCCCCcchHHHHHhhcCCc
Q psy12863 1 RYVLRNSV----------HCFSYIDNNLHITNWKRSLG--------CKCQYRHVVDWCGCSPNDFRSSDYSRLVATKGKQ 62 (150)
Q Consensus 1 ~TvL~NS~----------fC~t~v~nNLR~tnW~Rk~G--------C~Cqyk~iVDWcGCSP~~fr~~D~~rl~~~~~~~ 62 (150)
||++.|+. |+.+.++.|||+++|.+..| ++||++|+++||. |..+|+.+|.+ ++
T Consensus 287 qTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~-----~~~~Dl~~l~~---s~ 358 (391)
T 2gak_A 287 ATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCV-----FGAGDLSWMLR---QH 358 (391)
T ss_dssp HHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEE-----CCGGGHHHHTT---SC
T ss_pred HHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceee-----ecHHHHHHHHh---CC
Confidence 46666653 45666799999999986443 8999999999996 77889999987 89
Q ss_pred eeEEeccCcccccee
Q psy12863 63 LYFARKFEPVVNQDI 77 (150)
Q Consensus 63 ~fFARKFe~~v~qei 77 (150)
.+|||||++.++..|
T Consensus 359 ~lFARKF~~~~d~~~ 373 (391)
T 2gak_A 359 HLFANKFDMDVDPFA 373 (391)
T ss_dssp CSEEECCCTTTCHHH
T ss_pred CceEEccCCccCHHH
Confidence 999999999888765
No 2
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=39.71 E-value=54 Score=24.55 Aligned_cols=59 Identities=10% Similarity=0.175 Sum_probs=35.7
Q ss_pred eeEEEEcCCcchhhh--hhhccc----cCC--CCCCcceEEEEeccccceEEEEEEECCCCceeeeeEE
Q psy12863 76 DIHLEVSSSYDQKEQ--MSRDFL----HAI--GPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVTRV 136 (150)
Q Consensus 76 ei~~~vgtd~D~KE~--i~Rnf~----g~l--gp~~ep~~~~~w~~~~~~~vtv~widP~~~ia~~~~~ 136 (150)
.+.+||...+.+..+ ++|.-. |+| =|...++.+ |-+.+.+-+.++|||..|+|+++.+-
T Consensus 35 ~~~vevA~t~~~R~~GLM~R~~l~~~~GMLFvf~~~~~~~f--wMknt~~PLDiiFid~dg~Vv~i~~~ 101 (140)
T 3m7a_A 35 VFRSELARTSAEQAKGLMFRTELGDEEGMIFLRNPPDMATF--WMRNTVIPLDIIFVGLDRRVMNIAAN 101 (140)
T ss_dssp EEEEEEECSHHHHHHTTTTCCCCCTTEEEEEECSSCCEEEE--CCTTCCSCEEEEEECTTSBEEEEEEE
T ss_pred EEEEEEcCCHHHHHhccCCCCCCCCCceEEEecCCCceEEE--EeeccCcceEEEEECCCCeEEEEEcc
Confidence 346778777665543 333321 222 222222222 44557788999999999999998763
No 3
>4ajy_V VON hippel-lindau disease tumor suppressor; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 3zrc_C 3zrf_C* 3ztc_C* 3zun_C 4awj_C* 1lqb_C 3ztd_C* 4b95_C* 1lm8_V 1vcb_C 4b9k_C*
Probab=31.57 E-value=63 Score=25.22 Aligned_cols=43 Identities=7% Similarity=-0.066 Sum_probs=33.5
Q ss_pred hhccccCCCCCCcceEEEEeccccceEEEEEEECCCCceeeee
Q psy12863 92 SRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAVT 134 (150)
Q Consensus 92 ~Rnf~g~lgp~~ep~~~~~w~~~~~~~vtv~widP~~~ia~~~ 134 (150)
.|-.+++-+..+.--....|....+.+|.+.|||-.|......
T Consensus 7 ~~~~p~lRS~~S~~~~~V~FvN~s~~~V~v~WIDy~G~~~~Y~ 49 (163)
T 4ajy_V 7 GRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYP 49 (163)
T ss_dssp ---CCSSCCCCCCCEEEEEEEECSSSCEEEEEECTTSCEEECC
T ss_pred ccCCCcccCCCCCceEEEEEEeCCCCeEEEEEECCCCCEEEee
Confidence 4566778888887777788988899999999999999865443
No 4
>1lm8_V VHL, VON hippel-lindau disease tumor suppressor; regulation, tumor suppressor, oxygen sensing, transcription; 1.85A {Homo sapiens} SCOP: b.3.3.1 PDB: 1vcb_C 1lqb_C 3zrf_C 3zrc_C
Probab=30.67 E-value=67 Score=24.90 Aligned_cols=42 Identities=7% Similarity=-0.068 Sum_probs=32.0
Q ss_pred hhccccCCCCCCcceEEEEeccccceEEEEEEECCCCceeee
Q psy12863 92 SRDFLHAIGPYSEPVLIHEWLTLVTHNITYLWIDPTNVLAAV 133 (150)
Q Consensus 92 ~Rnf~g~lgp~~ep~~~~~w~~~~~~~vtv~widP~~~ia~~ 133 (150)
.+-.+.+-+..++--....|....+..|.+.|||..|.....
T Consensus 4 ~~~~~~lrS~~s~~~~~V~FvN~s~~~V~v~WIDy~G~~v~Y 45 (160)
T 1lm8_V 4 GRPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPY 45 (160)
T ss_dssp ---CCSSCCCCCCCEEEEEEEECSSSCEEEEEECTTSCEEEC
T ss_pred ccCCCcccCCCCCceEEEEEEeCCCCeEEEEEECCCCCEEEe
Confidence 334566777788777777898888999999999999987743
No 5
>2ov7_A 50S ribosomal protein L1; 2.30A {Thermus thermophilus} PDB: 2oum_A 2vpl_A
Probab=21.12 E-value=26 Score=26.40 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=19.9
Q ss_pred EeccCccccceeEEEEcCCcchh--hhhhhcccc
Q psy12863 66 ARKFEPVVNQDIHLEVSSSYDQK--EQMSRDFLH 97 (150)
Q Consensus 66 ARKFe~~v~qei~~~vgtd~D~K--E~i~Rnf~g 97 (150)
-|||+.+|+..|+| ++|++ +|.+|.---
T Consensus 34 ~~kF~EtVel~i~L----~vDprk~dq~vrgtV~ 63 (137)
T 2ov7_A 34 TAKFDETVEVHAKL----GIDPRRSDQNVRGTVS 63 (137)
T ss_dssp CSSSCCEEEEEEEE----SSCTTCSSCCCEEEEE
T ss_pred cCCCCccEEEEEEe----CCCCccccceeeEEEE
Confidence 38999988766655 55664 788887633
No 6
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=18.73 E-value=1e+02 Score=22.77 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=33.4
Q ss_pred eeEEEEcCCcchhhhhhhccccCCCCCCcc---eEEEEec---------cccceEEEEEEECCCCceeeeeE
Q psy12863 76 DIHLEVSSSYDQKEQMSRDFLHAIGPYSEP---VLIHEWL---------TLVTHNITYLWIDPTNVLAAVTR 135 (150)
Q Consensus 76 ei~~~vgtd~D~KE~i~Rnf~g~lgp~~ep---~~~~~w~---------~~~~~~vtv~widP~~~ia~~~~ 135 (150)
.+.+||...+.+.. | ||++-.+=| -+.+.|. +.+.+-+.++|||..|+|+++.+
T Consensus 21 ~~~vevA~t~~~R~---~---GLM~R~~l~~~~GMLF~f~~~~~~~fwMknt~~PLDiiFld~~g~Vv~i~~ 86 (136)
T 3pjy_A 21 DLTVELAVDPSQRE---Q---GLMYRRQMAPDHGMLFDFGETRPVMMWMKNTYLPLDMLFIASDGTIRTIHE 86 (136)
T ss_dssp EEEEEEECSHHHHH---H---TTSSCCCCCTTEEEEEEEEEEECCEECCTTCCSCEEEEEECTTSBEEEEEE
T ss_pred EEEEEEcCCHHHHH---h---ccCCCCCCCCCceEEEecCCCceEEEEeeccccceEEEEECCCCEEEEEEc
Confidence 34677776665543 2 344333322 2333444 33667899999999999998843
No 7
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=15.97 E-value=88 Score=22.27 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.2
Q ss_pred ceEEEEEEECCCCceeeeeE
Q psy12863 116 THNITYLWIDPTNVLAAVTR 135 (150)
Q Consensus 116 ~~~vtv~widP~~~ia~~~~ 135 (150)
.|+-++.-|||.|+|+..|.
T Consensus 132 ~H~~~~~liD~~G~i~~~~~ 151 (170)
T 4hde_A 132 IHGTSFYLIDQNGKVMKKYS 151 (170)
T ss_dssp BCCCEEEEECTTSCEEEEEE
T ss_pred EeeeEEEEEcCCCeEEEEEC
Confidence 45567788999999998875
No 8
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=15.12 E-value=2.2e+02 Score=19.65 Aligned_cols=16 Identities=31% Similarity=0.177 Sum_probs=12.6
Q ss_pred EEEEECCCCceeeeeE
Q psy12863 120 TYLWIDPTNVLAAVTR 135 (150)
Q Consensus 120 tv~widP~~~ia~~~~ 135 (150)
+++.|||.|+|+..+.
T Consensus 149 ~~~lid~~G~i~~~~~ 164 (183)
T 3lwa_A 149 TTIVLDKQHRPAAVFL 164 (183)
T ss_dssp EEEEECTTSCEEEEEC
T ss_pred eEEEECCCCcEEEEEc
Confidence 4678999999987653
No 9
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=14.51 E-value=1.3e+02 Score=21.20 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=10.2
Q ss_pred EEECCCCceeeee
Q psy12863 122 LWIDPTNVLAAVT 134 (150)
Q Consensus 122 ~widP~~~ia~~~ 134 (150)
.-|||.|+|+..+
T Consensus 125 flID~~G~I~~~~ 137 (164)
T 4gqc_A 125 FIVKPDGTVAYKW 137 (164)
T ss_dssp EEECTTSBEEEEE
T ss_pred EEECCCCEEEEEE
Confidence 4589999998653
No 10
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=13.78 E-value=2e+02 Score=26.18 Aligned_cols=41 Identities=12% Similarity=0.099 Sum_probs=32.4
Q ss_pred CCCcceEEEEeccc--cceEEEEEEECCCCceeeeeEEEeecc
Q psy12863 101 PYSEPVLIHEWLTL--VTHNITYLWIDPTNVLAAVTRVQVDEN 141 (150)
Q Consensus 101 p~~ep~~~~~w~~~--~~~~vtv~widP~~~ia~~~~~~ie~~ 141 (150)
.+++.-++++|.+. ..-.+|+.|--|.+....+|+|.---.
T Consensus 578 ~D~d~~t~~~w~r~~~~~s~~~~~W~i~~~~~~g~yRi~~~g~ 620 (646)
T 2zws_A 578 TDNDWDTQYRWERVGISASKATISWSIPPGTEPGHYYIRHYGN 620 (646)
T ss_dssp ETTSTTEEEEEEEETTTEEEEEEEEECCTTCCSEEEEEEEEEE
T ss_pred cCCCccEEEEEEeCCCCceEEEEEEECCCCCCCcceEEEEEcc
Confidence 45577788899864 345899999999999999999986543
Done!